xref: /honee/qfunctions/newtonian.h (revision 0a32a5aa6f3730d0d13b4222cb2e5cc6c1153a88)
1dc936754SJeremy L Thompson // Copyright (c) 2017-2024, Lawrence Livermore National Security, LLC and other CEED contributors.
2727da7e7SJeremy L Thompson // All Rights Reserved. See the top-level LICENSE and NOTICE files for details.
33a8779fbSJames Wright //
4727da7e7SJeremy L Thompson // SPDX-License-Identifier: BSD-2-Clause
53a8779fbSJames Wright //
6727da7e7SJeremy L Thompson // This file is part of CEED:  http://github.com/ceed
73a8779fbSJames Wright 
83a8779fbSJames Wright /// @file
93a8779fbSJames Wright /// Operator for Navier-Stokes example using PETSc
103a8779fbSJames Wright #include <ceed.h>
11d0cce58aSJeremy L Thompson #include <math.h>
127b530f2aSAdelekeBankole #include <stdlib.h>
132b916ea7SJeremy L Thompson 
14475b2820SJames Wright #include "newtonian_state.h"
15d0cce58aSJeremy L Thompson #include "newtonian_types.h"
16d1b9ef12SLeila Ghaffari #include "stabilization.h"
17d0cce58aSJeremy L Thompson #include "utils.h"
18bb8a0c61SJames Wright 
1994a7b3d2SKenneth E. Jansen CEED_QFUNCTION_HELPER void InternalDampingLayer(const NewtonianIdealGasContext context, const State s, const CeedScalar sigma, CeedScalar damp_Y[5],
20e7754af5SKenneth E. Jansen                                                 CeedScalar damp_residual[5]) {
21e7754af5SKenneth E. Jansen   ScaleN(damp_Y, sigma, 5);
22edcfef1bSKenneth E. Jansen   State damp_s = StateFromY_fwd(context, s, damp_Y);
23e7754af5SKenneth E. Jansen 
24e7754af5SKenneth E. Jansen   CeedScalar U[5];
25e7754af5SKenneth E. Jansen   UnpackState_U(damp_s.U, U);
26e7754af5SKenneth E. Jansen   for (int i = 0; i < 5; i++) damp_residual[i] += U[i];
27e7754af5SKenneth E. Jansen }
28e7754af5SKenneth E. Jansen 
29bb8a0c61SJames Wright // *****************************************************************************
303a8779fbSJames Wright // This QFunction sets a "still" initial condition for generic Newtonian IG problems
313a8779fbSJames Wright // *****************************************************************************
328fff8293SJames Wright CEED_QFUNCTION_HELPER int ICsNewtonianIG(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out, StateVariable state_var) {
333a8779fbSJames Wright   CeedScalar(*q0)[CEED_Q_VLA] = (CeedScalar(*)[CEED_Q_VLA])out[0];
343a8779fbSJames Wright 
35bb8a0c61SJames Wright   const SetupContext context = (SetupContext)ctx;
36bb8a0c61SJames Wright 
372b916ea7SJeremy L Thompson   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
383a8779fbSJames Wright     CeedScalar q[5] = {0.};
39edcfef1bSKenneth E. Jansen     State      s    = StateFromPrimitive(&context->gas, context->reference);
408fff8293SJames Wright     StateToQ(&context->gas, s, q, state_var);
412b916ea7SJeremy L Thompson     for (CeedInt j = 0; j < 5; j++) q0[j][i] = q[j];
42b193fadcSJames Wright   }
433a8779fbSJames Wright   return 0;
443a8779fbSJames Wright }
453a8779fbSJames Wright 
462b916ea7SJeremy L Thompson CEED_QFUNCTION(ICsNewtonianIG_Prim)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
478fff8293SJames Wright   return ICsNewtonianIG(ctx, Q, in, out, STATEVAR_PRIMITIVE);
48b8fb7609SAdeleke O. Bankole }
49b8fb7609SAdeleke O. Bankole CEED_QFUNCTION(ICsNewtonianIG_Conserv)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
508fff8293SJames Wright   return ICsNewtonianIG(ctx, Q, in, out, STATEVAR_CONSERVATIVE);
51cbe60e31SLeila Ghaffari }
52cbe60e31SLeila Ghaffari 
5365dee3d2SJames Wright CEED_QFUNCTION_HELPER void MassFunction_Newtonian(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out,
5465dee3d2SJames Wright                                                   StateVariable state_var) {
5565dee3d2SJames Wright   const CeedScalar(*q_dot)[CEED_Q_VLA] = (const CeedScalar(*)[CEED_Q_VLA])in[0];
5665dee3d2SJames Wright   const CeedScalar(*q)[CEED_Q_VLA]     = (const CeedScalar(*)[CEED_Q_VLA])in[1];
5765dee3d2SJames Wright   const CeedScalar(*q_data)            = in[2];
5865dee3d2SJames Wright   CeedScalar(*v)[CEED_Q_VLA]           = (CeedScalar(*)[CEED_Q_VLA])out[0];
5965dee3d2SJames Wright   CeedScalar(*Grad_v)[5][CEED_Q_VLA]   = (CeedScalar(*)[5][CEED_Q_VLA])out[1];
6065dee3d2SJames Wright 
6165dee3d2SJames Wright   NewtonianIdealGasContext context = (NewtonianIdealGasContext)ctx;
6265dee3d2SJames Wright 
6365dee3d2SJames Wright   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
6465dee3d2SJames Wright     const CeedScalar qi[5]     = {q[0][i], q[1][i], q[2][i], q[3][i], q[4][i]};
6565dee3d2SJames Wright     const CeedScalar qi_dot[5] = {q_dot[0][i], q_dot[1][i], q_dot[2][i], q_dot[3][i], q_dot[4][i]};
6665dee3d2SJames Wright     const State      s         = StateFromQ(context, qi, state_var);
6765dee3d2SJames Wright     const State      s_dot     = StateFromQ(context, qi_dot, state_var);
6865dee3d2SJames Wright     CeedScalar       wdetJ, dXdx[3][3];
6965dee3d2SJames Wright     QdataUnpack_3D(Q, i, q_data, &wdetJ, dXdx);
7065dee3d2SJames Wright 
7165dee3d2SJames Wright     // Standard mass matrix term
7265dee3d2SJames Wright     for (CeedInt f = 0; f < 5; f++) {
7365dee3d2SJames Wright       v[f][i] = wdetJ * qi_dot[f];
7465dee3d2SJames Wright     }
7565dee3d2SJames Wright 
7665dee3d2SJames Wright     // Stabilization method: none (Galerkin), SU, or SUPG
7765dee3d2SJames Wright     State      grad_s[3] = {{{0.}}};
7865dee3d2SJames Wright     CeedScalar Tau_d[3], stab[5][3], body_force[5] = {0.}, U_dot[5];
7965dee3d2SJames Wright     UnpackState_U(s_dot.U, U_dot);
8065dee3d2SJames Wright     Tau_diagPrim(context, s, dXdx, context->dt, Tau_d);
8165dee3d2SJames Wright     Stabilization(context, s, Tau_d, grad_s, U_dot, body_force, stab);
8265dee3d2SJames Wright 
8365dee3d2SJames Wright     // Stabilized mass term
8465dee3d2SJames Wright     for (CeedInt j = 0; j < 5; j++) {
8565dee3d2SJames Wright       for (CeedInt k = 0; k < 3; k++) {
8665dee3d2SJames Wright         Grad_v[k][j][i] = wdetJ * (stab[j][0] * dXdx[k][0] + stab[j][1] * dXdx[k][1] + stab[j][2] * dXdx[k][2]);
8765dee3d2SJames Wright       }
8865dee3d2SJames Wright     }
8965dee3d2SJames Wright   }
9065dee3d2SJames Wright }
9165dee3d2SJames Wright 
9265dee3d2SJames Wright CEED_QFUNCTION(MassFunction_Newtonian_Conserv)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
9365dee3d2SJames Wright   MassFunction_Newtonian(ctx, Q, in, out, STATEVAR_CONSERVATIVE);
9465dee3d2SJames Wright   return 0;
9565dee3d2SJames Wright }
9665dee3d2SJames Wright 
97cbe60e31SLeila Ghaffari // *****************************************************************************
9804e40bb6SJeremy L Thompson // This QFunction implements the following formulation of Navier-Stokes with explicit time stepping method
993a8779fbSJames Wright //
10004e40bb6SJeremy L Thompson // This is 3D compressible Navier-Stokes in conservation form with state variables of density, momentum density, and total energy density.
1013a8779fbSJames Wright //
1023a8779fbSJames Wright // State Variables: q = ( rho, U1, U2, U3, E )
1033a8779fbSJames Wright //   rho - Mass Density
1043a8779fbSJames Wright //   Ui  - Momentum Density,      Ui = rho ui
1053a8779fbSJames Wright //   E   - Total Energy Density,  E  = rho (cv T + (u u)/2 + g z)
1063a8779fbSJames Wright //
1073a8779fbSJames Wright // Navier-Stokes Equations:
1083a8779fbSJames Wright //   drho/dt + div( U )                               = 0
1093a8779fbSJames Wright //   dU/dt   + div( rho (u x u) + P I3 ) + rho g khat = div( Fu )
1103a8779fbSJames Wright //   dE/dt   + div( (E + P) u )                       = div( Fe )
1113a8779fbSJames Wright //
1123a8779fbSJames Wright // Viscous Stress:
1133a8779fbSJames Wright //   Fu = mu (grad( u ) + grad( u )^T + lambda div ( u ) I3)
1143a8779fbSJames Wright //
1153a8779fbSJames Wright // Thermal Stress:
1163a8779fbSJames Wright //   Fe = u Fu + k grad( T )
117bb8a0c61SJames Wright // Equation of State
1183a8779fbSJames Wright //   P = (gamma - 1) (E - rho (u u) / 2 - rho g z)
1193a8779fbSJames Wright //
1203a8779fbSJames Wright // Stabilization:
1213a8779fbSJames Wright //   Tau = diag(TauC, TauM, TauM, TauM, TauE)
1223a8779fbSJames Wright //     f1 = rho  sqrt(ui uj gij)
1233a8779fbSJames Wright //     gij = dXi/dX * dXi/dX
1243a8779fbSJames Wright //     TauC = Cc f1 / (8 gii)
1253a8779fbSJames Wright //     TauM = min( 1 , 1 / f1 )
1263a8779fbSJames Wright //     TauE = TauM / (Ce cv)
1273a8779fbSJames Wright //
1283a8779fbSJames Wright //  SU   = Galerkin + grad(v) . ( Ai^T * Tau * (Aj q,j) )
1293a8779fbSJames Wright //
1303a8779fbSJames Wright // Constants:
1313a8779fbSJames Wright //   lambda = - 2 / 3,  From Stokes hypothesis
1323a8779fbSJames Wright //   mu              ,  Dynamic viscosity
1333a8779fbSJames Wright //   k               ,  Thermal conductivity
1343a8779fbSJames Wright //   cv              ,  Specific heat, constant volume
1353a8779fbSJames Wright //   cp              ,  Specific heat, constant pressure
1363a8779fbSJames Wright //   g               ,  Gravity
1373a8779fbSJames Wright //   gamma  = cp / cv,  Specific heat ratio
1383a8779fbSJames Wright //
13904e40bb6SJeremy L Thompson // We require the product of the inverse of the Jacobian (dXdx_j,k) and its transpose (dXdx_k,j) to properly compute integrals of the form: int( gradv
14004e40bb6SJeremy L Thompson // gradu )
1413a8779fbSJames Wright // *****************************************************************************
1422b916ea7SJeremy L Thompson CEED_QFUNCTION(RHSFunction_Newtonian)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
1433d65b166SJames Wright   const CeedScalar(*q)[CEED_Q_VLA]   = (const CeedScalar(*)[CEED_Q_VLA])in[0];
14487bd45e7SJames Wright   const CeedScalar(*Grad_q)          = in[1];
145ade49511SJames Wright   const CeedScalar(*q_data)          = in[2];
146*0a32a5aaSJames Wright   const CeedScalar(*x)[CEED_Q_VLA]   = (const CeedScalar(*)[CEED_Q_VLA])in[3];
1473d65b166SJames Wright   CeedScalar(*v)[CEED_Q_VLA]         = (CeedScalar(*)[CEED_Q_VLA])out[0];
1483d65b166SJames Wright   CeedScalar(*Grad_v)[5][CEED_Q_VLA] = (CeedScalar(*)[5][CEED_Q_VLA])out[1];
1493a8779fbSJames Wright 
1503a8779fbSJames Wright   NewtonianIdealGasContext context = (NewtonianIdealGasContext)ctx;
151bb8a0c61SJames Wright   const CeedScalar        *g       = context->g;
152bb8a0c61SJames Wright   const CeedScalar         dt      = context->dt;
153*0a32a5aaSJames Wright   const CeedScalar         P0      = context->idl_pressure;
1543a8779fbSJames Wright 
1553d65b166SJames Wright   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
156ade49511SJames Wright     CeedScalar       U[5], wdetJ, dXdx[3][3];
157*0a32a5aaSJames Wright     const CeedScalar x_i[3] = {x[0][i], x[1][i], x[2][i]};
158c1a52365SJed Brown     for (int j = 0; j < 5; j++) U[j] = q[j][i];
1591be49596SJames Wright     QdataUnpack_3D(Q, i, q_data, &wdetJ, dXdx);
160edcfef1bSKenneth E. Jansen     State s = StateFromU(context, U);
161c1a52365SJed Brown 
162c1a52365SJed Brown     State grad_s[3];
163edcfef1bSKenneth E. Jansen     StatePhysicalGradientFromReference(Q, i, context, s, STATEVAR_CONSERVATIVE, Grad_q, dXdx, grad_s);
164c1a52365SJed Brown 
165c1a52365SJed Brown     CeedScalar strain_rate[6], kmstress[6], stress[3][3], Fe[3];
16640a33f2dSJames Wright     KMStrainRate_State(grad_s, strain_rate);
167c1a52365SJed Brown     NewtonianStress(context, strain_rate, kmstress);
168c1a52365SJed Brown     KMUnpack(kmstress, stress);
169c1a52365SJed Brown     ViscousEnergyFlux(context, s.Y, grad_s, stress, Fe);
170c1a52365SJed Brown 
171c1a52365SJed Brown     StateConservative F_inviscid[3];
172c1a52365SJed Brown     FluxInviscid(context, s, F_inviscid);
173c1a52365SJed Brown 
174c1a52365SJed Brown     // Total flux
175c1a52365SJed Brown     CeedScalar Flux[5][3];
176d1b9ef12SLeila Ghaffari     FluxTotal(F_inviscid, stress, Fe, Flux);
177c1a52365SJed Brown 
1787523f6aaSJames Wright     for (CeedInt j = 0; j < 5; j++) {
1797523f6aaSJames Wright       for (CeedInt k = 0; k < 3; k++) Grad_v[k][j][i] = wdetJ * (dXdx[k][0] * Flux[j][0] + dXdx[k][1] * Flux[j][1] + dXdx[k][2] * Flux[j][2]);
1802b916ea7SJeremy L Thompson     }
181c1a52365SJed Brown 
18260dbb574SKenneth E. Jansen     const CeedScalar body_force[5] = {0, s.U.density * g[0], s.U.density * g[1], s.U.density * g[2], Dot3(s.U.momentum, g)};
1832b916ea7SJeremy L Thompson     for (int j = 0; j < 5; j++) v[j][i] = wdetJ * body_force[j];
1843a8779fbSJames Wright 
185*0a32a5aaSJames Wright     if (context->idl_enable) {
186*0a32a5aaSJames Wright       const CeedScalar sigma         = LinearRampCoefficient(context->idl_amplitude, context->idl_length, context->idl_start, x_i[0]);
187*0a32a5aaSJames Wright       CeedScalar       damp_state[5] = {s.Y.pressure - P0, 0, 0, 0, 0}, idl_residual[5] = {0.};
188*0a32a5aaSJames Wright       InternalDampingLayer(context, s, sigma, damp_state, idl_residual);
189*0a32a5aaSJames Wright       for (int j = 0; j < 5; j++) v[j][i] -= wdetJ * idl_residual[j];
190*0a32a5aaSJames Wright     }
191*0a32a5aaSJames Wright 
192d1b9ef12SLeila Ghaffari     // -- Stabilization method: none (Galerkin), SU, or SUPG
193d1b9ef12SLeila Ghaffari     CeedScalar Tau_d[3], stab[5][3], U_dot[5] = {0};
194d1b9ef12SLeila Ghaffari     Tau_diagPrim(context, s, dXdx, dt, Tau_d);
195edcfef1bSKenneth E. Jansen     Stabilization(context, s, Tau_d, grad_s, U_dot, body_force, stab);
1963a8779fbSJames Wright 
1972b916ea7SJeremy L Thompson     for (CeedInt j = 0; j < 5; j++) {
1982b916ea7SJeremy L Thompson       for (CeedInt k = 0; k < 3; k++) Grad_v[k][j][i] -= wdetJ * (stab[j][0] * dXdx[k][0] + stab[j][1] * dXdx[k][1] + stab[j][2] * dXdx[k][2]);
1992b916ea7SJeremy L Thompson     }
200b193fadcSJames Wright   }
2013a8779fbSJames Wright   return 0;
2023a8779fbSJames Wright }
2033a8779fbSJames Wright 
2043a8779fbSJames Wright // *****************************************************************************
20504e40bb6SJeremy L Thompson // This QFunction implements the Navier-Stokes equations (mentioned above) with implicit time stepping method
2063a8779fbSJames Wright //
2073a8779fbSJames Wright //  SU   = Galerkin + grad(v) . ( Ai^T * Tau * (Aj q,j) )
2083a8779fbSJames Wright //  SUPG = Galerkin + grad(v) . ( Ai^T * Tau * (q_dot + Aj q,j - body force) )
20904e40bb6SJeremy L Thompson //                                       (diffusive terms will be added later)
2103a8779fbSJames Wright // *****************************************************************************
2118fff8293SJames Wright CEED_QFUNCTION_HELPER int IFunction_Newtonian(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out, StateVariable state_var) {
2123d65b166SJames Wright   const CeedScalar(*q)[CEED_Q_VLA]     = (const CeedScalar(*)[CEED_Q_VLA])in[0];
21387bd45e7SJames Wright   const CeedScalar(*Grad_q)            = in[1];
2143d65b166SJames Wright   const CeedScalar(*q_dot)[CEED_Q_VLA] = (const CeedScalar(*)[CEED_Q_VLA])in[2];
215ade49511SJames Wright   const CeedScalar(*q_data)            = in[3];
2163d65b166SJames Wright   const CeedScalar(*x)[CEED_Q_VLA]     = (const CeedScalar(*)[CEED_Q_VLA])in[4];
2173d65b166SJames Wright   CeedScalar(*v)[CEED_Q_VLA]           = (CeedScalar(*)[CEED_Q_VLA])out[0];
2183d65b166SJames Wright   CeedScalar(*Grad_v)[5][CEED_Q_VLA]   = (CeedScalar(*)[5][CEED_Q_VLA])out[1];
219ade49511SJames Wright   CeedScalar(*jac_data)                = out[2];
2203d65b166SJames Wright 
2213a8779fbSJames Wright   NewtonianIdealGasContext context = (NewtonianIdealGasContext)ctx;
222bb8a0c61SJames Wright   const CeedScalar        *g       = context->g;
223bb8a0c61SJames Wright   const CeedScalar         dt      = context->dt;
224fcb2c22aSJames Wright   const CeedScalar         P0      = context->idl_pressure;
2253a8779fbSJames Wright 
2263d65b166SJames Wright   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
2273d65b166SJames Wright     const CeedScalar qi[5]  = {q[0][i], q[1][i], q[2][i], q[3][i], q[4][i]};
228c1a52365SJed Brown     const CeedScalar x_i[3] = {x[0][i], x[1][i], x[2][i]};
229edcfef1bSKenneth E. Jansen     const State      s      = StateFromQ(context, qi, state_var);
230c1a52365SJed Brown 
231ade49511SJames Wright     CeedScalar wdetJ, dXdx[3][3];
232ade49511SJames Wright     QdataUnpack_3D(Q, i, q_data, &wdetJ, dXdx);
233c1a52365SJed Brown     State grad_s[3];
234edcfef1bSKenneth E. Jansen     StatePhysicalGradientFromReference(Q, i, context, s, state_var, Grad_q, dXdx, grad_s);
235c1a52365SJed Brown 
236c1a52365SJed Brown     CeedScalar strain_rate[6], kmstress[6], stress[3][3], Fe[3];
23740a33f2dSJames Wright     KMStrainRate_State(grad_s, strain_rate);
238c1a52365SJed Brown     NewtonianStress(context, strain_rate, kmstress);
239c1a52365SJed Brown     KMUnpack(kmstress, stress);
240c1a52365SJed Brown     ViscousEnergyFlux(context, s.Y, grad_s, stress, Fe);
241c1a52365SJed Brown 
242c1a52365SJed Brown     StateConservative F_inviscid[3];
243c1a52365SJed Brown     FluxInviscid(context, s, F_inviscid);
244c1a52365SJed Brown 
245c1a52365SJed Brown     // Total flux
246c1a52365SJed Brown     CeedScalar Flux[5][3];
247d1b9ef12SLeila Ghaffari     FluxTotal(F_inviscid, stress, Fe, Flux);
248c1a52365SJed Brown 
2497523f6aaSJames Wright     for (CeedInt j = 0; j < 5; j++) {
2507523f6aaSJames Wright       for (CeedInt k = 0; k < 3; k++) {
2517523f6aaSJames Wright         Grad_v[k][j][i] = -wdetJ * (dXdx[k][0] * Flux[j][0] + dXdx[k][1] * Flux[j][1] + dXdx[k][2] * Flux[j][2]);
2523d65b166SJames Wright       }
2532b916ea7SJeremy L Thompson     }
254c1a52365SJed Brown 
25560dbb574SKenneth E. Jansen     const CeedScalar body_force[5] = {0, s.U.density * g[0], s.U.density * g[1], s.U.density * g[2], Dot3(s.U.momentum, g)};
2563a8779fbSJames Wright 
257d1b9ef12SLeila Ghaffari     // -- Stabilization method: none (Galerkin), SU, or SUPG
258edcfef1bSKenneth E. Jansen     CeedScalar Tau_d[3], stab[5][3], U_dot[5] = {0}, qi_dot[5];
25976555becSJames Wright     for (int j = 0; j < 5; j++) qi_dot[j] = q_dot[j][i];
260edcfef1bSKenneth E. Jansen     State s_dot = StateFromQ_fwd(context, s, qi_dot, state_var);
26176555becSJames Wright     UnpackState_U(s_dot.U, U_dot);
26276555becSJames Wright 
2632b916ea7SJeremy L Thompson     for (CeedInt j = 0; j < 5; j++) v[j][i] = wdetJ * (U_dot[j] - body_force[j]);
264e7754af5SKenneth E. Jansen     if (context->idl_enable) {
26594a7b3d2SKenneth E. Jansen       const CeedScalar sigma = LinearRampCoefficient(context->idl_amplitude, context->idl_length, context->idl_start, x_i[0]);
26694a7b3d2SKenneth E. Jansen       StoredValuesPack(Q, i, 14, 1, &sigma, jac_data);
267e7754af5SKenneth E. Jansen       CeedScalar damp_state[5] = {s.Y.pressure - P0, 0, 0, 0, 0}, idl_residual[5] = {0.};
26894a7b3d2SKenneth E. Jansen       InternalDampingLayer(context, s, sigma, damp_state, idl_residual);
269e7754af5SKenneth E. Jansen       for (int j = 0; j < 5; j++) v[j][i] += wdetJ * idl_residual[j];
270e7754af5SKenneth E. Jansen     }
271e7754af5SKenneth E. Jansen 
272d1b9ef12SLeila Ghaffari     Tau_diagPrim(context, s, dXdx, dt, Tau_d);
273edcfef1bSKenneth E. Jansen     Stabilization(context, s, Tau_d, grad_s, U_dot, body_force, stab);
2743a8779fbSJames Wright 
2752b916ea7SJeremy L Thompson     for (CeedInt j = 0; j < 5; j++) {
2763d65b166SJames Wright       for (CeedInt k = 0; k < 3; k++) {
2773d65b166SJames Wright         Grad_v[k][j][i] += wdetJ * (stab[j][0] * dXdx[k][0] + stab[j][1] * dXdx[k][1] + stab[j][2] * dXdx[k][2]);
2783d65b166SJames Wright       }
2792b916ea7SJeremy L Thompson     }
280ade49511SJames Wright     StoredValuesPack(Q, i, 0, 5, qi, jac_data);
281ade49511SJames Wright     StoredValuesPack(Q, i, 5, 6, kmstress, jac_data);
282ade49511SJames Wright     StoredValuesPack(Q, i, 11, 3, Tau_d, jac_data);
283b193fadcSJames Wright   }
2843a8779fbSJames Wright   return 0;
2853a8779fbSJames Wright }
286f0b65372SJed Brown 
2872b916ea7SJeremy L Thompson CEED_QFUNCTION(IFunction_Newtonian_Conserv)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
2888fff8293SJames Wright   return IFunction_Newtonian(ctx, Q, in, out, STATEVAR_CONSERVATIVE);
28976555becSJames Wright }
29076555becSJames Wright 
2912b916ea7SJeremy L Thompson CEED_QFUNCTION(IFunction_Newtonian_Prim)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
2928fff8293SJames Wright   return IFunction_Newtonian(ctx, Q, in, out, STATEVAR_PRIMITIVE);
29376555becSJames Wright }
29476555becSJames Wright 
295cbe60e31SLeila Ghaffari // *****************************************************************************
29604e40bb6SJeremy L Thompson // This QFunction implements the jacobian of the Navier-Stokes equations for implicit time stepping method.
297cbe60e31SLeila Ghaffari // *****************************************************************************
2988fff8293SJames Wright CEED_QFUNCTION_HELPER int IJacobian_Newtonian(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out, StateVariable state_var) {
2993d65b166SJames Wright   const CeedScalar(*dq)[CEED_Q_VLA]  = (const CeedScalar(*)[CEED_Q_VLA])in[0];
30087bd45e7SJames Wright   const CeedScalar(*Grad_dq)         = in[1];
301ade49511SJames Wright   const CeedScalar(*q_data)          = in[2];
30294a7b3d2SKenneth E. Jansen   const CeedScalar(*jac_data)        = in[3];
3033d65b166SJames Wright   CeedScalar(*v)[CEED_Q_VLA]         = (CeedScalar(*)[CEED_Q_VLA])out[0];
3043d65b166SJames Wright   CeedScalar(*Grad_v)[5][CEED_Q_VLA] = (CeedScalar(*)[5][CEED_Q_VLA])out[1];
3053d65b166SJames Wright 
306f0b65372SJed Brown   NewtonianIdealGasContext context = (NewtonianIdealGasContext)ctx;
307f0b65372SJed Brown   const CeedScalar        *g       = context->g;
308f0b65372SJed Brown 
3093d65b166SJames Wright   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
310ade49511SJames Wright     CeedScalar wdetJ, dXdx[3][3];
311ade49511SJames Wright     QdataUnpack_3D(Q, i, q_data, &wdetJ, dXdx);
312f0b65372SJed Brown 
3138789e95fSJames Wright     CeedScalar qi[5], kmstress[6], Tau_d[3];
314ade49511SJames Wright     StoredValuesUnpack(Q, i, 0, 5, jac_data, qi);
315ade49511SJames Wright     StoredValuesUnpack(Q, i, 5, 6, jac_data, kmstress);
316ade49511SJames Wright     StoredValuesUnpack(Q, i, 11, 3, jac_data, Tau_d);
317edcfef1bSKenneth E. Jansen     State s = StateFromQ(context, qi, state_var);
318f0b65372SJed Brown 
319edcfef1bSKenneth E. Jansen     CeedScalar dqi[5];
32076555becSJames Wright     for (int j = 0; j < 5; j++) dqi[j] = dq[j][i];
321edcfef1bSKenneth E. Jansen     State ds = StateFromQ_fwd(context, s, dqi, state_var);
322f0b65372SJed Brown 
323f0b65372SJed Brown     State grad_ds[3];
324edcfef1bSKenneth E. Jansen     StatePhysicalGradientFromReference(Q, i, context, s, state_var, Grad_dq, dXdx, grad_ds);
325f0b65372SJed Brown 
326f0b65372SJed Brown     CeedScalar dstrain_rate[6], dkmstress[6], stress[3][3], dstress[3][3], dFe[3];
32740a33f2dSJames Wright     KMStrainRate_State(grad_ds, dstrain_rate);
328f0b65372SJed Brown     NewtonianStress(context, dstrain_rate, dkmstress);
329f0b65372SJed Brown     KMUnpack(dkmstress, dstress);
330f0b65372SJed Brown     KMUnpack(kmstress, stress);
331f0b65372SJed Brown     ViscousEnergyFlux_fwd(context, s.Y, ds.Y, grad_ds, stress, dstress, dFe);
332f0b65372SJed Brown 
333f0b65372SJed Brown     StateConservative dF_inviscid[3];
334f0b65372SJed Brown     FluxInviscid_fwd(context, s, ds, dF_inviscid);
335f0b65372SJed Brown 
336f0b65372SJed Brown     // Total flux
337f0b65372SJed Brown     CeedScalar dFlux[5][3];
338d1b9ef12SLeila Ghaffari     FluxTotal(dF_inviscid, dstress, dFe, dFlux);
339f0b65372SJed Brown 
34022387d3aSJames Wright     for (int j = 0; j < 5; j++) {
34122387d3aSJames Wright       for (int k = 0; k < 3; k++) Grad_v[k][j][i] = -wdetJ * (dXdx[k][0] * dFlux[j][0] + dXdx[k][1] * dFlux[j][1] + dXdx[k][2] * dFlux[j][2]);
3422b916ea7SJeremy L Thompson     }
343f0b65372SJed Brown 
34460dbb574SKenneth E. Jansen     const CeedScalar dbody_force[5] = {0, ds.U.density * g[0], ds.U.density * g[1], ds.U.density * g[2], Dot3(ds.U.momentum, g)};
34576555becSJames Wright     CeedScalar       dU[5]          = {0.};
34676555becSJames Wright     UnpackState_U(ds.U, dU);
3472b916ea7SJeremy L Thompson     for (int j = 0; j < 5; j++) v[j][i] = wdetJ * (context->ijacobian_time_shift * dU[j] - dbody_force[j]);
348f0b65372SJed Brown 
349e7754af5SKenneth E. Jansen     if (context->idl_enable) {
35094a7b3d2SKenneth E. Jansen       const CeedScalar sigma         = jac_data[14 * Q + i];
351e7754af5SKenneth E. Jansen       CeedScalar       damp_state[5] = {ds.Y.pressure, 0, 0, 0, 0}, idl_residual[5] = {0.};
352e7754af5SKenneth E. Jansen       // This is a Picard-type linearization of the damping and could be replaced by an InternalDampingLayer_fwd that uses s and ds.
35394a7b3d2SKenneth E. Jansen       InternalDampingLayer(context, s, sigma, damp_state, idl_residual);
354e7754af5SKenneth E. Jansen       for (int j = 0; j < 5; j++) v[j][i] += wdetJ * idl_residual[j];
355e7754af5SKenneth E. Jansen     }
356e7754af5SKenneth E. Jansen 
357d1b9ef12SLeila Ghaffari     // -- Stabilization method: none (Galerkin), SU, or SUPG
358d1b9ef12SLeila Ghaffari     CeedScalar dstab[5][3], U_dot[5] = {0};
359d1b9ef12SLeila Ghaffari     for (CeedInt j = 0; j < 5; j++) U_dot[j] = context->ijacobian_time_shift * dU[j];
360edcfef1bSKenneth E. Jansen     Stabilization(context, s, Tau_d, grad_ds, U_dot, dbody_force, dstab);
361d1b9ef12SLeila Ghaffari 
3622b916ea7SJeremy L Thompson     for (int j = 0; j < 5; j++) {
3632b916ea7SJeremy L Thompson       for (int k = 0; k < 3; k++) Grad_v[k][j][i] += wdetJ * (dstab[j][0] * dXdx[k][0] + dstab[j][1] * dXdx[k][1] + dstab[j][2] * dXdx[k][2]);
3642b916ea7SJeremy L Thompson     }
365b193fadcSJames Wright   }
366f0b65372SJed Brown   return 0;
367f0b65372SJed Brown }
3688085925cSJames Wright 
3692b916ea7SJeremy L Thompson CEED_QFUNCTION(IJacobian_Newtonian_Conserv)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
3708fff8293SJames Wright   return IJacobian_Newtonian(ctx, Q, in, out, STATEVAR_CONSERVATIVE);
37176555becSJames Wright }
37276555becSJames Wright 
3732b916ea7SJeremy L Thompson CEED_QFUNCTION(IJacobian_Newtonian_Prim)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
3748fff8293SJames Wright   return IJacobian_Newtonian(ctx, Q, in, out, STATEVAR_PRIMITIVE);
37576555becSJames Wright }
37676555becSJames Wright 
377d1b9ef12SLeila Ghaffari // *****************************************************************************
3788085925cSJames Wright // Compute boundary integral (ie. for strongly set inflows)
379d1b9ef12SLeila Ghaffari // *****************************************************************************
3808fff8293SJames Wright CEED_QFUNCTION_HELPER int BoundaryIntegral(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out, StateVariable state_var) {
3814b96a86bSJames Wright   const NewtonianIdealGasContext context = (NewtonianIdealGasContext)ctx;
3823d65b166SJames Wright   const CeedScalar(*q)[CEED_Q_VLA]       = (const CeedScalar(*)[CEED_Q_VLA])in[0];
38387bd45e7SJames Wright   const CeedScalar(*Grad_q)              = in[1];
384ade49511SJames Wright   const CeedScalar(*q_data_sur)          = in[2];
3853d65b166SJames Wright   CeedScalar(*v)[CEED_Q_VLA]             = (CeedScalar(*)[CEED_Q_VLA])out[0];
3864b96a86bSJames Wright   CeedScalar(*jac_data_sur)              = context->is_implicit ? out[1] : NULL;
3878085925cSJames Wright 
388d3b25f3aSJames Wright   const bool is_implicit = context->is_implicit;
3898085925cSJames Wright 
3902b916ea7SJeremy L Thompson   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
39141e73928SJames Wright     const CeedScalar qi[5] = {q[0][i], q[1][i], q[2][i], q[3][i], q[4][i]};
392edcfef1bSKenneth E. Jansen     State            s     = StateFromQ(context, qi, state_var);
3938085925cSJames Wright 
394ade49511SJames Wright     CeedScalar wdetJb, dXdx[2][3], norm[3];
395ade49511SJames Wright     QdataBoundaryUnpack_3D(Q, i, q_data_sur, &wdetJb, dXdx, norm);
396ade49511SJames Wright     wdetJb *= is_implicit ? -1. : 1.;
3978085925cSJames Wright 
398d3b25f3aSJames Wright     State grad_s[3];
399edcfef1bSKenneth E. Jansen     StatePhysicalGradientFromReference_Boundary(Q, i, context, s, state_var, Grad_q, dXdx, grad_s);
4008085925cSJames Wright 
401d3b25f3aSJames Wright     CeedScalar strain_rate[6], kmstress[6], stress[3][3], Fe[3];
40240a33f2dSJames Wright     KMStrainRate_State(grad_s, strain_rate);
403d3b25f3aSJames Wright     NewtonianStress(context, strain_rate, kmstress);
404d3b25f3aSJames Wright     KMUnpack(kmstress, stress);
405d3b25f3aSJames Wright     ViscousEnergyFlux(context, s.Y, grad_s, stress, Fe);
406d3b25f3aSJames Wright 
407d3b25f3aSJames Wright     StateConservative F_inviscid[3];
408d3b25f3aSJames Wright     FluxInviscid(context, s, F_inviscid);
409d3b25f3aSJames Wright 
410c5740391SJames Wright     CeedScalar Flux[5];
411c5740391SJames Wright     FluxTotal_Boundary(F_inviscid, stress, Fe, norm, Flux);
412d3b25f3aSJames Wright 
413c5740391SJames Wright     for (CeedInt j = 0; j < 5; j++) v[j][i] = -wdetJb * Flux[j];
4148085925cSJames Wright 
4154b96a86bSJames Wright     if (is_implicit) {
416ade49511SJames Wright       StoredValuesPack(Q, i, 0, 5, qi, jac_data_sur);
417ade49511SJames Wright       StoredValuesPack(Q, i, 5, 6, kmstress, jac_data_sur);
4188085925cSJames Wright     }
4194b96a86bSJames Wright   }
4208085925cSJames Wright   return 0;
4218085925cSJames Wright }
4228085925cSJames Wright 
4232b916ea7SJeremy L Thompson CEED_QFUNCTION(BoundaryIntegral_Conserv)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
4248fff8293SJames Wright   return BoundaryIntegral(ctx, Q, in, out, STATEVAR_CONSERVATIVE);
425d4559bbeSJames Wright }
426d4559bbeSJames Wright 
4272b916ea7SJeremy L Thompson CEED_QFUNCTION(BoundaryIntegral_Prim)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
4288fff8293SJames Wright   return BoundaryIntegral(ctx, Q, in, out, STATEVAR_PRIMITIVE);
429d4559bbeSJames Wright }
430d4559bbeSJames Wright 
431d1b9ef12SLeila Ghaffari // *****************************************************************************
43268ae065aSJames Wright // Jacobian for "set nothing" boundary integral
433d1b9ef12SLeila Ghaffari // *****************************************************************************
4342b916ea7SJeremy L Thompson CEED_QFUNCTION_HELPER int BoundaryIntegral_Jacobian(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out,
4358fff8293SJames Wright                                                     StateVariable state_var) {
4363d65b166SJames Wright   const CeedScalar(*dq)[CEED_Q_VLA] = (const CeedScalar(*)[CEED_Q_VLA])in[0];
43787bd45e7SJames Wright   const CeedScalar(*Grad_dq)        = in[1];
438ade49511SJames Wright   const CeedScalar(*q_data_sur)     = in[2];
439c1484fadSKenneth E. Jansen   const CeedScalar(*jac_data_sur)   = in[4];
44068ae065aSJames Wright   CeedScalar(*v)[CEED_Q_VLA]        = (CeedScalar(*)[CEED_Q_VLA])out[0];
44168ae065aSJames Wright 
44268ae065aSJames Wright   const NewtonianIdealGasContext context     = (NewtonianIdealGasContext)ctx;
443ade49511SJames Wright   const bool                     is_implicit = context->is_implicit;
44468ae065aSJames Wright 
4453d65b166SJames Wright   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
446ade49511SJames Wright     CeedScalar wdetJb, dXdx[2][3], norm[3];
447ade49511SJames Wright     QdataBoundaryUnpack_3D(Q, i, q_data_sur, &wdetJb, dXdx, norm);
448ade49511SJames Wright     wdetJb *= is_implicit ? -1. : 1.;
44968ae065aSJames Wright 
450edcfef1bSKenneth E. Jansen     CeedScalar qi[5], kmstress[6], dqi[5];
451ade49511SJames Wright     StoredValuesUnpack(Q, i, 0, 5, jac_data_sur, qi);
452ade49511SJames Wright     StoredValuesUnpack(Q, i, 5, 6, jac_data_sur, kmstress);
45341e73928SJames Wright     for (int j = 0; j < 5; j++) dqi[j] = dq[j][i];
4543934e2b1SJames Wright 
455edcfef1bSKenneth E. Jansen     State s  = StateFromQ(context, qi, state_var);
456edcfef1bSKenneth E. Jansen     State ds = StateFromQ_fwd(context, s, dqi, state_var);
45768ae065aSJames Wright 
45868ae065aSJames Wright     State grad_ds[3];
459edcfef1bSKenneth E. Jansen     StatePhysicalGradientFromReference_Boundary(Q, i, context, s, state_var, Grad_dq, dXdx, grad_ds);
46068ae065aSJames Wright 
46168ae065aSJames Wright     CeedScalar dstrain_rate[6], dkmstress[6], stress[3][3], dstress[3][3], dFe[3];
46240a33f2dSJames Wright     KMStrainRate_State(grad_ds, dstrain_rate);
46368ae065aSJames Wright     NewtonianStress(context, dstrain_rate, dkmstress);
46468ae065aSJames Wright     KMUnpack(dkmstress, dstress);
46568ae065aSJames Wright     KMUnpack(kmstress, stress);
46668ae065aSJames Wright     ViscousEnergyFlux_fwd(context, s.Y, ds.Y, grad_ds, stress, dstress, dFe);
46768ae065aSJames Wright 
46868ae065aSJames Wright     StateConservative dF_inviscid[3];
46968ae065aSJames Wright     FluxInviscid_fwd(context, s, ds, dF_inviscid);
47068ae065aSJames Wright 
471c5740391SJames Wright     CeedScalar dFlux[5];
472c5740391SJames Wright     FluxTotal_Boundary(dF_inviscid, dstress, dFe, norm, dFlux);
47368ae065aSJames Wright 
474c5740391SJames Wright     for (int j = 0; j < 5; j++) v[j][i] = -wdetJb * dFlux[j];
475512c8ec7SJames Wright   }
47668ae065aSJames Wright   return 0;
47768ae065aSJames Wright }
47868ae065aSJames Wright 
4792b916ea7SJeremy L Thompson CEED_QFUNCTION(BoundaryIntegral_Jacobian_Conserv)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
4808fff8293SJames Wright   return BoundaryIntegral_Jacobian(ctx, Q, in, out, STATEVAR_CONSERVATIVE);
481d4559bbeSJames Wright }
482d4559bbeSJames Wright 
4832b916ea7SJeremy L Thompson CEED_QFUNCTION(BoundaryIntegral_Jacobian_Prim)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
4848fff8293SJames Wright   return BoundaryIntegral_Jacobian(ctx, Q, in, out, STATEVAR_PRIMITIVE);
485d4559bbeSJames Wright }
486