xref: /honee/src/setuplibceed.c (revision 25988f00c7bd68890a4c94ccf9c92b2eb5eb8458)
1727da7e7SJeremy L Thompson // Copyright (c) 2017-2022, Lawrence Livermore National Security, LLC and other CEED contributors.
2727da7e7SJeremy L Thompson // All Rights Reserved. See the top-level LICENSE and NOTICE files for details.
3a515125bSLeila Ghaffari //
4727da7e7SJeremy L Thompson // SPDX-License-Identifier: BSD-2-Clause
5a515125bSLeila Ghaffari //
6727da7e7SJeremy L Thompson // This file is part of CEED:  http://github.com/ceed
7a515125bSLeila Ghaffari 
8a515125bSLeila Ghaffari /// @file
9a515125bSLeila Ghaffari /// Setup libCEED for Navier-Stokes example using PETSc
10a515125bSLeila Ghaffari 
11a515125bSLeila Ghaffari #include "../navierstokes.h"
12a515125bSLeila Ghaffari 
13a515125bSLeila Ghaffari // Utility function - essential BC dofs are encoded in closure indices as -(i+1).
14a515125bSLeila Ghaffari PetscInt Involute(PetscInt i) {
15a515125bSLeila Ghaffari   return i >= 0 ? i : -(i+1);
16a515125bSLeila Ghaffari }
17a515125bSLeila Ghaffari 
18a515125bSLeila Ghaffari // Utility function to create local CEED restriction
196b1ccf21SJeremy L Thompson PetscErrorCode CreateRestrictionFromPlex(Ceed ceed, DM dm, CeedInt height,
206b1ccf21SJeremy L Thompson     DMLabel domain_label, CeedInt value, CeedElemRestriction *elem_restr) {
216b1ccf21SJeremy L Thompson   PetscInt num_elem, elem_size, num_dof, num_comp, *elem_restr_offsets;
22a515125bSLeila Ghaffari   PetscErrorCode ierr;
236b1ccf21SJeremy L Thompson 
24a515125bSLeila Ghaffari   PetscFunctionBeginUser;
256b1ccf21SJeremy L Thompson   ierr = DMPlexGetLocalOffsets(dm, domain_label, value, height, 0, &num_elem,
266b1ccf21SJeremy L Thompson                                &elem_size, &num_comp, &num_dof, &elem_restr_offsets);
276b1ccf21SJeremy L Thompson   CHKERRQ(ierr);
28a515125bSLeila Ghaffari 
296b1ccf21SJeremy L Thompson   CeedElemRestrictionCreate(ceed, num_elem, elem_size, num_comp,
306b1ccf21SJeremy L Thompson                             1, num_dof, CEED_MEM_HOST, CEED_COPY_VALUES,
316b1ccf21SJeremy L Thompson                             elem_restr_offsets, elem_restr);
326b1ccf21SJeremy L Thompson   ierr = PetscFree(elem_restr_offsets); CHKERRQ(ierr);
33a515125bSLeila Ghaffari 
34a515125bSLeila Ghaffari   PetscFunctionReturn(0);
35a515125bSLeila Ghaffari }
36a515125bSLeila Ghaffari 
37a515125bSLeila Ghaffari // Utility function to get Ceed Restriction for each domain
38a515125bSLeila Ghaffari PetscErrorCode GetRestrictionForDomain(Ceed ceed, DM dm, CeedInt height,
39a515125bSLeila Ghaffari                                        DMLabel domain_label, PetscInt value,
406b1ccf21SJeremy L Thompson                                        CeedInt Q, CeedInt q_data_size,
41a515125bSLeila Ghaffari                                        CeedElemRestriction *elem_restr_q,
42a515125bSLeila Ghaffari                                        CeedElemRestriction *elem_restr_x,
43a515125bSLeila Ghaffari                                        CeedElemRestriction *elem_restr_qd_i) {
44a515125bSLeila Ghaffari   DM             dm_coord;
45a515125bSLeila Ghaffari   CeedInt        dim, loc_num_elem;
46a515125bSLeila Ghaffari   CeedInt        Q_dim;
47395c96d3SJed Brown   CeedElemRestriction elem_restr_tmp;
48a515125bSLeila Ghaffari   PetscErrorCode ierr;
49a515125bSLeila Ghaffari   PetscFunctionBeginUser;
50a515125bSLeila Ghaffari 
51a515125bSLeila Ghaffari   ierr = DMGetDimension(dm, &dim); CHKERRQ(ierr);
52a515125bSLeila Ghaffari   dim -= height;
53a515125bSLeila Ghaffari   Q_dim = CeedIntPow(Q, dim);
54395c96d3SJed Brown   ierr = CreateRestrictionFromPlex(ceed, dm, height, domain_label, value,
55395c96d3SJed Brown                                    &elem_restr_tmp);
56395c96d3SJed Brown   CHKERRQ(ierr);
57395c96d3SJed Brown   if (elem_restr_q) *elem_restr_q = elem_restr_tmp;
58395c96d3SJed Brown   if (elem_restr_x) {
59cac8aa24SJed Brown     ierr = DMGetCellCoordinateDM(dm, &dm_coord); CHKERRQ(ierr);
60cac8aa24SJed Brown     if (!dm_coord) {
61a515125bSLeila Ghaffari       ierr = DMGetCoordinateDM(dm, &dm_coord); CHKERRQ(ierr);
62cac8aa24SJed Brown     }
63a515125bSLeila Ghaffari     ierr = DMPlexSetClosurePermutationTensor(dm_coord, PETSC_DETERMINE, NULL);
64a515125bSLeila Ghaffari     CHKERRQ(ierr);
656b1ccf21SJeremy L Thompson     ierr = CreateRestrictionFromPlex(ceed, dm_coord, height, domain_label, value,
666b1ccf21SJeremy L Thompson                                      elem_restr_x);
676b1ccf21SJeremy L Thompson     CHKERRQ(ierr);
68395c96d3SJed Brown   }
69395c96d3SJed Brown   if (elem_restr_qd_i) {
70395c96d3SJed Brown     CeedElemRestrictionGetNumElements(elem_restr_tmp, &loc_num_elem);
71a515125bSLeila Ghaffari     CeedElemRestrictionCreateStrided(ceed, loc_num_elem, Q_dim,
72a515125bSLeila Ghaffari                                      q_data_size, q_data_size*loc_num_elem*Q_dim,
73a515125bSLeila Ghaffari                                      CEED_STRIDES_BACKEND, elem_restr_qd_i);
74395c96d3SJed Brown   }
75395c96d3SJed Brown   if (!elem_restr_q) CeedElemRestrictionDestroy(&elem_restr_tmp);
76a515125bSLeila Ghaffari   PetscFunctionReturn(0);
77a515125bSLeila Ghaffari }
78a515125bSLeila Ghaffari 
79368c645fSJames Wright PetscErrorCode AddBCSubOperator(Ceed ceed, DM dm, CeedData ceed_data,
80368c645fSJames Wright                                 DMLabel domain_label, PetscInt value,
81368c645fSJames Wright                                 CeedInt height, CeedInt Q_sur,
82368c645fSJames Wright                                 CeedInt q_data_size_sur, CeedInt jac_data_size_sur,
83368c645fSJames Wright                                 CeedQFunction qf_apply_bc, CeedQFunction qf_apply_bc_jacobian,
84368c645fSJames Wright                                 CeedOperator *op_apply, CeedOperator *op_apply_ijacobian) {
85368c645fSJames Wright   CeedVector          q_data_sur, jac_data_sur;
86368c645fSJames Wright   CeedOperator        op_setup_sur, op_apply_bc,
87368c645fSJames Wright                       op_apply_bc_jacobian = NULL;
88368c645fSJames Wright   CeedElemRestriction elem_restr_x_sur, elem_restr_q_sur, elem_restr_qd_i_sur,
89368c645fSJames Wright                       elem_restr_jd_i_sur;
90368c645fSJames Wright   CeedInt num_qpts_sur;
91368c645fSJames Wright   PetscFunctionBeginUser;
92368c645fSJames Wright 
93368c645fSJames Wright   // --- Get number of quadrature points for the boundaries
94368c645fSJames Wright   CeedBasisGetNumQuadraturePoints(ceed_data->basis_q_sur, &num_qpts_sur);
95368c645fSJames Wright 
96368c645fSJames Wright 
97368c645fSJames Wright   // ---- CEED Restriction
98368c645fSJames Wright   PetscCall(GetRestrictionForDomain(ceed, dm, height, domain_label, value, Q_sur,
99368c645fSJames Wright                                     q_data_size_sur, &elem_restr_q_sur, &elem_restr_x_sur, &elem_restr_qd_i_sur));
100368c645fSJames Wright   if (jac_data_size_sur > 0) {
101368c645fSJames Wright     // State-dependent data will be passed from residual to Jacobian. This will be collocated.
102368c645fSJames Wright     PetscCall(GetRestrictionForDomain(ceed, dm, height, domain_label, value, Q_sur,
103368c645fSJames Wright                                       jac_data_size_sur, NULL, NULL, &elem_restr_jd_i_sur));
104368c645fSJames Wright     CeedElemRestrictionCreateVector(elem_restr_jd_i_sur, &jac_data_sur, NULL);
105368c645fSJames Wright   } else {
106368c645fSJames Wright     elem_restr_jd_i_sur = NULL;
107368c645fSJames Wright     jac_data_sur = NULL;
108368c645fSJames Wright   }
109368c645fSJames Wright 
110368c645fSJames Wright   // ---- CEED Vector
111368c645fSJames Wright   PetscInt loc_num_elem_sur;
112368c645fSJames Wright   CeedElemRestrictionGetNumElements(elem_restr_q_sur, &loc_num_elem_sur);
113368c645fSJames Wright   CeedVectorCreate(ceed, q_data_size_sur*loc_num_elem_sur*num_qpts_sur,
114368c645fSJames Wright                    &q_data_sur);
115368c645fSJames Wright 
116368c645fSJames Wright   // ---- CEED Operator
117368c645fSJames Wright   // ----- CEED Operator for Setup (geometric factors)
118368c645fSJames Wright   CeedOperatorCreate(ceed, ceed_data->qf_setup_sur, NULL, NULL, &op_setup_sur);
119368c645fSJames Wright   CeedOperatorSetField(op_setup_sur, "dx", elem_restr_x_sur,
120368c645fSJames Wright                        ceed_data->basis_x_sur, CEED_VECTOR_ACTIVE);
121368c645fSJames Wright   CeedOperatorSetField(op_setup_sur, "weight", CEED_ELEMRESTRICTION_NONE,
122368c645fSJames Wright                        ceed_data->basis_x_sur, CEED_VECTOR_NONE);
123368c645fSJames Wright   CeedOperatorSetField(op_setup_sur, "surface qdata", elem_restr_qd_i_sur,
124368c645fSJames Wright                        CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE);
125368c645fSJames Wright 
126368c645fSJames Wright   // ----- CEED Operator for Physics
127368c645fSJames Wright   CeedOperatorCreate(ceed, qf_apply_bc, NULL, NULL, &op_apply_bc);
128368c645fSJames Wright   CeedOperatorSetField(op_apply_bc, "q", elem_restr_q_sur, ceed_data->basis_q_sur,
129368c645fSJames Wright                        CEED_VECTOR_ACTIVE);
130368c645fSJames Wright   CeedOperatorSetField(op_apply_bc, "Grad_q", elem_restr_q_sur,
131368c645fSJames Wright                        ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
132368c645fSJames Wright   CeedOperatorSetField(op_apply_bc, "surface qdata", elem_restr_qd_i_sur,
133368c645fSJames Wright                        CEED_BASIS_COLLOCATED, q_data_sur);
134368c645fSJames Wright   CeedOperatorSetField(op_apply_bc, "x", elem_restr_x_sur, ceed_data->basis_x_sur,
135368c645fSJames Wright                        ceed_data->x_coord);
136368c645fSJames Wright   CeedOperatorSetField(op_apply_bc, "v", elem_restr_q_sur, ceed_data->basis_q_sur,
137368c645fSJames Wright                        CEED_VECTOR_ACTIVE);
138368c645fSJames Wright   if (elem_restr_jd_i_sur)
139368c645fSJames Wright     CeedOperatorSetField(op_apply_bc, "surface jacobian data",
140368c645fSJames Wright                          elem_restr_jd_i_sur,
141368c645fSJames Wright                          CEED_BASIS_COLLOCATED, jac_data_sur);
142368c645fSJames Wright 
143368c645fSJames Wright   if (qf_apply_bc_jacobian) {
144368c645fSJames Wright     CeedOperatorCreate(ceed, qf_apply_bc_jacobian, NULL, NULL,
145368c645fSJames Wright                        &op_apply_bc_jacobian);
146368c645fSJames Wright     CeedOperatorSetField(op_apply_bc_jacobian, "dq", elem_restr_q_sur,
147368c645fSJames Wright                          ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
148368c645fSJames Wright     CeedOperatorSetField(op_apply_bc_jacobian, "Grad_dq", elem_restr_q_sur,
149368c645fSJames Wright                          ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
150368c645fSJames Wright     CeedOperatorSetField(op_apply_bc_jacobian, "surface qdata", elem_restr_qd_i_sur,
151368c645fSJames Wright                          CEED_BASIS_COLLOCATED, q_data_sur);
152368c645fSJames Wright     CeedOperatorSetField(op_apply_bc_jacobian, "x", elem_restr_x_sur,
153368c645fSJames Wright                          ceed_data->basis_x_sur, ceed_data->x_coord);
154368c645fSJames Wright     CeedOperatorSetField(op_apply_bc_jacobian, "surface jacobian data",
155368c645fSJames Wright                          elem_restr_jd_i_sur, CEED_BASIS_COLLOCATED, jac_data_sur);
156368c645fSJames Wright     CeedOperatorSetField(op_apply_bc_jacobian, "v", elem_restr_q_sur,
157368c645fSJames Wright                          ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
158368c645fSJames Wright   }
159368c645fSJames Wright 
160368c645fSJames Wright   // ----- Apply CEED operator for Setup
161368c645fSJames Wright   CeedOperatorApply(op_setup_sur, ceed_data->x_coord, q_data_sur,
162368c645fSJames Wright                     CEED_REQUEST_IMMEDIATE);
163368c645fSJames Wright 
164368c645fSJames Wright   // ----- Apply Sub-Operator for Physics
165368c645fSJames Wright   CeedCompositeOperatorAddSub(*op_apply, op_apply_bc);
166368c645fSJames Wright   if (op_apply_bc_jacobian)
167368c645fSJames Wright     CeedCompositeOperatorAddSub(*op_apply_ijacobian, op_apply_bc_jacobian);
168368c645fSJames Wright 
169368c645fSJames Wright   // ----- Cleanup
170368c645fSJames Wright   CeedVectorDestroy(&q_data_sur);
171368c645fSJames Wright   CeedVectorDestroy(&jac_data_sur);
172368c645fSJames Wright   CeedElemRestrictionDestroy(&elem_restr_q_sur);
173368c645fSJames Wright   CeedElemRestrictionDestroy(&elem_restr_x_sur);
174368c645fSJames Wright   CeedElemRestrictionDestroy(&elem_restr_qd_i_sur);
175368c645fSJames Wright   CeedElemRestrictionDestroy(&elem_restr_jd_i_sur);
176368c645fSJames Wright   CeedOperatorDestroy(&op_setup_sur);
177368c645fSJames Wright   CeedOperatorDestroy(&op_apply_bc);
178368c645fSJames Wright   CeedOperatorDestroy(&op_apply_bc_jacobian);
179368c645fSJames Wright 
180368c645fSJames Wright   PetscFunctionReturn(0);
181368c645fSJames Wright }
182368c645fSJames Wright 
183a515125bSLeila Ghaffari // Utility function to create CEED Composite Operator for the entire domain
184a515125bSLeila Ghaffari PetscErrorCode CreateOperatorForDomain(Ceed ceed, DM dm, SimpleBC bc,
185a515125bSLeila Ghaffari                                        CeedData ceed_data, Physics phys,
186f0b65372SJed Brown                                        CeedOperator op_apply_vol,
187f0b65372SJed Brown                                        CeedOperator op_apply_ijacobian_vol,
188f0b65372SJed Brown                                        CeedInt height,
189f0b65372SJed Brown                                        CeedInt P_sur, CeedInt Q_sur,
190f0b65372SJed Brown                                        CeedInt q_data_size_sur, CeedInt jac_data_size_sur,
191f0b65372SJed Brown                                        CeedOperator *op_apply, CeedOperator *op_apply_ijacobian) {
192a515125bSLeila Ghaffari   DMLabel        domain_label;
193a515125bSLeila Ghaffari   PetscErrorCode ierr;
194a515125bSLeila Ghaffari   PetscFunctionBeginUser;
195a515125bSLeila Ghaffari 
196a515125bSLeila Ghaffari   // Create Composite Operaters
197a515125bSLeila Ghaffari   CeedCompositeOperatorCreate(ceed, op_apply);
198f0b65372SJed Brown   if (op_apply_ijacobian)
199f0b65372SJed Brown     CeedCompositeOperatorCreate(ceed, op_apply_ijacobian);
200a515125bSLeila Ghaffari 
201a515125bSLeila Ghaffari   // --Apply Sub-Operator for the volume
202a515125bSLeila Ghaffari   CeedCompositeOperatorAddSub(*op_apply, op_apply_vol);
203f0b65372SJed Brown   if (op_apply_ijacobian)
204f0b65372SJed Brown     CeedCompositeOperatorAddSub(*op_apply_ijacobian, op_apply_ijacobian_vol);
205a515125bSLeila Ghaffari 
206a515125bSLeila Ghaffari   // -- Create Sub-Operator for in/outflow BCs
207bb8a0c61SJames Wright   if (phys->has_neumann || 1) {
208a515125bSLeila Ghaffari     // --- Setup
209a515125bSLeila Ghaffari     ierr = DMGetLabel(dm, "Face Sets", &domain_label); CHKERRQ(ierr);
210a515125bSLeila Ghaffari 
211002797a3SLeila Ghaffari     // --- Create Sub-Operator for inflow boundaries
212002797a3SLeila Ghaffari     for (CeedInt i=0; i < bc->num_inflow; i++) {
213368c645fSJames Wright       PetscCall(AddBCSubOperator(ceed, dm, ceed_data, domain_label, bc->inflows[i],
214368c645fSJames Wright                                  height, Q_sur, q_data_size_sur, jac_data_size_sur,
215368c645fSJames Wright                                  ceed_data->qf_apply_inflow, ceed_data->qf_apply_inflow_jacobian,
216368c645fSJames Wright                                  op_apply, op_apply_ijacobian));
217a515125bSLeila Ghaffari     }
218a515125bSLeila Ghaffari 
219002797a3SLeila Ghaffari     // --- Create Sub-Operator for outflow boundaries
220002797a3SLeila Ghaffari     for (CeedInt i=0; i < bc->num_outflow; i++) {
221368c645fSJames Wright       PetscCall(AddBCSubOperator(ceed, dm, ceed_data, domain_label, bc->outflows[i],
222368c645fSJames Wright                                  height, Q_sur, q_data_size_sur, jac_data_size_sur,
223368c645fSJames Wright                                  ceed_data->qf_apply_outflow, ceed_data->qf_apply_outflow_jacobian,
224368c645fSJames Wright                                  op_apply, op_apply_ijacobian));
225002797a3SLeila Ghaffari     }
226002797a3SLeila Ghaffari   }
22792ada588SJames Wright 
22892ada588SJames Wright   // ----- Get Context Labels for Operator
22992ada588SJames Wright   CeedOperatorContextGetFieldLabel(*op_apply, "solution time",
23092ada588SJames Wright                                    &phys->solution_time_label);
231bb8a0c61SJames Wright   CeedOperatorContextGetFieldLabel(*op_apply, "timestep size",
232bb8a0c61SJames Wright                                    &phys->timestep_size_label);
23392ada588SJames Wright 
234a515125bSLeila Ghaffari   PetscFunctionReturn(0);
235a515125bSLeila Ghaffari }
236a515125bSLeila Ghaffari 
237*25988f00SJames Wright PetscErrorCode SetupBCQFunctions(Ceed ceed, PetscInt dim_sur,
238*25988f00SJames Wright                                  PetscInt num_comp_x, PetscInt num_comp_q,
239*25988f00SJames Wright                                  PetscInt q_data_size_sur, PetscInt jac_data_size_sur,
240*25988f00SJames Wright                                  ProblemQFunctionSpec apply_bc, ProblemQFunctionSpec apply_bc_jacobian,
241*25988f00SJames Wright                                  CeedQFunction *qf_apply_bc, CeedQFunction *qf_apply_bc_jacobian) {
242*25988f00SJames Wright   PetscFunctionBeginUser;
243*25988f00SJames Wright 
244*25988f00SJames Wright   if (apply_bc.qfunction) {
245*25988f00SJames Wright     // *INDENT-OFF*
246*25988f00SJames Wright     CeedQFunctionCreateInterior(ceed, 1, apply_bc.qfunction, apply_bc.qfunction_loc, qf_apply_bc);
247*25988f00SJames Wright     CeedQFunctionSetContext(*qf_apply_bc, apply_bc.qfunction_context);
248*25988f00SJames Wright     CeedQFunctionContextDestroy(&apply_bc.qfunction_context);
249*25988f00SJames Wright     CeedQFunctionAddInput(*qf_apply_bc, "q", num_comp_q, CEED_EVAL_INTERP);
250*25988f00SJames Wright     CeedQFunctionAddInput(*qf_apply_bc, "Grad_q", num_comp_q*dim_sur, CEED_EVAL_GRAD);
251*25988f00SJames Wright     CeedQFunctionAddInput(*qf_apply_bc, "surface qdata", q_data_size_sur, CEED_EVAL_NONE);
252*25988f00SJames Wright     CeedQFunctionAddInput(*qf_apply_bc, "x", num_comp_x, CEED_EVAL_INTERP);
253*25988f00SJames Wright     CeedQFunctionAddOutput(*qf_apply_bc, "v", num_comp_q, CEED_EVAL_INTERP);
254*25988f00SJames Wright     // *INDENT-ON*
255*25988f00SJames Wright     if (jac_data_size_sur)
256*25988f00SJames Wright       CeedQFunctionAddOutput(*qf_apply_bc, "surface jacobian data", jac_data_size_sur,
257*25988f00SJames Wright                              CEED_EVAL_NONE);
258*25988f00SJames Wright   }
259*25988f00SJames Wright   if (apply_bc_jacobian.qfunction) {
260*25988f00SJames Wright     // *INDENT-OFF*
261*25988f00SJames Wright     CeedQFunctionCreateInterior(ceed, 1, apply_bc_jacobian.qfunction,
262*25988f00SJames Wright                                 apply_bc_jacobian.qfunction_loc, qf_apply_bc_jacobian);
263*25988f00SJames Wright     CeedQFunctionSetContext(*qf_apply_bc_jacobian, apply_bc_jacobian.qfunction_context);
264*25988f00SJames Wright     CeedQFunctionContextDestroy(&apply_bc_jacobian.qfunction_context);
265*25988f00SJames Wright     CeedQFunctionAddInput(*qf_apply_bc_jacobian, "dq", num_comp_q, CEED_EVAL_INTERP);
266*25988f00SJames Wright     CeedQFunctionAddInput(*qf_apply_bc_jacobian, "Grad_dq", num_comp_q*dim_sur, CEED_EVAL_GRAD);
267*25988f00SJames Wright     CeedQFunctionAddInput(*qf_apply_bc_jacobian, "surface qdata", q_data_size_sur, CEED_EVAL_NONE);
268*25988f00SJames Wright     CeedQFunctionAddInput(*qf_apply_bc_jacobian, "x", num_comp_x, CEED_EVAL_INTERP);
269*25988f00SJames Wright     CeedQFunctionAddInput(*qf_apply_bc_jacobian, "surface jacobian data",
270*25988f00SJames Wright                           jac_data_size_sur, CEED_EVAL_NONE);
271*25988f00SJames Wright     CeedQFunctionAddOutput(*qf_apply_bc_jacobian, "v", num_comp_q, CEED_EVAL_INTERP);
272*25988f00SJames Wright     // *INDENT-ON*
273*25988f00SJames Wright   }
274*25988f00SJames Wright   PetscFunctionReturn(0);
275*25988f00SJames Wright }
276*25988f00SJames Wright 
277a515125bSLeila Ghaffari PetscErrorCode SetupLibceed(Ceed ceed, CeedData ceed_data, DM dm, User user,
278c848b8b7SJed Brown                             AppCtx app_ctx, ProblemData *problem, SimpleBC bc) {
279a515125bSLeila Ghaffari   PetscErrorCode ierr;
280a515125bSLeila Ghaffari   PetscFunctionBeginUser;
281a515125bSLeila Ghaffari 
282a515125bSLeila Ghaffari   // *****************************************************************************
283a515125bSLeila Ghaffari   // Set up CEED objects for the interior domain (volume)
284a515125bSLeila Ghaffari   // *****************************************************************************
285a515125bSLeila Ghaffari   const PetscInt num_comp_q      = 5;
286a515125bSLeila Ghaffari   const CeedInt  dim             = problem->dim,
287a515125bSLeila Ghaffari                  num_comp_x      = problem->dim,
288a515125bSLeila Ghaffari                  q_data_size_vol = problem->q_data_size_vol,
289f0b65372SJed Brown                  jac_data_size_vol = num_comp_q + 6 + 3,
290a515125bSLeila Ghaffari                  P               = app_ctx->degree + 1,
291a515125bSLeila Ghaffari                  Q               = P + app_ctx->q_extra;
292752f40e3SJed Brown   CeedElemRestriction elem_restr_jd_i;
293752f40e3SJed Brown   CeedVector jac_data;
294a515125bSLeila Ghaffari 
295a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
296a515125bSLeila Ghaffari   // CEED Bases
297a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
298a515125bSLeila Ghaffari   CeedBasisCreateTensorH1Lagrange(ceed, dim, num_comp_q, P, Q, CEED_GAUSS,
299a515125bSLeila Ghaffari                                   &ceed_data->basis_q);
300a515125bSLeila Ghaffari   CeedBasisCreateTensorH1Lagrange(ceed, dim, num_comp_x, 2, Q, CEED_GAUSS,
301a515125bSLeila Ghaffari                                   &ceed_data->basis_x);
302a515125bSLeila Ghaffari   CeedBasisCreateTensorH1Lagrange(ceed, dim, num_comp_x, 2, P,
303a515125bSLeila Ghaffari                                   CEED_GAUSS_LOBATTO, &ceed_data->basis_xc);
304a515125bSLeila Ghaffari 
305a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
306a515125bSLeila Ghaffari   // CEED Restrictions
307a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
308a515125bSLeila Ghaffari   // -- Create restriction
3096b1ccf21SJeremy L Thompson   ierr = GetRestrictionForDomain(ceed, dm, 0, 0, 0, Q, q_data_size_vol,
3106b1ccf21SJeremy L Thompson                                  &ceed_data->elem_restr_q, &ceed_data->elem_restr_x,
311a515125bSLeila Ghaffari                                  &ceed_data->elem_restr_qd_i); CHKERRQ(ierr);
312752f40e3SJed Brown 
313752f40e3SJed Brown   ierr = GetRestrictionForDomain(ceed, dm, 0, 0, 0, Q, jac_data_size_vol,
314752f40e3SJed Brown                                  NULL, NULL,
315752f40e3SJed Brown                                  &elem_restr_jd_i); CHKERRQ(ierr);
316a515125bSLeila Ghaffari // -- Create E vectors
317a515125bSLeila Ghaffari   CeedElemRestrictionCreateVector(ceed_data->elem_restr_q, &user->q_ceed, NULL);
318a515125bSLeila Ghaffari   CeedElemRestrictionCreateVector(ceed_data->elem_restr_q, &user->q_dot_ceed,
319a515125bSLeila Ghaffari                                   NULL);
320a515125bSLeila Ghaffari   CeedElemRestrictionCreateVector(ceed_data->elem_restr_q, &user->g_ceed, NULL);
321a515125bSLeila Ghaffari 
322a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
323a515125bSLeila Ghaffari   // CEED QFunctions
324a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
325a515125bSLeila Ghaffari   // -- Create QFunction for quadrature data
3269785fe93SJed Brown   CeedQFunctionCreateInterior(ceed, 1, problem->setup_vol.qfunction,
3279785fe93SJed Brown                               problem->setup_vol.qfunction_loc,
328a515125bSLeila Ghaffari                               &ceed_data->qf_setup_vol);
32915a3537eSJed Brown   if (problem->setup_vol.qfunction_context) {
33015a3537eSJed Brown     CeedQFunctionSetContext(ceed_data->qf_setup_vol,
33115a3537eSJed Brown                             problem->setup_vol.qfunction_context);
33215a3537eSJed Brown     CeedQFunctionContextDestroy(&problem->setup_vol.qfunction_context);
33315a3537eSJed Brown   }
334a515125bSLeila Ghaffari   CeedQFunctionAddInput(ceed_data->qf_setup_vol, "dx", num_comp_x*dim,
335a515125bSLeila Ghaffari                         CEED_EVAL_GRAD);
336a515125bSLeila Ghaffari   CeedQFunctionAddInput(ceed_data->qf_setup_vol, "weight", 1, CEED_EVAL_WEIGHT);
3373b1e209bSJeremy L Thompson   CeedQFunctionAddOutput(ceed_data->qf_setup_vol, "qdata", q_data_size_vol,
338a515125bSLeila Ghaffari                          CEED_EVAL_NONE);
339a515125bSLeila Ghaffari 
340a515125bSLeila Ghaffari   // -- Create QFunction for ICs
3419785fe93SJed Brown   CeedQFunctionCreateInterior(ceed, 1, problem->ics.qfunction,
3429785fe93SJed Brown                               problem->ics.qfunction_loc,
343a515125bSLeila Ghaffari                               &ceed_data->qf_ics);
34415a3537eSJed Brown   CeedQFunctionSetContext(ceed_data->qf_ics, problem->ics.qfunction_context);
34515a3537eSJed Brown   CeedQFunctionContextDestroy(&problem->ics.qfunction_context);
346a515125bSLeila Ghaffari   CeedQFunctionAddInput(ceed_data->qf_ics, "x", num_comp_x, CEED_EVAL_INTERP);
347a515125bSLeila Ghaffari   CeedQFunctionAddOutput(ceed_data->qf_ics, "q0", num_comp_q, CEED_EVAL_NONE);
348a515125bSLeila Ghaffari 
349a515125bSLeila Ghaffari   // -- Create QFunction for RHS
3509785fe93SJed Brown   if (problem->apply_vol_rhs.qfunction) {
3519785fe93SJed Brown     CeedQFunctionCreateInterior(ceed, 1, problem->apply_vol_rhs.qfunction,
3529785fe93SJed Brown                                 problem->apply_vol_rhs.qfunction_loc, &ceed_data->qf_rhs_vol);
35315a3537eSJed Brown     CeedQFunctionSetContext(ceed_data->qf_rhs_vol,
35415a3537eSJed Brown                             problem->apply_vol_rhs.qfunction_context);
35515a3537eSJed Brown     CeedQFunctionContextDestroy(&problem->apply_vol_rhs.qfunction_context);
356a515125bSLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_rhs_vol, "q", num_comp_q, CEED_EVAL_INTERP);
357752f40e3SJed Brown     CeedQFunctionAddInput(ceed_data->qf_rhs_vol, "Grad_q", num_comp_q*dim,
358a515125bSLeila Ghaffari                           CEED_EVAL_GRAD);
3593b1e209bSJeremy L Thompson     CeedQFunctionAddInput(ceed_data->qf_rhs_vol, "qdata", q_data_size_vol,
360a515125bSLeila Ghaffari                           CEED_EVAL_NONE);
361a515125bSLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_rhs_vol, "x", num_comp_x, CEED_EVAL_INTERP);
362a515125bSLeila Ghaffari     CeedQFunctionAddOutput(ceed_data->qf_rhs_vol, "v", num_comp_q,
363a515125bSLeila Ghaffari                            CEED_EVAL_INTERP);
364752f40e3SJed Brown     CeedQFunctionAddOutput(ceed_data->qf_rhs_vol, "Grad_v", num_comp_q*dim,
365a515125bSLeila Ghaffari                            CEED_EVAL_GRAD);
366a515125bSLeila Ghaffari   }
367a515125bSLeila Ghaffari 
368a515125bSLeila Ghaffari   // -- Create QFunction for IFunction
3699785fe93SJed Brown   if (problem->apply_vol_ifunction.qfunction) {
3709785fe93SJed Brown     CeedQFunctionCreateInterior(ceed, 1, problem->apply_vol_ifunction.qfunction,
3719785fe93SJed Brown                                 problem->apply_vol_ifunction.qfunction_loc, &ceed_data->qf_ifunction_vol);
37215a3537eSJed Brown     CeedQFunctionSetContext(ceed_data->qf_ifunction_vol,
37315a3537eSJed Brown                             problem->apply_vol_ifunction.qfunction_context);
37415a3537eSJed Brown     CeedQFunctionContextDestroy(&problem->apply_vol_ifunction.qfunction_context);
375a515125bSLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_ifunction_vol, "q", num_comp_q,
376a515125bSLeila Ghaffari                           CEED_EVAL_INTERP);
377752f40e3SJed Brown     CeedQFunctionAddInput(ceed_data->qf_ifunction_vol, "Grad_q", num_comp_q*dim,
378a515125bSLeila Ghaffari                           CEED_EVAL_GRAD);
3793b1e209bSJeremy L Thompson     CeedQFunctionAddInput(ceed_data->qf_ifunction_vol, "q dot", num_comp_q,
380a515125bSLeila Ghaffari                           CEED_EVAL_INTERP);
3813b1e209bSJeremy L Thompson     CeedQFunctionAddInput(ceed_data->qf_ifunction_vol, "qdata", q_data_size_vol,
382a515125bSLeila Ghaffari                           CEED_EVAL_NONE);
383a515125bSLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_ifunction_vol, "x", num_comp_x,
384a515125bSLeila Ghaffari                           CEED_EVAL_INTERP);
385a515125bSLeila Ghaffari     CeedQFunctionAddOutput(ceed_data->qf_ifunction_vol, "v", num_comp_q,
386a515125bSLeila Ghaffari                            CEED_EVAL_INTERP);
387752f40e3SJed Brown     CeedQFunctionAddOutput(ceed_data->qf_ifunction_vol, "Grad_v", num_comp_q*dim,
388a515125bSLeila Ghaffari                            CEED_EVAL_GRAD);
389752f40e3SJed Brown     CeedQFunctionAddOutput(ceed_data->qf_ifunction_vol, "jac_data",
390752f40e3SJed Brown                            jac_data_size_vol, CEED_EVAL_NONE);
391a515125bSLeila Ghaffari   }
392a515125bSLeila Ghaffari 
393f0b65372SJed Brown   CeedQFunction qf_ijacobian_vol = NULL;
394f0b65372SJed Brown   if (problem->apply_vol_ijacobian.qfunction) {
395f0b65372SJed Brown     CeedQFunctionCreateInterior(ceed, 1, problem->apply_vol_ijacobian.qfunction,
396f0b65372SJed Brown                                 problem->apply_vol_ijacobian.qfunction_loc, &qf_ijacobian_vol);
397f0b65372SJed Brown     CeedQFunctionSetContext(qf_ijacobian_vol,
398f0b65372SJed Brown                             problem->apply_vol_ijacobian.qfunction_context);
399f0b65372SJed Brown     CeedQFunctionContextDestroy(&problem->apply_vol_ijacobian.qfunction_context);
400f0b65372SJed Brown     CeedQFunctionAddInput(qf_ijacobian_vol, "dq", num_comp_q,
401f0b65372SJed Brown                           CEED_EVAL_INTERP);
402f0b65372SJed Brown     CeedQFunctionAddInput(qf_ijacobian_vol, "Grad_dq", num_comp_q*dim,
403f0b65372SJed Brown                           CEED_EVAL_GRAD);
404f0b65372SJed Brown     CeedQFunctionAddInput(qf_ijacobian_vol, "qdata", q_data_size_vol,
405f0b65372SJed Brown                           CEED_EVAL_NONE);
406f0b65372SJed Brown     CeedQFunctionAddInput(qf_ijacobian_vol, "x", num_comp_x,
407f0b65372SJed Brown                           CEED_EVAL_INTERP);
408f0b65372SJed Brown     CeedQFunctionAddInput(qf_ijacobian_vol, "jac_data",
409f0b65372SJed Brown                           jac_data_size_vol, CEED_EVAL_NONE);
410f0b65372SJed Brown     CeedQFunctionAddOutput(qf_ijacobian_vol, "v", num_comp_q,
411f0b65372SJed Brown                            CEED_EVAL_INTERP);
412f0b65372SJed Brown     CeedQFunctionAddOutput(qf_ijacobian_vol, "Grad_v", num_comp_q*dim,
413f0b65372SJed Brown                            CEED_EVAL_GRAD);
414f0b65372SJed Brown   }
415f0b65372SJed Brown 
416a515125bSLeila Ghaffari   // ---------------------------------------------------------------------------
417a515125bSLeila Ghaffari   // Element coordinates
418a515125bSLeila Ghaffari   // ---------------------------------------------------------------------------
419a515125bSLeila Ghaffari   // -- Create CEED vector
420a515125bSLeila Ghaffari   CeedElemRestrictionCreateVector(ceed_data->elem_restr_x, &ceed_data->x_coord,
421a515125bSLeila Ghaffari                                   NULL);
422a515125bSLeila Ghaffari 
423a515125bSLeila Ghaffari   // -- Copy PETSc vector in CEED vector
424a515125bSLeila Ghaffari   Vec               X_loc;
425a515125bSLeila Ghaffari   const PetscScalar *X_loc_array;
426cac8aa24SJed Brown   {
427cac8aa24SJed Brown     DM cdm;
428cac8aa24SJed Brown     ierr = DMGetCellCoordinateDM(dm, &cdm); CHKERRQ(ierr);
429cac8aa24SJed Brown     if (cdm) {ierr = DMGetCellCoordinatesLocal(dm, &X_loc); CHKERRQ(ierr);}
430cac8aa24SJed Brown     else {ierr = DMGetCoordinatesLocal(dm, &X_loc); CHKERRQ(ierr);}
431cac8aa24SJed Brown   }
43205a512bdSLeila Ghaffari   ierr = VecScale(X_loc, problem->dm_scale); CHKERRQ(ierr);
433a515125bSLeila Ghaffari   ierr = VecGetArrayRead(X_loc, &X_loc_array); CHKERRQ(ierr);
434a515125bSLeila Ghaffari   CeedVectorSetArray(ceed_data->x_coord, CEED_MEM_HOST, CEED_COPY_VALUES,
435a515125bSLeila Ghaffari                      (PetscScalar *)X_loc_array);
436a515125bSLeila Ghaffari   ierr = VecRestoreArrayRead(X_loc, &X_loc_array); CHKERRQ(ierr);
437a515125bSLeila Ghaffari 
438a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
439a515125bSLeila Ghaffari   // CEED vectors
440a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
441a515125bSLeila Ghaffari   // -- Create CEED vector for geometric data
442a515125bSLeila Ghaffari   CeedInt  num_qpts_vol;
443a515125bSLeila Ghaffari   PetscInt loc_num_elem_vol;
444a515125bSLeila Ghaffari   CeedBasisGetNumQuadraturePoints(ceed_data->basis_q, &num_qpts_vol);
445a515125bSLeila Ghaffari   CeedElemRestrictionGetNumElements(ceed_data->elem_restr_q, &loc_num_elem_vol);
446a515125bSLeila Ghaffari   CeedVectorCreate(ceed, q_data_size_vol*loc_num_elem_vol*num_qpts_vol,
447a515125bSLeila Ghaffari                    &ceed_data->q_data);
448a515125bSLeila Ghaffari 
449752f40e3SJed Brown   CeedElemRestrictionCreateVector(elem_restr_jd_i, &jac_data, NULL);
450a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
451a515125bSLeila Ghaffari   // CEED Operators
452a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
453a515125bSLeila Ghaffari   // -- Create CEED operator for quadrature data
454a515125bSLeila Ghaffari   CeedOperatorCreate(ceed, ceed_data->qf_setup_vol, NULL, NULL,
455a515125bSLeila Ghaffari                      &ceed_data->op_setup_vol);
456a515125bSLeila Ghaffari   CeedOperatorSetField(ceed_data->op_setup_vol, "dx", ceed_data->elem_restr_x,
457a515125bSLeila Ghaffari                        ceed_data->basis_x, CEED_VECTOR_ACTIVE);
458a515125bSLeila Ghaffari   CeedOperatorSetField(ceed_data->op_setup_vol, "weight",
459139613f2SLeila Ghaffari                        CEED_ELEMRESTRICTION_NONE, ceed_data->basis_x, CEED_VECTOR_NONE);
4603b1e209bSJeremy L Thompson   CeedOperatorSetField(ceed_data->op_setup_vol, "qdata",
461139613f2SLeila Ghaffari                        ceed_data->elem_restr_qd_i, CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE);
462a515125bSLeila Ghaffari 
463a515125bSLeila Ghaffari   // -- Create CEED operator for ICs
464a515125bSLeila Ghaffari   CeedOperatorCreate(ceed, ceed_data->qf_ics, NULL, NULL, &ceed_data->op_ics);
465a515125bSLeila Ghaffari   CeedOperatorSetField(ceed_data->op_ics, "x", ceed_data->elem_restr_x,
466a515125bSLeila Ghaffari                        ceed_data->basis_xc, CEED_VECTOR_ACTIVE);
467a515125bSLeila Ghaffari   CeedOperatorSetField(ceed_data->op_ics, "q0", ceed_data->elem_restr_q,
468a515125bSLeila Ghaffari                        CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE);
46915a3537eSJed Brown   CeedOperatorContextGetFieldLabel(ceed_data->op_ics, "evaluation time",
47015a3537eSJed Brown                                    &user->phys->ics_time_label);
471a515125bSLeila Ghaffari 
472a515125bSLeila Ghaffari   // Create CEED operator for RHS
473a515125bSLeila Ghaffari   if (ceed_data->qf_rhs_vol) {
474a515125bSLeila Ghaffari     CeedOperator op;
475a515125bSLeila Ghaffari     CeedOperatorCreate(ceed, ceed_data->qf_rhs_vol, NULL, NULL, &op);
476a515125bSLeila Ghaffari     CeedOperatorSetField(op, "q", ceed_data->elem_restr_q, ceed_data->basis_q,
477a515125bSLeila Ghaffari                          CEED_VECTOR_ACTIVE);
478752f40e3SJed Brown     CeedOperatorSetField(op, "Grad_q", ceed_data->elem_restr_q, ceed_data->basis_q,
479a515125bSLeila Ghaffari                          CEED_VECTOR_ACTIVE);
4803b1e209bSJeremy L Thompson     CeedOperatorSetField(op, "qdata", ceed_data->elem_restr_qd_i,
481139613f2SLeila Ghaffari                          CEED_BASIS_COLLOCATED, ceed_data->q_data);
482a515125bSLeila Ghaffari     CeedOperatorSetField(op, "x", ceed_data->elem_restr_x, ceed_data->basis_x,
483a515125bSLeila Ghaffari                          ceed_data->x_coord);
484a515125bSLeila Ghaffari     CeedOperatorSetField(op, "v", ceed_data->elem_restr_q, ceed_data->basis_q,
485a515125bSLeila Ghaffari                          CEED_VECTOR_ACTIVE);
486752f40e3SJed Brown     CeedOperatorSetField(op, "Grad_v", ceed_data->elem_restr_q, ceed_data->basis_q,
487a515125bSLeila Ghaffari                          CEED_VECTOR_ACTIVE);
488a515125bSLeila Ghaffari     user->op_rhs_vol = op;
489a515125bSLeila Ghaffari   }
490a515125bSLeila Ghaffari 
491a515125bSLeila Ghaffari   // -- CEED operator for IFunction
492a515125bSLeila Ghaffari   if (ceed_data->qf_ifunction_vol) {
493a515125bSLeila Ghaffari     CeedOperator op;
494a515125bSLeila Ghaffari     CeedOperatorCreate(ceed, ceed_data->qf_ifunction_vol, NULL, NULL, &op);
495a515125bSLeila Ghaffari     CeedOperatorSetField(op, "q", ceed_data->elem_restr_q, ceed_data->basis_q,
496a515125bSLeila Ghaffari                          CEED_VECTOR_ACTIVE);
497752f40e3SJed Brown     CeedOperatorSetField(op, "Grad_q", ceed_data->elem_restr_q, ceed_data->basis_q,
498a515125bSLeila Ghaffari                          CEED_VECTOR_ACTIVE);
4993b1e209bSJeremy L Thompson     CeedOperatorSetField(op, "q dot", ceed_data->elem_restr_q, ceed_data->basis_q,
500a515125bSLeila Ghaffari                          user->q_dot_ceed);
5013b1e209bSJeremy L Thompson     CeedOperatorSetField(op, "qdata", ceed_data->elem_restr_qd_i,
502139613f2SLeila Ghaffari                          CEED_BASIS_COLLOCATED, ceed_data->q_data);
503a515125bSLeila Ghaffari     CeedOperatorSetField(op, "x", ceed_data->elem_restr_x, ceed_data->basis_x,
504a515125bSLeila Ghaffari                          ceed_data->x_coord);
505a515125bSLeila Ghaffari     CeedOperatorSetField(op, "v", ceed_data->elem_restr_q, ceed_data->basis_q,
506a515125bSLeila Ghaffari                          CEED_VECTOR_ACTIVE);
507752f40e3SJed Brown     CeedOperatorSetField(op, "Grad_v", ceed_data->elem_restr_q, ceed_data->basis_q,
508a515125bSLeila Ghaffari                          CEED_VECTOR_ACTIVE);
509752f40e3SJed Brown     CeedOperatorSetField(op, "jac_data", elem_restr_jd_i,
510752f40e3SJed Brown                          CEED_BASIS_COLLOCATED, jac_data);
511752f40e3SJed Brown 
512a515125bSLeila Ghaffari     user->op_ifunction_vol = op;
513a515125bSLeila Ghaffari   }
514a515125bSLeila Ghaffari 
515f0b65372SJed Brown   CeedOperator op_ijacobian_vol = NULL;
516f0b65372SJed Brown   if (qf_ijacobian_vol) {
517f0b65372SJed Brown     CeedOperator op;
518f0b65372SJed Brown     CeedOperatorCreate(ceed, qf_ijacobian_vol, NULL, NULL, &op);
519f0b65372SJed Brown     CeedOperatorSetField(op, "dq", ceed_data->elem_restr_q, ceed_data->basis_q,
520f0b65372SJed Brown                          CEED_VECTOR_ACTIVE);
521f0b65372SJed Brown     CeedOperatorSetField(op, "Grad_dq", ceed_data->elem_restr_q, ceed_data->basis_q,
522f0b65372SJed Brown                          CEED_VECTOR_ACTIVE);
523f0b65372SJed Brown     CeedOperatorSetField(op, "qdata", ceed_data->elem_restr_qd_i,
524f0b65372SJed Brown                          CEED_BASIS_COLLOCATED, ceed_data->q_data);
525f0b65372SJed Brown     CeedOperatorSetField(op, "x", ceed_data->elem_restr_x, ceed_data->basis_x,
526f0b65372SJed Brown                          ceed_data->x_coord);
527f0b65372SJed Brown     CeedOperatorSetField(op, "jac_data", elem_restr_jd_i,
528f0b65372SJed Brown                          CEED_BASIS_COLLOCATED, jac_data);
529f0b65372SJed Brown     CeedOperatorSetField(op, "v", ceed_data->elem_restr_q, ceed_data->basis_q,
530f0b65372SJed Brown                          CEED_VECTOR_ACTIVE);
531f0b65372SJed Brown     CeedOperatorSetField(op, "Grad_v", ceed_data->elem_restr_q, ceed_data->basis_q,
532f0b65372SJed Brown                          CEED_VECTOR_ACTIVE);
533f0b65372SJed Brown     op_ijacobian_vol = op;
534f0b65372SJed Brown     CeedQFunctionDestroy(&qf_ijacobian_vol);
535f0b65372SJed Brown   }
536f0b65372SJed Brown 
537a515125bSLeila Ghaffari   // *****************************************************************************
538a515125bSLeila Ghaffari   // Set up CEED objects for the exterior domain (surface)
539a515125bSLeila Ghaffari   // *****************************************************************************
540a515125bSLeila Ghaffari   CeedInt height  = 1,
541a515125bSLeila Ghaffari           dim_sur = dim - height,
542a515125bSLeila Ghaffari           P_sur   = app_ctx->degree + 1,
543a515125bSLeila Ghaffari           Q_sur   = P_sur + app_ctx->q_extra;
544f0b65372SJed Brown   const CeedInt q_data_size_sur = problem->q_data_size_sur,
545f0b65372SJed Brown                 jac_data_size_sur = problem->jac_data_size_sur;
546a515125bSLeila Ghaffari 
547a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
548a515125bSLeila Ghaffari   // CEED Bases
549a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
550a515125bSLeila Ghaffari   CeedBasisCreateTensorH1Lagrange(ceed, dim_sur, num_comp_q, P_sur, Q_sur,
551a515125bSLeila Ghaffari                                   CEED_GAUSS, &ceed_data->basis_q_sur);
552a515125bSLeila Ghaffari   CeedBasisCreateTensorH1Lagrange(ceed, dim_sur, num_comp_x, 2, Q_sur, CEED_GAUSS,
553a515125bSLeila Ghaffari                                   &ceed_data->basis_x_sur);
554da7e3aacSJames Wright   CeedBasisCreateTensorH1Lagrange(ceed, dim_sur, num_comp_x, 2, P_sur,
555da7e3aacSJames Wright                                   CEED_GAUSS_LOBATTO, &ceed_data->basis_xc_sur);
556a515125bSLeila Ghaffari 
557a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
558a515125bSLeila Ghaffari   // CEED QFunctions
559a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
560a515125bSLeila Ghaffari   // -- Create QFunction for quadrature data
5619785fe93SJed Brown   CeedQFunctionCreateInterior(ceed, 1, problem->setup_sur.qfunction,
5629785fe93SJed Brown                               problem->setup_sur.qfunction_loc,
563a515125bSLeila Ghaffari                               &ceed_data->qf_setup_sur);
56415a3537eSJed Brown   if (problem->setup_sur.qfunction_context) {
56515a3537eSJed Brown     CeedQFunctionSetContext(ceed_data->qf_setup_sur,
56615a3537eSJed Brown                             problem->setup_sur.qfunction_context);
56715a3537eSJed Brown     CeedQFunctionContextDestroy(&problem->setup_sur.qfunction_context);
56815a3537eSJed Brown   }
569a515125bSLeila Ghaffari   CeedQFunctionAddInput(ceed_data->qf_setup_sur, "dx", num_comp_x*dim_sur,
570a515125bSLeila Ghaffari                         CEED_EVAL_GRAD);
571a515125bSLeila Ghaffari   CeedQFunctionAddInput(ceed_data->qf_setup_sur, "weight", 1, CEED_EVAL_WEIGHT);
5723b1e209bSJeremy L Thompson   CeedQFunctionAddOutput(ceed_data->qf_setup_sur, "surface qdata",
573002797a3SLeila Ghaffari                          q_data_size_sur, CEED_EVAL_NONE);
574a515125bSLeila Ghaffari 
575*25988f00SJames Wright   PetscCall(SetupBCQFunctions(ceed, dim_sur, num_comp_x, num_comp_q,
576*25988f00SJames Wright                               q_data_size_sur, jac_data_size_sur,
577*25988f00SJames Wright                               problem->apply_inflow, problem->apply_inflow_jacobian,
578*25988f00SJames Wright                               &ceed_data->qf_apply_inflow, &ceed_data->qf_apply_inflow_jacobian));
579002797a3SLeila Ghaffari 
580*25988f00SJames Wright   // -- Create QFunction for outflow boundaries
581*25988f00SJames Wright   PetscCall(SetupBCQFunctions(ceed, dim_sur, num_comp_x, num_comp_q,
582*25988f00SJames Wright                               q_data_size_sur, jac_data_size_sur,
583*25988f00SJames Wright                               problem->apply_outflow, problem->apply_outflow_jacobian,
584*25988f00SJames Wright                               &ceed_data->qf_apply_outflow, &ceed_data->qf_apply_outflow_jacobian));
585a515125bSLeila Ghaffari 
586a515125bSLeila Ghaffari   // *****************************************************************************
587a515125bSLeila Ghaffari   // CEED Operator Apply
588a515125bSLeila Ghaffari   // *****************************************************************************
589a515125bSLeila Ghaffari   // -- Apply CEED Operator for the geometric data
590a515125bSLeila Ghaffari   CeedOperatorApply(ceed_data->op_setup_vol, ceed_data->x_coord,
591a515125bSLeila Ghaffari                     ceed_data->q_data, CEED_REQUEST_IMMEDIATE);
592a515125bSLeila Ghaffari 
593a515125bSLeila Ghaffari   // -- Create and apply CEED Composite Operator for the entire domain
594a515125bSLeila Ghaffari   if (!user->phys->implicit) { // RHS
595a515125bSLeila Ghaffari     ierr = CreateOperatorForDomain(ceed, dm, bc, ceed_data, user->phys,
596f0b65372SJed Brown                                    user->op_rhs_vol, NULL, height, P_sur, Q_sur,
597f0b65372SJed Brown                                    q_data_size_sur, 0,
598f0b65372SJed Brown                                    &user->op_rhs, NULL); CHKERRQ(ierr);
599a515125bSLeila Ghaffari   } else { // IFunction
600a515125bSLeila Ghaffari     ierr = CreateOperatorForDomain(ceed, dm, bc, ceed_data, user->phys,
601f0b65372SJed Brown                                    user->op_ifunction_vol, op_ijacobian_vol,
602f0b65372SJed Brown                                    height, P_sur, Q_sur,
603f0b65372SJed Brown                                    q_data_size_sur, jac_data_size_sur,
604f0b65372SJed Brown                                    &user->op_ifunction,
605f0b65372SJed Brown                                    op_ijacobian_vol ? &user->op_ijacobian : NULL); CHKERRQ(ierr);
606f0b65372SJed Brown     if (user->op_ijacobian) {
607f0b65372SJed Brown       CeedOperatorContextGetFieldLabel(user->op_ijacobian, "ijacobian time shift",
608f0b65372SJed Brown                                        &user->phys->ijacobian_time_shift_label);
609f0b65372SJed Brown     }
6106d0190e2SJames Wright     if (problem->use_dirichlet_ceed) {
6116d0190e2SJames Wright       PetscCall(SetupStrongBC_Ceed(ceed, ceed_data, dm, user, app_ctx, problem, bc,
6126d0190e2SJames Wright                                    Q_sur, q_data_size_sur));
6136d0190e2SJames Wright     }
614f0b65372SJed Brown 
615a515125bSLeila Ghaffari   }
616752f40e3SJed Brown   CeedElemRestrictionDestroy(&elem_restr_jd_i);
617e22e0f1cSLeila Ghaffari   CeedOperatorDestroy(&op_ijacobian_vol);
618752f40e3SJed Brown   CeedVectorDestroy(&jac_data);
619a515125bSLeila Ghaffari   PetscFunctionReturn(0);
620a515125bSLeila Ghaffari }
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