xref: /honee/qfunctions/newtonian.h (revision fcb2c22a40d027d860b73be9ac89e2e220a55865)
1dc936754SJeremy L Thompson // Copyright (c) 2017-2024, Lawrence Livermore National Security, LLC and other CEED contributors.
2727da7e7SJeremy L Thompson // All Rights Reserved. See the top-level LICENSE and NOTICE files for details.
33a8779fbSJames Wright //
4727da7e7SJeremy L Thompson // SPDX-License-Identifier: BSD-2-Clause
53a8779fbSJames Wright //
6727da7e7SJeremy L Thompson // This file is part of CEED:  http://github.com/ceed
73a8779fbSJames Wright 
83a8779fbSJames Wright /// @file
93a8779fbSJames Wright /// Operator for Navier-Stokes example using PETSc
103a8779fbSJames Wright #include <ceed.h>
11d0cce58aSJeremy L Thompson #include <math.h>
127b530f2aSAdelekeBankole #include <stdlib.h>
132b916ea7SJeremy L Thompson 
14475b2820SJames Wright #include "newtonian_state.h"
15d0cce58aSJeremy L Thompson #include "newtonian_types.h"
16d1b9ef12SLeila Ghaffari #include "stabilization.h"
17d0cce58aSJeremy L Thompson #include "utils.h"
18bb8a0c61SJames Wright 
1994a7b3d2SKenneth E. Jansen CEED_QFUNCTION_HELPER void InternalDampingLayer(const NewtonianIdealGasContext context, const State s, const CeedScalar sigma, CeedScalar damp_Y[5],
20e7754af5SKenneth E. Jansen                                                 CeedScalar damp_residual[5]) {
21e7754af5SKenneth E. Jansen   ScaleN(damp_Y, sigma, 5);
22edcfef1bSKenneth E. Jansen   State damp_s = StateFromY_fwd(context, s, damp_Y);
23e7754af5SKenneth E. Jansen 
24e7754af5SKenneth E. Jansen   CeedScalar U[5];
25e7754af5SKenneth E. Jansen   UnpackState_U(damp_s.U, U);
26e7754af5SKenneth E. Jansen   for (int i = 0; i < 5; i++) damp_residual[i] += U[i];
27e7754af5SKenneth E. Jansen }
28e7754af5SKenneth E. Jansen 
29bb8a0c61SJames Wright // *****************************************************************************
303a8779fbSJames Wright // This QFunction sets a "still" initial condition for generic Newtonian IG problems
313a8779fbSJames Wright // *****************************************************************************
328fff8293SJames Wright CEED_QFUNCTION_HELPER int ICsNewtonianIG(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out, StateVariable state_var) {
333a8779fbSJames Wright   CeedScalar(*q0)[CEED_Q_VLA] = (CeedScalar(*)[CEED_Q_VLA])out[0];
343a8779fbSJames Wright 
35bb8a0c61SJames Wright   const SetupContext context = (SetupContext)ctx;
36bb8a0c61SJames Wright 
372b916ea7SJeremy L Thompson   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
383a8779fbSJames Wright     CeedScalar q[5] = {0.};
39edcfef1bSKenneth E. Jansen     State      s    = StateFromPrimitive(&context->gas, context->reference);
408fff8293SJames Wright     StateToQ(&context->gas, s, q, state_var);
412b916ea7SJeremy L Thompson     for (CeedInt j = 0; j < 5; j++) q0[j][i] = q[j];
42b193fadcSJames Wright   }
433a8779fbSJames Wright   return 0;
443a8779fbSJames Wright }
453a8779fbSJames Wright 
462b916ea7SJeremy L Thompson CEED_QFUNCTION(ICsNewtonianIG_Prim)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
478fff8293SJames Wright   return ICsNewtonianIG(ctx, Q, in, out, STATEVAR_PRIMITIVE);
48b8fb7609SAdeleke O. Bankole }
49b8fb7609SAdeleke O. Bankole CEED_QFUNCTION(ICsNewtonianIG_Conserv)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
508fff8293SJames Wright   return ICsNewtonianIG(ctx, Q, in, out, STATEVAR_CONSERVATIVE);
51cbe60e31SLeila Ghaffari }
52cbe60e31SLeila Ghaffari 
5365dee3d2SJames Wright CEED_QFUNCTION_HELPER void MassFunction_Newtonian(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out,
5465dee3d2SJames Wright                                                   StateVariable state_var) {
5565dee3d2SJames Wright   const CeedScalar(*q_dot)[CEED_Q_VLA] = (const CeedScalar(*)[CEED_Q_VLA])in[0];
5665dee3d2SJames Wright   const CeedScalar(*q)[CEED_Q_VLA]     = (const CeedScalar(*)[CEED_Q_VLA])in[1];
5765dee3d2SJames Wright   const CeedScalar(*q_data)            = in[2];
5865dee3d2SJames Wright   CeedScalar(*v)[CEED_Q_VLA]           = (CeedScalar(*)[CEED_Q_VLA])out[0];
5965dee3d2SJames Wright   CeedScalar(*Grad_v)[5][CEED_Q_VLA]   = (CeedScalar(*)[5][CEED_Q_VLA])out[1];
6065dee3d2SJames Wright 
6165dee3d2SJames Wright   NewtonianIdealGasContext context = (NewtonianIdealGasContext)ctx;
6265dee3d2SJames Wright 
6365dee3d2SJames Wright   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
6465dee3d2SJames Wright     const CeedScalar qi[5]     = {q[0][i], q[1][i], q[2][i], q[3][i], q[4][i]};
6565dee3d2SJames Wright     const CeedScalar qi_dot[5] = {q_dot[0][i], q_dot[1][i], q_dot[2][i], q_dot[3][i], q_dot[4][i]};
6665dee3d2SJames Wright     const State      s         = StateFromQ(context, qi, state_var);
6765dee3d2SJames Wright     const State      s_dot     = StateFromQ(context, qi_dot, state_var);
6865dee3d2SJames Wright     CeedScalar       wdetJ, dXdx[3][3];
6965dee3d2SJames Wright     QdataUnpack_3D(Q, i, q_data, &wdetJ, dXdx);
7065dee3d2SJames Wright 
7165dee3d2SJames Wright     // Standard mass matrix term
7265dee3d2SJames Wright     for (CeedInt f = 0; f < 5; f++) {
7365dee3d2SJames Wright       v[f][i] = wdetJ * qi_dot[f];
7465dee3d2SJames Wright     }
7565dee3d2SJames Wright 
7665dee3d2SJames Wright     // Stabilization method: none (Galerkin), SU, or SUPG
7765dee3d2SJames Wright     State      grad_s[3] = {{{0.}}};
7865dee3d2SJames Wright     CeedScalar Tau_d[3], stab[5][3], body_force[5] = {0.}, U_dot[5];
7965dee3d2SJames Wright     UnpackState_U(s_dot.U, U_dot);
8065dee3d2SJames Wright     Tau_diagPrim(context, s, dXdx, context->dt, Tau_d);
8165dee3d2SJames Wright     Stabilization(context, s, Tau_d, grad_s, U_dot, body_force, stab);
8265dee3d2SJames Wright 
8365dee3d2SJames Wright     // Stabilized mass term
8465dee3d2SJames Wright     for (CeedInt j = 0; j < 5; j++) {
8565dee3d2SJames Wright       for (CeedInt k = 0; k < 3; k++) {
8665dee3d2SJames Wright         Grad_v[k][j][i] = wdetJ * (stab[j][0] * dXdx[k][0] + stab[j][1] * dXdx[k][1] + stab[j][2] * dXdx[k][2]);
8765dee3d2SJames Wright       }
8865dee3d2SJames Wright     }
8965dee3d2SJames Wright   }
9065dee3d2SJames Wright }
9165dee3d2SJames Wright 
9265dee3d2SJames Wright CEED_QFUNCTION(MassFunction_Newtonian_Conserv)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
9365dee3d2SJames Wright   MassFunction_Newtonian(ctx, Q, in, out, STATEVAR_CONSERVATIVE);
9465dee3d2SJames Wright   return 0;
9565dee3d2SJames Wright }
9665dee3d2SJames Wright 
97cbe60e31SLeila Ghaffari // *****************************************************************************
9804e40bb6SJeremy L Thompson // This QFunction implements the following formulation of Navier-Stokes with explicit time stepping method
993a8779fbSJames Wright //
10004e40bb6SJeremy L Thompson // This is 3D compressible Navier-Stokes in conservation form with state variables of density, momentum density, and total energy density.
1013a8779fbSJames Wright //
1023a8779fbSJames Wright // State Variables: q = ( rho, U1, U2, U3, E )
1033a8779fbSJames Wright //   rho - Mass Density
1043a8779fbSJames Wright //   Ui  - Momentum Density,      Ui = rho ui
1053a8779fbSJames Wright //   E   - Total Energy Density,  E  = rho (cv T + (u u)/2 + g z)
1063a8779fbSJames Wright //
1073a8779fbSJames Wright // Navier-Stokes Equations:
1083a8779fbSJames Wright //   drho/dt + div( U )                               = 0
1093a8779fbSJames Wright //   dU/dt   + div( rho (u x u) + P I3 ) + rho g khat = div( Fu )
1103a8779fbSJames Wright //   dE/dt   + div( (E + P) u )                       = div( Fe )
1113a8779fbSJames Wright //
1123a8779fbSJames Wright // Viscous Stress:
1133a8779fbSJames Wright //   Fu = mu (grad( u ) + grad( u )^T + lambda div ( u ) I3)
1143a8779fbSJames Wright //
1153a8779fbSJames Wright // Thermal Stress:
1163a8779fbSJames Wright //   Fe = u Fu + k grad( T )
117bb8a0c61SJames Wright // Equation of State
1183a8779fbSJames Wright //   P = (gamma - 1) (E - rho (u u) / 2 - rho g z)
1193a8779fbSJames Wright //
1203a8779fbSJames Wright // Stabilization:
1213a8779fbSJames Wright //   Tau = diag(TauC, TauM, TauM, TauM, TauE)
1223a8779fbSJames Wright //     f1 = rho  sqrt(ui uj gij)
1233a8779fbSJames Wright //     gij = dXi/dX * dXi/dX
1243a8779fbSJames Wright //     TauC = Cc f1 / (8 gii)
1253a8779fbSJames Wright //     TauM = min( 1 , 1 / f1 )
1263a8779fbSJames Wright //     TauE = TauM / (Ce cv)
1273a8779fbSJames Wright //
1283a8779fbSJames Wright //  SU   = Galerkin + grad(v) . ( Ai^T * Tau * (Aj q,j) )
1293a8779fbSJames Wright //
1303a8779fbSJames Wright // Constants:
1313a8779fbSJames Wright //   lambda = - 2 / 3,  From Stokes hypothesis
1323a8779fbSJames Wright //   mu              ,  Dynamic viscosity
1333a8779fbSJames Wright //   k               ,  Thermal conductivity
1343a8779fbSJames Wright //   cv              ,  Specific heat, constant volume
1353a8779fbSJames Wright //   cp              ,  Specific heat, constant pressure
1363a8779fbSJames Wright //   g               ,  Gravity
1373a8779fbSJames Wright //   gamma  = cp / cv,  Specific heat ratio
1383a8779fbSJames Wright //
13904e40bb6SJeremy L Thompson // We require the product of the inverse of the Jacobian (dXdx_j,k) and its transpose (dXdx_k,j) to properly compute integrals of the form: int( gradv
14004e40bb6SJeremy L Thompson // gradu )
1413a8779fbSJames Wright // *****************************************************************************
1422b916ea7SJeremy L Thompson CEED_QFUNCTION(RHSFunction_Newtonian)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
1433d65b166SJames Wright   const CeedScalar(*q)[CEED_Q_VLA]   = (const CeedScalar(*)[CEED_Q_VLA])in[0];
14487bd45e7SJames Wright   const CeedScalar(*Grad_q)          = in[1];
145ade49511SJames Wright   const CeedScalar(*q_data)          = in[2];
1463d65b166SJames Wright   CeedScalar(*v)[CEED_Q_VLA]         = (CeedScalar(*)[CEED_Q_VLA])out[0];
1473d65b166SJames Wright   CeedScalar(*Grad_v)[5][CEED_Q_VLA] = (CeedScalar(*)[5][CEED_Q_VLA])out[1];
1483a8779fbSJames Wright 
1493a8779fbSJames Wright   NewtonianIdealGasContext context = (NewtonianIdealGasContext)ctx;
150bb8a0c61SJames Wright   const CeedScalar        *g       = context->g;
151bb8a0c61SJames Wright   const CeedScalar         dt      = context->dt;
1523a8779fbSJames Wright 
1533d65b166SJames Wright   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
154ade49511SJames Wright     CeedScalar U[5], wdetJ, dXdx[3][3];
155c1a52365SJed Brown     for (int j = 0; j < 5; j++) U[j] = q[j][i];
1561be49596SJames Wright     QdataUnpack_3D(Q, i, q_data, &wdetJ, dXdx);
157edcfef1bSKenneth E. Jansen     State s = StateFromU(context, U);
158c1a52365SJed Brown 
159c1a52365SJed Brown     State grad_s[3];
160edcfef1bSKenneth E. Jansen     StatePhysicalGradientFromReference(Q, i, context, s, STATEVAR_CONSERVATIVE, Grad_q, dXdx, grad_s);
161c1a52365SJed Brown 
162c1a52365SJed Brown     CeedScalar strain_rate[6], kmstress[6], stress[3][3], Fe[3];
16340a33f2dSJames Wright     KMStrainRate_State(grad_s, strain_rate);
164c1a52365SJed Brown     NewtonianStress(context, strain_rate, kmstress);
165c1a52365SJed Brown     KMUnpack(kmstress, stress);
166c1a52365SJed Brown     ViscousEnergyFlux(context, s.Y, grad_s, stress, Fe);
167c1a52365SJed Brown 
168c1a52365SJed Brown     StateConservative F_inviscid[3];
169c1a52365SJed Brown     FluxInviscid(context, s, F_inviscid);
170c1a52365SJed Brown 
171c1a52365SJed Brown     // Total flux
172c1a52365SJed Brown     CeedScalar Flux[5][3];
173d1b9ef12SLeila Ghaffari     FluxTotal(F_inviscid, stress, Fe, Flux);
174c1a52365SJed Brown 
1757523f6aaSJames Wright     for (CeedInt j = 0; j < 5; j++) {
1767523f6aaSJames Wright       for (CeedInt k = 0; k < 3; k++) Grad_v[k][j][i] = wdetJ * (dXdx[k][0] * Flux[j][0] + dXdx[k][1] * Flux[j][1] + dXdx[k][2] * Flux[j][2]);
1772b916ea7SJeremy L Thompson     }
178c1a52365SJed Brown 
17960dbb574SKenneth E. Jansen     const CeedScalar body_force[5] = {0, s.U.density * g[0], s.U.density * g[1], s.U.density * g[2], Dot3(s.U.momentum, g)};
1802b916ea7SJeremy L Thompson     for (int j = 0; j < 5; j++) v[j][i] = wdetJ * body_force[j];
1813a8779fbSJames Wright 
182d1b9ef12SLeila Ghaffari     // -- Stabilization method: none (Galerkin), SU, or SUPG
183d1b9ef12SLeila Ghaffari     CeedScalar Tau_d[3], stab[5][3], U_dot[5] = {0};
184d1b9ef12SLeila Ghaffari     Tau_diagPrim(context, s, dXdx, dt, Tau_d);
185edcfef1bSKenneth E. Jansen     Stabilization(context, s, Tau_d, grad_s, U_dot, body_force, stab);
1863a8779fbSJames Wright 
1872b916ea7SJeremy L Thompson     for (CeedInt j = 0; j < 5; j++) {
1882b916ea7SJeremy L Thompson       for (CeedInt k = 0; k < 3; k++) Grad_v[k][j][i] -= wdetJ * (stab[j][0] * dXdx[k][0] + stab[j][1] * dXdx[k][1] + stab[j][2] * dXdx[k][2]);
1892b916ea7SJeremy L Thompson     }
190b193fadcSJames Wright   }
1913a8779fbSJames Wright   return 0;
1923a8779fbSJames Wright }
1933a8779fbSJames Wright 
1943a8779fbSJames Wright // *****************************************************************************
19504e40bb6SJeremy L Thompson // This QFunction implements the Navier-Stokes equations (mentioned above) with implicit time stepping method
1963a8779fbSJames Wright //
1973a8779fbSJames Wright //  SU   = Galerkin + grad(v) . ( Ai^T * Tau * (Aj q,j) )
1983a8779fbSJames Wright //  SUPG = Galerkin + grad(v) . ( Ai^T * Tau * (q_dot + Aj q,j - body force) )
19904e40bb6SJeremy L Thompson //                                       (diffusive terms will be added later)
2003a8779fbSJames Wright // *****************************************************************************
2018fff8293SJames Wright CEED_QFUNCTION_HELPER int IFunction_Newtonian(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out, StateVariable state_var) {
2023d65b166SJames Wright   const CeedScalar(*q)[CEED_Q_VLA]     = (const CeedScalar(*)[CEED_Q_VLA])in[0];
20387bd45e7SJames Wright   const CeedScalar(*Grad_q)            = in[1];
2043d65b166SJames Wright   const CeedScalar(*q_dot)[CEED_Q_VLA] = (const CeedScalar(*)[CEED_Q_VLA])in[2];
205ade49511SJames Wright   const CeedScalar(*q_data)            = in[3];
2063d65b166SJames Wright   const CeedScalar(*x)[CEED_Q_VLA]     = (const CeedScalar(*)[CEED_Q_VLA])in[4];
2073d65b166SJames Wright   CeedScalar(*v)[CEED_Q_VLA]           = (CeedScalar(*)[CEED_Q_VLA])out[0];
2083d65b166SJames Wright   CeedScalar(*Grad_v)[5][CEED_Q_VLA]   = (CeedScalar(*)[5][CEED_Q_VLA])out[1];
209ade49511SJames Wright   CeedScalar(*jac_data)                = out[2];
2103d65b166SJames Wright 
2113a8779fbSJames Wright   NewtonianIdealGasContext context = (NewtonianIdealGasContext)ctx;
212bb8a0c61SJames Wright   const CeedScalar        *g       = context->g;
213bb8a0c61SJames Wright   const CeedScalar         dt      = context->dt;
214*fcb2c22aSJames Wright   const CeedScalar         P0      = context->idl_pressure;
2153a8779fbSJames Wright 
2163d65b166SJames Wright   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
2173d65b166SJames Wright     const CeedScalar qi[5]  = {q[0][i], q[1][i], q[2][i], q[3][i], q[4][i]};
218c1a52365SJed Brown     const CeedScalar x_i[3] = {x[0][i], x[1][i], x[2][i]};
219edcfef1bSKenneth E. Jansen     const State      s      = StateFromQ(context, qi, state_var);
220c1a52365SJed Brown 
221ade49511SJames Wright     CeedScalar wdetJ, dXdx[3][3];
222ade49511SJames Wright     QdataUnpack_3D(Q, i, q_data, &wdetJ, dXdx);
223c1a52365SJed Brown     State grad_s[3];
224edcfef1bSKenneth E. Jansen     StatePhysicalGradientFromReference(Q, i, context, s, state_var, Grad_q, dXdx, grad_s);
225c1a52365SJed Brown 
226c1a52365SJed Brown     CeedScalar strain_rate[6], kmstress[6], stress[3][3], Fe[3];
22740a33f2dSJames Wright     KMStrainRate_State(grad_s, strain_rate);
228c1a52365SJed Brown     NewtonianStress(context, strain_rate, kmstress);
229c1a52365SJed Brown     KMUnpack(kmstress, stress);
230c1a52365SJed Brown     ViscousEnergyFlux(context, s.Y, grad_s, stress, Fe);
231c1a52365SJed Brown 
232c1a52365SJed Brown     StateConservative F_inviscid[3];
233c1a52365SJed Brown     FluxInviscid(context, s, F_inviscid);
234c1a52365SJed Brown 
235c1a52365SJed Brown     // Total flux
236c1a52365SJed Brown     CeedScalar Flux[5][3];
237d1b9ef12SLeila Ghaffari     FluxTotal(F_inviscid, stress, Fe, Flux);
238c1a52365SJed Brown 
2397523f6aaSJames Wright     for (CeedInt j = 0; j < 5; j++) {
2407523f6aaSJames Wright       for (CeedInt k = 0; k < 3; k++) {
2417523f6aaSJames Wright         Grad_v[k][j][i] = -wdetJ * (dXdx[k][0] * Flux[j][0] + dXdx[k][1] * Flux[j][1] + dXdx[k][2] * Flux[j][2]);
2423d65b166SJames Wright       }
2432b916ea7SJeremy L Thompson     }
244c1a52365SJed Brown 
24560dbb574SKenneth E. Jansen     const CeedScalar body_force[5] = {0, s.U.density * g[0], s.U.density * g[1], s.U.density * g[2], Dot3(s.U.momentum, g)};
2463a8779fbSJames Wright 
247d1b9ef12SLeila Ghaffari     // -- Stabilization method: none (Galerkin), SU, or SUPG
248edcfef1bSKenneth E. Jansen     CeedScalar Tau_d[3], stab[5][3], U_dot[5] = {0}, qi_dot[5];
24976555becSJames Wright     for (int j = 0; j < 5; j++) qi_dot[j] = q_dot[j][i];
250edcfef1bSKenneth E. Jansen     State s_dot = StateFromQ_fwd(context, s, qi_dot, state_var);
25176555becSJames Wright     UnpackState_U(s_dot.U, U_dot);
25276555becSJames Wright 
2532b916ea7SJeremy L Thompson     for (CeedInt j = 0; j < 5; j++) v[j][i] = wdetJ * (U_dot[j] - body_force[j]);
254e7754af5SKenneth E. Jansen     if (context->idl_enable) {
25594a7b3d2SKenneth E. Jansen       const CeedScalar sigma = LinearRampCoefficient(context->idl_amplitude, context->idl_length, context->idl_start, x_i[0]);
25694a7b3d2SKenneth E. Jansen       StoredValuesPack(Q, i, 14, 1, &sigma, jac_data);
257e7754af5SKenneth E. Jansen       CeedScalar damp_state[5] = {s.Y.pressure - P0, 0, 0, 0, 0}, idl_residual[5] = {0.};
25894a7b3d2SKenneth E. Jansen       InternalDampingLayer(context, s, sigma, damp_state, idl_residual);
259e7754af5SKenneth E. Jansen       for (int j = 0; j < 5; j++) v[j][i] += wdetJ * idl_residual[j];
260e7754af5SKenneth E. Jansen     }
261e7754af5SKenneth E. Jansen 
262d1b9ef12SLeila Ghaffari     Tau_diagPrim(context, s, dXdx, dt, Tau_d);
263edcfef1bSKenneth E. Jansen     Stabilization(context, s, Tau_d, grad_s, U_dot, body_force, stab);
2643a8779fbSJames Wright 
2652b916ea7SJeremy L Thompson     for (CeedInt j = 0; j < 5; j++) {
2663d65b166SJames Wright       for (CeedInt k = 0; k < 3; k++) {
2673d65b166SJames Wright         Grad_v[k][j][i] += wdetJ * (stab[j][0] * dXdx[k][0] + stab[j][1] * dXdx[k][1] + stab[j][2] * dXdx[k][2]);
2683d65b166SJames Wright       }
2692b916ea7SJeremy L Thompson     }
270ade49511SJames Wright     StoredValuesPack(Q, i, 0, 5, qi, jac_data);
271ade49511SJames Wright     StoredValuesPack(Q, i, 5, 6, kmstress, jac_data);
272ade49511SJames Wright     StoredValuesPack(Q, i, 11, 3, Tau_d, jac_data);
273b193fadcSJames Wright   }
2743a8779fbSJames Wright   return 0;
2753a8779fbSJames Wright }
276f0b65372SJed Brown 
2772b916ea7SJeremy L Thompson CEED_QFUNCTION(IFunction_Newtonian_Conserv)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
2788fff8293SJames Wright   return IFunction_Newtonian(ctx, Q, in, out, STATEVAR_CONSERVATIVE);
27976555becSJames Wright }
28076555becSJames Wright 
2812b916ea7SJeremy L Thompson CEED_QFUNCTION(IFunction_Newtonian_Prim)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
2828fff8293SJames Wright   return IFunction_Newtonian(ctx, Q, in, out, STATEVAR_PRIMITIVE);
28376555becSJames Wright }
28476555becSJames Wright 
285cbe60e31SLeila Ghaffari // *****************************************************************************
28604e40bb6SJeremy L Thompson // This QFunction implements the jacobian of the Navier-Stokes equations for implicit time stepping method.
287cbe60e31SLeila Ghaffari // *****************************************************************************
2888fff8293SJames Wright CEED_QFUNCTION_HELPER int IJacobian_Newtonian(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out, StateVariable state_var) {
2893d65b166SJames Wright   const CeedScalar(*dq)[CEED_Q_VLA]  = (const CeedScalar(*)[CEED_Q_VLA])in[0];
29087bd45e7SJames Wright   const CeedScalar(*Grad_dq)         = in[1];
291ade49511SJames Wright   const CeedScalar(*q_data)          = in[2];
29294a7b3d2SKenneth E. Jansen   const CeedScalar(*jac_data)        = in[3];
2933d65b166SJames Wright   CeedScalar(*v)[CEED_Q_VLA]         = (CeedScalar(*)[CEED_Q_VLA])out[0];
2943d65b166SJames Wright   CeedScalar(*Grad_v)[5][CEED_Q_VLA] = (CeedScalar(*)[5][CEED_Q_VLA])out[1];
2953d65b166SJames Wright 
296f0b65372SJed Brown   NewtonianIdealGasContext context = (NewtonianIdealGasContext)ctx;
297f0b65372SJed Brown   const CeedScalar        *g       = context->g;
298f0b65372SJed Brown 
2993d65b166SJames Wright   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
300ade49511SJames Wright     CeedScalar wdetJ, dXdx[3][3];
301ade49511SJames Wright     QdataUnpack_3D(Q, i, q_data, &wdetJ, dXdx);
302f0b65372SJed Brown 
3038789e95fSJames Wright     CeedScalar qi[5], kmstress[6], Tau_d[3];
304ade49511SJames Wright     StoredValuesUnpack(Q, i, 0, 5, jac_data, qi);
305ade49511SJames Wright     StoredValuesUnpack(Q, i, 5, 6, jac_data, kmstress);
306ade49511SJames Wright     StoredValuesUnpack(Q, i, 11, 3, jac_data, Tau_d);
307edcfef1bSKenneth E. Jansen     State s = StateFromQ(context, qi, state_var);
308f0b65372SJed Brown 
309edcfef1bSKenneth E. Jansen     CeedScalar dqi[5];
31076555becSJames Wright     for (int j = 0; j < 5; j++) dqi[j] = dq[j][i];
311edcfef1bSKenneth E. Jansen     State ds = StateFromQ_fwd(context, s, dqi, state_var);
312f0b65372SJed Brown 
313f0b65372SJed Brown     State grad_ds[3];
314edcfef1bSKenneth E. Jansen     StatePhysicalGradientFromReference(Q, i, context, s, state_var, Grad_dq, dXdx, grad_ds);
315f0b65372SJed Brown 
316f0b65372SJed Brown     CeedScalar dstrain_rate[6], dkmstress[6], stress[3][3], dstress[3][3], dFe[3];
31740a33f2dSJames Wright     KMStrainRate_State(grad_ds, dstrain_rate);
318f0b65372SJed Brown     NewtonianStress(context, dstrain_rate, dkmstress);
319f0b65372SJed Brown     KMUnpack(dkmstress, dstress);
320f0b65372SJed Brown     KMUnpack(kmstress, stress);
321f0b65372SJed Brown     ViscousEnergyFlux_fwd(context, s.Y, ds.Y, grad_ds, stress, dstress, dFe);
322f0b65372SJed Brown 
323f0b65372SJed Brown     StateConservative dF_inviscid[3];
324f0b65372SJed Brown     FluxInviscid_fwd(context, s, ds, dF_inviscid);
325f0b65372SJed Brown 
326f0b65372SJed Brown     // Total flux
327f0b65372SJed Brown     CeedScalar dFlux[5][3];
328d1b9ef12SLeila Ghaffari     FluxTotal(dF_inviscid, dstress, dFe, dFlux);
329f0b65372SJed Brown 
33022387d3aSJames Wright     for (int j = 0; j < 5; j++) {
33122387d3aSJames Wright       for (int k = 0; k < 3; k++) Grad_v[k][j][i] = -wdetJ * (dXdx[k][0] * dFlux[j][0] + dXdx[k][1] * dFlux[j][1] + dXdx[k][2] * dFlux[j][2]);
3322b916ea7SJeremy L Thompson     }
333f0b65372SJed Brown 
33460dbb574SKenneth E. Jansen     const CeedScalar dbody_force[5] = {0, ds.U.density * g[0], ds.U.density * g[1], ds.U.density * g[2], Dot3(ds.U.momentum, g)};
33576555becSJames Wright     CeedScalar       dU[5]          = {0.};
33676555becSJames Wright     UnpackState_U(ds.U, dU);
3372b916ea7SJeremy L Thompson     for (int j = 0; j < 5; j++) v[j][i] = wdetJ * (context->ijacobian_time_shift * dU[j] - dbody_force[j]);
338f0b65372SJed Brown 
339e7754af5SKenneth E. Jansen     if (context->idl_enable) {
34094a7b3d2SKenneth E. Jansen       const CeedScalar sigma         = jac_data[14 * Q + i];
341e7754af5SKenneth E. Jansen       CeedScalar       damp_state[5] = {ds.Y.pressure, 0, 0, 0, 0}, idl_residual[5] = {0.};
342e7754af5SKenneth E. Jansen       // This is a Picard-type linearization of the damping and could be replaced by an InternalDampingLayer_fwd that uses s and ds.
34394a7b3d2SKenneth E. Jansen       InternalDampingLayer(context, s, sigma, damp_state, idl_residual);
344e7754af5SKenneth E. Jansen       for (int j = 0; j < 5; j++) v[j][i] += wdetJ * idl_residual[j];
345e7754af5SKenneth E. Jansen     }
346e7754af5SKenneth E. Jansen 
347d1b9ef12SLeila Ghaffari     // -- Stabilization method: none (Galerkin), SU, or SUPG
348d1b9ef12SLeila Ghaffari     CeedScalar dstab[5][3], U_dot[5] = {0};
349d1b9ef12SLeila Ghaffari     for (CeedInt j = 0; j < 5; j++) U_dot[j] = context->ijacobian_time_shift * dU[j];
350edcfef1bSKenneth E. Jansen     Stabilization(context, s, Tau_d, grad_ds, U_dot, dbody_force, dstab);
351d1b9ef12SLeila Ghaffari 
3522b916ea7SJeremy L Thompson     for (int j = 0; j < 5; j++) {
3532b916ea7SJeremy L Thompson       for (int k = 0; k < 3; k++) Grad_v[k][j][i] += wdetJ * (dstab[j][0] * dXdx[k][0] + dstab[j][1] * dXdx[k][1] + dstab[j][2] * dXdx[k][2]);
3542b916ea7SJeremy L Thompson     }
355b193fadcSJames Wright   }
356f0b65372SJed Brown   return 0;
357f0b65372SJed Brown }
3588085925cSJames Wright 
3592b916ea7SJeremy L Thompson CEED_QFUNCTION(IJacobian_Newtonian_Conserv)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
3608fff8293SJames Wright   return IJacobian_Newtonian(ctx, Q, in, out, STATEVAR_CONSERVATIVE);
36176555becSJames Wright }
36276555becSJames Wright 
3632b916ea7SJeremy L Thompson CEED_QFUNCTION(IJacobian_Newtonian_Prim)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
3648fff8293SJames Wright   return IJacobian_Newtonian(ctx, Q, in, out, STATEVAR_PRIMITIVE);
36576555becSJames Wright }
36676555becSJames Wright 
367d1b9ef12SLeila Ghaffari // *****************************************************************************
3688085925cSJames Wright // Compute boundary integral (ie. for strongly set inflows)
369d1b9ef12SLeila Ghaffari // *****************************************************************************
3708fff8293SJames Wright CEED_QFUNCTION_HELPER int BoundaryIntegral(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out, StateVariable state_var) {
3714b96a86bSJames Wright   const NewtonianIdealGasContext context = (NewtonianIdealGasContext)ctx;
3723d65b166SJames Wright   const CeedScalar(*q)[CEED_Q_VLA]       = (const CeedScalar(*)[CEED_Q_VLA])in[0];
37387bd45e7SJames Wright   const CeedScalar(*Grad_q)              = in[1];
374ade49511SJames Wright   const CeedScalar(*q_data_sur)          = in[2];
3753d65b166SJames Wright   CeedScalar(*v)[CEED_Q_VLA]             = (CeedScalar(*)[CEED_Q_VLA])out[0];
3764b96a86bSJames Wright   CeedScalar(*jac_data_sur)              = context->is_implicit ? out[1] : NULL;
3778085925cSJames Wright 
378d3b25f3aSJames Wright   const bool is_implicit = context->is_implicit;
3798085925cSJames Wright 
3802b916ea7SJeremy L Thompson   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
38141e73928SJames Wright     const CeedScalar qi[5] = {q[0][i], q[1][i], q[2][i], q[3][i], q[4][i]};
382edcfef1bSKenneth E. Jansen     State            s     = StateFromQ(context, qi, state_var);
3838085925cSJames Wright 
384ade49511SJames Wright     CeedScalar wdetJb, dXdx[2][3], norm[3];
385ade49511SJames Wright     QdataBoundaryUnpack_3D(Q, i, q_data_sur, &wdetJb, dXdx, norm);
386ade49511SJames Wright     wdetJb *= is_implicit ? -1. : 1.;
3878085925cSJames Wright 
388d3b25f3aSJames Wright     State grad_s[3];
389edcfef1bSKenneth E. Jansen     StatePhysicalGradientFromReference_Boundary(Q, i, context, s, state_var, Grad_q, dXdx, grad_s);
3908085925cSJames Wright 
391d3b25f3aSJames Wright     CeedScalar strain_rate[6], kmstress[6], stress[3][3], Fe[3];
39240a33f2dSJames Wright     KMStrainRate_State(grad_s, strain_rate);
393d3b25f3aSJames Wright     NewtonianStress(context, strain_rate, kmstress);
394d3b25f3aSJames Wright     KMUnpack(kmstress, stress);
395d3b25f3aSJames Wright     ViscousEnergyFlux(context, s.Y, grad_s, stress, Fe);
396d3b25f3aSJames Wright 
397d3b25f3aSJames Wright     StateConservative F_inviscid[3];
398d3b25f3aSJames Wright     FluxInviscid(context, s, F_inviscid);
399d3b25f3aSJames Wright 
400c5740391SJames Wright     CeedScalar Flux[5];
401c5740391SJames Wright     FluxTotal_Boundary(F_inviscid, stress, Fe, norm, Flux);
402d3b25f3aSJames Wright 
403c5740391SJames Wright     for (CeedInt j = 0; j < 5; j++) v[j][i] = -wdetJb * Flux[j];
4048085925cSJames Wright 
4054b96a86bSJames Wright     if (is_implicit) {
406ade49511SJames Wright       StoredValuesPack(Q, i, 0, 5, qi, jac_data_sur);
407ade49511SJames Wright       StoredValuesPack(Q, i, 5, 6, kmstress, jac_data_sur);
4088085925cSJames Wright     }
4094b96a86bSJames Wright   }
4108085925cSJames Wright   return 0;
4118085925cSJames Wright }
4128085925cSJames Wright 
4132b916ea7SJeremy L Thompson CEED_QFUNCTION(BoundaryIntegral_Conserv)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
4148fff8293SJames Wright   return BoundaryIntegral(ctx, Q, in, out, STATEVAR_CONSERVATIVE);
415d4559bbeSJames Wright }
416d4559bbeSJames Wright 
4172b916ea7SJeremy L Thompson CEED_QFUNCTION(BoundaryIntegral_Prim)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
4188fff8293SJames Wright   return BoundaryIntegral(ctx, Q, in, out, STATEVAR_PRIMITIVE);
419d4559bbeSJames Wright }
420d4559bbeSJames Wright 
421d1b9ef12SLeila Ghaffari // *****************************************************************************
42268ae065aSJames Wright // Jacobian for "set nothing" boundary integral
423d1b9ef12SLeila Ghaffari // *****************************************************************************
4242b916ea7SJeremy L Thompson CEED_QFUNCTION_HELPER int BoundaryIntegral_Jacobian(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out,
4258fff8293SJames Wright                                                     StateVariable state_var) {
4263d65b166SJames Wright   const CeedScalar(*dq)[CEED_Q_VLA] = (const CeedScalar(*)[CEED_Q_VLA])in[0];
42787bd45e7SJames Wright   const CeedScalar(*Grad_dq)        = in[1];
428ade49511SJames Wright   const CeedScalar(*q_data_sur)     = in[2];
429c1484fadSKenneth E. Jansen   const CeedScalar(*jac_data_sur)   = in[4];
43068ae065aSJames Wright   CeedScalar(*v)[CEED_Q_VLA]        = (CeedScalar(*)[CEED_Q_VLA])out[0];
43168ae065aSJames Wright 
43268ae065aSJames Wright   const NewtonianIdealGasContext context     = (NewtonianIdealGasContext)ctx;
433ade49511SJames Wright   const bool                     is_implicit = context->is_implicit;
43468ae065aSJames Wright 
4353d65b166SJames Wright   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
436ade49511SJames Wright     CeedScalar wdetJb, dXdx[2][3], norm[3];
437ade49511SJames Wright     QdataBoundaryUnpack_3D(Q, i, q_data_sur, &wdetJb, dXdx, norm);
438ade49511SJames Wright     wdetJb *= is_implicit ? -1. : 1.;
43968ae065aSJames Wright 
440edcfef1bSKenneth E. Jansen     CeedScalar qi[5], kmstress[6], dqi[5];
441ade49511SJames Wright     StoredValuesUnpack(Q, i, 0, 5, jac_data_sur, qi);
442ade49511SJames Wright     StoredValuesUnpack(Q, i, 5, 6, jac_data_sur, kmstress);
44341e73928SJames Wright     for (int j = 0; j < 5; j++) dqi[j] = dq[j][i];
4443934e2b1SJames Wright 
445edcfef1bSKenneth E. Jansen     State s  = StateFromQ(context, qi, state_var);
446edcfef1bSKenneth E. Jansen     State ds = StateFromQ_fwd(context, s, dqi, state_var);
44768ae065aSJames Wright 
44868ae065aSJames Wright     State grad_ds[3];
449edcfef1bSKenneth E. Jansen     StatePhysicalGradientFromReference_Boundary(Q, i, context, s, state_var, Grad_dq, dXdx, grad_ds);
45068ae065aSJames Wright 
45168ae065aSJames Wright     CeedScalar dstrain_rate[6], dkmstress[6], stress[3][3], dstress[3][3], dFe[3];
45240a33f2dSJames Wright     KMStrainRate_State(grad_ds, dstrain_rate);
45368ae065aSJames Wright     NewtonianStress(context, dstrain_rate, dkmstress);
45468ae065aSJames Wright     KMUnpack(dkmstress, dstress);
45568ae065aSJames Wright     KMUnpack(kmstress, stress);
45668ae065aSJames Wright     ViscousEnergyFlux_fwd(context, s.Y, ds.Y, grad_ds, stress, dstress, dFe);
45768ae065aSJames Wright 
45868ae065aSJames Wright     StateConservative dF_inviscid[3];
45968ae065aSJames Wright     FluxInviscid_fwd(context, s, ds, dF_inviscid);
46068ae065aSJames Wright 
461c5740391SJames Wright     CeedScalar dFlux[5];
462c5740391SJames Wright     FluxTotal_Boundary(dF_inviscid, dstress, dFe, norm, dFlux);
46368ae065aSJames Wright 
464c5740391SJames Wright     for (int j = 0; j < 5; j++) v[j][i] = -wdetJb * dFlux[j];
465512c8ec7SJames Wright   }
46668ae065aSJames Wright   return 0;
46768ae065aSJames Wright }
46868ae065aSJames Wright 
4692b916ea7SJeremy L Thompson CEED_QFUNCTION(BoundaryIntegral_Jacobian_Conserv)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
4708fff8293SJames Wright   return BoundaryIntegral_Jacobian(ctx, Q, in, out, STATEVAR_CONSERVATIVE);
471d4559bbeSJames Wright }
472d4559bbeSJames Wright 
4732b916ea7SJeremy L Thompson CEED_QFUNCTION(BoundaryIntegral_Jacobian_Prim)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
4748fff8293SJames Wright   return BoundaryIntegral_Jacobian(ctx, Q, in, out, STATEVAR_PRIMITIVE);
475d4559bbeSJames Wright }
476