xref: /libCEED/examples/fluids/navierstokes.h (revision 013a555157cefb861605c4e4ea6ce4e03bb7c3d7)
15aed82e4SJeremy L Thompson // Copyright (c) 2017-2024, Lawrence Livermore National Security, LLC and other CEED contributors.
23d8e8822SJeremy L Thompson // All Rights Reserved. See the top-level LICENSE and NOTICE files for details.
377841947SLeila Ghaffari //
43d8e8822SJeremy L Thompson // SPDX-License-Identifier: BSD-2-Clause
577841947SLeila Ghaffari //
63d8e8822SJeremy L Thompson // This file is part of CEED:  http://github.com/ceed
724a65d3dSJeremy L Thompson #pragma once
877841947SLeila Ghaffari 
977841947SLeila Ghaffari #include <ceed.h>
1091c97f41SJames Wright #include <mat-ceed.h>
115037d55dSJames Wright #include <petsc-ceed-utils.h>
1277841947SLeila Ghaffari #include <petscts.h>
1377841947SLeila Ghaffari #include <stdbool.h>
142b730f8bSJeremy L Thompson 
154021610dSJames Wright #include "./include/petsc_ops.h"
1697baf651SJames Wright #include "qfunctions/newtonian_types.h"
1777841947SLeila Ghaffari 
1849a40c8aSKenneth E. Jansen #if PETSC_VERSION_LT(3, 21, 0)
19fd9d666bSJames Wright #error "PETSc v3.21 or later is required"
2049a40c8aSKenneth E. Jansen #endif
2149a40c8aSKenneth E. Jansen 
2277841947SLeila Ghaffari // -----------------------------------------------------------------------------
2377841947SLeila Ghaffari // Enums
2477841947SLeila Ghaffari // -----------------------------------------------------------------------------
2577841947SLeila Ghaffari 
2677841947SLeila Ghaffari // Euler - test cases
2777841947SLeila Ghaffari typedef enum {
28bc7bbd5dSLeila Ghaffari   EULER_TEST_ISENTROPIC_VORTEX = 0,
2977841947SLeila Ghaffari   EULER_TEST_1                 = 1,
3077841947SLeila Ghaffari   EULER_TEST_2                 = 2,
3177841947SLeila Ghaffari   EULER_TEST_3                 = 3,
3277841947SLeila Ghaffari   EULER_TEST_4                 = 4,
3332f166c6SLeila Ghaffari   EULER_TEST_5                 = 5,
3477841947SLeila Ghaffari } EulerTestType;
352b730f8bSJeremy L Thompson static const char *const EulerTestTypes[] = {"isentropic_vortex", "test_1",      "test_2", "test_3", "test_4", "test_5",
362b730f8bSJeremy L Thompson                                              "EulerTestType",     "EULER_TEST_", NULL};
3777841947SLeila Ghaffari 
38700ae941SJames Wright // Advection - Wind types
39700ae941SJames Wright static const char *const WindTypes[] = {"rotation", "translation", "WindType", "WIND_", NULL};
40700ae941SJames Wright 
417b77ddfdSJames Wright // Advection - Initial Condition Types
427b77ddfdSJames Wright static const char *const AdvectionICTypes[] = {"sphere", "cylinder", "cosine_hill", "skew", "AdvectionICType", "ADVECTIONIC_", NULL};
43700ae941SJames Wright 
44700ae941SJames Wright // Advection - Bubble Continuity Types
4593639ffbSJames Wright static const char *const BubbleContinuityTypes[] = {"smooth", "back_sharp", "thick", "cosine", "BubbleContinuityType", "BUBBLE_CONTINUITY_", NULL};
46700ae941SJames Wright 
4777841947SLeila Ghaffari // Stabilization methods
482b730f8bSJeremy L Thompson static const char *const StabilizationTypes[] = {"none", "SU", "SUPG", "StabilizationType", "STAB_", NULL};
4977841947SLeila Ghaffari 
50b18328c4SJames Wright // Stabilization tau constants
51b18328c4SJames Wright static const char *const StabilizationTauTypes[] = {"Ctau", "AdvDiff_Shakib", "AdvDiff_Shakib_P", "StabilizationTauType", "STAB_TAU_", NULL};
52b18328c4SJames Wright 
5351b00d91SJames Wright // Test mode type
548fb33541SJames Wright typedef enum {
558fb33541SJames Wright   TESTTYPE_NONE           = 0,
568fb33541SJames Wright   TESTTYPE_SOLVER         = 1,
578fb33541SJames Wright   TESTTYPE_TURB_SPANSTATS = 2,
58970fa48bSJames Wright   TESTTYPE_DIFF_FILTER    = 3,
598fb33541SJames Wright } TestType;
60970fa48bSJames Wright static const char *const TestTypes[] = {"none", "solver", "turb_spanstats", "diff_filter", "TestType", "TESTTYPE_", NULL};
618fb33541SJames Wright 
622526956eSJames Wright // Subgrid-Stress mode type
6319ffbc25SJames Wright typedef enum {
6419ffbc25SJames Wright   SGS_MODEL_NONE        = 0,
6519ffbc25SJames Wright   SGS_MODEL_DATA_DRIVEN = 1,
6619ffbc25SJames Wright } SGSModelType;
6719ffbc25SJames Wright static const char *const SGSModelTypes[] = {"none", "data_driven", "SGSModelType", "SGS_MODEL_", NULL};
6819ffbc25SJames Wright 
69*013a5551SJames Wright // Subgrid-Stress mode type
70*013a5551SJames Wright typedef enum {
71*013a5551SJames Wright   SGS_MODEL_DD_FUSED           = 0,
72*013a5551SJames Wright   SGS_MODEL_DD_SEQENTIAL_CEED  = 1,
73*013a5551SJames Wright   SGS_MODEL_DD_SEQENTIAL_TORCH = 2,
74*013a5551SJames Wright } SGSModelDDImplementation;
75*013a5551SJames Wright static const char *const SGSModelDDImplementations[] = {"fused", "sequential_ceed", "sequential_torch", "SGSModelDDImplementation", "SGS_MODEL_DD_",
76*013a5551SJames Wright                                                         NULL};
77*013a5551SJames Wright 
782526956eSJames Wright // Mesh transformation type
792526956eSJames Wright typedef enum {
802526956eSJames Wright   MESH_TRANSFORM_NONE      = 0,
812526956eSJames Wright   MESH_TRANSFORM_PLATEMESH = 1,
822526956eSJames Wright } MeshTransformType;
832526956eSJames Wright static const char *const MeshTransformTypes[] = {"none", "platemesh", "MeshTransformType", "MESH_TRANSFORM_", NULL};
842526956eSJames Wright 
85bd882c8aSJames Wright static const char *const DifferentialFilterDampingFunctions[] = {
86bd882c8aSJames Wright     "none", "van_driest", "mms", "DifferentialFilterDampingFunction", "DIFF_FILTER_DAMP_", NULL};
87bd882c8aSJames Wright 
8877841947SLeila Ghaffari // -----------------------------------------------------------------------------
8975d1798cSJames Wright // Log Events
9075d1798cSJames Wright // -----------------------------------------------------------------------------
9175d1798cSJames Wright extern PetscLogEvent FLUIDS_CeedOperatorApply;
92844b3d4aSRiccardo Balin extern PetscLogEvent FLUIDS_SmartRedis_Init;
93844b3d4aSRiccardo Balin extern PetscLogEvent FLUIDS_SmartRedis_Meta;
94844b3d4aSRiccardo Balin extern PetscLogEvent FLUIDS_SmartRedis_Train;
95844b3d4aSRiccardo Balin extern PetscLogEvent FLUIDS_TrainDataCompute;
963737f832SJames Wright extern PetscLogEvent FLUIDS_DifferentialFilter;
973737f832SJames Wright extern PetscLogEvent FLUIDS_VelocityGradientProjection;
9875d1798cSJames Wright PetscErrorCode       RegisterLogEvents();
9975d1798cSJames Wright 
10075d1798cSJames Wright // -----------------------------------------------------------------------------
10177841947SLeila Ghaffari // Structs
10277841947SLeila Ghaffari // -----------------------------------------------------------------------------
10377841947SLeila Ghaffari // Structs declarations
10477841947SLeila Ghaffari typedef struct AppCtx_private   *AppCtx;
10577841947SLeila Ghaffari typedef struct CeedData_private *CeedData;
10677841947SLeila Ghaffari typedef struct User_private     *User;
10777841947SLeila Ghaffari typedef struct Units_private    *Units;
10877841947SLeila Ghaffari typedef struct SimpleBC_private *SimpleBC;
10977841947SLeila Ghaffari typedef struct Physics_private  *Physics;
11077841947SLeila Ghaffari 
11177841947SLeila Ghaffari // Application context from user command line options
11277841947SLeila Ghaffari struct AppCtx_private {
11377841947SLeila Ghaffari   // libCEED arguments
11477841947SLeila Ghaffari   char     ceed_resource[PETSC_MAX_PATH_LEN];  // libCEED backend
11577841947SLeila Ghaffari   PetscInt degree;
11677841947SLeila Ghaffari   PetscInt q_extra;
117544be873SJed Brown   // Solver arguments
118544be873SJed Brown   MatType amat_type;
11977841947SLeila Ghaffari   // Post-processing arguments
12037cbb16aSJed Brown   PetscInt  checkpoint_interval;
12177841947SLeila Ghaffari   PetscInt  viz_refine;
12277841947SLeila Ghaffari   PetscInt  cont_steps;
1234de8550aSJed Brown   PetscReal cont_time;
12469293791SJames Wright   char      cont_file[PETSC_MAX_PATH_LEN];
12569293791SJames Wright   char      cont_time_file[PETSC_MAX_PATH_LEN];
12677841947SLeila Ghaffari   char      output_dir[PETSC_MAX_PATH_LEN];
12769293791SJames Wright   PetscBool add_stepnum2bin;
12837cbb16aSJed Brown   PetscBool checkpoint_vtk;
12977841947SLeila Ghaffari   // Problem type arguments
13077841947SLeila Ghaffari   PetscFunctionList problems;
13177841947SLeila Ghaffari   char              problem_name[PETSC_MAX_PATH_LEN];
13277841947SLeila Ghaffari   // Test mode arguments
1338fb33541SJames Wright   TestType    test_type;
13477841947SLeila Ghaffari   PetscScalar test_tol;
135b7d66439SJames Wright   char        test_file_path[PETSC_MAX_PATH_LEN];
136b7d66439SJames Wright   // Turbulent spanwise statistics
137b7d66439SJames Wright   PetscBool         turb_spanstats_enable;
138b7d66439SJames Wright   PetscInt          turb_spanstats_collect_interval;
139b7d66439SJames Wright   PetscInt          turb_spanstats_viewer_interval;
140b7d66439SJames Wright   PetscViewer       turb_spanstats_viewer;
141b7d66439SJames Wright   PetscViewerFormat turb_spanstats_viewer_format;
142ca69d878SAdeleke O. Bankole   // Wall forces
143ca69d878SAdeleke O. Bankole   struct {
144ca69d878SAdeleke O. Bankole     PetscInt          num_wall;
145ca69d878SAdeleke O. Bankole     PetscInt         *walls;
146ca69d878SAdeleke O. Bankole     PetscViewer       viewer;
147ca69d878SAdeleke O. Bankole     PetscViewerFormat viewer_format;
148ca69d878SAdeleke O. Bankole     PetscBool         header_written;
149ca69d878SAdeleke O. Bankole   } wall_forces;
15019ffbc25SJames Wright   // Subgrid Stress Model
15119ffbc25SJames Wright   SGSModelType sgs_model_type;
15228134cfaSJames Wright   PetscBool    sgs_train_enable;
1534e9802d1SJames Wright   // Differential Filtering
1544e9802d1SJames Wright   PetscBool         diff_filter_monitor;
1552526956eSJames Wright   MeshTransformType mesh_transform_type;
15677841947SLeila Ghaffari };
15777841947SLeila Ghaffari 
15877841947SLeila Ghaffari // libCEED data struct
15977841947SLeila Ghaffari struct CeedData_private {
16077841947SLeila Ghaffari   CeedVector           x_coord, q_data;
161e9c36be0SJames Wright   CeedBasis            basis_x, basis_q;
16277841947SLeila Ghaffari   CeedElemRestriction  elem_restr_x, elem_restr_q, elem_restr_qd_i;
1635263e9c6SJames Wright   OperatorApplyContext op_ics_ctx;
16477841947SLeila Ghaffari };
16577841947SLeila Ghaffari 
16651ee423eSJames Wright typedef struct {
16751ee423eSJames Wright   DM                    dm;
1681737222fSJames Wright   PetscSF               sf;  // For communicating child data to parents
169ed331efdSJames Wright   OperatorApplyContext  op_stats_collect_ctx, op_proj_rhs_ctx;
17051ee423eSJames Wright   PetscInt              num_comp_stats;
171ed331efdSJames Wright   Vec                   Child_Stats_loc, Parent_Stats_loc;
172a175e481SJames Wright   KSP                   ksp;         // For the L^2 projection solve
173a175e481SJames Wright   CeedScalar            span_width;  // spanwise width of the child domain
174b7d66439SJames Wright   PetscBool             do_mms_test;
1754021610dSJames Wright   OperatorApplyContext  mms_error_ctx;
176495b9769SJames Wright   CeedContextFieldLabel solution_time_label, previous_time_label;
177cbef7084SJames Wright } SpanStatsData;
17851ee423eSJames Wright 
179999ff5c7SJames Wright typedef struct {
180999ff5c7SJames Wright   DM                   dm;
181999ff5c7SJames Wright   PetscInt             num_comp;
182999ff5c7SJames Wright   OperatorApplyContext l2_rhs_ctx;
183999ff5c7SJames Wright   KSP                  ksp;
184999ff5c7SJames Wright } *NodalProjectionData;
185999ff5c7SJames Wright 
1866b3fb9aeSJames Wright typedef PetscErrorCode (*SgsDDNodalStressEval)(User user, Vec Q_loc, Vec VelocityGradient, Vec SGSNodal_loc);
1871250e899SJames Wright typedef PetscErrorCode (*SgsDDNodalStressInference)(Vec DD_Inputs_loc, Vec DD_Outputs_loc, void *ctx);
1889a17443dSJames Wright typedef struct {
1891250e899SJames Wright   DM                        dm_sgs, dm_dd_inputs, dm_dd_outputs;
1905f5d6789SAlex Lindsay   PetscInt                  num_comp_sgs, num_comp_inputs, num_comp_outputs;
1911250e899SJames Wright   OperatorApplyContext      op_nodal_evaluation_ctx, op_nodal_dd_inputs_ctx, op_nodal_dd_outputs_ctx, op_sgs_apply_ctx;
1921250e899SJames Wright   CeedVector                sgs_nodal_ceed, grad_velo_ceed;
1936b3fb9aeSJames Wright   SgsDDNodalStressEval      sgs_nodal_eval;
1941250e899SJames Wright   SgsDDNodalStressInference sgs_nodal_inference;
1951250e899SJames Wright   void                     *sgs_nodal_inference_ctx;
1961250e899SJames Wright   PetscErrorCode (*sgs_nodal_inference_ctx_destroy)(void *ctx);
197cbef7084SJames Wright } *SgsDDData;
1989a17443dSJames Wright 
1994e9802d1SJames Wright typedef struct {
200ee3b213aSJames Wright   DM                   dm_dd_training;
201c79b0730SJames Wright   PetscInt             num_comp_dd_inputs, write_data_interval, num_filter_widths;
202c79b0730SJames Wright   PetscScalar          filter_widths[16];
203ee3b213aSJames Wright   OperatorApplyContext op_training_data_calc_ctx;
204ee3b213aSJames Wright   NodalProjectionData  filtered_grad_velo_proj;
205ee3b213aSJames Wright   size_t               training_data_array_dims[2];
206ee3b213aSJames Wright   PetscBool            overwrite_training_data;
207ee3b213aSJames Wright } *SGS_DD_TrainingData;
208ee3b213aSJames Wright 
209ee3b213aSJames Wright typedef struct {
2104e9802d1SJames Wright   DM                    dm_filter;
21181530087SJames Wright   PetscInt              num_filtered_fields;
21281530087SJames Wright   CeedInt              *num_field_components;
213051427eeSJames Wright   PetscInt              field_prim_state, field_velo_prod;
2144e9802d1SJames Wright   OperatorApplyContext  op_rhs_ctx;
2154e9802d1SJames Wright   KSP                   ksp;
21656f5e811SJames Wright   PetscObjectState      X_loc_state;
2172029a677SJames Wright   PetscBool             do_mms_test;
218c79b0730SJames Wright   CeedContextFieldLabel filter_width_scaling_label;
2194e9802d1SJames Wright } *DiffFilterData;
2204e9802d1SJames Wright 
2218146534cSJames Wright typedef struct {
2228146534cSJames Wright   void    *client;
2238146534cSJames Wright   char     rank_id_name[16];
2248146534cSJames Wright   PetscInt collocated_database_num_ranks;
2258146534cSJames Wright } *SmartSimData;
2268146534cSJames Wright 
22777841947SLeila Ghaffari // PETSc user data
22877841947SLeila Ghaffari struct User_private {
22977841947SLeila Ghaffari   MPI_Comm             comm;
23077841947SLeila Ghaffari   DM                   dm;
23177841947SLeila Ghaffari   DM                   dm_viz;
23277841947SLeila Ghaffari   Mat                  interp_viz;
23377841947SLeila Ghaffari   Ceed                 ceed;
23477841947SLeila Ghaffari   Units                units;
23504292f7dSJames Wright   Vec                  Q_loc, Q_dot_loc;
23677841947SLeila Ghaffari   Physics              phys;
23777841947SLeila Ghaffari   AppCtx               app_ctx;
23891c97f41SJames Wright   CeedVector           q_ceed, q_dot_ceed, g_ceed, x_ceed;
239a5b0ec6fSJames Wright   CeedOperator         op_ifunction;
24091c97f41SJames Wright   Mat                  mat_ijacobian;
24104292f7dSJames Wright   KSP                  mass_ksp;
2429ad5e8e4SJames Wright   OperatorApplyContext op_rhs_ctx, op_strong_bc_ctx;
24315637395SJames Wright   CeedScalar           time_bc_set;
244cbef7084SJames Wright   SpanStatsData        spanstats;
245999ff5c7SJames Wright   NodalProjectionData  grad_velo_proj;
246cbef7084SJames Wright   SgsDDData            sgs_dd_data;
2474e9802d1SJames Wright   DiffFilterData       diff_filter;
2488146534cSJames Wright   SmartSimData         smartsim;
249ee3b213aSJames Wright   SGS_DD_TrainingData  sgs_dd_train;
25077841947SLeila Ghaffari };
25177841947SLeila Ghaffari 
25277841947SLeila Ghaffari // Units
25377841947SLeila Ghaffari struct Units_private {
25477841947SLeila Ghaffari   // fundamental units
25577841947SLeila Ghaffari   PetscScalar meter;
25677841947SLeila Ghaffari   PetscScalar kilogram;
25777841947SLeila Ghaffari   PetscScalar second;
25877841947SLeila Ghaffari   PetscScalar Kelvin;
25977841947SLeila Ghaffari   // derived units
26077841947SLeila Ghaffari   PetscScalar Pascal;
26177841947SLeila Ghaffari   PetscScalar J_per_kg_K;
26277841947SLeila Ghaffari   PetscScalar m_per_squared_s;
26377841947SLeila Ghaffari   PetscScalar W_per_m_K;
26477841947SLeila Ghaffari   PetscScalar Joule;
26577841947SLeila Ghaffari };
26677841947SLeila Ghaffari 
26777841947SLeila Ghaffari // Boundary conditions
26877841947SLeila Ghaffari struct SimpleBC_private {
2692fe7aee7SLeila Ghaffari   PetscInt num_wall,  // Number of faces with wall BCs
2702fe7aee7SLeila Ghaffari       wall_comps[5],  // An array of constrained component numbers
2712fe7aee7SLeila Ghaffari       num_comps,
2727c5bba50SJames Wright       num_symmetry[3],  // Number of faces with symmetry BCs
2739f844368SJames Wright       num_inflow, num_outflow, num_freestream, num_slip;
2749f844368SJames Wright   PetscInt walls[16], symmetries[3][16], inflows[16], outflows[16], freestreams[16], slips[16];
27577841947SLeila Ghaffari };
27677841947SLeila Ghaffari 
27777841947SLeila Ghaffari // Struct that contains all enums and structs used for the physics of all problems
27877841947SLeila Ghaffari struct Physics_private {
27977841947SLeila Ghaffari   PetscBool             implicit;
28097baf651SJames Wright   StateVariable         state_var;
28111436a05SJames Wright   CeedContextFieldLabel solution_time_label;
282cd4035ffSJames Wright   CeedContextFieldLabel stg_solution_time_label;
28388626eedSJames Wright   CeedContextFieldLabel timestep_size_label;
284841e4c73SJed Brown   CeedContextFieldLabel ics_time_label;
28577841947SLeila Ghaffari };
28677841947SLeila Ghaffari 
28791e5af17SJed Brown typedef struct {
28891e5af17SJed Brown   CeedQFunctionUser    qfunction;
28991e5af17SJed Brown   const char          *qfunction_loc;
290841e4c73SJed Brown   CeedQFunctionContext qfunction_context;
29191e5af17SJed Brown } ProblemQFunctionSpec;
29291e5af17SJed Brown 
29377841947SLeila Ghaffari // Problem specific data
294731c13d7SJames Wright typedef struct ProblemData_private *ProblemData;
295841e4c73SJed Brown struct ProblemData_private {
296e334ad8fSJed Brown   CeedInt              dim, q_data_size_vol, q_data_size_sur, jac_data_size_sur;
2971864f1c2SLeila Ghaffari   CeedScalar           dm_scale;
298cfb075a4SJames Wright   ProblemQFunctionSpec ics, apply_vol_rhs, apply_vol_ifunction, apply_vol_ijacobian, apply_inflow, apply_outflow, apply_freestream, apply_slip,
299cfb075a4SJames Wright       apply_inflow_jacobian, apply_outflow_jacobian, apply_freestream_jacobian, apply_slip_jacobian;
30077841947SLeila Ghaffari   bool      non_zero_time;
301752a08a7SJames Wright   PetscBool bc_from_ics, use_strong_bc_ceed, uses_newtonian;
302731c13d7SJames Wright   PetscErrorCode (*print_info)(User, ProblemData, AppCtx);
303b4e9a8f8SJames Wright   PetscErrorCode (*create_mass_operator)(User, CeedOperator *);
304841e4c73SJed Brown };
30577841947SLeila Ghaffari 
306841e4c73SJed Brown extern int FreeContextPetsc(void *);
307841e4c73SJed Brown 
30877841947SLeila Ghaffari // -----------------------------------------------------------------------------
30977841947SLeila Ghaffari // Set up problems
31077841947SLeila Ghaffari // -----------------------------------------------------------------------------
31177841947SLeila Ghaffari // Set up function for each problem
312731c13d7SJames Wright extern PetscErrorCode NS_TAYLOR_GREEN(ProblemData problem, DM dm, void *ctx, SimpleBC bc);
313731c13d7SJames Wright extern PetscErrorCode NS_GAUSSIAN_WAVE(ProblemData problem, DM dm, void *ctx, SimpleBC bc);
314731c13d7SJames Wright extern PetscErrorCode NS_CHANNEL(ProblemData problem, DM dm, void *ctx, SimpleBC bc);
315731c13d7SJames Wright extern PetscErrorCode NS_BLASIUS(ProblemData problem, DM dm, void *ctx, SimpleBC bc);
316731c13d7SJames Wright extern PetscErrorCode NS_NEWTONIAN_IG(ProblemData problem, DM dm, void *ctx, SimpleBC bc);
317731c13d7SJames Wright extern PetscErrorCode NS_DENSITY_CURRENT(ProblemData problem, DM dm, void *ctx, SimpleBC bc);
318731c13d7SJames Wright extern PetscErrorCode NS_EULER_VORTEX(ProblemData problem, DM dm, void *ctx, SimpleBC bc);
319731c13d7SJames Wright extern PetscErrorCode NS_SHOCKTUBE(ProblemData problem, DM dm, void *ctx, SimpleBC bc);
320731c13d7SJames Wright extern PetscErrorCode NS_ADVECTION(ProblemData problem, DM dm, void *ctx, SimpleBC bc);
321731c13d7SJames Wright extern PetscErrorCode NS_ADVECTION2D(ProblemData problem, DM dm, void *ctx, SimpleBC bc);
32277841947SLeila Ghaffari 
32377841947SLeila Ghaffari // Print function for each problem
324731c13d7SJames Wright extern PetscErrorCode PRINT_NEWTONIAN(User user, ProblemData problem, AppCtx app_ctx);
32577841947SLeila Ghaffari 
326731c13d7SJames Wright extern PetscErrorCode PRINT_EULER_VORTEX(User user, ProblemData problem, AppCtx app_ctx);
32777841947SLeila Ghaffari 
328731c13d7SJames Wright extern PetscErrorCode PRINT_SHOCKTUBE(User user, ProblemData problem, AppCtx app_ctx);
329019b7682STimothy Aiken 
330731c13d7SJames Wright extern PetscErrorCode PRINT_ADVECTION(User user, ProblemData problem, AppCtx app_ctx);
33177841947SLeila Ghaffari 
332731c13d7SJames Wright extern PetscErrorCode PRINT_ADVECTION2D(User user, ProblemData problem, AppCtx app_ctx);
33377841947SLeila Ghaffari 
3347bc7b61fSJames Wright PetscErrorCode PrintRunInfo(User user, Physics phys_ctx, ProblemData problem, TS ts);
3352e31f396SJames Wright 
33677841947SLeila Ghaffari // -----------------------------------------------------------------------------
33777841947SLeila Ghaffari // libCEED functions
33877841947SLeila Ghaffari // -----------------------------------------------------------------------------
33977841947SLeila Ghaffari // Utility function to create local CEED restriction
340431cd09aSJames Wright PetscErrorCode CreateRestrictionFromPlex(Ceed ceed, DM dm, CeedInt height, DMLabel domain_label, CeedInt label_value, PetscInt dm_field,
341431cd09aSJames Wright                                          CeedElemRestriction *elem_restr);
34277841947SLeila Ghaffari 
343bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, PetscInt dm_field,
344bb85d312SJames Wright                                                CeedElemRestriction *restriction);
345bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionCoordinateCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height,
346bb85d312SJames Wright                                                          CeedElemRestriction *restriction);
347bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionQDataCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height,
348bb85d312SJames Wright                                                     PetscInt q_data_size, CeedElemRestriction *restriction);
349bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionCollocatedCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height,
350bb85d312SJames Wright                                                          PetscInt q_data_size, CeedElemRestriction *restriction);
35177841947SLeila Ghaffari 
3520814d5a7SKenneth E. Jansen PetscErrorCode CreateBasisFromPlex(Ceed ceed, DM dm, DMLabel domain_label, CeedInt label_value, CeedInt height, CeedInt dm_field, CeedBasis *basis);
3530814d5a7SKenneth E. Jansen 
354731c13d7SJames Wright PetscErrorCode SetupLibceed(Ceed ceed, CeedData ceed_data, DM dm, User user, AppCtx app_ctx, ProblemData problem, SimpleBC bc);
35577841947SLeila Ghaffari 
356cfb075a4SJames Wright PetscErrorCode QDataGet(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, CeedElemRestriction elem_restr_x, CeedBasis basis_x,
357cfb075a4SJames Wright                         CeedVector x_coord, CeedElemRestriction *elem_restr_qd, CeedVector *q_data, CeedInt *q_data_size);
358cfb075a4SJames Wright PetscErrorCode QDataGetNumComponents(DM dm, CeedInt *q_data_size);
359cfb075a4SJames Wright PetscErrorCode QDataBoundaryGet(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, CeedElemRestriction elem_restr_x, CeedBasis basis_x,
360cfb075a4SJames Wright                                 CeedVector x_coord, CeedElemRestriction *elem_restr_qd, CeedVector *q_data, CeedInt *q_data_size);
361cfb075a4SJames Wright PetscErrorCode QDataBoundaryGetNumComponents(DM dm, CeedInt *q_data_size);
36277841947SLeila Ghaffari // -----------------------------------------------------------------------------
36377841947SLeila Ghaffari // Time-stepping functions
36477841947SLeila Ghaffari // -----------------------------------------------------------------------------
36577841947SLeila Ghaffari // RHS (Explicit time-stepper) function setup
36677841947SLeila Ghaffari PetscErrorCode RHS_NS(TS ts, PetscReal t, Vec Q, Vec G, void *user_data);
36777841947SLeila Ghaffari 
36877841947SLeila Ghaffari // Implicit time-stepper function setup
3692b730f8bSJeremy L Thompson PetscErrorCode IFunction_NS(TS ts, PetscReal t, Vec Q, Vec Q_dot, Vec G, void *user_data);
37077841947SLeila Ghaffari 
37177841947SLeila Ghaffari // User provided TS Monitor
3722b730f8bSJeremy L Thompson PetscErrorCode TSMonitor_NS(TS ts, PetscInt step_no, PetscReal time, Vec Q, void *ctx);
37377841947SLeila Ghaffari 
37477841947SLeila Ghaffari // TS: Create, setup, and solve
37524078fc4SJames Wright PetscErrorCode TSSolve_NS(DM dm, User user, AppCtx app_ctx, Physics phys, ProblemData problem, Vec *Q, PetscScalar *f_time, TS *ts);
37677841947SLeila Ghaffari 
377a0b9a424SJames Wright // Update Boundary Values when time has changed
378a0b9a424SJames Wright PetscErrorCode UpdateBoundaryValues(User user, Vec Q_loc, PetscReal t);
379a0b9a424SJames Wright 
38077841947SLeila Ghaffari // -----------------------------------------------------------------------------
38177841947SLeila Ghaffari // Setup DM
38277841947SLeila Ghaffari // -----------------------------------------------------------------------------
3831864f1c2SLeila Ghaffari // Create mesh
384731c13d7SJames Wright PetscErrorCode CreateDM(MPI_Comm comm, ProblemData problem, MatType, VecType, DM *dm);
38577841947SLeila Ghaffari 
38677841947SLeila Ghaffari // Set up DM
387731c13d7SJames Wright PetscErrorCode SetUpDM(DM dm, ProblemData problem, PetscInt degree, PetscInt q_extra, SimpleBC bc, Physics phys);
388d68a66c4SJames Wright PetscErrorCode DMSetupByOrderBegin_FEM(PetscBool setup_faces, PetscBool setup_coords, PetscInt degree, PetscInt coord_order, PetscInt q_extra,
38985df0564SJames Wright                                        PetscInt num_fields, const PetscInt *field_sizes, DM dm);
390d68a66c4SJames Wright PetscErrorCode DMSetupByOrderEnd_FEM(PetscBool setup_coords, DM dm);
391d68a66c4SJames Wright PetscErrorCode DMSetupByOrder_FEM(PetscBool setup_faces, PetscBool setup_coords, PetscInt degree, PetscInt coord_order, PetscInt q_extra,
39285df0564SJames Wright                                   PetscInt num_fields, const PetscInt *field_sizes, DM dm);
39377841947SLeila Ghaffari 
39477841947SLeila Ghaffari // Refine DM for high-order viz
395731c13d7SJames Wright PetscErrorCode VizRefineDM(DM dm, User user, ProblemData problem, SimpleBC bc, Physics phys);
39677841947SLeila Ghaffari 
39777841947SLeila Ghaffari // -----------------------------------------------------------------------------
39877841947SLeila Ghaffari // Process command line options
39977841947SLeila Ghaffari // -----------------------------------------------------------------------------
40077841947SLeila Ghaffari // Register problems to be available on the command line
40177841947SLeila Ghaffari PetscErrorCode RegisterProblems_NS(AppCtx app_ctx);
40277841947SLeila Ghaffari 
40377841947SLeila Ghaffari // Process general command line options
4042b730f8bSJeremy L Thompson PetscErrorCode ProcessCommandLineOptions(MPI_Comm comm, AppCtx app_ctx, SimpleBC bc);
40577841947SLeila Ghaffari 
40677841947SLeila Ghaffari // -----------------------------------------------------------------------------
40777841947SLeila Ghaffari // Miscellaneous utility functions
40877841947SLeila Ghaffari // -----------------------------------------------------------------------------
4093a10b0eeSJames Wright PetscErrorCode GetInverseMultiplicity(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, PetscInt dm_field,
4103a10b0eeSJames Wright                                       PetscBool get_global_multiplicity, CeedElemRestriction *elem_restr_inv_multiplicity,
4113a10b0eeSJames Wright                                       CeedVector *inv_multiplicity);
4122b730f8bSJeremy L Thompson PetscErrorCode ICs_FixMultiplicity(DM dm, CeedData ceed_data, User user, Vec Q_loc, Vec Q, CeedScalar time);
41377841947SLeila Ghaffari 
4143c9e7ad1SJames Wright PetscErrorCode DMPlexInsertBoundaryValues_FromICs(DM dm, PetscBool insert_essential, Vec Q_loc, PetscReal time, Vec face_geom_FVM, Vec cell_geom_FVM,
4152b730f8bSJeremy L Thompson                                                   Vec grad_FVM);
41677841947SLeila Ghaffari 
41777841947SLeila Ghaffari // Compare reference solution values with current test run for CI
4183c9e7ad1SJames Wright PetscErrorCode RegressionTest(AppCtx app_ctx, Vec Q);
41977841947SLeila Ghaffari 
42077841947SLeila Ghaffari // Get error for problems with exact solutions
4213c9e7ad1SJames Wright PetscErrorCode PrintError(CeedData ceed_data, DM dm, User user, Vec Q, PetscScalar final_time);
42277841947SLeila Ghaffari 
42377841947SLeila Ghaffari // Post-processing
424731c13d7SJames Wright PetscErrorCode PostProcess(TS ts, CeedData ceed_data, DM dm, ProblemData problem, User user, Vec Q, PetscScalar final_time);
42577841947SLeila Ghaffari 
42677841947SLeila Ghaffari // -- Gather initial Q values in case of continuation of simulation
42777841947SLeila Ghaffari PetscErrorCode SetupICsFromBinary(MPI_Comm comm, AppCtx app_ctx, Vec Q);
42877841947SLeila Ghaffari 
42977841947SLeila Ghaffari // Record boundary values from initial condition
4303c9e7ad1SJames Wright PetscErrorCode SetBCsFromICs(DM dm, Vec Q, Vec Q_loc);
43177841947SLeila Ghaffari 
4324de8550aSJed Brown // Versioning token for binary checkpoints
4330de6a49fSJames Wright extern const PetscInt32 FLUIDS_FILE_TOKEN;  // for backwards compatibility
4340de6a49fSJames Wright extern const PetscInt32 FLUIDS_FILE_TOKEN_32;
4350de6a49fSJames Wright extern const PetscInt32 FLUIDS_FILE_TOKEN_64;
4364de8550aSJed Brown 
437ef080ff9SJames Wright // Create appropriate mass qfunction based on number of components N
438ef080ff9SJames Wright PetscErrorCode CreateMassQFunction(Ceed ceed, CeedInt N, CeedInt q_data_size, CeedQFunction *qf);
439ef080ff9SJames Wright 
440999ff5c7SJames Wright PetscErrorCode NodalProjectionDataDestroy(NodalProjectionData context);
441999ff5c7SJames Wright 
442cbef7084SJames Wright PetscErrorCode PhastaDatFileOpen(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], const PetscInt char_array_len, PetscInt dims[2],
4438b892a05SJames Wright                                  FILE **fp);
4448b892a05SJames Wright 
445cbef7084SJames Wright PetscErrorCode PhastaDatFileGetNRows(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], PetscInt *nrows);
4468b892a05SJames Wright 
447cbef7084SJames Wright PetscErrorCode PhastaDatFileReadToArrayReal(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], PetscReal array[]);
4484cc9442bSJames Wright 
4498b892a05SJames Wright // -----------------------------------------------------------------------------
4508b892a05SJames Wright // Turbulence Statistics Collection Functions
4518b892a05SJames Wright // -----------------------------------------------------------------------------
4528b892a05SJames Wright 
453731c13d7SJames Wright PetscErrorCode TurbulenceStatisticsSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData problem);
454f5452247SJames Wright PetscErrorCode TSMonitor_TurbulenceStatistics(TS ts, PetscInt steps, PetscReal solution_time, Vec Q, void *ctx);
455f5452247SJames Wright PetscErrorCode TurbulenceStatisticsDestroy(User user, CeedData ceed_data);
456fd170fd0SJames Wright 
45777841947SLeila Ghaffari // -----------------------------------------------------------------------------
4584cc9442bSJames Wright // Data-Driven Subgrid Stress (DD-SGS) Modeling Functions
4594cc9442bSJames Wright // -----------------------------------------------------------------------------
4604cc9442bSJames Wright 
461731c13d7SJames Wright PetscErrorCode SgsDDSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData problem);
462cbef7084SJames Wright PetscErrorCode SgsDDDataDestroy(SgsDDData sgs_dd_data);
4638f5ab23bSJames Wright PetscErrorCode SgsDDApplyIFunction(User user, const Vec Q_loc, Vec G_loc);
464731c13d7SJames Wright PetscErrorCode VelocityGradientProjectionSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData problem, StateVariable state_var_input,
4657618d7b7SJames Wright                                                CeedElemRestriction elem_restr_input, CeedBasis basis_input, NodalProjectionData *pgrad_velo_proj);
4667618d7b7SJames Wright PetscErrorCode VelocityGradientProjectionApply(NodalProjectionData grad_velo_proj, Vec Q_loc, Vec VelocityGradient);
467052409adSJames Wright PetscErrorCode GridAnisotropyTensorProjectionSetupApply(Ceed ceed, User user, CeedData ceed_data, CeedElemRestriction *elem_restr_grid_aniso,
468052409adSJames Wright                                                         CeedVector *grid_aniso_vector);
469900aec75SJames Wright PetscErrorCode GridAnisotropyTensorCalculateCollocatedVector(Ceed ceed, User user, CeedData ceed_data, CeedElemRestriction *elem_restr_grid_aniso,
470900aec75SJames Wright                                                              CeedVector *aniso_colloc_ceed, PetscInt *num_comp_aniso);
4714cc9442bSJames Wright 
4724cc9442bSJames Wright // -----------------------------------------------------------------------------
473dada6cc0SJames Wright // Boundary Condition Related Functions
474dada6cc0SJames Wright // -----------------------------------------------------------------------------
475dada6cc0SJames Wright 
476dada6cc0SJames Wright // Setup StrongBCs that use QFunctions
477731c13d7SJames Wright PetscErrorCode SetupStrongBC_Ceed(Ceed ceed, CeedData ceed_data, DM dm, User user, ProblemData problem, SimpleBC bc);
478b7c563b6SJeremy L Thompson 
479731c13d7SJames Wright PetscErrorCode FreestreamBCSetup(ProblemData problem, DM dm, void *ctx, NewtonianIdealGasContext newtonian_ig_ctx, const StatePrimitive *reference);
480731c13d7SJames Wright PetscErrorCode OutflowBCSetup(ProblemData problem, DM dm, void *ctx, NewtonianIdealGasContext newtonian_ig_ctx, const StatePrimitive *reference);
481731c13d7SJames Wright PetscErrorCode SlipBCSetup(ProblemData problem, DM dm, void *ctx, CeedQFunctionContext newtonian_ig_qfctx);
4822b730f8bSJeremy L Thompson 
4834e9802d1SJames Wright // -----------------------------------------------------------------------------
4844e9802d1SJames Wright // Differential Filtering Functions
4854e9802d1SJames Wright // -----------------------------------------------------------------------------
4864e9802d1SJames Wright 
487731c13d7SJames Wright PetscErrorCode DifferentialFilterSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData problem);
4884e9802d1SJames Wright PetscErrorCode DifferentialFilterDataDestroy(DiffFilterData diff_filter);
4894e9802d1SJames Wright PetscErrorCode TSMonitor_DifferentialFilter(TS ts, PetscInt steps, PetscReal solution_time, Vec Q, void *ctx);
4904e9802d1SJames Wright PetscErrorCode DifferentialFilterApply(User user, const PetscReal solution_time, const Vec Q, Vec Filtered_Solution);
491731c13d7SJames Wright PetscErrorCode DifferentialFilterMmsICSetup(ProblemData problem);
4924e9802d1SJames Wright 
4938146534cSJames Wright // -----------------------------------------------------------------------------
4948146534cSJames Wright // SGS Data-Driven Training via SmartSim
4958146534cSJames Wright // -----------------------------------------------------------------------------
4968146534cSJames Wright PetscErrorCode SmartSimSetup(User user);
497b306c3f1SJames Wright PetscErrorCode SmartSimDataDestroy(SmartSimData smartsim);
498731c13d7SJames Wright PetscErrorCode SGS_DD_TrainingSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData problem);
499ee3b213aSJames Wright PetscErrorCode TSMonitor_SGS_DD_Training(TS ts, PetscInt step_num, PetscReal solution_time, Vec Q, void *ctx);
5001a7db67cSJames Wright PetscErrorCode TSPostStep_SGS_DD_Training(TS ts);
501ee3b213aSJames Wright PetscErrorCode SGS_DD_TrainingDataDestroy(SGS_DD_TrainingData sgs_dd_train);
502