xref: /honee/src/setuplibceed.c (revision e22e0f1c61cd242ee88fb21f971b81e85072e7a0)
1727da7e7SJeremy L Thompson // Copyright (c) 2017-2022, Lawrence Livermore National Security, LLC and other CEED contributors.
2727da7e7SJeremy L Thompson // All Rights Reserved. See the top-level LICENSE and NOTICE files for details.
3a515125bSLeila Ghaffari //
4727da7e7SJeremy L Thompson // SPDX-License-Identifier: BSD-2-Clause
5a515125bSLeila Ghaffari //
6727da7e7SJeremy L Thompson // This file is part of CEED:  http://github.com/ceed
7a515125bSLeila Ghaffari 
8a515125bSLeila Ghaffari /// @file
9a515125bSLeila Ghaffari /// Setup libCEED for Navier-Stokes example using PETSc
10a515125bSLeila Ghaffari 
11a515125bSLeila Ghaffari #include "../navierstokes.h"
12a515125bSLeila Ghaffari 
13a515125bSLeila Ghaffari // Utility function - essential BC dofs are encoded in closure indices as -(i+1).
14a515125bSLeila Ghaffari PetscInt Involute(PetscInt i) {
15a515125bSLeila Ghaffari   return i >= 0 ? i : -(i+1);
16a515125bSLeila Ghaffari }
17a515125bSLeila Ghaffari 
18a515125bSLeila Ghaffari // Utility function to create local CEED restriction
196b1ccf21SJeremy L Thompson PetscErrorCode CreateRestrictionFromPlex(Ceed ceed, DM dm, CeedInt height,
206b1ccf21SJeremy L Thompson     DMLabel domain_label, CeedInt value, CeedElemRestriction *elem_restr) {
216b1ccf21SJeremy L Thompson   PetscInt num_elem, elem_size, num_dof, num_comp, *elem_restr_offsets;
22a515125bSLeila Ghaffari   PetscErrorCode ierr;
236b1ccf21SJeremy L Thompson 
24a515125bSLeila Ghaffari   PetscFunctionBeginUser;
256b1ccf21SJeremy L Thompson   ierr = DMPlexGetLocalOffsets(dm, domain_label, value, height, 0, &num_elem,
266b1ccf21SJeremy L Thompson                                &elem_size, &num_comp, &num_dof, &elem_restr_offsets);
276b1ccf21SJeremy L Thompson   CHKERRQ(ierr);
28a515125bSLeila Ghaffari 
296b1ccf21SJeremy L Thompson   CeedElemRestrictionCreate(ceed, num_elem, elem_size, num_comp,
306b1ccf21SJeremy L Thompson                             1, num_dof, CEED_MEM_HOST, CEED_COPY_VALUES,
316b1ccf21SJeremy L Thompson                             elem_restr_offsets, elem_restr);
326b1ccf21SJeremy L Thompson   ierr = PetscFree(elem_restr_offsets); CHKERRQ(ierr);
33a515125bSLeila Ghaffari 
34a515125bSLeila Ghaffari   PetscFunctionReturn(0);
35a515125bSLeila Ghaffari }
36a515125bSLeila Ghaffari 
37a515125bSLeila Ghaffari // Utility function to get Ceed Restriction for each domain
38a515125bSLeila Ghaffari PetscErrorCode GetRestrictionForDomain(Ceed ceed, DM dm, CeedInt height,
39a515125bSLeila Ghaffari                                        DMLabel domain_label, PetscInt value,
406b1ccf21SJeremy L Thompson                                        CeedInt Q, CeedInt q_data_size,
41a515125bSLeila Ghaffari                                        CeedElemRestriction *elem_restr_q,
42a515125bSLeila Ghaffari                                        CeedElemRestriction *elem_restr_x,
43a515125bSLeila Ghaffari                                        CeedElemRestriction *elem_restr_qd_i) {
44a515125bSLeila Ghaffari   DM             dm_coord;
45a515125bSLeila Ghaffari   CeedInt        dim, loc_num_elem;
46a515125bSLeila Ghaffari   CeedInt        Q_dim;
47395c96d3SJed Brown   CeedElemRestriction elem_restr_tmp;
48a515125bSLeila Ghaffari   PetscErrorCode ierr;
49a515125bSLeila Ghaffari   PetscFunctionBeginUser;
50a515125bSLeila Ghaffari 
51a515125bSLeila Ghaffari   ierr = DMGetDimension(dm, &dim); CHKERRQ(ierr);
52a515125bSLeila Ghaffari   dim -= height;
53a515125bSLeila Ghaffari   Q_dim = CeedIntPow(Q, dim);
54395c96d3SJed Brown   ierr = CreateRestrictionFromPlex(ceed, dm, height, domain_label, value,
55395c96d3SJed Brown                                    &elem_restr_tmp);
56395c96d3SJed Brown   CHKERRQ(ierr);
57395c96d3SJed Brown   if (elem_restr_q) *elem_restr_q = elem_restr_tmp;
58395c96d3SJed Brown   if (elem_restr_x) {
59a515125bSLeila Ghaffari     ierr = DMGetCoordinateDM(dm, &dm_coord); CHKERRQ(ierr);
60a515125bSLeila Ghaffari     ierr = DMPlexSetClosurePermutationTensor(dm_coord, PETSC_DETERMINE, NULL);
61a515125bSLeila Ghaffari     CHKERRQ(ierr);
626b1ccf21SJeremy L Thompson     ierr = CreateRestrictionFromPlex(ceed, dm_coord, height, domain_label, value,
636b1ccf21SJeremy L Thompson                                      elem_restr_x);
646b1ccf21SJeremy L Thompson     CHKERRQ(ierr);
65395c96d3SJed Brown   }
66395c96d3SJed Brown   if (elem_restr_qd_i) {
67395c96d3SJed Brown     CeedElemRestrictionGetNumElements(elem_restr_tmp, &loc_num_elem);
68a515125bSLeila Ghaffari     CeedElemRestrictionCreateStrided(ceed, loc_num_elem, Q_dim,
69a515125bSLeila Ghaffari                                      q_data_size, q_data_size*loc_num_elem*Q_dim,
70a515125bSLeila Ghaffari                                      CEED_STRIDES_BACKEND, elem_restr_qd_i);
71395c96d3SJed Brown   }
72395c96d3SJed Brown   if (!elem_restr_q) CeedElemRestrictionDestroy(&elem_restr_tmp);
73a515125bSLeila Ghaffari   PetscFunctionReturn(0);
74a515125bSLeila Ghaffari }
75a515125bSLeila Ghaffari 
76a515125bSLeila Ghaffari // Utility function to create CEED Composite Operator for the entire domain
77a515125bSLeila Ghaffari PetscErrorCode CreateOperatorForDomain(Ceed ceed, DM dm, SimpleBC bc,
78a515125bSLeila Ghaffari                                        CeedData ceed_data, Physics phys,
79f0b65372SJed Brown                                        CeedOperator op_apply_vol,
80f0b65372SJed Brown                                        CeedOperator op_apply_ijacobian_vol,
81f0b65372SJed Brown                                        CeedInt height,
82f0b65372SJed Brown                                        CeedInt P_sur, CeedInt Q_sur,
83f0b65372SJed Brown                                        CeedInt q_data_size_sur, CeedInt jac_data_size_sur,
84f0b65372SJed Brown                                        CeedOperator *op_apply, CeedOperator *op_apply_ijacobian) {
85002797a3SLeila Ghaffari   //CeedInt        dim;
86a515125bSLeila Ghaffari   DMLabel        domain_label;
87a515125bSLeila Ghaffari   PetscErrorCode ierr;
88a515125bSLeila Ghaffari   PetscFunctionBeginUser;
89a515125bSLeila Ghaffari 
90a515125bSLeila Ghaffari   // Create Composite Operaters
91a515125bSLeila Ghaffari   CeedCompositeOperatorCreate(ceed, op_apply);
92f0b65372SJed Brown   if (op_apply_ijacobian)
93f0b65372SJed Brown     CeedCompositeOperatorCreate(ceed, op_apply_ijacobian);
94a515125bSLeila Ghaffari 
95a515125bSLeila Ghaffari   // --Apply Sub-Operator for the volume
96a515125bSLeila Ghaffari   CeedCompositeOperatorAddSub(*op_apply, op_apply_vol);
97f0b65372SJed Brown   if (op_apply_ijacobian)
98f0b65372SJed Brown     CeedCompositeOperatorAddSub(*op_apply_ijacobian, op_apply_ijacobian_vol);
99a515125bSLeila Ghaffari 
100a515125bSLeila Ghaffari   // -- Create Sub-Operator for in/outflow BCs
101bb8a0c61SJames Wright   if (phys->has_neumann || 1) {
102a515125bSLeila Ghaffari     // --- Setup
103a515125bSLeila Ghaffari     ierr = DMGetLabel(dm, "Face Sets", &domain_label); CHKERRQ(ierr);
104002797a3SLeila Ghaffari     //ierr = DMGetDimension(dm, &dim); CHKERRQ(ierr);
105a515125bSLeila Ghaffari 
106a515125bSLeila Ghaffari     // --- Get number of quadrature points for the boundaries
107a515125bSLeila Ghaffari     CeedInt num_qpts_sur;
108a515125bSLeila Ghaffari     CeedBasisGetNumQuadraturePoints(ceed_data->basis_q_sur, &num_qpts_sur);
109a515125bSLeila Ghaffari 
110002797a3SLeila Ghaffari     // --- Create Sub-Operator for inflow boundaries
111002797a3SLeila Ghaffari     for (CeedInt i=0; i < bc->num_inflow; i++) {
112a515125bSLeila Ghaffari       CeedVector          q_data_sur;
113f0b65372SJed Brown       CeedOperator        op_setup_sur, op_apply_inflow,
114f0b65372SJed Brown                           op_apply_inflow_jacobian = NULL;
115002797a3SLeila Ghaffari       CeedElemRestriction elem_restr_x_sur, elem_restr_q_sur, elem_restr_qd_i_sur;
116a515125bSLeila Ghaffari 
117a515125bSLeila Ghaffari       // ---- CEED Restriction
118002797a3SLeila Ghaffari       ierr = GetRestrictionForDomain(ceed, dm, height, domain_label, bc->inflows[i],
119002797a3SLeila Ghaffari                                      Q_sur, q_data_size_sur, &elem_restr_q_sur, &elem_restr_x_sur,
120002797a3SLeila Ghaffari                                      &elem_restr_qd_i_sur);
121a515125bSLeila Ghaffari       CHKERRQ(ierr);
122a515125bSLeila Ghaffari 
123a515125bSLeila Ghaffari       // ---- CEED Vector
124a515125bSLeila Ghaffari       PetscInt loc_num_elem_sur;
125a515125bSLeila Ghaffari       CeedElemRestrictionGetNumElements(elem_restr_q_sur, &loc_num_elem_sur);
126a515125bSLeila Ghaffari       CeedVectorCreate(ceed, q_data_size_sur*loc_num_elem_sur*num_qpts_sur,
127a515125bSLeila Ghaffari                        &q_data_sur);
128a515125bSLeila Ghaffari 
129a515125bSLeila Ghaffari       // ---- CEED Operator
130a515125bSLeila Ghaffari       // ----- CEED Operator for Setup (geometric factors)
131a515125bSLeila Ghaffari       CeedOperatorCreate(ceed, ceed_data->qf_setup_sur, NULL, NULL, &op_setup_sur);
132a515125bSLeila Ghaffari       CeedOperatorSetField(op_setup_sur, "dx", elem_restr_x_sur,
133139613f2SLeila Ghaffari                            ceed_data->basis_x_sur, CEED_VECTOR_ACTIVE);
134a515125bSLeila Ghaffari       CeedOperatorSetField(op_setup_sur, "weight", CEED_ELEMRESTRICTION_NONE,
135a515125bSLeila Ghaffari                            ceed_data->basis_x_sur, CEED_VECTOR_NONE);
1363b1e209bSJeremy L Thompson       CeedOperatorSetField(op_setup_sur, "surface qdata", elem_restr_qd_i_sur,
137a515125bSLeila Ghaffari                            CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE);
138a515125bSLeila Ghaffari 
139a515125bSLeila Ghaffari       // ----- CEED Operator for Physics
140002797a3SLeila Ghaffari       CeedOperatorCreate(ceed, ceed_data->qf_apply_inflow, NULL, NULL,
141002797a3SLeila Ghaffari                          &op_apply_inflow);
142002797a3SLeila Ghaffari       CeedOperatorSetField(op_apply_inflow, "q", elem_restr_q_sur,
143a515125bSLeila Ghaffari                            ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
144002797a3SLeila Ghaffari       CeedOperatorSetField(op_apply_inflow, "surface qdata", elem_restr_qd_i_sur,
145a515125bSLeila Ghaffari                            CEED_BASIS_COLLOCATED, q_data_sur);
146002797a3SLeila Ghaffari       CeedOperatorSetField(op_apply_inflow, "x", elem_restr_x_sur,
147a515125bSLeila Ghaffari                            ceed_data->basis_x_sur, ceed_data->x_coord);
148002797a3SLeila Ghaffari       CeedOperatorSetField(op_apply_inflow, "v", elem_restr_q_sur,
149a515125bSLeila Ghaffari                            ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
150a515125bSLeila Ghaffari 
151f0b65372SJed Brown       if (ceed_data->qf_apply_inflow_jacobian) {
152f0b65372SJed Brown         CeedOperatorCreate(ceed, ceed_data->qf_apply_inflow_jacobian, NULL, NULL,
153f0b65372SJed Brown                            &op_apply_inflow_jacobian);
154f0b65372SJed Brown         CeedOperatorSetField(op_apply_inflow_jacobian, "dq", elem_restr_q_sur,
155f0b65372SJed Brown                              ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
156f0b65372SJed Brown         CeedOperatorSetField(op_apply_inflow_jacobian, "surface qdata",
157f0b65372SJed Brown                              elem_restr_qd_i_sur,
158f0b65372SJed Brown                              CEED_BASIS_COLLOCATED, q_data_sur);
159f0b65372SJed Brown         CeedOperatorSetField(op_apply_inflow_jacobian, "x", elem_restr_x_sur,
160f0b65372SJed Brown                              ceed_data->basis_x_sur, ceed_data->x_coord);
161f0b65372SJed Brown         CeedOperatorSetField(op_apply_inflow_jacobian, "v", elem_restr_q_sur,
162f0b65372SJed Brown                              ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
163f0b65372SJed Brown       }
164f0b65372SJed Brown 
165a515125bSLeila Ghaffari       // ----- Apply CEED operator for Setup
166a515125bSLeila Ghaffari       CeedOperatorApply(op_setup_sur, ceed_data->x_coord, q_data_sur,
167a515125bSLeila Ghaffari                         CEED_REQUEST_IMMEDIATE);
168a515125bSLeila Ghaffari 
169002797a3SLeila Ghaffari       // ----- Apply Sub-Operator for Physics
170002797a3SLeila Ghaffari       CeedCompositeOperatorAddSub(*op_apply, op_apply_inflow);
171f0b65372SJed Brown       if (op_apply_ijacobian)
172f0b65372SJed Brown         CeedCompositeOperatorAddSub(*op_apply_ijacobian, op_apply_inflow_jacobian);
173a515125bSLeila Ghaffari 
174a515125bSLeila Ghaffari       // ----- Cleanup
175a515125bSLeila Ghaffari       CeedVectorDestroy(&q_data_sur);
176a515125bSLeila Ghaffari       CeedElemRestrictionDestroy(&elem_restr_q_sur);
177a515125bSLeila Ghaffari       CeedElemRestrictionDestroy(&elem_restr_x_sur);
178a515125bSLeila Ghaffari       CeedElemRestrictionDestroy(&elem_restr_qd_i_sur);
179a515125bSLeila Ghaffari       CeedOperatorDestroy(&op_setup_sur);
180002797a3SLeila Ghaffari       CeedOperatorDestroy(&op_apply_inflow);
181f0b65372SJed Brown       CeedOperatorDestroy(&op_apply_inflow_jacobian);
182a515125bSLeila Ghaffari     }
183a515125bSLeila Ghaffari 
184002797a3SLeila Ghaffari     // --- Create Sub-Operator for outflow boundaries
185002797a3SLeila Ghaffari     for (CeedInt i=0; i < bc->num_outflow; i++) {
186f0b65372SJed Brown       CeedVector          q_data_sur, jac_data_sur;
187f0b65372SJed Brown       CeedOperator        op_setup_sur, op_apply_outflow,
188f0b65372SJed Brown                           op_apply_outflow_jacobian = NULL;
189f0b65372SJed Brown       CeedElemRestriction elem_restr_x_sur, elem_restr_q_sur, elem_restr_qd_i_sur,
190f0b65372SJed Brown                           elem_restr_jd_i_sur;
191002797a3SLeila Ghaffari 
192002797a3SLeila Ghaffari       // ---- CEED Restriction
193002797a3SLeila Ghaffari       ierr = GetRestrictionForDomain(ceed, dm, height, domain_label, bc->outflows[i],
194002797a3SLeila Ghaffari                                      Q_sur, q_data_size_sur, &elem_restr_q_sur, &elem_restr_x_sur,
195002797a3SLeila Ghaffari                                      &elem_restr_qd_i_sur);
196002797a3SLeila Ghaffari       CHKERRQ(ierr);
1972556a851SJed Brown       if (jac_data_size_sur > 0) {
1982556a851SJed Brown         // State-dependent data will be passed from residual to Jacobian. This will be collocated.
199f0b65372SJed Brown         ierr = GetRestrictionForDomain(ceed, dm, height, domain_label, bc->outflows[i],
200f0b65372SJed Brown                                        Q_sur, jac_data_size_sur, NULL, NULL,
201f0b65372SJed Brown                                        &elem_restr_jd_i_sur);
202f0b65372SJed Brown         CHKERRQ(ierr);
2032556a851SJed Brown         CeedElemRestrictionCreateVector(elem_restr_jd_i_sur, &jac_data_sur, NULL);
2042556a851SJed Brown       } else {
2052556a851SJed Brown         elem_restr_jd_i_sur = NULL;
2062556a851SJed Brown         jac_data_sur = NULL;
2072556a851SJed Brown       }
208002797a3SLeila Ghaffari 
209002797a3SLeila Ghaffari       // ---- CEED Vector
210002797a3SLeila Ghaffari       PetscInt loc_num_elem_sur;
211002797a3SLeila Ghaffari       CeedElemRestrictionGetNumElements(elem_restr_q_sur, &loc_num_elem_sur);
212002797a3SLeila Ghaffari       CeedVectorCreate(ceed, q_data_size_sur*loc_num_elem_sur*num_qpts_sur,
213002797a3SLeila Ghaffari                        &q_data_sur);
214002797a3SLeila Ghaffari 
215002797a3SLeila Ghaffari       // ---- CEED Operator
216002797a3SLeila Ghaffari       // ----- CEED Operator for Setup (geometric factors)
217002797a3SLeila Ghaffari       CeedOperatorCreate(ceed, ceed_data->qf_setup_sur, NULL, NULL, &op_setup_sur);
218002797a3SLeila Ghaffari       CeedOperatorSetField(op_setup_sur, "dx", elem_restr_x_sur,
219002797a3SLeila Ghaffari                            ceed_data->basis_x_sur, CEED_VECTOR_ACTIVE);
220002797a3SLeila Ghaffari       CeedOperatorSetField(op_setup_sur, "weight", CEED_ELEMRESTRICTION_NONE,
221002797a3SLeila Ghaffari                            ceed_data->basis_x_sur, CEED_VECTOR_NONE);
222002797a3SLeila Ghaffari       CeedOperatorSetField(op_setup_sur, "surface qdata", elem_restr_qd_i_sur,
223002797a3SLeila Ghaffari                            CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE);
224002797a3SLeila Ghaffari 
225002797a3SLeila Ghaffari       // ----- CEED Operator for Physics
226002797a3SLeila Ghaffari       CeedOperatorCreate(ceed, ceed_data->qf_apply_outflow, NULL, NULL,
227002797a3SLeila Ghaffari                          &op_apply_outflow);
228002797a3SLeila Ghaffari       CeedOperatorSetField(op_apply_outflow, "q", elem_restr_q_sur,
229002797a3SLeila Ghaffari                            ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
230002797a3SLeila Ghaffari       CeedOperatorSetField(op_apply_outflow, "surface qdata", elem_restr_qd_i_sur,
231002797a3SLeila Ghaffari                            CEED_BASIS_COLLOCATED, q_data_sur);
232002797a3SLeila Ghaffari       CeedOperatorSetField(op_apply_outflow, "x", elem_restr_x_sur,
233002797a3SLeila Ghaffari                            ceed_data->basis_x_sur, ceed_data->x_coord);
234002797a3SLeila Ghaffari       CeedOperatorSetField(op_apply_outflow, "v", elem_restr_q_sur,
235002797a3SLeila Ghaffari                            ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
2362556a851SJed Brown       if (elem_restr_jd_i_sur)
237f0b65372SJed Brown         CeedOperatorSetField(op_apply_outflow, "surface jacobian data",
238f0b65372SJed Brown                              elem_restr_jd_i_sur,
239f0b65372SJed Brown                              CEED_BASIS_COLLOCATED, jac_data_sur);
240f0b65372SJed Brown 
241f0b65372SJed Brown       if (ceed_data->qf_apply_outflow_jacobian) {
242f0b65372SJed Brown         CeedOperatorCreate(ceed, ceed_data->qf_apply_outflow_jacobian, NULL, NULL,
243f0b65372SJed Brown                            &op_apply_outflow_jacobian);
244f0b65372SJed Brown         CeedOperatorSetField(op_apply_outflow_jacobian, "dq", elem_restr_q_sur,
245f0b65372SJed Brown                              ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
246f0b65372SJed Brown         CeedOperatorSetField(op_apply_outflow_jacobian, "surface qdata",
247f0b65372SJed Brown                              elem_restr_qd_i_sur,
248f0b65372SJed Brown                              CEED_BASIS_COLLOCATED, q_data_sur);
249f0b65372SJed Brown         CeedOperatorSetField(op_apply_outflow_jacobian, "surface jacobian data",
250f0b65372SJed Brown                              elem_restr_jd_i_sur,
251f0b65372SJed Brown                              CEED_BASIS_COLLOCATED, jac_data_sur);
252f0b65372SJed Brown         CeedOperatorSetField(op_apply_outflow_jacobian, "v", elem_restr_q_sur,
253f0b65372SJed Brown                              ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
254f0b65372SJed Brown       }
255002797a3SLeila Ghaffari 
256002797a3SLeila Ghaffari       // ----- Apply CEED operator for Setup
257002797a3SLeila Ghaffari       CeedOperatorApply(op_setup_sur, ceed_data->x_coord, q_data_sur,
258002797a3SLeila Ghaffari                         CEED_REQUEST_IMMEDIATE);
259002797a3SLeila Ghaffari 
260002797a3SLeila Ghaffari       // ----- Apply Sub-Operator for Physics
261002797a3SLeila Ghaffari       CeedCompositeOperatorAddSub(*op_apply, op_apply_outflow);
262f0b65372SJed Brown       if (op_apply_ijacobian)
263f0b65372SJed Brown         CeedCompositeOperatorAddSub(*op_apply_ijacobian, op_apply_outflow_jacobian);
264002797a3SLeila Ghaffari 
265002797a3SLeila Ghaffari       // ----- Cleanup
266002797a3SLeila Ghaffari       CeedVectorDestroy(&q_data_sur);
267f0b65372SJed Brown       CeedVectorDestroy(&jac_data_sur);
268002797a3SLeila Ghaffari       CeedElemRestrictionDestroy(&elem_restr_q_sur);
269002797a3SLeila Ghaffari       CeedElemRestrictionDestroy(&elem_restr_x_sur);
270002797a3SLeila Ghaffari       CeedElemRestrictionDestroy(&elem_restr_qd_i_sur);
271f0b65372SJed Brown       CeedElemRestrictionDestroy(&elem_restr_jd_i_sur);
272002797a3SLeila Ghaffari       CeedOperatorDestroy(&op_setup_sur);
273002797a3SLeila Ghaffari       CeedOperatorDestroy(&op_apply_outflow);
274f0b65372SJed Brown       CeedOperatorDestroy(&op_apply_outflow_jacobian);
275002797a3SLeila Ghaffari     }
276002797a3SLeila Ghaffari   }
27792ada588SJames Wright 
27892ada588SJames Wright   // ----- Get Context Labels for Operator
27992ada588SJames Wright   CeedOperatorContextGetFieldLabel(*op_apply, "solution time",
28092ada588SJames Wright                                    &phys->solution_time_label);
281bb8a0c61SJames Wright   CeedOperatorContextGetFieldLabel(*op_apply, "timestep size",
282bb8a0c61SJames Wright                                    &phys->timestep_size_label);
28392ada588SJames Wright 
284a515125bSLeila Ghaffari   PetscFunctionReturn(0);
285a515125bSLeila Ghaffari }
286a515125bSLeila Ghaffari 
287a515125bSLeila Ghaffari PetscErrorCode SetupLibceed(Ceed ceed, CeedData ceed_data, DM dm, User user,
288c848b8b7SJed Brown                             AppCtx app_ctx, ProblemData *problem, SimpleBC bc) {
289a515125bSLeila Ghaffari   PetscErrorCode ierr;
290a515125bSLeila Ghaffari   PetscFunctionBeginUser;
291a515125bSLeila Ghaffari 
292a515125bSLeila Ghaffari   // *****************************************************************************
293a515125bSLeila Ghaffari   // Set up CEED objects for the interior domain (volume)
294a515125bSLeila Ghaffari   // *****************************************************************************
295a515125bSLeila Ghaffari   const PetscInt num_comp_q      = 5;
296a515125bSLeila Ghaffari   const CeedInt  dim             = problem->dim,
297a515125bSLeila Ghaffari                  num_comp_x      = problem->dim,
298a515125bSLeila Ghaffari                  q_data_size_vol = problem->q_data_size_vol,
299f0b65372SJed Brown                  jac_data_size_vol = num_comp_q + 6 + 3,
300a515125bSLeila Ghaffari                  P               = app_ctx->degree + 1,
301a515125bSLeila Ghaffari                  Q               = P + app_ctx->q_extra;
302752f40e3SJed Brown   CeedElemRestriction elem_restr_jd_i;
303752f40e3SJed Brown   CeedVector jac_data;
304a515125bSLeila Ghaffari 
305a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
306a515125bSLeila Ghaffari   // CEED Bases
307a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
308a515125bSLeila Ghaffari   CeedBasisCreateTensorH1Lagrange(ceed, dim, num_comp_q, P, Q, CEED_GAUSS,
309a515125bSLeila Ghaffari                                   &ceed_data->basis_q);
310a515125bSLeila Ghaffari   CeedBasisCreateTensorH1Lagrange(ceed, dim, num_comp_x, 2, Q, CEED_GAUSS,
311a515125bSLeila Ghaffari                                   &ceed_data->basis_x);
312a515125bSLeila Ghaffari   CeedBasisCreateTensorH1Lagrange(ceed, dim, num_comp_x, 2, P,
313a515125bSLeila Ghaffari                                   CEED_GAUSS_LOBATTO, &ceed_data->basis_xc);
314a515125bSLeila Ghaffari 
315a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
316a515125bSLeila Ghaffari   // CEED Restrictions
317a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
318a515125bSLeila Ghaffari   // -- Create restriction
3196b1ccf21SJeremy L Thompson   ierr = GetRestrictionForDomain(ceed, dm, 0, 0, 0, Q, q_data_size_vol,
3206b1ccf21SJeremy L Thompson                                  &ceed_data->elem_restr_q, &ceed_data->elem_restr_x,
321a515125bSLeila Ghaffari                                  &ceed_data->elem_restr_qd_i); CHKERRQ(ierr);
322752f40e3SJed Brown 
323752f40e3SJed Brown   ierr = GetRestrictionForDomain(ceed, dm, 0, 0, 0, Q, jac_data_size_vol,
324752f40e3SJed Brown                                  NULL, NULL,
325752f40e3SJed Brown                                  &elem_restr_jd_i); CHKERRQ(ierr);
326a515125bSLeila Ghaffari // -- Create E vectors
327a515125bSLeila Ghaffari   CeedElemRestrictionCreateVector(ceed_data->elem_restr_q, &user->q_ceed, NULL);
328a515125bSLeila Ghaffari   CeedElemRestrictionCreateVector(ceed_data->elem_restr_q, &user->q_dot_ceed,
329a515125bSLeila Ghaffari                                   NULL);
330a515125bSLeila Ghaffari   CeedElemRestrictionCreateVector(ceed_data->elem_restr_q, &user->g_ceed, NULL);
331a515125bSLeila Ghaffari 
332a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
333a515125bSLeila Ghaffari   // CEED QFunctions
334a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
335a515125bSLeila Ghaffari   // -- Create QFunction for quadrature data
3369785fe93SJed Brown   CeedQFunctionCreateInterior(ceed, 1, problem->setup_vol.qfunction,
3379785fe93SJed Brown                               problem->setup_vol.qfunction_loc,
338a515125bSLeila Ghaffari                               &ceed_data->qf_setup_vol);
33915a3537eSJed Brown   if (problem->setup_vol.qfunction_context) {
34015a3537eSJed Brown     CeedQFunctionSetContext(ceed_data->qf_setup_vol,
34115a3537eSJed Brown                             problem->setup_vol.qfunction_context);
34215a3537eSJed Brown     CeedQFunctionContextDestroy(&problem->setup_vol.qfunction_context);
34315a3537eSJed Brown   }
344a515125bSLeila Ghaffari   CeedQFunctionAddInput(ceed_data->qf_setup_vol, "dx", num_comp_x*dim,
345a515125bSLeila Ghaffari                         CEED_EVAL_GRAD);
346a515125bSLeila Ghaffari   CeedQFunctionAddInput(ceed_data->qf_setup_vol, "weight", 1, CEED_EVAL_WEIGHT);
3473b1e209bSJeremy L Thompson   CeedQFunctionAddOutput(ceed_data->qf_setup_vol, "qdata", q_data_size_vol,
348a515125bSLeila Ghaffari                          CEED_EVAL_NONE);
349a515125bSLeila Ghaffari 
350a515125bSLeila Ghaffari   // -- Create QFunction for ICs
3519785fe93SJed Brown   CeedQFunctionCreateInterior(ceed, 1, problem->ics.qfunction,
3529785fe93SJed Brown                               problem->ics.qfunction_loc,
353a515125bSLeila Ghaffari                               &ceed_data->qf_ics);
35415a3537eSJed Brown   CeedQFunctionSetContext(ceed_data->qf_ics, problem->ics.qfunction_context);
35515a3537eSJed Brown   CeedQFunctionContextDestroy(&problem->ics.qfunction_context);
356a515125bSLeila Ghaffari   CeedQFunctionAddInput(ceed_data->qf_ics, "x", num_comp_x, CEED_EVAL_INTERP);
357a515125bSLeila Ghaffari   CeedQFunctionAddOutput(ceed_data->qf_ics, "q0", num_comp_q, CEED_EVAL_NONE);
358a515125bSLeila Ghaffari 
359a515125bSLeila Ghaffari   // -- Create QFunction for RHS
3609785fe93SJed Brown   if (problem->apply_vol_rhs.qfunction) {
3619785fe93SJed Brown     CeedQFunctionCreateInterior(ceed, 1, problem->apply_vol_rhs.qfunction,
3629785fe93SJed Brown                                 problem->apply_vol_rhs.qfunction_loc, &ceed_data->qf_rhs_vol);
36315a3537eSJed Brown     CeedQFunctionSetContext(ceed_data->qf_rhs_vol,
36415a3537eSJed Brown                             problem->apply_vol_rhs.qfunction_context);
36515a3537eSJed Brown     CeedQFunctionContextDestroy(&problem->apply_vol_rhs.qfunction_context);
366a515125bSLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_rhs_vol, "q", num_comp_q, CEED_EVAL_INTERP);
367752f40e3SJed Brown     CeedQFunctionAddInput(ceed_data->qf_rhs_vol, "Grad_q", num_comp_q*dim,
368a515125bSLeila Ghaffari                           CEED_EVAL_GRAD);
3693b1e209bSJeremy L Thompson     CeedQFunctionAddInput(ceed_data->qf_rhs_vol, "qdata", q_data_size_vol,
370a515125bSLeila Ghaffari                           CEED_EVAL_NONE);
371a515125bSLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_rhs_vol, "x", num_comp_x, CEED_EVAL_INTERP);
372a515125bSLeila Ghaffari     CeedQFunctionAddOutput(ceed_data->qf_rhs_vol, "v", num_comp_q,
373a515125bSLeila Ghaffari                            CEED_EVAL_INTERP);
374752f40e3SJed Brown     CeedQFunctionAddOutput(ceed_data->qf_rhs_vol, "Grad_v", num_comp_q*dim,
375a515125bSLeila Ghaffari                            CEED_EVAL_GRAD);
376a515125bSLeila Ghaffari   }
377a515125bSLeila Ghaffari 
378a515125bSLeila Ghaffari   // -- Create QFunction for IFunction
3799785fe93SJed Brown   if (problem->apply_vol_ifunction.qfunction) {
3809785fe93SJed Brown     CeedQFunctionCreateInterior(ceed, 1, problem->apply_vol_ifunction.qfunction,
3819785fe93SJed Brown                                 problem->apply_vol_ifunction.qfunction_loc, &ceed_data->qf_ifunction_vol);
38215a3537eSJed Brown     CeedQFunctionSetContext(ceed_data->qf_ifunction_vol,
38315a3537eSJed Brown                             problem->apply_vol_ifunction.qfunction_context);
38415a3537eSJed Brown     CeedQFunctionContextDestroy(&problem->apply_vol_ifunction.qfunction_context);
385a515125bSLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_ifunction_vol, "q", num_comp_q,
386a515125bSLeila Ghaffari                           CEED_EVAL_INTERP);
387752f40e3SJed Brown     CeedQFunctionAddInput(ceed_data->qf_ifunction_vol, "Grad_q", num_comp_q*dim,
388a515125bSLeila Ghaffari                           CEED_EVAL_GRAD);
3893b1e209bSJeremy L Thompson     CeedQFunctionAddInput(ceed_data->qf_ifunction_vol, "q dot", num_comp_q,
390a515125bSLeila Ghaffari                           CEED_EVAL_INTERP);
3913b1e209bSJeremy L Thompson     CeedQFunctionAddInput(ceed_data->qf_ifunction_vol, "qdata", q_data_size_vol,
392a515125bSLeila Ghaffari                           CEED_EVAL_NONE);
393a515125bSLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_ifunction_vol, "x", num_comp_x,
394a515125bSLeila Ghaffari                           CEED_EVAL_INTERP);
395a515125bSLeila Ghaffari     CeedQFunctionAddOutput(ceed_data->qf_ifunction_vol, "v", num_comp_q,
396a515125bSLeila Ghaffari                            CEED_EVAL_INTERP);
397752f40e3SJed Brown     CeedQFunctionAddOutput(ceed_data->qf_ifunction_vol, "Grad_v", num_comp_q*dim,
398a515125bSLeila Ghaffari                            CEED_EVAL_GRAD);
399752f40e3SJed Brown     CeedQFunctionAddOutput(ceed_data->qf_ifunction_vol, "jac_data",
400752f40e3SJed Brown                            jac_data_size_vol, CEED_EVAL_NONE);
401a515125bSLeila Ghaffari   }
402a515125bSLeila Ghaffari 
403f0b65372SJed Brown   CeedQFunction qf_ijacobian_vol = NULL;
404f0b65372SJed Brown   if (problem->apply_vol_ijacobian.qfunction) {
405f0b65372SJed Brown     CeedQFunctionCreateInterior(ceed, 1, problem->apply_vol_ijacobian.qfunction,
406f0b65372SJed Brown                                 problem->apply_vol_ijacobian.qfunction_loc, &qf_ijacobian_vol);
407f0b65372SJed Brown     CeedQFunctionSetContext(qf_ijacobian_vol,
408f0b65372SJed Brown                             problem->apply_vol_ijacobian.qfunction_context);
409f0b65372SJed Brown     CeedQFunctionContextDestroy(&problem->apply_vol_ijacobian.qfunction_context);
410f0b65372SJed Brown     CeedQFunctionAddInput(qf_ijacobian_vol, "dq", num_comp_q,
411f0b65372SJed Brown                           CEED_EVAL_INTERP);
412f0b65372SJed Brown     CeedQFunctionAddInput(qf_ijacobian_vol, "Grad_dq", num_comp_q*dim,
413f0b65372SJed Brown                           CEED_EVAL_GRAD);
414f0b65372SJed Brown     CeedQFunctionAddInput(qf_ijacobian_vol, "qdata", q_data_size_vol,
415f0b65372SJed Brown                           CEED_EVAL_NONE);
416f0b65372SJed Brown     CeedQFunctionAddInput(qf_ijacobian_vol, "x", num_comp_x,
417f0b65372SJed Brown                           CEED_EVAL_INTERP);
418f0b65372SJed Brown     CeedQFunctionAddInput(qf_ijacobian_vol, "jac_data",
419f0b65372SJed Brown                           jac_data_size_vol, CEED_EVAL_NONE);
420f0b65372SJed Brown     CeedQFunctionAddOutput(qf_ijacobian_vol, "v", num_comp_q,
421f0b65372SJed Brown                            CEED_EVAL_INTERP);
422f0b65372SJed Brown     CeedQFunctionAddOutput(qf_ijacobian_vol, "Grad_v", num_comp_q*dim,
423f0b65372SJed Brown                            CEED_EVAL_GRAD);
424f0b65372SJed Brown   }
425f0b65372SJed Brown 
426a515125bSLeila Ghaffari   // ---------------------------------------------------------------------------
427a515125bSLeila Ghaffari   // Element coordinates
428a515125bSLeila Ghaffari   // ---------------------------------------------------------------------------
429a515125bSLeila Ghaffari   // -- Create CEED vector
430a515125bSLeila Ghaffari   CeedElemRestrictionCreateVector(ceed_data->elem_restr_x, &ceed_data->x_coord,
431a515125bSLeila Ghaffari                                   NULL);
432a515125bSLeila Ghaffari 
433a515125bSLeila Ghaffari   // -- Copy PETSc vector in CEED vector
434a515125bSLeila Ghaffari   Vec               X_loc;
435a515125bSLeila Ghaffari   const PetscScalar *X_loc_array;
436a515125bSLeila Ghaffari   ierr = DMGetCoordinatesLocal(dm, &X_loc); CHKERRQ(ierr);
43705a512bdSLeila Ghaffari   ierr = VecScale(X_loc, problem->dm_scale); CHKERRQ(ierr);
438a515125bSLeila Ghaffari   ierr = VecGetArrayRead(X_loc, &X_loc_array); CHKERRQ(ierr);
439a515125bSLeila Ghaffari   CeedVectorSetArray(ceed_data->x_coord, CEED_MEM_HOST, CEED_COPY_VALUES,
440a515125bSLeila Ghaffari                      (PetscScalar *)X_loc_array);
441a515125bSLeila Ghaffari   ierr = VecRestoreArrayRead(X_loc, &X_loc_array); CHKERRQ(ierr);
442a515125bSLeila Ghaffari 
443a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
444a515125bSLeila Ghaffari   // CEED vectors
445a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
446a515125bSLeila Ghaffari   // -- Create CEED vector for geometric data
447a515125bSLeila Ghaffari   CeedInt  num_qpts_vol;
448a515125bSLeila Ghaffari   PetscInt loc_num_elem_vol;
449a515125bSLeila Ghaffari   CeedBasisGetNumQuadraturePoints(ceed_data->basis_q, &num_qpts_vol);
450a515125bSLeila Ghaffari   CeedElemRestrictionGetNumElements(ceed_data->elem_restr_q, &loc_num_elem_vol);
451a515125bSLeila Ghaffari   CeedVectorCreate(ceed, q_data_size_vol*loc_num_elem_vol*num_qpts_vol,
452a515125bSLeila Ghaffari                    &ceed_data->q_data);
453a515125bSLeila Ghaffari 
454752f40e3SJed Brown   CeedElemRestrictionCreateVector(elem_restr_jd_i, &jac_data, NULL);
455a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
456a515125bSLeila Ghaffari   // CEED Operators
457a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
458a515125bSLeila Ghaffari   // -- Create CEED operator for quadrature data
459a515125bSLeila Ghaffari   CeedOperatorCreate(ceed, ceed_data->qf_setup_vol, NULL, NULL,
460a515125bSLeila Ghaffari                      &ceed_data->op_setup_vol);
461a515125bSLeila Ghaffari   CeedOperatorSetField(ceed_data->op_setup_vol, "dx", ceed_data->elem_restr_x,
462a515125bSLeila Ghaffari                        ceed_data->basis_x, CEED_VECTOR_ACTIVE);
463a515125bSLeila Ghaffari   CeedOperatorSetField(ceed_data->op_setup_vol, "weight",
464139613f2SLeila Ghaffari                        CEED_ELEMRESTRICTION_NONE, ceed_data->basis_x, CEED_VECTOR_NONE);
4653b1e209bSJeremy L Thompson   CeedOperatorSetField(ceed_data->op_setup_vol, "qdata",
466139613f2SLeila Ghaffari                        ceed_data->elem_restr_qd_i, CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE);
467a515125bSLeila Ghaffari 
468a515125bSLeila Ghaffari   // -- Create CEED operator for ICs
469a515125bSLeila Ghaffari   CeedOperatorCreate(ceed, ceed_data->qf_ics, NULL, NULL, &ceed_data->op_ics);
470a515125bSLeila Ghaffari   CeedOperatorSetField(ceed_data->op_ics, "x", ceed_data->elem_restr_x,
471a515125bSLeila Ghaffari                        ceed_data->basis_xc, CEED_VECTOR_ACTIVE);
472a515125bSLeila Ghaffari   CeedOperatorSetField(ceed_data->op_ics, "q0", ceed_data->elem_restr_q,
473a515125bSLeila Ghaffari                        CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE);
47415a3537eSJed Brown   CeedOperatorContextGetFieldLabel(ceed_data->op_ics, "evaluation time",
47515a3537eSJed Brown                                    &user->phys->ics_time_label);
476a515125bSLeila Ghaffari 
477a515125bSLeila Ghaffari   // Create CEED operator for RHS
478a515125bSLeila Ghaffari   if (ceed_data->qf_rhs_vol) {
479a515125bSLeila Ghaffari     CeedOperator op;
480a515125bSLeila Ghaffari     CeedOperatorCreate(ceed, ceed_data->qf_rhs_vol, NULL, NULL, &op);
481a515125bSLeila Ghaffari     CeedOperatorSetField(op, "q", ceed_data->elem_restr_q, ceed_data->basis_q,
482a515125bSLeila Ghaffari                          CEED_VECTOR_ACTIVE);
483752f40e3SJed Brown     CeedOperatorSetField(op, "Grad_q", ceed_data->elem_restr_q, ceed_data->basis_q,
484a515125bSLeila Ghaffari                          CEED_VECTOR_ACTIVE);
4853b1e209bSJeremy L Thompson     CeedOperatorSetField(op, "qdata", ceed_data->elem_restr_qd_i,
486139613f2SLeila Ghaffari                          CEED_BASIS_COLLOCATED, ceed_data->q_data);
487a515125bSLeila Ghaffari     CeedOperatorSetField(op, "x", ceed_data->elem_restr_x, ceed_data->basis_x,
488a515125bSLeila Ghaffari                          ceed_data->x_coord);
489a515125bSLeila Ghaffari     CeedOperatorSetField(op, "v", ceed_data->elem_restr_q, ceed_data->basis_q,
490a515125bSLeila Ghaffari                          CEED_VECTOR_ACTIVE);
491752f40e3SJed Brown     CeedOperatorSetField(op, "Grad_v", ceed_data->elem_restr_q, ceed_data->basis_q,
492a515125bSLeila Ghaffari                          CEED_VECTOR_ACTIVE);
493a515125bSLeila Ghaffari     user->op_rhs_vol = op;
494a515125bSLeila Ghaffari   }
495a515125bSLeila Ghaffari 
496a515125bSLeila Ghaffari   // -- CEED operator for IFunction
497a515125bSLeila Ghaffari   if (ceed_data->qf_ifunction_vol) {
498a515125bSLeila Ghaffari     CeedOperator op;
499a515125bSLeila Ghaffari     CeedOperatorCreate(ceed, ceed_data->qf_ifunction_vol, NULL, NULL, &op);
500a515125bSLeila Ghaffari     CeedOperatorSetField(op, "q", ceed_data->elem_restr_q, ceed_data->basis_q,
501a515125bSLeila Ghaffari                          CEED_VECTOR_ACTIVE);
502752f40e3SJed Brown     CeedOperatorSetField(op, "Grad_q", ceed_data->elem_restr_q, ceed_data->basis_q,
503a515125bSLeila Ghaffari                          CEED_VECTOR_ACTIVE);
5043b1e209bSJeremy L Thompson     CeedOperatorSetField(op, "q dot", ceed_data->elem_restr_q, ceed_data->basis_q,
505a515125bSLeila Ghaffari                          user->q_dot_ceed);
5063b1e209bSJeremy L Thompson     CeedOperatorSetField(op, "qdata", ceed_data->elem_restr_qd_i,
507139613f2SLeila Ghaffari                          CEED_BASIS_COLLOCATED, ceed_data->q_data);
508a515125bSLeila Ghaffari     CeedOperatorSetField(op, "x", ceed_data->elem_restr_x, ceed_data->basis_x,
509a515125bSLeila Ghaffari                          ceed_data->x_coord);
510a515125bSLeila Ghaffari     CeedOperatorSetField(op, "v", ceed_data->elem_restr_q, ceed_data->basis_q,
511a515125bSLeila Ghaffari                          CEED_VECTOR_ACTIVE);
512752f40e3SJed Brown     CeedOperatorSetField(op, "Grad_v", ceed_data->elem_restr_q, ceed_data->basis_q,
513a515125bSLeila Ghaffari                          CEED_VECTOR_ACTIVE);
514752f40e3SJed Brown     CeedOperatorSetField(op, "jac_data", elem_restr_jd_i,
515752f40e3SJed Brown                          CEED_BASIS_COLLOCATED, jac_data);
516752f40e3SJed Brown 
517a515125bSLeila Ghaffari     user->op_ifunction_vol = op;
518a515125bSLeila Ghaffari   }
519a515125bSLeila Ghaffari 
520f0b65372SJed Brown   CeedOperator op_ijacobian_vol = NULL;
521f0b65372SJed Brown   if (qf_ijacobian_vol) {
522f0b65372SJed Brown     CeedOperator op;
523f0b65372SJed Brown     CeedOperatorCreate(ceed, qf_ijacobian_vol, NULL, NULL, &op);
524f0b65372SJed Brown     CeedOperatorSetField(op, "dq", ceed_data->elem_restr_q, ceed_data->basis_q,
525f0b65372SJed Brown                          CEED_VECTOR_ACTIVE);
526f0b65372SJed Brown     CeedOperatorSetField(op, "Grad_dq", ceed_data->elem_restr_q, ceed_data->basis_q,
527f0b65372SJed Brown                          CEED_VECTOR_ACTIVE);
528f0b65372SJed Brown     CeedOperatorSetField(op, "qdata", ceed_data->elem_restr_qd_i,
529f0b65372SJed Brown                          CEED_BASIS_COLLOCATED, ceed_data->q_data);
530f0b65372SJed Brown     CeedOperatorSetField(op, "x", ceed_data->elem_restr_x, ceed_data->basis_x,
531f0b65372SJed Brown                          ceed_data->x_coord);
532f0b65372SJed Brown     CeedOperatorSetField(op, "jac_data", elem_restr_jd_i,
533f0b65372SJed Brown                          CEED_BASIS_COLLOCATED, jac_data);
534f0b65372SJed Brown     CeedOperatorSetField(op, "v", ceed_data->elem_restr_q, ceed_data->basis_q,
535f0b65372SJed Brown                          CEED_VECTOR_ACTIVE);
536f0b65372SJed Brown     CeedOperatorSetField(op, "Grad_v", ceed_data->elem_restr_q, ceed_data->basis_q,
537f0b65372SJed Brown                          CEED_VECTOR_ACTIVE);
538f0b65372SJed Brown     op_ijacobian_vol = op;
539f0b65372SJed Brown     CeedQFunctionDestroy(&qf_ijacobian_vol);
540f0b65372SJed Brown   }
541f0b65372SJed Brown 
542a515125bSLeila Ghaffari   // *****************************************************************************
543a515125bSLeila Ghaffari   // Set up CEED objects for the exterior domain (surface)
544a515125bSLeila Ghaffari   // *****************************************************************************
545a515125bSLeila Ghaffari   CeedInt height  = 1,
546a515125bSLeila Ghaffari           dim_sur = dim - height,
547a515125bSLeila Ghaffari           P_sur   = app_ctx->degree + 1,
548a515125bSLeila Ghaffari           Q_sur   = P_sur + app_ctx->q_extra;
549f0b65372SJed Brown   const CeedInt q_data_size_sur = problem->q_data_size_sur,
550f0b65372SJed Brown                 jac_data_size_sur = problem->jac_data_size_sur;
551a515125bSLeila Ghaffari 
552a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
553a515125bSLeila Ghaffari   // CEED Bases
554a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
555a515125bSLeila Ghaffari   CeedBasisCreateTensorH1Lagrange(ceed, dim_sur, num_comp_q, P_sur, Q_sur,
556a515125bSLeila Ghaffari                                   CEED_GAUSS, &ceed_data->basis_q_sur);
557a515125bSLeila Ghaffari   CeedBasisCreateTensorH1Lagrange(ceed, dim_sur, num_comp_x, 2, Q_sur, CEED_GAUSS,
558a515125bSLeila Ghaffari                                   &ceed_data->basis_x_sur);
559a515125bSLeila Ghaffari 
560a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
561a515125bSLeila Ghaffari   // CEED QFunctions
562a515125bSLeila Ghaffari   // -----------------------------------------------------------------------------
563a515125bSLeila Ghaffari   // -- Create QFunction for quadrature data
5649785fe93SJed Brown   CeedQFunctionCreateInterior(ceed, 1, problem->setup_sur.qfunction,
5659785fe93SJed Brown                               problem->setup_sur.qfunction_loc,
566a515125bSLeila Ghaffari                               &ceed_data->qf_setup_sur);
56715a3537eSJed Brown   if (problem->setup_sur.qfunction_context) {
56815a3537eSJed Brown     CeedQFunctionSetContext(ceed_data->qf_setup_sur,
56915a3537eSJed Brown                             problem->setup_sur.qfunction_context);
57015a3537eSJed Brown     CeedQFunctionContextDestroy(&problem->setup_sur.qfunction_context);
57115a3537eSJed Brown   }
572a515125bSLeila Ghaffari   CeedQFunctionAddInput(ceed_data->qf_setup_sur, "dx", num_comp_x*dim_sur,
573a515125bSLeila Ghaffari                         CEED_EVAL_GRAD);
574a515125bSLeila Ghaffari   CeedQFunctionAddInput(ceed_data->qf_setup_sur, "weight", 1, CEED_EVAL_WEIGHT);
5753b1e209bSJeremy L Thompson   CeedQFunctionAddOutput(ceed_data->qf_setup_sur, "surface qdata",
576002797a3SLeila Ghaffari                          q_data_size_sur, CEED_EVAL_NONE);
577a515125bSLeila Ghaffari 
578002797a3SLeila Ghaffari   // -- Creat QFunction for inflow boundaries
5799785fe93SJed Brown   if (problem->apply_inflow.qfunction) {
5809785fe93SJed Brown     CeedQFunctionCreateInterior(ceed, 1, problem->apply_inflow.qfunction,
5819785fe93SJed Brown                                 problem->apply_inflow.qfunction_loc, &ceed_data->qf_apply_inflow);
58215a3537eSJed Brown     CeedQFunctionSetContext(ceed_data->qf_apply_inflow,
58315a3537eSJed Brown                             problem->apply_inflow.qfunction_context);
58415a3537eSJed Brown     CeedQFunctionContextDestroy(&problem->apply_inflow.qfunction_context);
585002797a3SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_apply_inflow, "q", num_comp_q,
586a515125bSLeila Ghaffari                           CEED_EVAL_INTERP);
587002797a3SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_apply_inflow, "surface qdata",
588002797a3SLeila Ghaffari                           q_data_size_sur, CEED_EVAL_NONE);
589002797a3SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_apply_inflow, "x", num_comp_x,
590a515125bSLeila Ghaffari                           CEED_EVAL_INTERP);
591002797a3SLeila Ghaffari     CeedQFunctionAddOutput(ceed_data->qf_apply_inflow, "v", num_comp_q,
592002797a3SLeila Ghaffari                            CEED_EVAL_INTERP);
593002797a3SLeila Ghaffari   }
594f0b65372SJed Brown   if (problem->apply_inflow_jacobian.qfunction) {
595f0b65372SJed Brown     CeedQFunctionCreateInterior(ceed, 1, problem->apply_inflow_jacobian.qfunction,
596f0b65372SJed Brown                                 problem->apply_inflow_jacobian.qfunction_loc,
597f0b65372SJed Brown                                 &ceed_data->qf_apply_inflow_jacobian);
598f0b65372SJed Brown     CeedQFunctionSetContext(ceed_data->qf_apply_inflow_jacobian,
599f0b65372SJed Brown                             problem->apply_inflow_jacobian.qfunction_context);
600f0b65372SJed Brown     CeedQFunctionContextDestroy(&problem->apply_inflow_jacobian.qfunction_context);
601f0b65372SJed Brown     CeedQFunctionAddInput(ceed_data->qf_apply_inflow_jacobian, "dq", num_comp_q,
602f0b65372SJed Brown                           CEED_EVAL_INTERP);
603f0b65372SJed Brown     CeedQFunctionAddInput(ceed_data->qf_apply_inflow_jacobian, "surface qdata",
604f0b65372SJed Brown                           q_data_size_sur, CEED_EVAL_NONE);
605f0b65372SJed Brown     CeedQFunctionAddInput(ceed_data->qf_apply_inflow_jacobian, "x", num_comp_x,
606f0b65372SJed Brown                           CEED_EVAL_INTERP);
607f0b65372SJed Brown     CeedQFunctionAddOutput(ceed_data->qf_apply_inflow_jacobian, "v", num_comp_q,
608f0b65372SJed Brown                            CEED_EVAL_INTERP);
609f0b65372SJed Brown   }
610002797a3SLeila Ghaffari 
611002797a3SLeila Ghaffari   // -- Creat QFunction for outflow boundaries
6129785fe93SJed Brown   if (problem->apply_outflow.qfunction) {
6139785fe93SJed Brown     CeedQFunctionCreateInterior(ceed, 1, problem->apply_outflow.qfunction,
6149785fe93SJed Brown                                 problem->apply_outflow.qfunction_loc, &ceed_data->qf_apply_outflow);
61515a3537eSJed Brown     CeedQFunctionSetContext(ceed_data->qf_apply_outflow,
61615a3537eSJed Brown                             problem->apply_outflow.qfunction_context);
61715a3537eSJed Brown     CeedQFunctionContextDestroy(&problem->apply_outflow.qfunction_context);
618002797a3SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_apply_outflow, "q", num_comp_q,
619002797a3SLeila Ghaffari                           CEED_EVAL_INTERP);
620002797a3SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_apply_outflow, "surface qdata",
621002797a3SLeila Ghaffari                           q_data_size_sur, CEED_EVAL_NONE);
622002797a3SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_apply_outflow, "x", num_comp_x,
623002797a3SLeila Ghaffari                           CEED_EVAL_INTERP);
624002797a3SLeila Ghaffari     CeedQFunctionAddOutput(ceed_data->qf_apply_outflow, "v", num_comp_q,
625a515125bSLeila Ghaffari                            CEED_EVAL_INTERP);
6262556a851SJed Brown     if (jac_data_size_sur)
627f0b65372SJed Brown       CeedQFunctionAddOutput(ceed_data->qf_apply_outflow, "surface jacobian data",
628f0b65372SJed Brown                              jac_data_size_sur,
629f0b65372SJed Brown                              CEED_EVAL_NONE);
630f0b65372SJed Brown   }
631f0b65372SJed Brown   if (problem->apply_outflow_jacobian.qfunction) {
632f0b65372SJed Brown     CeedQFunctionCreateInterior(ceed, 1, problem->apply_outflow_jacobian.qfunction,
633f0b65372SJed Brown                                 problem->apply_outflow_jacobian.qfunction_loc,
634f0b65372SJed Brown                                 &ceed_data->qf_apply_outflow_jacobian);
635f0b65372SJed Brown     CeedQFunctionSetContext(ceed_data->qf_apply_outflow_jacobian,
636f0b65372SJed Brown                             problem->apply_outflow_jacobian.qfunction_context);
637f0b65372SJed Brown     CeedQFunctionContextDestroy(&problem->apply_outflow_jacobian.qfunction_context);
638f0b65372SJed Brown     CeedQFunctionAddInput(ceed_data->qf_apply_outflow_jacobian, "dq", num_comp_q,
639f0b65372SJed Brown                           CEED_EVAL_INTERP);
640f0b65372SJed Brown     CeedQFunctionAddInput(ceed_data->qf_apply_outflow_jacobian, "surface qdata",
641f0b65372SJed Brown                           q_data_size_sur, CEED_EVAL_NONE);
642f0b65372SJed Brown     CeedQFunctionAddInput(ceed_data->qf_apply_outflow_jacobian,
643f0b65372SJed Brown                           "surface jacobian data",
644f0b65372SJed Brown                           jac_data_size_sur, CEED_EVAL_NONE);
645f0b65372SJed Brown     CeedQFunctionAddOutput(ceed_data->qf_apply_outflow_jacobian, "v", num_comp_q,
646f0b65372SJed Brown                            CEED_EVAL_INTERP);
647a515125bSLeila Ghaffari   }
648a515125bSLeila Ghaffari 
649a515125bSLeila Ghaffari   // *****************************************************************************
650a515125bSLeila Ghaffari   // CEED Operator Apply
651a515125bSLeila Ghaffari   // *****************************************************************************
652a515125bSLeila Ghaffari   // -- Apply CEED Operator for the geometric data
653a515125bSLeila Ghaffari   CeedOperatorApply(ceed_data->op_setup_vol, ceed_data->x_coord,
654a515125bSLeila Ghaffari                     ceed_data->q_data, CEED_REQUEST_IMMEDIATE);
655a515125bSLeila Ghaffari 
656a515125bSLeila Ghaffari   // -- Create and apply CEED Composite Operator for the entire domain
657a515125bSLeila Ghaffari   if (!user->phys->implicit) { // RHS
658a515125bSLeila Ghaffari     ierr = CreateOperatorForDomain(ceed, dm, bc, ceed_data, user->phys,
659f0b65372SJed Brown                                    user->op_rhs_vol, NULL, height, P_sur, Q_sur,
660f0b65372SJed Brown                                    q_data_size_sur, 0,
661f0b65372SJed Brown                                    &user->op_rhs, NULL); CHKERRQ(ierr);
662a515125bSLeila Ghaffari   } else { // IFunction
663a515125bSLeila Ghaffari     ierr = CreateOperatorForDomain(ceed, dm, bc, ceed_data, user->phys,
664f0b65372SJed Brown                                    user->op_ifunction_vol, op_ijacobian_vol,
665f0b65372SJed Brown                                    height, P_sur, Q_sur,
666f0b65372SJed Brown                                    q_data_size_sur, jac_data_size_sur,
667f0b65372SJed Brown                                    &user->op_ifunction,
668f0b65372SJed Brown                                    op_ijacobian_vol ? &user->op_ijacobian : NULL); CHKERRQ(ierr);
669f0b65372SJed Brown     if (user->op_ijacobian) {
670f0b65372SJed Brown       CeedOperatorContextGetFieldLabel(user->op_ijacobian, "ijacobian time shift",
671f0b65372SJed Brown                                        &user->phys->ijacobian_time_shift_label);
672f0b65372SJed Brown     }
673f0b65372SJed Brown 
674a515125bSLeila Ghaffari   }
675752f40e3SJed Brown   CeedElemRestrictionDestroy(&elem_restr_jd_i);
676*e22e0f1cSLeila Ghaffari   CeedOperatorDestroy(&op_ijacobian_vol);
677752f40e3SJed Brown   CeedVectorDestroy(&jac_data);
678a515125bSLeila Ghaffari   PetscFunctionReturn(0);
679a515125bSLeila Ghaffari }
680