xref: /honee/qfunctions/newtonian.h (revision 78e8b7da6af85c065c35ddcb7a107c82a97d64cc)
1ae2b091fSJames Wright // SPDX-FileCopyrightText: Copyright (c) 2017-2024, HONEE contributors.
2ae2b091fSJames Wright // SPDX-License-Identifier: Apache-2.0 OR BSD-2-Clause
33a8779fbSJames Wright 
43a8779fbSJames Wright /// @file
53a8779fbSJames Wright /// Operator for Navier-Stokes example using PETSc
63a8779fbSJames Wright #include <ceed.h>
7d0cce58aSJeremy L Thompson #include <math.h>
87b530f2aSAdelekeBankole #include <stdlib.h>
92b916ea7SJeremy L Thompson 
10475b2820SJames Wright #include "newtonian_state.h"
11d0cce58aSJeremy L Thompson #include "newtonian_types.h"
12d1b9ef12SLeila Ghaffari #include "stabilization.h"
13d0cce58aSJeremy L Thompson #include "utils.h"
14bb8a0c61SJames Wright 
1594a7b3d2SKenneth E. Jansen CEED_QFUNCTION_HELPER void InternalDampingLayer(const NewtonianIdealGasContext context, const State s, const CeedScalar sigma, CeedScalar damp_Y[5],
16e7754af5SKenneth E. Jansen                                                 CeedScalar damp_residual[5]) {
17e7754af5SKenneth E. Jansen   ScaleN(damp_Y, sigma, 5);
18edcfef1bSKenneth E. Jansen   State damp_s = StateFromY_fwd(context, s, damp_Y);
19e7754af5SKenneth E. Jansen 
20e7754af5SKenneth E. Jansen   CeedScalar U[5];
21e7754af5SKenneth E. Jansen   UnpackState_U(damp_s.U, U);
22e7754af5SKenneth E. Jansen   for (int i = 0; i < 5; i++) damp_residual[i] += U[i];
23e7754af5SKenneth E. Jansen }
24e7754af5SKenneth E. Jansen 
25bb8a0c61SJames Wright // *****************************************************************************
263a8779fbSJames Wright // This QFunction sets a "still" initial condition for generic Newtonian IG problems
273a8779fbSJames Wright // *****************************************************************************
288fff8293SJames Wright CEED_QFUNCTION_HELPER int ICsNewtonianIG(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out, StateVariable state_var) {
293a8779fbSJames Wright   CeedScalar(*q0)[CEED_Q_VLA] = (CeedScalar(*)[CEED_Q_VLA])out[0];
303a8779fbSJames Wright 
31bb8a0c61SJames Wright   const SetupContext context = (SetupContext)ctx;
32bb8a0c61SJames Wright 
332b916ea7SJeremy L Thompson   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
34a541e550SJames Wright     CeedScalar q[5];
35edcfef1bSKenneth E. Jansen     State      s = StateFromPrimitive(&context->gas, context->reference);
368fff8293SJames Wright     StateToQ(&context->gas, s, q, state_var);
372b916ea7SJeremy L Thompson     for (CeedInt j = 0; j < 5; j++) q0[j][i] = q[j];
38b193fadcSJames Wright   }
393a8779fbSJames Wright   return 0;
403a8779fbSJames Wright }
413a8779fbSJames Wright 
429b103f75SJames Wright CEED_QFUNCTION(ICsNewtonianIG_Conserv)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
439b103f75SJames Wright   return ICsNewtonianIG(ctx, Q, in, out, STATEVAR_CONSERVATIVE);
449b103f75SJames Wright }
459b103f75SJames Wright 
462b916ea7SJeremy L Thompson CEED_QFUNCTION(ICsNewtonianIG_Prim)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
478fff8293SJames Wright   return ICsNewtonianIG(ctx, Q, in, out, STATEVAR_PRIMITIVE);
48b8fb7609SAdeleke O. Bankole }
499b103f75SJames Wright 
509b103f75SJames Wright CEED_QFUNCTION(ICsNewtonianIG_Entropy)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
519b103f75SJames Wright   return ICsNewtonianIG(ctx, Q, in, out, STATEVAR_ENTROPY);
52cbe60e31SLeila Ghaffari }
53cbe60e31SLeila Ghaffari 
5465dee3d2SJames Wright CEED_QFUNCTION_HELPER void MassFunction_Newtonian(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out,
5565dee3d2SJames Wright                                                   StateVariable state_var) {
5665dee3d2SJames Wright   const CeedScalar(*q_dot)[CEED_Q_VLA] = (const CeedScalar(*)[CEED_Q_VLA])in[0];
5765dee3d2SJames Wright   const CeedScalar(*q)[CEED_Q_VLA]     = (const CeedScalar(*)[CEED_Q_VLA])in[1];
5865dee3d2SJames Wright   const CeedScalar(*q_data)            = in[2];
5965dee3d2SJames Wright   CeedScalar(*v)[CEED_Q_VLA]           = (CeedScalar(*)[CEED_Q_VLA])out[0];
6065dee3d2SJames Wright   CeedScalar(*Grad_v)[5][CEED_Q_VLA]   = (CeedScalar(*)[5][CEED_Q_VLA])out[1];
6165dee3d2SJames Wright 
6265dee3d2SJames Wright   NewtonianIdealGasContext context = (NewtonianIdealGasContext)ctx;
6365dee3d2SJames Wright 
6465dee3d2SJames Wright   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
6565dee3d2SJames Wright     const CeedScalar qi[5]     = {q[0][i], q[1][i], q[2][i], q[3][i], q[4][i]};
6665dee3d2SJames Wright     const CeedScalar qi_dot[5] = {q_dot[0][i], q_dot[1][i], q_dot[2][i], q_dot[3][i], q_dot[4][i]};
6765dee3d2SJames Wright     const State      s         = StateFromQ(context, qi, state_var);
6865dee3d2SJames Wright     const State      s_dot     = StateFromQ(context, qi_dot, state_var);
6965dee3d2SJames Wright     CeedScalar       wdetJ, dXdx[3][3];
7065dee3d2SJames Wright     QdataUnpack_3D(Q, i, q_data, &wdetJ, dXdx);
7165dee3d2SJames Wright 
7265dee3d2SJames Wright     // Standard mass matrix term
7365dee3d2SJames Wright     for (CeedInt f = 0; f < 5; f++) {
7465dee3d2SJames Wright       v[f][i] = wdetJ * qi_dot[f];
7565dee3d2SJames Wright     }
7665dee3d2SJames Wright 
7765dee3d2SJames Wright     // Stabilization method: none (Galerkin), SU, or SUPG
7865dee3d2SJames Wright     State      grad_s[3] = {{{0.}}};
7965dee3d2SJames Wright     CeedScalar Tau_d[3], stab[5][3], body_force[5] = {0.}, U_dot[5];
8065dee3d2SJames Wright     UnpackState_U(s_dot.U, U_dot);
8165dee3d2SJames Wright     Tau_diagPrim(context, s, dXdx, context->dt, Tau_d);
8265dee3d2SJames Wright     Stabilization(context, s, Tau_d, grad_s, U_dot, body_force, stab);
8365dee3d2SJames Wright 
8465dee3d2SJames Wright     // Stabilized mass term
8565dee3d2SJames Wright     for (CeedInt j = 0; j < 5; j++) {
8665dee3d2SJames Wright       for (CeedInt k = 0; k < 3; k++) {
8765dee3d2SJames Wright         Grad_v[k][j][i] = wdetJ * (stab[j][0] * dXdx[k][0] + stab[j][1] * dXdx[k][1] + stab[j][2] * dXdx[k][2]);
8865dee3d2SJames Wright       }
8965dee3d2SJames Wright     }
9065dee3d2SJames Wright   }
9165dee3d2SJames Wright }
9265dee3d2SJames Wright 
9365dee3d2SJames Wright CEED_QFUNCTION(MassFunction_Newtonian_Conserv)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
9465dee3d2SJames Wright   MassFunction_Newtonian(ctx, Q, in, out, STATEVAR_CONSERVATIVE);
9565dee3d2SJames Wright   return 0;
9665dee3d2SJames Wright }
9765dee3d2SJames Wright 
98cbe60e31SLeila Ghaffari // *****************************************************************************
9904e40bb6SJeremy L Thompson // This QFunction implements the following formulation of Navier-Stokes with explicit time stepping method
1003a8779fbSJames Wright //
10104e40bb6SJeremy L Thompson // This is 3D compressible Navier-Stokes in conservation form with state variables of density, momentum density, and total energy density.
1023a8779fbSJames Wright //
1033a8779fbSJames Wright // State Variables: q = ( rho, U1, U2, U3, E )
1043a8779fbSJames Wright //   rho - Mass Density
1053a8779fbSJames Wright //   Ui  - Momentum Density,      Ui = rho ui
1063a8779fbSJames Wright //   E   - Total Energy Density,  E  = rho (cv T + (u u)/2 + g z)
1073a8779fbSJames Wright //
1083a8779fbSJames Wright // Navier-Stokes Equations:
1093a8779fbSJames Wright //   drho/dt + div( U )                               = 0
1103a8779fbSJames Wright //   dU/dt   + div( rho (u x u) + P I3 ) + rho g khat = div( Fu )
1113a8779fbSJames Wright //   dE/dt   + div( (E + P) u )                       = div( Fe )
1123a8779fbSJames Wright //
1133a8779fbSJames Wright // Viscous Stress:
1143a8779fbSJames Wright //   Fu = mu (grad( u ) + grad( u )^T + lambda div ( u ) I3)
1153a8779fbSJames Wright //
1163a8779fbSJames Wright // Thermal Stress:
1173a8779fbSJames Wright //   Fe = u Fu + k grad( T )
118bb8a0c61SJames Wright // Equation of State
1193a8779fbSJames Wright //   P = (gamma - 1) (E - rho (u u) / 2 - rho g z)
1203a8779fbSJames Wright //
1213a8779fbSJames Wright // Stabilization:
1223a8779fbSJames Wright //   Tau = diag(TauC, TauM, TauM, TauM, TauE)
1233a8779fbSJames Wright //     f1 = rho  sqrt(ui uj gij)
1243a8779fbSJames Wright //     gij = dXi/dX * dXi/dX
1253a8779fbSJames Wright //     TauC = Cc f1 / (8 gii)
1263a8779fbSJames Wright //     TauM = min( 1 , 1 / f1 )
1273a8779fbSJames Wright //     TauE = TauM / (Ce cv)
1283a8779fbSJames Wright //
1293a8779fbSJames Wright //  SU   = Galerkin + grad(v) . ( Ai^T * Tau * (Aj q,j) )
1303a8779fbSJames Wright //
1313a8779fbSJames Wright // Constants:
1323a8779fbSJames Wright //   lambda = - 2 / 3,  From Stokes hypothesis
1333a8779fbSJames Wright //   mu              ,  Dynamic viscosity
1343a8779fbSJames Wright //   k               ,  Thermal conductivity
1353a8779fbSJames Wright //   cv              ,  Specific heat, constant volume
1363a8779fbSJames Wright //   cp              ,  Specific heat, constant pressure
1373a8779fbSJames Wright //   g               ,  Gravity
1383a8779fbSJames Wright //   gamma  = cp / cv,  Specific heat ratio
1393a8779fbSJames Wright //
14004e40bb6SJeremy L Thompson // We require the product of the inverse of the Jacobian (dXdx_j,k) and its transpose (dXdx_k,j) to properly compute integrals of the form: int( gradv
14104e40bb6SJeremy L Thompson // gradu )
1423a8779fbSJames Wright // *****************************************************************************
1432b916ea7SJeremy L Thompson CEED_QFUNCTION(RHSFunction_Newtonian)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
1443d65b166SJames Wright   const CeedScalar(*q)[CEED_Q_VLA]   = (const CeedScalar(*)[CEED_Q_VLA])in[0];
14587bd45e7SJames Wright   const CeedScalar(*Grad_q)          = in[1];
146ade49511SJames Wright   const CeedScalar(*q_data)          = in[2];
1470a32a5aaSJames Wright   const CeedScalar(*x)[CEED_Q_VLA]   = (const CeedScalar(*)[CEED_Q_VLA])in[3];
1483d65b166SJames Wright   CeedScalar(*v)[CEED_Q_VLA]         = (CeedScalar(*)[CEED_Q_VLA])out[0];
1493d65b166SJames Wright   CeedScalar(*Grad_v)[5][CEED_Q_VLA] = (CeedScalar(*)[5][CEED_Q_VLA])out[1];
1503a8779fbSJames Wright 
1513a8779fbSJames Wright   NewtonianIdealGasContext context = (NewtonianIdealGasContext)ctx;
152bb8a0c61SJames Wright   const CeedScalar        *g       = context->g;
153bb8a0c61SJames Wright   const CeedScalar         dt      = context->dt;
1540a32a5aaSJames Wright   const CeedScalar         P0      = context->idl_pressure;
1553a8779fbSJames Wright 
1563d65b166SJames Wright   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
157ade49511SJames Wright     CeedScalar       U[5], wdetJ, dXdx[3][3];
1580a32a5aaSJames Wright     const CeedScalar x_i[3] = {x[0][i], x[1][i], x[2][i]};
159c1a52365SJed Brown     for (int j = 0; j < 5; j++) U[j] = q[j][i];
1601be49596SJames Wright     QdataUnpack_3D(Q, i, q_data, &wdetJ, dXdx);
161edcfef1bSKenneth E. Jansen     State s = StateFromU(context, U);
162c1a52365SJed Brown 
163c1a52365SJed Brown     State grad_s[3];
164edcfef1bSKenneth E. Jansen     StatePhysicalGradientFromReference(Q, i, context, s, STATEVAR_CONSERVATIVE, Grad_q, dXdx, grad_s);
165c1a52365SJed Brown 
166c1a52365SJed Brown     CeedScalar strain_rate[6], kmstress[6], stress[3][3], Fe[3];
16740a33f2dSJames Wright     KMStrainRate_State(grad_s, strain_rate);
168c1a52365SJed Brown     NewtonianStress(context, strain_rate, kmstress);
169c1a52365SJed Brown     KMUnpack(kmstress, stress);
170c1a52365SJed Brown     ViscousEnergyFlux(context, s.Y, grad_s, stress, Fe);
171c1a52365SJed Brown 
172c1a52365SJed Brown     StateConservative F_inviscid[3];
173c1a52365SJed Brown     FluxInviscid(context, s, F_inviscid);
174c1a52365SJed Brown 
175c1a52365SJed Brown     // Total flux
176c1a52365SJed Brown     CeedScalar Flux[5][3];
177d1b9ef12SLeila Ghaffari     FluxTotal(F_inviscid, stress, Fe, Flux);
178c1a52365SJed Brown 
1797523f6aaSJames Wright     for (CeedInt j = 0; j < 5; j++) {
1807523f6aaSJames Wright       for (CeedInt k = 0; k < 3; k++) Grad_v[k][j][i] = wdetJ * (dXdx[k][0] * Flux[j][0] + dXdx[k][1] * Flux[j][1] + dXdx[k][2] * Flux[j][2]);
1812b916ea7SJeremy L Thompson     }
182c1a52365SJed Brown 
18360dbb574SKenneth E. Jansen     const CeedScalar body_force[5] = {0, s.U.density * g[0], s.U.density * g[1], s.U.density * g[2], Dot3(s.U.momentum, g)};
1842b916ea7SJeremy L Thompson     for (int j = 0; j < 5; j++) v[j][i] = wdetJ * body_force[j];
1853a8779fbSJames Wright 
1860a32a5aaSJames Wright     if (context->idl_enable) {
1870a32a5aaSJames Wright       const CeedScalar sigma         = LinearRampCoefficient(context->idl_amplitude, context->idl_length, context->idl_start, x_i[0]);
1880a32a5aaSJames Wright       CeedScalar       damp_state[5] = {s.Y.pressure - P0, 0, 0, 0, 0}, idl_residual[5] = {0.};
1890a32a5aaSJames Wright       InternalDampingLayer(context, s, sigma, damp_state, idl_residual);
1900a32a5aaSJames Wright       for (int j = 0; j < 5; j++) v[j][i] -= wdetJ * idl_residual[j];
1910a32a5aaSJames Wright     }
1920a32a5aaSJames Wright 
193d1b9ef12SLeila Ghaffari     // -- Stabilization method: none (Galerkin), SU, or SUPG
194d1b9ef12SLeila Ghaffari     CeedScalar Tau_d[3], stab[5][3], U_dot[5] = {0};
195d1b9ef12SLeila Ghaffari     Tau_diagPrim(context, s, dXdx, dt, Tau_d);
196edcfef1bSKenneth E. Jansen     Stabilization(context, s, Tau_d, grad_s, U_dot, body_force, stab);
1973a8779fbSJames Wright 
1982b916ea7SJeremy L Thompson     for (CeedInt j = 0; j < 5; j++) {
1992b916ea7SJeremy L Thompson       for (CeedInt k = 0; k < 3; k++) Grad_v[k][j][i] -= wdetJ * (stab[j][0] * dXdx[k][0] + stab[j][1] * dXdx[k][1] + stab[j][2] * dXdx[k][2]);
2002b916ea7SJeremy L Thompson     }
201b193fadcSJames Wright   }
2023a8779fbSJames Wright   return 0;
2033a8779fbSJames Wright }
2043a8779fbSJames Wright 
2053a8779fbSJames Wright // *****************************************************************************
20604e40bb6SJeremy L Thompson // This QFunction implements the Navier-Stokes equations (mentioned above) with implicit time stepping method
2073a8779fbSJames Wright //
2083a8779fbSJames Wright //  SU   = Galerkin + grad(v) . ( Ai^T * Tau * (Aj q,j) )
2093a8779fbSJames Wright //  SUPG = Galerkin + grad(v) . ( Ai^T * Tau * (q_dot + Aj q,j - body force) )
21004e40bb6SJeremy L Thompson //                                       (diffusive terms will be added later)
2113a8779fbSJames Wright // *****************************************************************************
2128fff8293SJames Wright CEED_QFUNCTION_HELPER int IFunction_Newtonian(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out, StateVariable state_var) {
2133d65b166SJames Wright   const CeedScalar(*q)[CEED_Q_VLA]     = (const CeedScalar(*)[CEED_Q_VLA])in[0];
21487bd45e7SJames Wright   const CeedScalar(*Grad_q)            = in[1];
2153d65b166SJames Wright   const CeedScalar(*q_dot)[CEED_Q_VLA] = (const CeedScalar(*)[CEED_Q_VLA])in[2];
216ade49511SJames Wright   const CeedScalar(*q_data)            = in[3];
2173d65b166SJames Wright   const CeedScalar(*x)[CEED_Q_VLA]     = (const CeedScalar(*)[CEED_Q_VLA])in[4];
2183d65b166SJames Wright   CeedScalar(*v)[CEED_Q_VLA]           = (CeedScalar(*)[CEED_Q_VLA])out[0];
2193d65b166SJames Wright   CeedScalar(*Grad_v)[5][CEED_Q_VLA]   = (CeedScalar(*)[5][CEED_Q_VLA])out[1];
220ade49511SJames Wright   CeedScalar(*jac_data)                = out[2];
2213d65b166SJames Wright 
2223a8779fbSJames Wright   NewtonianIdealGasContext context = (NewtonianIdealGasContext)ctx;
223bb8a0c61SJames Wright   const CeedScalar        *g       = context->g;
224bb8a0c61SJames Wright   const CeedScalar         dt      = context->dt;
225fcb2c22aSJames Wright   const CeedScalar         P0      = context->idl_pressure;
2263a8779fbSJames Wright 
2273d65b166SJames Wright   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
2283d65b166SJames Wright     const CeedScalar qi[5]  = {q[0][i], q[1][i], q[2][i], q[3][i], q[4][i]};
229c1a52365SJed Brown     const CeedScalar x_i[3] = {x[0][i], x[1][i], x[2][i]};
230edcfef1bSKenneth E. Jansen     const State      s      = StateFromQ(context, qi, state_var);
231c1a52365SJed Brown 
232ade49511SJames Wright     CeedScalar wdetJ, dXdx[3][3];
233ade49511SJames Wright     QdataUnpack_3D(Q, i, q_data, &wdetJ, dXdx);
234c1a52365SJed Brown     State grad_s[3];
235edcfef1bSKenneth E. Jansen     StatePhysicalGradientFromReference(Q, i, context, s, state_var, Grad_q, dXdx, grad_s);
236c1a52365SJed Brown 
237c1a52365SJed Brown     CeedScalar strain_rate[6], kmstress[6], stress[3][3], Fe[3];
23840a33f2dSJames Wright     KMStrainRate_State(grad_s, strain_rate);
239c1a52365SJed Brown     NewtonianStress(context, strain_rate, kmstress);
240c1a52365SJed Brown     KMUnpack(kmstress, stress);
241c1a52365SJed Brown     ViscousEnergyFlux(context, s.Y, grad_s, stress, Fe);
242c1a52365SJed Brown 
243c1a52365SJed Brown     StateConservative F_inviscid[3];
244c1a52365SJed Brown     FluxInviscid(context, s, F_inviscid);
245c1a52365SJed Brown 
246c1a52365SJed Brown     // Total flux
247c1a52365SJed Brown     CeedScalar Flux[5][3];
248d1b9ef12SLeila Ghaffari     FluxTotal(F_inviscid, stress, Fe, Flux);
249c1a52365SJed Brown 
2507523f6aaSJames Wright     for (CeedInt j = 0; j < 5; j++) {
2517523f6aaSJames Wright       for (CeedInt k = 0; k < 3; k++) {
2527523f6aaSJames Wright         Grad_v[k][j][i] = -wdetJ * (dXdx[k][0] * Flux[j][0] + dXdx[k][1] * Flux[j][1] + dXdx[k][2] * Flux[j][2]);
2533d65b166SJames Wright       }
2542b916ea7SJeremy L Thompson     }
255c1a52365SJed Brown 
25660dbb574SKenneth E. Jansen     const CeedScalar body_force[5] = {0, s.U.density * g[0], s.U.density * g[1], s.U.density * g[2], Dot3(s.U.momentum, g)};
2573a8779fbSJames Wright 
258d1b9ef12SLeila Ghaffari     // -- Stabilization method: none (Galerkin), SU, or SUPG
259edcfef1bSKenneth E. Jansen     CeedScalar Tau_d[3], stab[5][3], U_dot[5] = {0}, qi_dot[5];
26076555becSJames Wright     for (int j = 0; j < 5; j++) qi_dot[j] = q_dot[j][i];
261edcfef1bSKenneth E. Jansen     State s_dot = StateFromQ_fwd(context, s, qi_dot, state_var);
26276555becSJames Wright     UnpackState_U(s_dot.U, U_dot);
26376555becSJames Wright 
2642b916ea7SJeremy L Thompson     for (CeedInt j = 0; j < 5; j++) v[j][i] = wdetJ * (U_dot[j] - body_force[j]);
265e7754af5SKenneth E. Jansen     if (context->idl_enable) {
26694a7b3d2SKenneth E. Jansen       const CeedScalar sigma = LinearRampCoefficient(context->idl_amplitude, context->idl_length, context->idl_start, x_i[0]);
26794a7b3d2SKenneth E. Jansen       StoredValuesPack(Q, i, 14, 1, &sigma, jac_data);
268e7754af5SKenneth E. Jansen       CeedScalar damp_state[5] = {s.Y.pressure - P0, 0, 0, 0, 0}, idl_residual[5] = {0.};
26994a7b3d2SKenneth E. Jansen       InternalDampingLayer(context, s, sigma, damp_state, idl_residual);
270e7754af5SKenneth E. Jansen       for (int j = 0; j < 5; j++) v[j][i] += wdetJ * idl_residual[j];
271e7754af5SKenneth E. Jansen     }
272e7754af5SKenneth E. Jansen 
273d1b9ef12SLeila Ghaffari     Tau_diagPrim(context, s, dXdx, dt, Tau_d);
274edcfef1bSKenneth E. Jansen     Stabilization(context, s, Tau_d, grad_s, U_dot, body_force, stab);
2753a8779fbSJames Wright 
2762b916ea7SJeremy L Thompson     for (CeedInt j = 0; j < 5; j++) {
2773d65b166SJames Wright       for (CeedInt k = 0; k < 3; k++) {
2783d65b166SJames Wright         Grad_v[k][j][i] += wdetJ * (stab[j][0] * dXdx[k][0] + stab[j][1] * dXdx[k][1] + stab[j][2] * dXdx[k][2]);
2793d65b166SJames Wright       }
2802b916ea7SJeremy L Thompson     }
281ade49511SJames Wright     StoredValuesPack(Q, i, 0, 5, qi, jac_data);
282ade49511SJames Wright     StoredValuesPack(Q, i, 5, 6, kmstress, jac_data);
283ade49511SJames Wright     StoredValuesPack(Q, i, 11, 3, Tau_d, jac_data);
284b193fadcSJames Wright   }
2853a8779fbSJames Wright   return 0;
2863a8779fbSJames Wright }
287f0b65372SJed Brown 
2882b916ea7SJeremy L Thompson CEED_QFUNCTION(IFunction_Newtonian_Conserv)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
2898fff8293SJames Wright   return IFunction_Newtonian(ctx, Q, in, out, STATEVAR_CONSERVATIVE);
29076555becSJames Wright }
29176555becSJames Wright 
2922b916ea7SJeremy L Thompson CEED_QFUNCTION(IFunction_Newtonian_Prim)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
2938fff8293SJames Wright   return IFunction_Newtonian(ctx, Q, in, out, STATEVAR_PRIMITIVE);
29476555becSJames Wright }
29576555becSJames Wright 
2969b103f75SJames Wright CEED_QFUNCTION(IFunction_Newtonian_Entropy)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
2979b103f75SJames Wright   return IFunction_Newtonian(ctx, Q, in, out, STATEVAR_ENTROPY);
2989b103f75SJames Wright }
2999b103f75SJames Wright 
300cbe60e31SLeila Ghaffari // *****************************************************************************
30104e40bb6SJeremy L Thompson // This QFunction implements the jacobian of the Navier-Stokes equations for implicit time stepping method.
302cbe60e31SLeila Ghaffari // *****************************************************************************
3038fff8293SJames Wright CEED_QFUNCTION_HELPER int IJacobian_Newtonian(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out, StateVariable state_var) {
3043d65b166SJames Wright   const CeedScalar(*dq)[CEED_Q_VLA]  = (const CeedScalar(*)[CEED_Q_VLA])in[0];
30587bd45e7SJames Wright   const CeedScalar(*Grad_dq)         = in[1];
306ade49511SJames Wright   const CeedScalar(*q_data)          = in[2];
30794a7b3d2SKenneth E. Jansen   const CeedScalar(*jac_data)        = in[3];
3083d65b166SJames Wright   CeedScalar(*v)[CEED_Q_VLA]         = (CeedScalar(*)[CEED_Q_VLA])out[0];
3093d65b166SJames Wright   CeedScalar(*Grad_v)[5][CEED_Q_VLA] = (CeedScalar(*)[5][CEED_Q_VLA])out[1];
3103d65b166SJames Wright 
311f0b65372SJed Brown   NewtonianIdealGasContext context = (NewtonianIdealGasContext)ctx;
312f0b65372SJed Brown   const CeedScalar        *g       = context->g;
313f0b65372SJed Brown 
3143d65b166SJames Wright   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
315ade49511SJames Wright     CeedScalar wdetJ, dXdx[3][3];
316ade49511SJames Wright     QdataUnpack_3D(Q, i, q_data, &wdetJ, dXdx);
317f0b65372SJed Brown 
3188789e95fSJames Wright     CeedScalar qi[5], kmstress[6], Tau_d[3];
319ade49511SJames Wright     StoredValuesUnpack(Q, i, 0, 5, jac_data, qi);
320ade49511SJames Wright     StoredValuesUnpack(Q, i, 5, 6, jac_data, kmstress);
321ade49511SJames Wright     StoredValuesUnpack(Q, i, 11, 3, jac_data, Tau_d);
322edcfef1bSKenneth E. Jansen     State s = StateFromQ(context, qi, state_var);
323f0b65372SJed Brown 
324edcfef1bSKenneth E. Jansen     CeedScalar dqi[5];
32576555becSJames Wright     for (int j = 0; j < 5; j++) dqi[j] = dq[j][i];
326edcfef1bSKenneth E. Jansen     State ds = StateFromQ_fwd(context, s, dqi, state_var);
327f0b65372SJed Brown 
328f0b65372SJed Brown     State grad_ds[3];
329edcfef1bSKenneth E. Jansen     StatePhysicalGradientFromReference(Q, i, context, s, state_var, Grad_dq, dXdx, grad_ds);
330f0b65372SJed Brown 
331f0b65372SJed Brown     CeedScalar dstrain_rate[6], dkmstress[6], stress[3][3], dstress[3][3], dFe[3];
33240a33f2dSJames Wright     KMStrainRate_State(grad_ds, dstrain_rate);
333f0b65372SJed Brown     NewtonianStress(context, dstrain_rate, dkmstress);
334f0b65372SJed Brown     KMUnpack(dkmstress, dstress);
335f0b65372SJed Brown     KMUnpack(kmstress, stress);
336f0b65372SJed Brown     ViscousEnergyFlux_fwd(context, s.Y, ds.Y, grad_ds, stress, dstress, dFe);
337f0b65372SJed Brown 
338f0b65372SJed Brown     StateConservative dF_inviscid[3];
339f0b65372SJed Brown     FluxInviscid_fwd(context, s, ds, dF_inviscid);
340f0b65372SJed Brown 
341f0b65372SJed Brown     // Total flux
342f0b65372SJed Brown     CeedScalar dFlux[5][3];
343d1b9ef12SLeila Ghaffari     FluxTotal(dF_inviscid, dstress, dFe, dFlux);
344f0b65372SJed Brown 
34522387d3aSJames Wright     for (int j = 0; j < 5; j++) {
34622387d3aSJames Wright       for (int k = 0; k < 3; k++) Grad_v[k][j][i] = -wdetJ * (dXdx[k][0] * dFlux[j][0] + dXdx[k][1] * dFlux[j][1] + dXdx[k][2] * dFlux[j][2]);
3472b916ea7SJeremy L Thompson     }
348f0b65372SJed Brown 
34960dbb574SKenneth E. Jansen     const CeedScalar dbody_force[5] = {0, ds.U.density * g[0], ds.U.density * g[1], ds.U.density * g[2], Dot3(ds.U.momentum, g)};
35076555becSJames Wright     CeedScalar       dU[5]          = {0.};
35176555becSJames Wright     UnpackState_U(ds.U, dU);
3522b916ea7SJeremy L Thompson     for (int j = 0; j < 5; j++) v[j][i] = wdetJ * (context->ijacobian_time_shift * dU[j] - dbody_force[j]);
353f0b65372SJed Brown 
354e7754af5SKenneth E. Jansen     if (context->idl_enable) {
35594a7b3d2SKenneth E. Jansen       const CeedScalar sigma         = jac_data[14 * Q + i];
356e7754af5SKenneth E. Jansen       CeedScalar       damp_state[5] = {ds.Y.pressure, 0, 0, 0, 0}, idl_residual[5] = {0.};
357e7754af5SKenneth E. Jansen       // This is a Picard-type linearization of the damping and could be replaced by an InternalDampingLayer_fwd that uses s and ds.
35894a7b3d2SKenneth E. Jansen       InternalDampingLayer(context, s, sigma, damp_state, idl_residual);
359e7754af5SKenneth E. Jansen       for (int j = 0; j < 5; j++) v[j][i] += wdetJ * idl_residual[j];
360e7754af5SKenneth E. Jansen     }
361e7754af5SKenneth E. Jansen 
362d1b9ef12SLeila Ghaffari     // -- Stabilization method: none (Galerkin), SU, or SUPG
363d1b9ef12SLeila Ghaffari     CeedScalar dstab[5][3], U_dot[5] = {0};
364d1b9ef12SLeila Ghaffari     for (CeedInt j = 0; j < 5; j++) U_dot[j] = context->ijacobian_time_shift * dU[j];
365edcfef1bSKenneth E. Jansen     Stabilization(context, s, Tau_d, grad_ds, U_dot, dbody_force, dstab);
366d1b9ef12SLeila Ghaffari 
3672b916ea7SJeremy L Thompson     for (int j = 0; j < 5; j++) {
3682b916ea7SJeremy L Thompson       for (int k = 0; k < 3; k++) Grad_v[k][j][i] += wdetJ * (dstab[j][0] * dXdx[k][0] + dstab[j][1] * dXdx[k][1] + dstab[j][2] * dXdx[k][2]);
3692b916ea7SJeremy L Thompson     }
370b193fadcSJames Wright   }
371f0b65372SJed Brown   return 0;
372f0b65372SJed Brown }
3738085925cSJames Wright 
3742b916ea7SJeremy L Thompson CEED_QFUNCTION(IJacobian_Newtonian_Conserv)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
3758fff8293SJames Wright   return IJacobian_Newtonian(ctx, Q, in, out, STATEVAR_CONSERVATIVE);
37676555becSJames Wright }
37776555becSJames Wright 
3782b916ea7SJeremy L Thompson CEED_QFUNCTION(IJacobian_Newtonian_Prim)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
3798fff8293SJames Wright   return IJacobian_Newtonian(ctx, Q, in, out, STATEVAR_PRIMITIVE);
38076555becSJames Wright }
38176555becSJames Wright 
3829b103f75SJames Wright CEED_QFUNCTION(IJacobian_Newtonian_Entropy)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
3839b103f75SJames Wright   return IJacobian_Newtonian(ctx, Q, in, out, STATEVAR_ENTROPY);
3849b103f75SJames Wright }
3859b103f75SJames Wright 
386d1b9ef12SLeila Ghaffari // *****************************************************************************
3878085925cSJames Wright // Compute boundary integral (ie. for strongly set inflows)
388d1b9ef12SLeila Ghaffari // *****************************************************************************
3898fff8293SJames Wright CEED_QFUNCTION_HELPER int BoundaryIntegral(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out, StateVariable state_var) {
3904b96a86bSJames Wright   const NewtonianIdealGasContext context = (NewtonianIdealGasContext)ctx;
3913d65b166SJames Wright   const CeedScalar(*q)[CEED_Q_VLA]       = (const CeedScalar(*)[CEED_Q_VLA])in[0];
39287bd45e7SJames Wright   const CeedScalar(*Grad_q)              = in[1];
393ade49511SJames Wright   const CeedScalar(*q_data_sur)          = in[2];
3943d65b166SJames Wright   CeedScalar(*v)[CEED_Q_VLA]             = (CeedScalar(*)[CEED_Q_VLA])out[0];
3954b96a86bSJames Wright   CeedScalar(*jac_data_sur)              = context->is_implicit ? out[1] : NULL;
3968085925cSJames Wright 
397d3b25f3aSJames Wright   const bool is_implicit = context->is_implicit;
3988085925cSJames Wright 
3992b916ea7SJeremy L Thompson   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
40041e73928SJames Wright     const CeedScalar qi[5] = {q[0][i], q[1][i], q[2][i], q[3][i], q[4][i]};
401edcfef1bSKenneth E. Jansen     State            s     = StateFromQ(context, qi, state_var);
4028085925cSJames Wright 
403*78e8b7daSJames Wright     CeedScalar wdetJb, dXdx[2][3], normal[3];
404*78e8b7daSJames Wright     QdataBoundaryUnpack_3D(Q, i, q_data_sur, &wdetJb, dXdx, normal);
405ade49511SJames Wright     wdetJb *= is_implicit ? -1. : 1.;
4068085925cSJames Wright 
407d3b25f3aSJames Wright     State grad_s[3];
408edcfef1bSKenneth E. Jansen     StatePhysicalGradientFromReference_Boundary(Q, i, context, s, state_var, Grad_q, dXdx, grad_s);
4098085925cSJames Wright 
410d3b25f3aSJames Wright     CeedScalar strain_rate[6], kmstress[6], stress[3][3], Fe[3];
41140a33f2dSJames Wright     KMStrainRate_State(grad_s, strain_rate);
412d3b25f3aSJames Wright     NewtonianStress(context, strain_rate, kmstress);
413d3b25f3aSJames Wright     KMUnpack(kmstress, stress);
414d3b25f3aSJames Wright     ViscousEnergyFlux(context, s.Y, grad_s, stress, Fe);
415d3b25f3aSJames Wright 
416d3b25f3aSJames Wright     StateConservative F_inviscid[3];
417d3b25f3aSJames Wright     FluxInviscid(context, s, F_inviscid);
418d3b25f3aSJames Wright 
419c5740391SJames Wright     CeedScalar Flux[5];
420*78e8b7daSJames Wright     FluxTotal_Boundary(F_inviscid, stress, Fe, normal, Flux);
421d3b25f3aSJames Wright 
422c5740391SJames Wright     for (CeedInt j = 0; j < 5; j++) v[j][i] = -wdetJb * Flux[j];
4238085925cSJames Wright 
4244b96a86bSJames Wright     if (is_implicit) {
425ade49511SJames Wright       StoredValuesPack(Q, i, 0, 5, qi, jac_data_sur);
426ade49511SJames Wright       StoredValuesPack(Q, i, 5, 6, kmstress, jac_data_sur);
4278085925cSJames Wright     }
4284b96a86bSJames Wright   }
4298085925cSJames Wright   return 0;
4308085925cSJames Wright }
4318085925cSJames Wright 
4322b916ea7SJeremy L Thompson CEED_QFUNCTION(BoundaryIntegral_Conserv)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
4338fff8293SJames Wright   return BoundaryIntegral(ctx, Q, in, out, STATEVAR_CONSERVATIVE);
434d4559bbeSJames Wright }
435d4559bbeSJames Wright 
4362b916ea7SJeremy L Thompson CEED_QFUNCTION(BoundaryIntegral_Prim)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
4378fff8293SJames Wright   return BoundaryIntegral(ctx, Q, in, out, STATEVAR_PRIMITIVE);
438d4559bbeSJames Wright }
439d4559bbeSJames Wright 
4409b103f75SJames Wright CEED_QFUNCTION(BoundaryIntegral_Entropy)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
4419b103f75SJames Wright   return BoundaryIntegral(ctx, Q, in, out, STATEVAR_ENTROPY);
4429b103f75SJames Wright }
4439b103f75SJames Wright 
444d1b9ef12SLeila Ghaffari // *****************************************************************************
44568ae065aSJames Wright // Jacobian for "set nothing" boundary integral
446d1b9ef12SLeila Ghaffari // *****************************************************************************
4472b916ea7SJeremy L Thompson CEED_QFUNCTION_HELPER int BoundaryIntegral_Jacobian(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out,
4488fff8293SJames Wright                                                     StateVariable state_var) {
4493d65b166SJames Wright   const CeedScalar(*dq)[CEED_Q_VLA] = (const CeedScalar(*)[CEED_Q_VLA])in[0];
45087bd45e7SJames Wright   const CeedScalar(*Grad_dq)        = in[1];
451ade49511SJames Wright   const CeedScalar(*q_data_sur)     = in[2];
452c1484fadSKenneth E. Jansen   const CeedScalar(*jac_data_sur)   = in[4];
45368ae065aSJames Wright   CeedScalar(*v)[CEED_Q_VLA]        = (CeedScalar(*)[CEED_Q_VLA])out[0];
45468ae065aSJames Wright 
45568ae065aSJames Wright   const NewtonianIdealGasContext context     = (NewtonianIdealGasContext)ctx;
456ade49511SJames Wright   const bool                     is_implicit = context->is_implicit;
45768ae065aSJames Wright 
4583d65b166SJames Wright   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
459*78e8b7daSJames Wright     CeedScalar wdetJb, dXdx[2][3], normal[3];
460*78e8b7daSJames Wright     QdataBoundaryUnpack_3D(Q, i, q_data_sur, &wdetJb, dXdx, normal);
461ade49511SJames Wright     wdetJb *= is_implicit ? -1. : 1.;
46268ae065aSJames Wright 
463edcfef1bSKenneth E. Jansen     CeedScalar qi[5], kmstress[6], dqi[5];
464ade49511SJames Wright     StoredValuesUnpack(Q, i, 0, 5, jac_data_sur, qi);
465ade49511SJames Wright     StoredValuesUnpack(Q, i, 5, 6, jac_data_sur, kmstress);
46641e73928SJames Wright     for (int j = 0; j < 5; j++) dqi[j] = dq[j][i];
4673934e2b1SJames Wright 
468edcfef1bSKenneth E. Jansen     State s  = StateFromQ(context, qi, state_var);
469edcfef1bSKenneth E. Jansen     State ds = StateFromQ_fwd(context, s, dqi, state_var);
47068ae065aSJames Wright 
47168ae065aSJames Wright     State grad_ds[3];
472edcfef1bSKenneth E. Jansen     StatePhysicalGradientFromReference_Boundary(Q, i, context, s, state_var, Grad_dq, dXdx, grad_ds);
47368ae065aSJames Wright 
47468ae065aSJames Wright     CeedScalar dstrain_rate[6], dkmstress[6], stress[3][3], dstress[3][3], dFe[3];
47540a33f2dSJames Wright     KMStrainRate_State(grad_ds, dstrain_rate);
47668ae065aSJames Wright     NewtonianStress(context, dstrain_rate, dkmstress);
47768ae065aSJames Wright     KMUnpack(dkmstress, dstress);
47868ae065aSJames Wright     KMUnpack(kmstress, stress);
47968ae065aSJames Wright     ViscousEnergyFlux_fwd(context, s.Y, ds.Y, grad_ds, stress, dstress, dFe);
48068ae065aSJames Wright 
48168ae065aSJames Wright     StateConservative dF_inviscid[3];
48268ae065aSJames Wright     FluxInviscid_fwd(context, s, ds, dF_inviscid);
48368ae065aSJames Wright 
484c5740391SJames Wright     CeedScalar dFlux[5];
485*78e8b7daSJames Wright     FluxTotal_Boundary(dF_inviscid, dstress, dFe, normal, dFlux);
48668ae065aSJames Wright 
487c5740391SJames Wright     for (int j = 0; j < 5; j++) v[j][i] = -wdetJb * dFlux[j];
488512c8ec7SJames Wright   }
48968ae065aSJames Wright   return 0;
49068ae065aSJames Wright }
49168ae065aSJames Wright 
4922b916ea7SJeremy L Thompson CEED_QFUNCTION(BoundaryIntegral_Jacobian_Conserv)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
4938fff8293SJames Wright   return BoundaryIntegral_Jacobian(ctx, Q, in, out, STATEVAR_CONSERVATIVE);
494d4559bbeSJames Wright }
495d4559bbeSJames Wright 
4962b916ea7SJeremy L Thompson CEED_QFUNCTION(BoundaryIntegral_Jacobian_Prim)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
4978fff8293SJames Wright   return BoundaryIntegral_Jacobian(ctx, Q, in, out, STATEVAR_PRIMITIVE);
498d4559bbeSJames Wright }
4999b103f75SJames Wright 
5009b103f75SJames Wright CEED_QFUNCTION(BoundaryIntegral_Jacobian_Entropy)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
5019b103f75SJames Wright   return BoundaryIntegral_Jacobian(ctx, Q, in, out, STATEVAR_ENTROPY);
5029b103f75SJames Wright }
503