1bcb2dfaeSJed Brown# Changes/Release Notes 2bcb2dfaeSJed Brown 3bcb2dfaeSJed BrownOn this page we provide a summary of the main API changes, new features and examples 4bcb2dfaeSJed Brownfor each release of libCEED. 5bcb2dfaeSJed Brown 6bcb2dfaeSJed Brown(main)= 7bcb2dfaeSJed Brown 8bcb2dfaeSJed Brown## Current `main` branch 9bcb2dfaeSJed Brown 107e7773b5SJeremy L Thompson### Interface changes 117e7773b5SJeremy L Thompson 12*667e613fSJeremy L Thompson(v0-10)= 13*667e613fSJeremy L Thompson 14*667e613fSJeremy L Thompson## v0.10 (Mar 16, 2022) 15*667e613fSJeremy L Thompson 16*667e613fSJeremy L Thompson### Interface changes 17*667e613fSJeremy L Thompson 187e7773b5SJeremy L Thompson- Update {c:func}`CeedQFunctionGetFields` and {c:func}`CeedOperatorGetFields` to include number of fields. 19ce4822f6SJeremy L Thompson- Promote to the public API: QFunction and Operator field objects, `CeedQFunctionField` and `CeedOperatorField`, and associated getters, {c:func}`CeedQFunctionGetFields`; {c:func}`CeedQFunctionFieldGetName`; {c:func}`CeedQFunctionFieldGetSize`; {c:func}`CeedQFunctionFieldGetEvalMode`; {c:func}`CeedOperatorGetFields`; {c:func}`CeedOperatorFieldGetElemRestriction`; {c:func}`CeedOperatorFieldGetBasis`; and {c:func}`CeedOperatorFieldGetVector`. 20f04ea552SJeremy L Thompson- Clarify and document conditions where `CeedQFunction` and `CeedOperator` become immutable and no further fields or suboperators can be added. 2170a7ffb3SJeremy L Thompson- Add {c:func}`CeedOperatorLinearAssembleQFunctionBuildOrUpdate` to reduce object creation overhead in assembly of CeedOperator preconditioning ingredients. 224db537f9SJeremy L Thompson- Promote {c:func}`CeedOperatorCheckReady`to the public API to facilitate interactive interfaces. 23dcc1e3ecSJeremy L Thompson- Warning added when compiling OCCA backend to alert users that this backend is experimental. 249a1d3511SJeremy L Thompson- `ceed-backend.h`, `ceed-hash.h`, and `ceed-khash.h` removed. Users should use `ceed/backend.h`, `ceed/hash.h`, and `ceed/khash.h`. 2543e1b16fSJeremy L Thompson- Added {c:func}`CeedQFunctionGetKernelName`; refactored {c:func}`CeedQFunctionGetSourcePath` to exclude function kernel name. 269c774eddSJeremy L Thompson- Clarify documentation for {c:func}`CeedVectorTakeArray`; this function will error if {c:func}`CeedVectorSetArray` with `copy_mode == CEED_USE_POINTER` was not previously called for the corresponding `CeedMemType`. 279c774eddSJeremy L Thompson- Added {c:func}`CeedVectorGetArrayWrite` that allows access to uninitalized arrays; require initalized data for {c:func}`CeedVectorGetArray`. 28c38440baSJed Brown- Added {c:func}`CeedQFunctionContextRegisterDouble` and {c:func}`CeedQFunctionContextRegisterInt32` with {c:func}`CeedQFunctionContextSetDouble` and {c:func}`CeedQFunctionContextSetInt32` to facilitate easy updating of {c:struct}`CeedQFunctionContext` data by user defined field names. 29cdf32b93SJeremy L Thompson- Added {c:func}`CeedQFunctionContextGetFieldDescriptions` to retreive user defined descriptions of fields that are registered with `CeedQFunctionContextRegister*`. 307a06ec9fSJeremy L Thompson- Renamed `CeedElemTopology` entries for clearer namespacing between libCEED enums. 31f4f98f9dSJeremy L Thompson- Added type `CeedSize` equivalent to `ptrdiff_t` for array sizes in {c:func}`CeedVectorCreate`, {c:func}`CeedVectorGetLength`, `CeedElemRestrictionCreate*`, {c:func}`CeedElemRestrictionGetLVectorSize`, and {c:func}`CeedOperatorLinearAssembleSymbolic`. This is a breaking change. 328b919e6bSJeremy L Thompson- Added {c:func}`CeedOperatorSetQFunctionUpdated` to facilitate QFunction data re-use between operators sharing the same quadrature space, such as in a multigrid hierarchy. 33c9366a6bSJeremy L Thompson- Added {c:func}`CeedOperatorGetActiveVectorLengths` to get shape of CeedOperator. 347e7773b5SJeremy L Thompson 35f479eb23SJeremy L Thompson### New features 36f479eb23SJeremy L Thompson 37f479eb23SJeremy L Thompson- `CeedScalar` can now be set as `float` or `double` at compile time. 3830601ac0SJeremy L Thompson- Added JiT utilities in `ceed/jit-tools.h` to reduce duplicated code in GPU backends. 39fb3c7d02SJeremy L Thompson- Added support for JiT of QFunctions with `#include "relative/path/local-file.h"` statements for additional local files. Note that files included with `""` are searched relative to the current file first, then by compiler paths (as with `<>` includes). To use this feature, one should adhere to relative paths only, not compiler flags like `-I`, which the JiT will not be aware of. 4023dfbf5bSJeremy L Thompson- Remove need to guard library headers in QFunction source for code generation backends. 413f21f6b1SJeremy L Thompson- `CeedDebugEnv()` macro created to provide debugging outputs when Ceed context is not present. 42f7e22acaSJeremy L Thompson- Added {c:func}`CeedStringAllocCopy` to reduce repeated code for copying strings internally. 433451974fSJeremy L Thompson- Added {c:func}`CeedPathConcatenate` to facilitate loading kernel source files with a path relative to the current file. 447a06ec9fSJeremy L Thompson- Added support for non-tensor H(div) elements, to include CPU backend implementations and {c:func}`CeedBasisCreateHdiv` convenience constructor. 45d34e270fSJeremy L Thompson- Added {c:func}`CeedQFunctionSetContextWritable` and read-only access to `CeedQFunctionContext` data as an optional feature to improve GPU performance. By default, calling the `CeedQFunctionUser` during {c:func}`CeedQFunctionApply` is assumed to write into the `CeedQFunctionContext` data, consistent with the previous behavior. Note that if a user asserts that their `CeedQFunctionUser` does not write into the `CeedQFunctionContext` data, they are responsible for the validity of this assertion. 4659ad764aSnbeams- Added support for element matrix assembly in GPU backends. 47f479eb23SJeremy L Thompson 48bcb2dfaeSJed Brown### Maintainability 49bcb2dfaeSJed Brown 50bcb2dfaeSJed Brown- Refactored preconditioner support internally to facilitate future development and improve GPU completeness/test coverage. 51db52d626SJeremy L Thompson- `Include-what-you-use` makefile target added as `make iwyu`. 52bf4cb664SJeremy L Thompson- Create backend constant `CEED_FIELD_MAX` to reduce magic numbers in codebase. 533451974fSJeremy L Thompson- Put GPU JiTed kernel source code into separate files. 54f9996dfdSJeremy L Thompson- Dropped legacy version support in PETSc based examples to better utilize PETSc DMPlex and Mat updates to support libCEED; current minimum PETSc version for the examples is v3.17. 55bcb2dfaeSJed Brown 56bcb2dfaeSJed Brown(v0-9)= 57bcb2dfaeSJed Brown 58bcb2dfaeSJed Brown## v0.9 (Jul 6, 2021) 59bcb2dfaeSJed Brown 60bcb2dfaeSJed Brown### Interface changes 61bcb2dfaeSJed Brown 62bcb2dfaeSJed Brown- Minor modification in error handling macro to silence pedantic warnings when compiling with Clang, but no functional impact. 63bcb2dfaeSJed Brown 64bcb2dfaeSJed Brown### New features 65bcb2dfaeSJed Brown 66bcb2dfaeSJed Brown- Add {c:func}`CeedVectorAXPY` and {c:func}`CeedVectorPointwiseMult` as a convenience for stand-alone testing and internal use. 67bcb2dfaeSJed Brown- Add `CEED_QFUNCTION_HELPER` macro to properly annotate QFunction helper functions for code generation backends. 68bcb2dfaeSJed Brown- Add `CeedPragmaOptimizeOff` macro for code that is sensitive to floating point errors from fast math optimizations. 69bcb2dfaeSJed Brown- Rust support: split `libceed-sys` crate out of `libceed` and [publish both on crates.io](https://crates.io/crates/libceed). 70bcb2dfaeSJed Brown 71bcb2dfaeSJed Brown### Performance improvements 72bcb2dfaeSJed Brown 73bcb2dfaeSJed Brown### Examples 74bcb2dfaeSJed Brown 75bcb2dfaeSJed Brown- Solid mechanics mini-app updated to explore the performance impacts of various formulations in the initial and current configurations. 76bcb2dfaeSJed Brown- Fluid mechanics example adds GPU support and improves modularity. 77bcb2dfaeSJed Brown 78bcb2dfaeSJed Brown### Deprecated backends 79bcb2dfaeSJed Brown 80bcb2dfaeSJed Brown- The `/cpu/self/tmpl` and `/cpu/self/tmpl/sub` backends have been removed. These backends were intially added to test the backend inheritance mechanism, but this mechanism is now widely used and tested in multiple backends. 81bcb2dfaeSJed Brown 82bcb2dfaeSJed Brown(v0-8)= 83bcb2dfaeSJed Brown 84bcb2dfaeSJed Brown## v0.8 (Mar 31, 2021) 85bcb2dfaeSJed Brown 86bcb2dfaeSJed Brown### Interface changes 87bcb2dfaeSJed Brown 88bcb2dfaeSJed Brown- Error handling improved to include enumerated error codes for C interface return values. 89bcb2dfaeSJed Brown- Installed headers that will follow semantic versioning were moved to {code}`include/ceed` directory. These headers have been renamed from {code}`ceed-*.h` to {code}`ceed/*.h`. Placeholder headers with the old naming schema are currently provided, but these headers will be removed in the libCEED v0.9 release. 90bcb2dfaeSJed Brown 91bcb2dfaeSJed Brown### New features 92bcb2dfaeSJed Brown 93bcb2dfaeSJed Brown- Julia and Rust interfaces added, providing a nearly 1-1 correspondence with the C interface, plus some convenience features. 94bcb2dfaeSJed Brown- Static libraries can be built with `make STATIC=1` and the pkg-config file is installed accordingly. 95bcb2dfaeSJed Brown- Add {c:func}`CeedOperatorLinearAssembleSymbolic` and {c:func}`CeedOperatorLinearAssemble` to support full assembly of libCEED operators. 96bcb2dfaeSJed Brown 97bcb2dfaeSJed Brown### Performance improvements 98bcb2dfaeSJed Brown 99bcb2dfaeSJed Brown- New HIP MAGMA backends for hipMAGMA library users: `/gpu/hip/magma` and `/gpu/hip/magma/det`. 100bcb2dfaeSJed Brown- New HIP backends for improved tensor basis performance: `/gpu/hip/shared` and `/gpu/hip/gen`. 101bcb2dfaeSJed Brown 102bcb2dfaeSJed Brown### Examples 103bcb2dfaeSJed Brown 104bcb2dfaeSJed Brown- {ref}`example-petsc-elasticity` example updated with traction boundary conditions and improved Dirichlet boundary conditions. 105bcb2dfaeSJed Brown- {ref}`example-petsc-elasticity` example updated with Neo-Hookean hyperelasticity in current configuration as well as improved Neo-Hookean hyperelasticity exploring storage vs computation tradeoffs. 106bcb2dfaeSJed Brown- {ref}`example-petsc-navier-stokes` example updated with isentropic traveling vortex test case, an analytical solution to the Euler equations that is useful for testing boundary conditions, discretization stability, and order of accuracy. 107bcb2dfaeSJed Brown- {ref}`example-petsc-navier-stokes` example updated with support for performing convergence study and plotting order of convergence by polynomial degree. 108bcb2dfaeSJed Brown 109bcb2dfaeSJed Brown(v0-7)= 110bcb2dfaeSJed Brown 111bcb2dfaeSJed Brown## v0.7 (Sep 29, 2020) 112bcb2dfaeSJed Brown 113bcb2dfaeSJed Brown### Interface changes 114bcb2dfaeSJed Brown 115bcb2dfaeSJed Brown- Replace limited {code}`CeedInterlaceMode` with more flexible component stride {code}`compstride` in {code}`CeedElemRestriction` constructors. 116bcb2dfaeSJed Brown As a result, the {code}`indices` parameter has been replaced with {code}`offsets` and the {code}`nnodes` parameter has been replaced with {code}`lsize`. 117bcb2dfaeSJed Brown These changes improve support for mixed finite element methods. 118bcb2dfaeSJed Brown- Replace various uses of {code}`Ceed*Get*Status` with {code}`Ceed*Is*` in the backend API to match common nomenclature. 119bcb2dfaeSJed Brown- Replace {code}`CeedOperatorAssembleLinearDiagonal` with {c:func}`CeedOperatorLinearAssembleDiagonal` for clarity. 120bcb2dfaeSJed Brown- Linear Operators can be assembled as point-block diagonal matrices with {c:func}`CeedOperatorLinearAssemblePointBlockDiagonal`, provided in row-major form in a {code}`ncomp` by {code}`ncomp` block per node. 121bcb2dfaeSJed Brown- Diagonal assemble interface changed to accept a {ref}`CeedVector` instead of a pointer to a {ref}`CeedVector` to reduce memory movement when interfacing with calling code. 122bcb2dfaeSJed Brown- Added {c:func}`CeedOperatorLinearAssembleAddDiagonal` and {c:func}`CeedOperatorLinearAssembleAddPointBlockDiagonal` for improved future integration with codes such as MFEM that compose the action of {ref}`CeedOperator`s external to libCEED. 123bcb2dfaeSJed Brown- Added {c:func}`CeedVectorTakeAray` to sync and remove libCEED read/write access to an allocated array and pass ownership of the array to the caller. 124bcb2dfaeSJed Brown This function is recommended over {c:func}`CeedVectorSyncArray` when the {code}`CeedVector` has an array owned by the caller that was set by {c:func}`CeedVectorSetArray`. 125bcb2dfaeSJed Brown- Added {code}`CeedQFunctionContext` object to manage user QFunction context data and reduce copies between device and host memory. 126bcb2dfaeSJed Brown- Added {c:func}`CeedOperatorMultigridLevelCreate`, {c:func}`CeedOperatorMultigridLevelCreateTensorH1`, and {c:func}`CeedOperatorMultigridLevelCreateH1` to facilitate creation of multigrid prolongation, restriction, and coarse grid operators using a common quadrature space. 127bcb2dfaeSJed Brown 128bcb2dfaeSJed Brown### New features 129bcb2dfaeSJed Brown 130bcb2dfaeSJed Brown- New HIP backend: `/gpu/hip/ref`. 131bcb2dfaeSJed Brown- CeedQFunction support for user `CUfunction`s in some backends 132bcb2dfaeSJed Brown 133bcb2dfaeSJed Brown### Performance improvements 134bcb2dfaeSJed Brown 135bcb2dfaeSJed Brown- OCCA backend rebuilt to facilitate future performance enhancements. 136bcb2dfaeSJed Brown- Petsc BPs suite improved to reduce noise due to multiple calls to {code}`mpiexec`. 137bcb2dfaeSJed Brown 138bcb2dfaeSJed Brown### Examples 139bcb2dfaeSJed Brown 140bcb2dfaeSJed Brown- {ref}`example-petsc-elasticity` example updated with strain energy computation and more flexible boundary conditions. 141bcb2dfaeSJed Brown 142bcb2dfaeSJed Brown### Deprecated backends 143bcb2dfaeSJed Brown 144bcb2dfaeSJed Brown- The `/gpu/cuda/reg` backend has been removed, with its core features moved into `/gpu/cuda/ref` and `/gpu/cuda/shared`. 145bcb2dfaeSJed Brown 146bcb2dfaeSJed Brown(v0-6)= 147bcb2dfaeSJed Brown 148bcb2dfaeSJed Brown## v0.6 (Mar 29, 2020) 149bcb2dfaeSJed Brown 150bcb2dfaeSJed BrownlibCEED v0.6 contains numerous new features and examples, as well as expanded 15113964f07SJed Browndocumentation in [this new website](https://libceed.org). 152bcb2dfaeSJed Brown 153bcb2dfaeSJed Brown### New features 154bcb2dfaeSJed Brown 155bcb2dfaeSJed Brown- New Python interface using [CFFI](https://cffi.readthedocs.io/) provides a nearly 156bcb2dfaeSJed Brown 1-1 correspondence with the C interface, plus some convenience features. For instance, 157bcb2dfaeSJed Brown data stored in the {cpp:type}`CeedVector` structure are available without copy as 158bcb2dfaeSJed Brown {py:class}`numpy.ndarray`. Short tutorials are provided in 159bcb2dfaeSJed Brown [Binder](https://mybinder.org/v2/gh/CEED/libCEED/main?urlpath=lab/tree/examples/tutorials/). 160bcb2dfaeSJed Brown- Linear QFunctions can be assembled as block-diagonal matrices (per quadrature point, 161bcb2dfaeSJed Brown {c:func}`CeedOperatorAssembleLinearQFunction`) or to evaluate the diagonal 162bcb2dfaeSJed Brown ({c:func}`CeedOperatorAssembleLinearDiagonal`). These operations are useful for 163bcb2dfaeSJed Brown preconditioning ingredients and are used in the libCEED's multigrid examples. 164bcb2dfaeSJed Brown- The inverse of separable operators can be obtained using 165bcb2dfaeSJed Brown {c:func}`CeedOperatorCreateFDMElementInverse` and applied with 166bcb2dfaeSJed Brown {c:func}`CeedOperatorApply`. This is a useful preconditioning ingredient, 167bcb2dfaeSJed Brown especially for Laplacians and related operators. 168bcb2dfaeSJed Brown- New functions: {c:func}`CeedVectorNorm`, {c:func}`CeedOperatorApplyAdd`, 169bcb2dfaeSJed Brown {c:func}`CeedQFunctionView`, {c:func}`CeedOperatorView`. 170bcb2dfaeSJed Brown- Make public accessors for various attributes to facilitate writing composable code. 171bcb2dfaeSJed Brown- New backend: `/cpu/self/memcheck/serial`. 172bcb2dfaeSJed Brown- QFunctions using variable-length array (VLA) pointer constructs can be used with CUDA 173bcb2dfaeSJed Brown backends. (Single source is coming soon for OCCA backends.) 174bcb2dfaeSJed Brown- Fix some missing edge cases in CUDA backend. 175bcb2dfaeSJed Brown 176bcb2dfaeSJed Brown### Performance Improvements 177bcb2dfaeSJed Brown 178bcb2dfaeSJed Brown- MAGMA backend performance optimization and non-tensor bases. 179bcb2dfaeSJed Brown- No-copy optimization in {c:func}`CeedOperatorApply`. 180bcb2dfaeSJed Brown 181bcb2dfaeSJed Brown### Interface changes 182bcb2dfaeSJed Brown 183bcb2dfaeSJed Brown- Replace {code}`CeedElemRestrictionCreateIdentity` and 184bcb2dfaeSJed Brown {code}`CeedElemRestrictionCreateBlocked` with more flexible 185bcb2dfaeSJed Brown {c:func}`CeedElemRestrictionCreateStrided` and 186bcb2dfaeSJed Brown {c:func}`CeedElemRestrictionCreateBlockedStrided`. 187bcb2dfaeSJed Brown- Add arguments to {c:func}`CeedQFunctionCreateIdentity`. 188bcb2dfaeSJed Brown- Replace ambiguous uses of {cpp:enum}`CeedTransposeMode` for L-vector identification 189bcb2dfaeSJed Brown with {cpp:enum}`CeedInterlaceMode`. This is now an attribute of the 190bcb2dfaeSJed Brown {cpp:type}`CeedElemRestriction` (see {c:func}`CeedElemRestrictionCreate`) and no 191bcb2dfaeSJed Brown longer passed as `lmode` arguments to {c:func}`CeedOperatorSetField` and 192bcb2dfaeSJed Brown {c:func}`CeedElemRestrictionApply`. 193bcb2dfaeSJed Brown 194bcb2dfaeSJed Brown### Examples 195bcb2dfaeSJed Brown 196bcb2dfaeSJed BrownlibCEED-0.6 contains greatly expanded examples with {ref}`new documentation <Examples>`. 197bcb2dfaeSJed BrownNotable additions include: 198bcb2dfaeSJed Brown 199bcb2dfaeSJed Brown- Standalone {ref}`ex2-surface` ({file}`examples/ceed/ex2-surface`): compute the area of 200bcb2dfaeSJed Brown a domain in 1, 2, and 3 dimensions by applying a Laplacian. 201bcb2dfaeSJed Brown 202bcb2dfaeSJed Brown- PETSc {ref}`example-petsc-area` ({file}`examples/petsc/area.c`): computes surface area 203bcb2dfaeSJed Brown of domains (like the cube and sphere) by direct integration on a surface mesh; 204bcb2dfaeSJed Brown demonstrates geometric dimension different from topological dimension. 205bcb2dfaeSJed Brown 206bcb2dfaeSJed Brown- PETSc {ref}`example-petsc-bps`: 207bcb2dfaeSJed Brown 208bcb2dfaeSJed Brown - {file}`examples/petsc/bpsraw.c` (formerly `bps.c`): transparent CUDA support. 209bcb2dfaeSJed Brown - {file}`examples/petsc/bps.c` (formerly `bpsdmplex.c`): performance improvements 210bcb2dfaeSJed Brown and transparent CUDA support. 211bcb2dfaeSJed Brown - {ref}`example-petsc-bps-sphere` ({file}`examples/petsc/bpssphere.c`): 212bcb2dfaeSJed Brown generalizations of all CEED BPs to the surface of the sphere; demonstrates geometric 213bcb2dfaeSJed Brown dimension different from topological dimension. 214bcb2dfaeSJed Brown 215bcb2dfaeSJed Brown- {ref}`example-petsc-multigrid` ({file}`examples/petsc/multigrid.c`): new p-multigrid 216bcb2dfaeSJed Brown solver with algebraic multigrid coarse solve. 217bcb2dfaeSJed Brown 218bcb2dfaeSJed Brown- {ref}`example-petsc-navier-stokes` ({file}`examples/fluids/navierstokes.c`; formerly 219bcb2dfaeSJed Brown `examples/navier-stokes`): unstructured grid support (using PETSc's `DMPlex`), 220bcb2dfaeSJed Brown implicit time integration, SU/SUPG stabilization, free-slip boundary conditions, and 221bcb2dfaeSJed Brown quasi-2D computational domain support. 222bcb2dfaeSJed Brown 223bcb2dfaeSJed Brown- {ref}`example-petsc-elasticity` ({file}`examples/solids/elasticity.c`): new solver for 224bcb2dfaeSJed Brown linear elasticity, small-strain hyperelasticity, and globalized finite-strain 225bcb2dfaeSJed Brown hyperelasticity using p-multigrid with algebraic multigrid coarse solve. 226bcb2dfaeSJed Brown 227bcb2dfaeSJed Brown(v0-5)= 228bcb2dfaeSJed Brown 229bcb2dfaeSJed Brown## v0.5 (Sep 18, 2019) 230bcb2dfaeSJed Brown 231bcb2dfaeSJed BrownFor this release, several improvements were made. Two new CUDA backends were added to 232bcb2dfaeSJed Brownthe family of backends, of which, the new `cuda-gen` backend achieves state-of-the-art 233bcb2dfaeSJed Brownperformance using single-source {ref}`CeedQFunction`. From this release, users 234bcb2dfaeSJed Browncan define Q-Functions in a single source code independently of the targeted backend 235bcb2dfaeSJed Brownwith the aid of a new macro `CEED QFUNCTION` to support JIT (Just-In-Time) and CPU 236bcb2dfaeSJed Browncompilation of the user provided {ref}`CeedQFunction` code. To allow a unified 237bcb2dfaeSJed Browndeclaration, the {ref}`CeedQFunction` API has undergone a slight change: 238bcb2dfaeSJed Brownthe `QFunctionField` parameter `ncomp` has been changed to `size`. This change 239bcb2dfaeSJed Brownrequires setting the previous value of `ncomp` to `ncomp*dim` when adding a 240bcb2dfaeSJed Brown`QFunctionField` with eval mode `CEED EVAL GRAD`. 241bcb2dfaeSJed Brown 242bcb2dfaeSJed BrownAdditionally, new CPU backends 243bcb2dfaeSJed Brownwere included in this release, such as the `/cpu/self/opt/*` backends (which are 244bcb2dfaeSJed Brownwritten in pure C and use partial **E-vectors** to improve performance) and the 245bcb2dfaeSJed Brown`/cpu/self/ref/memcheck` backend (which relies upon the 246bcb2dfaeSJed Brown[Valgrind](http://valgrind.org/) Memcheck tool to help verify that user 247bcb2dfaeSJed Brown{ref}`CeedQFunction` have no undefined values). 248bcb2dfaeSJed BrownThis release also included various performance improvements, bug fixes, new examples, 249bcb2dfaeSJed Brownand improved tests. Among these improvements, vectorized instructions for 250bcb2dfaeSJed Brown{ref}`CeedQFunction` code compiled for CPU were enhanced by using `CeedPragmaSIMD` 251bcb2dfaeSJed Browninstead of `CeedPragmaOMP`, implementation of a {ref}`CeedQFunction` gallery and 252bcb2dfaeSJed Brownidentity Q-Functions were introduced, and the PETSc benchmark problems were expanded 253bcb2dfaeSJed Brownto include unstructured meshes handling were. For this expansion, the prior version of 254bcb2dfaeSJed Brownthe PETSc BPs, which only included data associated with structured geometries, were 255bcb2dfaeSJed Brownrenamed `bpsraw`, and the new version of the BPs, which can handle data associated 256bcb2dfaeSJed Brownwith any unstructured geometry, were called `bps`. Additionally, other benchmark 257bcb2dfaeSJed Brownproblems, namely BP2 and BP4 (the vector-valued versions of BP1 and BP3, respectively), 258bcb2dfaeSJed Brownand BP5 and BP6 (the collocated versions---for which the quadrature points are the same 259bcb2dfaeSJed Brownas the Gauss Lobatto nodes---of BP3 and BP4 respectively) were added to the PETSc 260bcb2dfaeSJed Brownexamples. Furthermoew, another standalone libCEED example, called `ex2`, which 261bcb2dfaeSJed Browncomputes the surface area of a given mesh was added to this release. 262bcb2dfaeSJed Brown 263bcb2dfaeSJed BrownBackends available in this release: 264bcb2dfaeSJed Brown 26568e843eeSJed Brown| CEED resource (`-ceed`) | Backend | 26668e843eeSJed Brown|--------------------------|-----------------------------------------------------| 26768e843eeSJed Brown| `/cpu/self/ref/serial` | Serial reference implementation | 26868e843eeSJed Brown| `/cpu/self/ref/blocked` | Blocked reference implementation | 26968e843eeSJed Brown| `/cpu/self/ref/memcheck` | Memcheck backend, undefined value checks | 27068e843eeSJed Brown| `/cpu/self/opt/serial` | Serial optimized C implementation | 27168e843eeSJed Brown| `/cpu/self/opt/blocked` | Blocked optimized C implementation | 27268e843eeSJed Brown| `/cpu/self/avx/serial` | Serial AVX implementation | 27368e843eeSJed Brown| `/cpu/self/avx/blocked` | Blocked AVX implementation | 27468e843eeSJed Brown| `/cpu/self/xsmm/serial` | Serial LIBXSMM implementation | 27568e843eeSJed Brown| `/cpu/self/xsmm/blocked` | Blocked LIBXSMM implementation | 27668e843eeSJed Brown| `/cpu/occa` | Serial OCCA kernels | 27768e843eeSJed Brown| `/gpu/occa` | CUDA OCCA kernels | 27868e843eeSJed Brown| `/omp/occa` | OpenMP OCCA kernels | 27968e843eeSJed Brown| `/ocl/occa` | OpenCL OCCA kernels | 28068e843eeSJed Brown| `/gpu/cuda/ref` | Reference pure CUDA kernels | 28168e843eeSJed Brown| `/gpu/cuda/reg` | Pure CUDA kernels using one thread per element | 28268e843eeSJed Brown| `/gpu/cuda/shared` | Optimized pure CUDA kernels using shared memory | 28368e843eeSJed Brown| `/gpu/cuda/gen` | Optimized pure CUDA kernels using code generation | 28468e843eeSJed Brown| `/gpu/magma` | CUDA MAGMA kernels | 285bcb2dfaeSJed Brown 286bcb2dfaeSJed BrownExamples available in this release: 287bcb2dfaeSJed Brown 28868e843eeSJed Brown:::{list-table} 28968e843eeSJed Brown:header-rows: 1 29068e843eeSJed Brown:widths: auto 29168e843eeSJed Brown* - User code 29268e843eeSJed Brown - Example 29368e843eeSJed Brown* - `ceed` 29468e843eeSJed Brown - * ex1 (volume) 29568e843eeSJed Brown * ex2 (surface) 29668e843eeSJed Brown* - `mfem` 29768e843eeSJed Brown - * BP1 (scalar mass operator) 29868e843eeSJed Brown * BP3 (scalar Laplace operator) 29968e843eeSJed Brown* - `petsc` 30068e843eeSJed Brown - * BP1 (scalar mass operator) 30168e843eeSJed Brown * BP2 (vector mass operator) 30268e843eeSJed Brown * BP3 (scalar Laplace operator) 30368e843eeSJed Brown * BP4 (vector Laplace operator) 30468e843eeSJed Brown * BP5 (collocated scalar Laplace operator) 30568e843eeSJed Brown * BP6 (collocated vector Laplace operator) 30668e843eeSJed Brown * Navier-Stokes 30768e843eeSJed Brown* - `nek5000` 30868e843eeSJed Brown - * BP1 (scalar mass operator) 30968e843eeSJed Brown * BP3 (scalar Laplace operator) 31068e843eeSJed Brown::: 311bcb2dfaeSJed Brown 312bcb2dfaeSJed Brown(v0-4)= 313bcb2dfaeSJed Brown 314bcb2dfaeSJed Brown## v0.4 (Apr 1, 2019) 315bcb2dfaeSJed Brown 316bcb2dfaeSJed BrownlibCEED v0.4 was made again publicly available in the second full CEED software 317bcb2dfaeSJed Browndistribution, release CEED 2.0. This release contained notable features, such as 318bcb2dfaeSJed Brownfour new CPU backends, two new GPU backends, CPU backend optimizations, initial 319bcb2dfaeSJed Brownsupport for operator composition, performance benchmarking, and a Navier-Stokes demo. 320bcb2dfaeSJed BrownThe new CPU backends in this release came in two families. The `/cpu/self/*/serial` 321bcb2dfaeSJed Brownbackends process one element at a time and are intended for meshes with a smaller number 322bcb2dfaeSJed Brownof high order elements. The `/cpu/self/*/blocked` backends process blocked batches of 323bcb2dfaeSJed Browneight interlaced elements and are intended for meshes with higher numbers of elements. 324bcb2dfaeSJed BrownThe `/cpu/self/avx/*` backends rely upon AVX instructions to provide vectorized CPU 325bcb2dfaeSJed Brownperformance. The `/cpu/self/xsmm/*` backends rely upon the 326bcb2dfaeSJed Brown[LIBXSMM](http://github.com/hfp/libxsmm) package to provide vectorized CPU 327bcb2dfaeSJed Brownperformance. The `/gpu/cuda/*` backends provide GPU performance strictly using CUDA. 328bcb2dfaeSJed BrownThe `/gpu/cuda/ref` backend is a reference CUDA backend, providing reasonable 329bcb2dfaeSJed Brownperformance for most problem configurations. The `/gpu/cuda/reg` backend uses a simple 330bcb2dfaeSJed Brownparallelization approach, where each thread treats a finite element. Using just in time 331bcb2dfaeSJed Browncompilation, provided by nvrtc (NVidia Runtime Compiler), and runtime parameters, this 332bcb2dfaeSJed Brownbackend unroll loops and map memory address to registers. The `/gpu/cuda/reg` backend 333bcb2dfaeSJed Brownachieve good peak performance for 1D, 2D, and low order 3D problems, but performance 334bcb2dfaeSJed Browndeteriorates very quickly when threads run out of registers. 335bcb2dfaeSJed Brown 336bcb2dfaeSJed BrownA new explicit time-stepping Navier-Stokes solver was added to the family of libCEED 337bcb2dfaeSJed Brownexamples in the `examples/petsc` directory (see {ref}`example-petsc-navier-stokes`). 338bcb2dfaeSJed BrownThis example solves the time-dependent Navier-Stokes equations of compressible gas 339bcb2dfaeSJed Browndynamics in a static Eulerian three-dimensional frame, using structured high-order 340bcb2dfaeSJed Brownfinite/spectral element spatial discretizations and explicit high-order time-stepping 341bcb2dfaeSJed Brown(available in PETSc). Moreover, the Navier-Stokes example was developed using PETSc, 342bcb2dfaeSJed Brownso that the pointwise physics (defined at quadrature points) is separated from the 343bcb2dfaeSJed Brownparallelization and meshing concerns. 344bcb2dfaeSJed Brown 345bcb2dfaeSJed BrownBackends available in this release: 346bcb2dfaeSJed Brown 34768e843eeSJed Brown| CEED resource (`-ceed`) | Backend | 34868e843eeSJed Brown|--------------------------|-----------------------------------------------------| 34968e843eeSJed Brown| `/cpu/self/ref/serial` | Serial reference implementation | 35068e843eeSJed Brown| `/cpu/self/ref/blocked` | Blocked reference implementation | 35168e843eeSJed Brown| `/cpu/self/tmpl` | Backend template, defaults to `/cpu/self/blocked` | 35268e843eeSJed Brown| `/cpu/self/avx/serial` | Serial AVX implementation | 35368e843eeSJed Brown| `/cpu/self/avx/blocked` | Blocked AVX implementation | 35468e843eeSJed Brown| `/cpu/self/xsmm/serial` | Serial LIBXSMM implementation | 35568e843eeSJed Brown| `/cpu/self/xsmm/blocked` | Blocked LIBXSMM implementation | 35668e843eeSJed Brown| `/cpu/occa` | Serial OCCA kernels | 35768e843eeSJed Brown| `/gpu/occa` | CUDA OCCA kernels | 35868e843eeSJed Brown| `/omp/occa` | OpenMP OCCA kernels | 35968e843eeSJed Brown| `/ocl/occa` | OpenCL OCCA kernels | 36068e843eeSJed Brown| `/gpu/cuda/ref` | Reference pure CUDA kernels | 36168e843eeSJed Brown| `/gpu/cuda/reg` | Pure CUDA kernels using one thread per element | 36268e843eeSJed Brown| `/gpu/magma` | CUDA MAGMA kernels | 363bcb2dfaeSJed Brown 364bcb2dfaeSJed BrownExamples available in this release: 365bcb2dfaeSJed Brown 36668e843eeSJed Brown:::{list-table} 36768e843eeSJed Brown:header-rows: 1 36868e843eeSJed Brown:widths: auto 36968e843eeSJed Brown* - User code 37068e843eeSJed Brown - Example 37168e843eeSJed Brown* - `ceed` 37268e843eeSJed Brown - * ex1 (volume) 37368e843eeSJed Brown* - `mfem` 37468e843eeSJed Brown - * BP1 (scalar mass operator) 37568e843eeSJed Brown * BP3 (scalar Laplace operator) 37668e843eeSJed Brown* - `petsc` 37768e843eeSJed Brown - * BP1 (scalar mass operator) 37868e843eeSJed Brown * BP3 (scalar Laplace operator) 37968e843eeSJed Brown * Navier-Stokes 38068e843eeSJed Brown* - `nek5000` 38168e843eeSJed Brown - * BP1 (scalar mass operator) 38268e843eeSJed Brown * BP3 (scalar Laplace operator) 38368e843eeSJed Brown::: 384bcb2dfaeSJed Brown 385bcb2dfaeSJed Brown(v0-3)= 386bcb2dfaeSJed Brown 387bcb2dfaeSJed Brown## v0.3 (Sep 30, 2018) 388bcb2dfaeSJed Brown 389bcb2dfaeSJed BrownNotable features in this release include active/passive field interface, support for 390bcb2dfaeSJed Brownnon-tensor bases, backend optimization, and improved Fortran interface. This release 391bcb2dfaeSJed Brownalso focused on providing improved continuous integration, and many new tests with code 392bcb2dfaeSJed Browncoverage reports of about 90%. This release also provided a significant change to the 393bcb2dfaeSJed Brownpublic interface: a {ref}`CeedQFunction` can take any number of named input and output 394bcb2dfaeSJed Brownarguments while {ref}`CeedOperator` connects them to the actual data, which may be 395bcb2dfaeSJed Brownsupplied explicitly to `CeedOperatorApply()` (active) or separately via 396bcb2dfaeSJed Brown`CeedOperatorSetField()` (passive). This interface change enables reusable libraries 397bcb2dfaeSJed Brownof CeedQFunctions and composition of block solvers constructed using 398bcb2dfaeSJed Brown{ref}`CeedOperator`. A concept of blocked restriction was added to this release and 399bcb2dfaeSJed Brownused in an optimized CPU backend. Although this is typically not visible to the user, 400bcb2dfaeSJed Brownit enables effective use of arbitrary-length SIMD while maintaining cache locality. 401bcb2dfaeSJed BrownThis CPU backend also implements an algebraic factorization of tensor product gradients 402bcb2dfaeSJed Brownto perform fewer operations than standard application of interpolation and 403bcb2dfaeSJed Browndifferentiation from nodes to quadrature points. This algebraic formulation 404bcb2dfaeSJed Brownautomatically supports non-polynomial and non-interpolatory bases, thus is more general 405bcb2dfaeSJed Brownthan the more common derivation in terms of Lagrange polynomials on the quadrature points. 406bcb2dfaeSJed Brown 407bcb2dfaeSJed BrownBackends available in this release: 408bcb2dfaeSJed Brown 40968e843eeSJed Brown| CEED resource (`-ceed`) | Backend | 41068e843eeSJed Brown|-------------------------|-----------------------------------------------------| 41168e843eeSJed Brown| `/cpu/self/blocked` | Blocked reference implementation | 41268e843eeSJed Brown| `/cpu/self/ref` | Serial reference implementation | 41368e843eeSJed Brown| `/cpu/self/tmpl` | Backend template, defaults to `/cpu/self/blocked` | 41468e843eeSJed Brown| `/cpu/occa` | Serial OCCA kernels | 41568e843eeSJed Brown| `/gpu/occa` | CUDA OCCA kernels | 41668e843eeSJed Brown| `/omp/occa` | OpenMP OCCA kernels | 41768e843eeSJed Brown| `/ocl/occa` | OpenCL OCCA kernels | 41868e843eeSJed Brown| `/gpu/magma` | CUDA MAGMA kernels | 419bcb2dfaeSJed Brown 420bcb2dfaeSJed BrownExamples available in this release: 421bcb2dfaeSJed Brown 42268e843eeSJed Brown:::{list-table} 42368e843eeSJed Brown:header-rows: 1 42468e843eeSJed Brown:widths: auto 42568e843eeSJed Brown* - User code 42668e843eeSJed Brown - Example 42768e843eeSJed Brown* - `ceed` 42868e843eeSJed Brown - * ex1 (volume) 42968e843eeSJed Brown* - `mfem` 43068e843eeSJed Brown - * BP1 (scalar mass operator) 43168e843eeSJed Brown * BP3 (scalar Laplace operator) 43268e843eeSJed Brown* - `petsc` 43368e843eeSJed Brown - * BP1 (scalar mass operator) 43468e843eeSJed Brown * BP3 (scalar Laplace operator) 43568e843eeSJed Brown* - `nek5000` 43668e843eeSJed Brown - * BP1 (scalar mass operator) 43768e843eeSJed Brown * BP3 (scalar Laplace operator) 43868e843eeSJed Brown::: 439bcb2dfaeSJed Brown 440bcb2dfaeSJed Brown(v0-21)= 441bcb2dfaeSJed Brown 442bcb2dfaeSJed Brown## v0.21 (Sep 30, 2018) 443bcb2dfaeSJed Brown 444bcb2dfaeSJed BrownA MAGMA backend (which relies upon the 445bcb2dfaeSJed Brown[MAGMA](https://bitbucket.org/icl/magma) package) was integrated in libCEED for this 446bcb2dfaeSJed Brownrelease. This initial integration set up the framework of using MAGMA and provided the 447bcb2dfaeSJed BrownlibCEED functionality through MAGMA kernels as one of libCEED’s computational backends. 448bcb2dfaeSJed BrownAs any other backend, the MAGMA backend provides extended basic data structures for 449bcb2dfaeSJed Brown{ref}`CeedVector`, {ref}`CeedElemRestriction`, and {ref}`CeedOperator`, and implements 450bcb2dfaeSJed Brownthe fundamental CEED building blocks to work with the new data structures. 451bcb2dfaeSJed BrownIn general, the MAGMA-specific data structures keep the libCEED pointers to CPU data 452bcb2dfaeSJed Brownbut also add corresponding device (e.g., GPU) pointers to the data. Coherency is handled 453bcb2dfaeSJed Browninternally, and thus seamlessly to the user, through the functions/methods that are 454bcb2dfaeSJed Brownprovided to support them. 455bcb2dfaeSJed Brown 456bcb2dfaeSJed BrownBackends available in this release: 457bcb2dfaeSJed Brown 45868e843eeSJed Brown| CEED resource (`-ceed`) | Backend | 45968e843eeSJed Brown|-------------------------|---------------------------------| 46068e843eeSJed Brown| `/cpu/self` | Serial reference implementation | 46168e843eeSJed Brown| `/cpu/occa` | Serial OCCA kernels | 46268e843eeSJed Brown| `/gpu/occa` | CUDA OCCA kernels | 46368e843eeSJed Brown| `/omp/occa` | OpenMP OCCA kernels | 46468e843eeSJed Brown| `/ocl/occa` | OpenCL OCCA kernels | 46568e843eeSJed Brown| `/gpu/magma` | CUDA MAGMA kernels | 466bcb2dfaeSJed Brown 467bcb2dfaeSJed BrownExamples available in this release: 468bcb2dfaeSJed Brown 46968e843eeSJed Brown:::{list-table} 47068e843eeSJed Brown:header-rows: 1 47168e843eeSJed Brown:widths: auto 47268e843eeSJed Brown* - User code 47368e843eeSJed Brown - Example 47468e843eeSJed Brown* - `ceed` 47568e843eeSJed Brown - * ex1 (volume) 47668e843eeSJed Brown* - `mfem` 47768e843eeSJed Brown - * BP1 (scalar mass operator) 47868e843eeSJed Brown * BP3 (scalar Laplace operator) 47968e843eeSJed Brown* - `petsc` 48068e843eeSJed Brown - * BP1 (scalar mass operator) 48168e843eeSJed Brown* - `nek5000` 48268e843eeSJed Brown - * BP1 (scalar mass operator) 48368e843eeSJed Brown::: 484bcb2dfaeSJed Brown 485bcb2dfaeSJed Brown(v0-2)= 486bcb2dfaeSJed Brown 487bcb2dfaeSJed Brown## v0.2 (Mar 30, 2018) 488bcb2dfaeSJed Brown 489bcb2dfaeSJed BrownlibCEED was made publicly available the first full CEED software distribution, release 490bcb2dfaeSJed BrownCEED 1.0. The distribution was made available using the Spack package manager to provide 491bcb2dfaeSJed Browna common, easy-to-use build environment, where the user can build the CEED distribution 492bcb2dfaeSJed Brownwith all dependencies. This release included a new Fortran interface for the library. 493bcb2dfaeSJed BrownThis release also contained major improvements in the OCCA backend (including a new 494bcb2dfaeSJed Brown`/ocl/occa` backend) and new examples. The standalone libCEED example was modified to 495bcb2dfaeSJed Browncompute the volume volume of a given mesh (in 1D, 2D, or 3D) and placed in an 496bcb2dfaeSJed Brown`examples/ceed` subfolder. A new `mfem` example to perform BP3 (with the application 497bcb2dfaeSJed Brownof the Laplace operator) was also added to this release. 498bcb2dfaeSJed Brown 499bcb2dfaeSJed BrownBackends available in this release: 500bcb2dfaeSJed Brown 50168e843eeSJed Brown| CEED resource (`-ceed`) | Backend | 50268e843eeSJed Brown|-------------------------|---------------------------------| 50368e843eeSJed Brown| `/cpu/self` | Serial reference implementation | 50468e843eeSJed Brown| `/cpu/occa` | Serial OCCA kernels | 50568e843eeSJed Brown| `/gpu/occa` | CUDA OCCA kernels | 50668e843eeSJed Brown| `/omp/occa` | OpenMP OCCA kernels | 50768e843eeSJed Brown| `/ocl/occa` | OpenCL OCCA kernels | 508bcb2dfaeSJed Brown 509bcb2dfaeSJed BrownExamples available in this release: 510bcb2dfaeSJed Brown 51168e843eeSJed Brown:::{list-table} 51268e843eeSJed Brown:header-rows: 1 51368e843eeSJed Brown:widths: auto 51468e843eeSJed Brown* - User code 51568e843eeSJed Brown - Example 51668e843eeSJed Brown* - `ceed` 51768e843eeSJed Brown - * ex1 (volume) 51868e843eeSJed Brown* - `mfem` 51968e843eeSJed Brown - * BP1 (scalar mass operator) 52068e843eeSJed Brown * BP3 (scalar Laplace operator) 52168e843eeSJed Brown* - `petsc` 52268e843eeSJed Brown - * BP1 (scalar mass operator) 52368e843eeSJed Brown* - `nek5000` 52468e843eeSJed Brown - * BP1 (scalar mass operator) 52568e843eeSJed Brown::: 526bcb2dfaeSJed Brown 527bcb2dfaeSJed Brown(v0-1)= 528bcb2dfaeSJed Brown 529bcb2dfaeSJed Brown## v0.1 (Jan 3, 2018) 530bcb2dfaeSJed Brown 531bcb2dfaeSJed BrownInitial low-level API of the CEED project. The low-level API provides a set of Finite 532bcb2dfaeSJed BrownElements kernels and components for writing new low-level kernels. Examples include: 533bcb2dfaeSJed Brownvector and sparse linear algebra, element matrix assembly over a batch of elements, 534bcb2dfaeSJed Brownpartial assembly and action for efficient high-order operators like mass, diffusion, 535bcb2dfaeSJed Brownadvection, etc. The main goal of the low-level API is to establish the basis for the 536bcb2dfaeSJed Brownhigh-level API. Also, identifying such low-level kernels and providing a reference 537bcb2dfaeSJed Brownimplementation for them serves as the basis for specialized backend implementations. 538bcb2dfaeSJed BrownThis release contained several backends: `/cpu/self`, and backends which rely upon the 539bcb2dfaeSJed Brown[OCCA](http://github.com/libocca/occa) package, such as `/cpu/occa`, 540bcb2dfaeSJed Brown`/gpu/occa`, and `/omp/occa`. 541bcb2dfaeSJed BrownIt also included several examples, in the `examples` folder: 542bcb2dfaeSJed BrownA standalone code that shows the usage of libCEED (with no external 543bcb2dfaeSJed Browndependencies) to apply the Laplace operator, `ex1`; an `mfem` example to perform BP1 544bcb2dfaeSJed Brown(with the application of the mass operator); and a `petsc` example to perform BP1 545bcb2dfaeSJed Brown(with the application of the mass operator). 546bcb2dfaeSJed Brown 547bcb2dfaeSJed BrownBackends available in this release: 548bcb2dfaeSJed Brown 54968e843eeSJed Brown| CEED resource (`-ceed`) | Backend | 55068e843eeSJed Brown|-------------------------|---------------------------------| 55168e843eeSJed Brown| `/cpu/self` | Serial reference implementation | 55268e843eeSJed Brown| `/cpu/occa` | Serial OCCA kernels | 55368e843eeSJed Brown| `/gpu/occa` | CUDA OCCA kernels | 55468e843eeSJed Brown| `/omp/occa` | OpenMP OCCA kernels | 555bcb2dfaeSJed Brown 556bcb2dfaeSJed BrownExamples available in this release: 557bcb2dfaeSJed Brown 558bcb2dfaeSJed Brown| User code | Example | 55968e843eeSJed Brown|-----------------------|-----------------------------------| 56068e843eeSJed Brown| `ceed` | ex1 (scalar Laplace operator) | 56168e843eeSJed Brown| `mfem` | BP1 (scalar mass operator) | 56268e843eeSJed Brown| `petsc` | BP1 (scalar mass operator) | 563bcb2dfaeSJed Brown``` 564