15aed82e4SJeremy L Thompson // Copyright (c) 2017-2024, Lawrence Livermore National Security, LLC and other CEED contributors. 23d8e8822SJeremy L Thompson // All Rights Reserved. See the top-level LICENSE and NOTICE files for details. 377841947SLeila Ghaffari // 43d8e8822SJeremy L Thompson // SPDX-License-Identifier: BSD-2-Clause 577841947SLeila Ghaffari // 63d8e8822SJeremy L Thompson // This file is part of CEED: http://github.com/ceed 724a65d3dSJeremy L Thompson #pragma once 877841947SLeila Ghaffari 977841947SLeila Ghaffari #include <ceed.h> 1091c97f41SJames Wright #include <mat-ceed.h> 115037d55dSJames Wright #include <petsc-ceed-utils.h> 1277841947SLeila Ghaffari #include <petscts.h> 1377841947SLeila Ghaffari #include <stdbool.h> 142b730f8bSJeremy L Thompson 154021610dSJames Wright #include "./include/petsc_ops.h" 1697baf651SJames Wright #include "qfunctions/newtonian_types.h" 1777841947SLeila Ghaffari 1849a40c8aSKenneth E. Jansen #if PETSC_VERSION_LT(3, 21, 0) 19fd9d666bSJames Wright #error "PETSc v3.21 or later is required" 2049a40c8aSKenneth E. Jansen #endif 2149a40c8aSKenneth E. Jansen 2277841947SLeila Ghaffari // ----------------------------------------------------------------------------- 2377841947SLeila Ghaffari // Enums 2477841947SLeila Ghaffari // ----------------------------------------------------------------------------- 2577841947SLeila Ghaffari 2677841947SLeila Ghaffari // Euler - test cases 2777841947SLeila Ghaffari typedef enum { 28bc7bbd5dSLeila Ghaffari EULER_TEST_ISENTROPIC_VORTEX = 0, 2977841947SLeila Ghaffari EULER_TEST_1 = 1, 3077841947SLeila Ghaffari EULER_TEST_2 = 2, 3177841947SLeila Ghaffari EULER_TEST_3 = 3, 3277841947SLeila Ghaffari EULER_TEST_4 = 4, 3332f166c6SLeila Ghaffari EULER_TEST_5 = 5, 3477841947SLeila Ghaffari } EulerTestType; 352b730f8bSJeremy L Thompson static const char *const EulerTestTypes[] = {"isentropic_vortex", "test_1", "test_2", "test_3", "test_4", "test_5", 362b730f8bSJeremy L Thompson "EulerTestType", "EULER_TEST_", NULL}; 3777841947SLeila Ghaffari 38700ae941SJames Wright // Advection - Wind types 39700ae941SJames Wright static const char *const WindTypes[] = {"rotation", "translation", "WindType", "WIND_", NULL}; 40700ae941SJames Wright 417b77ddfdSJames Wright // Advection - Initial Condition Types 427b77ddfdSJames Wright static const char *const AdvectionICTypes[] = {"sphere", "cylinder", "cosine_hill", "skew", "AdvectionICType", "ADVECTIONIC_", NULL}; 43700ae941SJames Wright 44700ae941SJames Wright // Advection - Bubble Continuity Types 4593639ffbSJames Wright static const char *const BubbleContinuityTypes[] = {"smooth", "back_sharp", "thick", "cosine", "BubbleContinuityType", "BUBBLE_CONTINUITY_", NULL}; 46700ae941SJames Wright 4777841947SLeila Ghaffari // Stabilization methods 482b730f8bSJeremy L Thompson static const char *const StabilizationTypes[] = {"none", "SU", "SUPG", "StabilizationType", "STAB_", NULL}; 4977841947SLeila Ghaffari 50b18328c4SJames Wright // Stabilization tau constants 51b18328c4SJames Wright static const char *const StabilizationTauTypes[] = {"Ctau", "AdvDiff_Shakib", "AdvDiff_Shakib_P", "StabilizationTauType", "STAB_TAU_", NULL}; 52b18328c4SJames Wright 5351b00d91SJames Wright // Test mode type 548fb33541SJames Wright typedef enum { 558fb33541SJames Wright TESTTYPE_NONE = 0, 568fb33541SJames Wright TESTTYPE_SOLVER = 1, 578fb33541SJames Wright TESTTYPE_TURB_SPANSTATS = 2, 58970fa48bSJames Wright TESTTYPE_DIFF_FILTER = 3, 598fb33541SJames Wright } TestType; 60970fa48bSJames Wright static const char *const TestTypes[] = {"none", "solver", "turb_spanstats", "diff_filter", "TestType", "TESTTYPE_", NULL}; 618fb33541SJames Wright 622526956eSJames Wright // Subgrid-Stress mode type 6319ffbc25SJames Wright typedef enum { 6419ffbc25SJames Wright SGS_MODEL_NONE = 0, 6519ffbc25SJames Wright SGS_MODEL_DATA_DRIVEN = 1, 6619ffbc25SJames Wright } SGSModelType; 6719ffbc25SJames Wright static const char *const SGSModelTypes[] = {"none", "data_driven", "SGSModelType", "SGS_MODEL_", NULL}; 6819ffbc25SJames Wright 69*013a5551SJames Wright // Subgrid-Stress mode type 70*013a5551SJames Wright typedef enum { 71*013a5551SJames Wright SGS_MODEL_DD_FUSED = 0, 72*013a5551SJames Wright SGS_MODEL_DD_SEQENTIAL_CEED = 1, 73*013a5551SJames Wright SGS_MODEL_DD_SEQENTIAL_TORCH = 2, 74*013a5551SJames Wright } SGSModelDDImplementation; 75*013a5551SJames Wright static const char *const SGSModelDDImplementations[] = {"fused", "sequential_ceed", "sequential_torch", "SGSModelDDImplementation", "SGS_MODEL_DD_", 76*013a5551SJames Wright NULL}; 77*013a5551SJames Wright 782526956eSJames Wright // Mesh transformation type 792526956eSJames Wright typedef enum { 802526956eSJames Wright MESH_TRANSFORM_NONE = 0, 812526956eSJames Wright MESH_TRANSFORM_PLATEMESH = 1, 822526956eSJames Wright } MeshTransformType; 832526956eSJames Wright static const char *const MeshTransformTypes[] = {"none", "platemesh", "MeshTransformType", "MESH_TRANSFORM_", NULL}; 842526956eSJames Wright 85bd882c8aSJames Wright static const char *const DifferentialFilterDampingFunctions[] = { 86bd882c8aSJames Wright "none", "van_driest", "mms", "DifferentialFilterDampingFunction", "DIFF_FILTER_DAMP_", NULL}; 87bd882c8aSJames Wright 8877841947SLeila Ghaffari // ----------------------------------------------------------------------------- 8975d1798cSJames Wright // Log Events 9075d1798cSJames Wright // ----------------------------------------------------------------------------- 9175d1798cSJames Wright extern PetscLogEvent FLUIDS_CeedOperatorApply; 92844b3d4aSRiccardo Balin extern PetscLogEvent FLUIDS_SmartRedis_Init; 93844b3d4aSRiccardo Balin extern PetscLogEvent FLUIDS_SmartRedis_Meta; 94844b3d4aSRiccardo Balin extern PetscLogEvent FLUIDS_SmartRedis_Train; 95844b3d4aSRiccardo Balin extern PetscLogEvent FLUIDS_TrainDataCompute; 963737f832SJames Wright extern PetscLogEvent FLUIDS_DifferentialFilter; 973737f832SJames Wright extern PetscLogEvent FLUIDS_VelocityGradientProjection; 9875d1798cSJames Wright PetscErrorCode RegisterLogEvents(); 9975d1798cSJames Wright 10075d1798cSJames Wright // ----------------------------------------------------------------------------- 10177841947SLeila Ghaffari // Structs 10277841947SLeila Ghaffari // ----------------------------------------------------------------------------- 10377841947SLeila Ghaffari // Structs declarations 10477841947SLeila Ghaffari typedef struct AppCtx_private *AppCtx; 10577841947SLeila Ghaffari typedef struct CeedData_private *CeedData; 10677841947SLeila Ghaffari typedef struct User_private *User; 10777841947SLeila Ghaffari typedef struct Units_private *Units; 10877841947SLeila Ghaffari typedef struct SimpleBC_private *SimpleBC; 10977841947SLeila Ghaffari typedef struct Physics_private *Physics; 11077841947SLeila Ghaffari 11177841947SLeila Ghaffari // Application context from user command line options 11277841947SLeila Ghaffari struct AppCtx_private { 11377841947SLeila Ghaffari // libCEED arguments 11477841947SLeila Ghaffari char ceed_resource[PETSC_MAX_PATH_LEN]; // libCEED backend 11577841947SLeila Ghaffari PetscInt degree; 11677841947SLeila Ghaffari PetscInt q_extra; 117544be873SJed Brown // Solver arguments 118544be873SJed Brown MatType amat_type; 11977841947SLeila Ghaffari // Post-processing arguments 12037cbb16aSJed Brown PetscInt checkpoint_interval; 12177841947SLeila Ghaffari PetscInt viz_refine; 12277841947SLeila Ghaffari PetscInt cont_steps; 1234de8550aSJed Brown PetscReal cont_time; 12469293791SJames Wright char cont_file[PETSC_MAX_PATH_LEN]; 12569293791SJames Wright char cont_time_file[PETSC_MAX_PATH_LEN]; 12677841947SLeila Ghaffari char output_dir[PETSC_MAX_PATH_LEN]; 12769293791SJames Wright PetscBool add_stepnum2bin; 12837cbb16aSJed Brown PetscBool checkpoint_vtk; 12977841947SLeila Ghaffari // Problem type arguments 13077841947SLeila Ghaffari PetscFunctionList problems; 13177841947SLeila Ghaffari char problem_name[PETSC_MAX_PATH_LEN]; 13277841947SLeila Ghaffari // Test mode arguments 1338fb33541SJames Wright TestType test_type; 13477841947SLeila Ghaffari PetscScalar test_tol; 135b7d66439SJames Wright char test_file_path[PETSC_MAX_PATH_LEN]; 136b7d66439SJames Wright // Turbulent spanwise statistics 137b7d66439SJames Wright PetscBool turb_spanstats_enable; 138b7d66439SJames Wright PetscInt turb_spanstats_collect_interval; 139b7d66439SJames Wright PetscInt turb_spanstats_viewer_interval; 140b7d66439SJames Wright PetscViewer turb_spanstats_viewer; 141b7d66439SJames Wright PetscViewerFormat turb_spanstats_viewer_format; 142ca69d878SAdeleke O. Bankole // Wall forces 143ca69d878SAdeleke O. Bankole struct { 144ca69d878SAdeleke O. Bankole PetscInt num_wall; 145ca69d878SAdeleke O. Bankole PetscInt *walls; 146ca69d878SAdeleke O. Bankole PetscViewer viewer; 147ca69d878SAdeleke O. Bankole PetscViewerFormat viewer_format; 148ca69d878SAdeleke O. Bankole PetscBool header_written; 149ca69d878SAdeleke O. Bankole } wall_forces; 15019ffbc25SJames Wright // Subgrid Stress Model 15119ffbc25SJames Wright SGSModelType sgs_model_type; 15228134cfaSJames Wright PetscBool sgs_train_enable; 1534e9802d1SJames Wright // Differential Filtering 1544e9802d1SJames Wright PetscBool diff_filter_monitor; 1552526956eSJames Wright MeshTransformType mesh_transform_type; 15677841947SLeila Ghaffari }; 15777841947SLeila Ghaffari 15877841947SLeila Ghaffari // libCEED data struct 15977841947SLeila Ghaffari struct CeedData_private { 16077841947SLeila Ghaffari CeedVector x_coord, q_data; 161e9c36be0SJames Wright CeedBasis basis_x, basis_q; 16277841947SLeila Ghaffari CeedElemRestriction elem_restr_x, elem_restr_q, elem_restr_qd_i; 1635263e9c6SJames Wright OperatorApplyContext op_ics_ctx; 16477841947SLeila Ghaffari }; 16577841947SLeila Ghaffari 16651ee423eSJames Wright typedef struct { 16751ee423eSJames Wright DM dm; 1681737222fSJames Wright PetscSF sf; // For communicating child data to parents 169ed331efdSJames Wright OperatorApplyContext op_stats_collect_ctx, op_proj_rhs_ctx; 17051ee423eSJames Wright PetscInt num_comp_stats; 171ed331efdSJames Wright Vec Child_Stats_loc, Parent_Stats_loc; 172a175e481SJames Wright KSP ksp; // For the L^2 projection solve 173a175e481SJames Wright CeedScalar span_width; // spanwise width of the child domain 174b7d66439SJames Wright PetscBool do_mms_test; 1754021610dSJames Wright OperatorApplyContext mms_error_ctx; 176495b9769SJames Wright CeedContextFieldLabel solution_time_label, previous_time_label; 177cbef7084SJames Wright } SpanStatsData; 17851ee423eSJames Wright 179999ff5c7SJames Wright typedef struct { 180999ff5c7SJames Wright DM dm; 181999ff5c7SJames Wright PetscInt num_comp; 182999ff5c7SJames Wright OperatorApplyContext l2_rhs_ctx; 183999ff5c7SJames Wright KSP ksp; 184999ff5c7SJames Wright } *NodalProjectionData; 185999ff5c7SJames Wright 1866b3fb9aeSJames Wright typedef PetscErrorCode (*SgsDDNodalStressEval)(User user, Vec Q_loc, Vec VelocityGradient, Vec SGSNodal_loc); 1871250e899SJames Wright typedef PetscErrorCode (*SgsDDNodalStressInference)(Vec DD_Inputs_loc, Vec DD_Outputs_loc, void *ctx); 1889a17443dSJames Wright typedef struct { 1891250e899SJames Wright DM dm_sgs, dm_dd_inputs, dm_dd_outputs; 1905f5d6789SAlex Lindsay PetscInt num_comp_sgs, num_comp_inputs, num_comp_outputs; 1911250e899SJames Wright OperatorApplyContext op_nodal_evaluation_ctx, op_nodal_dd_inputs_ctx, op_nodal_dd_outputs_ctx, op_sgs_apply_ctx; 1921250e899SJames Wright CeedVector sgs_nodal_ceed, grad_velo_ceed; 1936b3fb9aeSJames Wright SgsDDNodalStressEval sgs_nodal_eval; 1941250e899SJames Wright SgsDDNodalStressInference sgs_nodal_inference; 1951250e899SJames Wright void *sgs_nodal_inference_ctx; 1961250e899SJames Wright PetscErrorCode (*sgs_nodal_inference_ctx_destroy)(void *ctx); 197cbef7084SJames Wright } *SgsDDData; 1989a17443dSJames Wright 1994e9802d1SJames Wright typedef struct { 200ee3b213aSJames Wright DM dm_dd_training; 201c79b0730SJames Wright PetscInt num_comp_dd_inputs, write_data_interval, num_filter_widths; 202c79b0730SJames Wright PetscScalar filter_widths[16]; 203ee3b213aSJames Wright OperatorApplyContext op_training_data_calc_ctx; 204ee3b213aSJames Wright NodalProjectionData filtered_grad_velo_proj; 205ee3b213aSJames Wright size_t training_data_array_dims[2]; 206ee3b213aSJames Wright PetscBool overwrite_training_data; 207ee3b213aSJames Wright } *SGS_DD_TrainingData; 208ee3b213aSJames Wright 209ee3b213aSJames Wright typedef struct { 2104e9802d1SJames Wright DM dm_filter; 21181530087SJames Wright PetscInt num_filtered_fields; 21281530087SJames Wright CeedInt *num_field_components; 213051427eeSJames Wright PetscInt field_prim_state, field_velo_prod; 2144e9802d1SJames Wright OperatorApplyContext op_rhs_ctx; 2154e9802d1SJames Wright KSP ksp; 21656f5e811SJames Wright PetscObjectState X_loc_state; 2172029a677SJames Wright PetscBool do_mms_test; 218c79b0730SJames Wright CeedContextFieldLabel filter_width_scaling_label; 2194e9802d1SJames Wright } *DiffFilterData; 2204e9802d1SJames Wright 2218146534cSJames Wright typedef struct { 2228146534cSJames Wright void *client; 2238146534cSJames Wright char rank_id_name[16]; 2248146534cSJames Wright PetscInt collocated_database_num_ranks; 2258146534cSJames Wright } *SmartSimData; 2268146534cSJames Wright 22777841947SLeila Ghaffari // PETSc user data 22877841947SLeila Ghaffari struct User_private { 22977841947SLeila Ghaffari MPI_Comm comm; 23077841947SLeila Ghaffari DM dm; 23177841947SLeila Ghaffari DM dm_viz; 23277841947SLeila Ghaffari Mat interp_viz; 23377841947SLeila Ghaffari Ceed ceed; 23477841947SLeila Ghaffari Units units; 23504292f7dSJames Wright Vec Q_loc, Q_dot_loc; 23677841947SLeila Ghaffari Physics phys; 23777841947SLeila Ghaffari AppCtx app_ctx; 23891c97f41SJames Wright CeedVector q_ceed, q_dot_ceed, g_ceed, x_ceed; 239a5b0ec6fSJames Wright CeedOperator op_ifunction; 24091c97f41SJames Wright Mat mat_ijacobian; 24104292f7dSJames Wright KSP mass_ksp; 2429ad5e8e4SJames Wright OperatorApplyContext op_rhs_ctx, op_strong_bc_ctx; 24315637395SJames Wright CeedScalar time_bc_set; 244cbef7084SJames Wright SpanStatsData spanstats; 245999ff5c7SJames Wright NodalProjectionData grad_velo_proj; 246cbef7084SJames Wright SgsDDData sgs_dd_data; 2474e9802d1SJames Wright DiffFilterData diff_filter; 2488146534cSJames Wright SmartSimData smartsim; 249ee3b213aSJames Wright SGS_DD_TrainingData sgs_dd_train; 25077841947SLeila Ghaffari }; 25177841947SLeila Ghaffari 25277841947SLeila Ghaffari // Units 25377841947SLeila Ghaffari struct Units_private { 25477841947SLeila Ghaffari // fundamental units 25577841947SLeila Ghaffari PetscScalar meter; 25677841947SLeila Ghaffari PetscScalar kilogram; 25777841947SLeila Ghaffari PetscScalar second; 25877841947SLeila Ghaffari PetscScalar Kelvin; 25977841947SLeila Ghaffari // derived units 26077841947SLeila Ghaffari PetscScalar Pascal; 26177841947SLeila Ghaffari PetscScalar J_per_kg_K; 26277841947SLeila Ghaffari PetscScalar m_per_squared_s; 26377841947SLeila Ghaffari PetscScalar W_per_m_K; 26477841947SLeila Ghaffari PetscScalar Joule; 26577841947SLeila Ghaffari }; 26677841947SLeila Ghaffari 26777841947SLeila Ghaffari // Boundary conditions 26877841947SLeila Ghaffari struct SimpleBC_private { 2692fe7aee7SLeila Ghaffari PetscInt num_wall, // Number of faces with wall BCs 2702fe7aee7SLeila Ghaffari wall_comps[5], // An array of constrained component numbers 2712fe7aee7SLeila Ghaffari num_comps, 2727c5bba50SJames Wright num_symmetry[3], // Number of faces with symmetry BCs 2739f844368SJames Wright num_inflow, num_outflow, num_freestream, num_slip; 2749f844368SJames Wright PetscInt walls[16], symmetries[3][16], inflows[16], outflows[16], freestreams[16], slips[16]; 27577841947SLeila Ghaffari }; 27677841947SLeila Ghaffari 27777841947SLeila Ghaffari // Struct that contains all enums and structs used for the physics of all problems 27877841947SLeila Ghaffari struct Physics_private { 27977841947SLeila Ghaffari PetscBool implicit; 28097baf651SJames Wright StateVariable state_var; 28111436a05SJames Wright CeedContextFieldLabel solution_time_label; 282cd4035ffSJames Wright CeedContextFieldLabel stg_solution_time_label; 28388626eedSJames Wright CeedContextFieldLabel timestep_size_label; 284841e4c73SJed Brown CeedContextFieldLabel ics_time_label; 28577841947SLeila Ghaffari }; 28677841947SLeila Ghaffari 28791e5af17SJed Brown typedef struct { 28891e5af17SJed Brown CeedQFunctionUser qfunction; 28991e5af17SJed Brown const char *qfunction_loc; 290841e4c73SJed Brown CeedQFunctionContext qfunction_context; 29191e5af17SJed Brown } ProblemQFunctionSpec; 29291e5af17SJed Brown 29377841947SLeila Ghaffari // Problem specific data 294731c13d7SJames Wright typedef struct ProblemData_private *ProblemData; 295841e4c73SJed Brown struct ProblemData_private { 296e334ad8fSJed Brown CeedInt dim, q_data_size_vol, q_data_size_sur, jac_data_size_sur; 2971864f1c2SLeila Ghaffari CeedScalar dm_scale; 298cfb075a4SJames Wright ProblemQFunctionSpec ics, apply_vol_rhs, apply_vol_ifunction, apply_vol_ijacobian, apply_inflow, apply_outflow, apply_freestream, apply_slip, 299cfb075a4SJames Wright apply_inflow_jacobian, apply_outflow_jacobian, apply_freestream_jacobian, apply_slip_jacobian; 30077841947SLeila Ghaffari bool non_zero_time; 301752a08a7SJames Wright PetscBool bc_from_ics, use_strong_bc_ceed, uses_newtonian; 302731c13d7SJames Wright PetscErrorCode (*print_info)(User, ProblemData, AppCtx); 303b4e9a8f8SJames Wright PetscErrorCode (*create_mass_operator)(User, CeedOperator *); 304841e4c73SJed Brown }; 30577841947SLeila Ghaffari 306841e4c73SJed Brown extern int FreeContextPetsc(void *); 307841e4c73SJed Brown 30877841947SLeila Ghaffari // ----------------------------------------------------------------------------- 30977841947SLeila Ghaffari // Set up problems 31077841947SLeila Ghaffari // ----------------------------------------------------------------------------- 31177841947SLeila Ghaffari // Set up function for each problem 312731c13d7SJames Wright extern PetscErrorCode NS_TAYLOR_GREEN(ProblemData problem, DM dm, void *ctx, SimpleBC bc); 313731c13d7SJames Wright extern PetscErrorCode NS_GAUSSIAN_WAVE(ProblemData problem, DM dm, void *ctx, SimpleBC bc); 314731c13d7SJames Wright extern PetscErrorCode NS_CHANNEL(ProblemData problem, DM dm, void *ctx, SimpleBC bc); 315731c13d7SJames Wright extern PetscErrorCode NS_BLASIUS(ProblemData problem, DM dm, void *ctx, SimpleBC bc); 316731c13d7SJames Wright extern PetscErrorCode NS_NEWTONIAN_IG(ProblemData problem, DM dm, void *ctx, SimpleBC bc); 317731c13d7SJames Wright extern PetscErrorCode NS_DENSITY_CURRENT(ProblemData problem, DM dm, void *ctx, SimpleBC bc); 318731c13d7SJames Wright extern PetscErrorCode NS_EULER_VORTEX(ProblemData problem, DM dm, void *ctx, SimpleBC bc); 319731c13d7SJames Wright extern PetscErrorCode NS_SHOCKTUBE(ProblemData problem, DM dm, void *ctx, SimpleBC bc); 320731c13d7SJames Wright extern PetscErrorCode NS_ADVECTION(ProblemData problem, DM dm, void *ctx, SimpleBC bc); 321731c13d7SJames Wright extern PetscErrorCode NS_ADVECTION2D(ProblemData problem, DM dm, void *ctx, SimpleBC bc); 32277841947SLeila Ghaffari 32377841947SLeila Ghaffari // Print function for each problem 324731c13d7SJames Wright extern PetscErrorCode PRINT_NEWTONIAN(User user, ProblemData problem, AppCtx app_ctx); 32577841947SLeila Ghaffari 326731c13d7SJames Wright extern PetscErrorCode PRINT_EULER_VORTEX(User user, ProblemData problem, AppCtx app_ctx); 32777841947SLeila Ghaffari 328731c13d7SJames Wright extern PetscErrorCode PRINT_SHOCKTUBE(User user, ProblemData problem, AppCtx app_ctx); 329019b7682STimothy Aiken 330731c13d7SJames Wright extern PetscErrorCode PRINT_ADVECTION(User user, ProblemData problem, AppCtx app_ctx); 33177841947SLeila Ghaffari 332731c13d7SJames Wright extern PetscErrorCode PRINT_ADVECTION2D(User user, ProblemData problem, AppCtx app_ctx); 33377841947SLeila Ghaffari 3347bc7b61fSJames Wright PetscErrorCode PrintRunInfo(User user, Physics phys_ctx, ProblemData problem, TS ts); 3352e31f396SJames Wright 33677841947SLeila Ghaffari // ----------------------------------------------------------------------------- 33777841947SLeila Ghaffari // libCEED functions 33877841947SLeila Ghaffari // ----------------------------------------------------------------------------- 33977841947SLeila Ghaffari // Utility function to create local CEED restriction 340431cd09aSJames Wright PetscErrorCode CreateRestrictionFromPlex(Ceed ceed, DM dm, CeedInt height, DMLabel domain_label, CeedInt label_value, PetscInt dm_field, 341431cd09aSJames Wright CeedElemRestriction *elem_restr); 34277841947SLeila Ghaffari 343bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, PetscInt dm_field, 344bb85d312SJames Wright CeedElemRestriction *restriction); 345bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionCoordinateCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, 346bb85d312SJames Wright CeedElemRestriction *restriction); 347bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionQDataCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, 348bb85d312SJames Wright PetscInt q_data_size, CeedElemRestriction *restriction); 349bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionCollocatedCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, 350bb85d312SJames Wright PetscInt q_data_size, CeedElemRestriction *restriction); 35177841947SLeila Ghaffari 3520814d5a7SKenneth E. Jansen PetscErrorCode CreateBasisFromPlex(Ceed ceed, DM dm, DMLabel domain_label, CeedInt label_value, CeedInt height, CeedInt dm_field, CeedBasis *basis); 3530814d5a7SKenneth E. Jansen 354731c13d7SJames Wright PetscErrorCode SetupLibceed(Ceed ceed, CeedData ceed_data, DM dm, User user, AppCtx app_ctx, ProblemData problem, SimpleBC bc); 35577841947SLeila Ghaffari 356cfb075a4SJames Wright PetscErrorCode QDataGet(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, CeedElemRestriction elem_restr_x, CeedBasis basis_x, 357cfb075a4SJames Wright CeedVector x_coord, CeedElemRestriction *elem_restr_qd, CeedVector *q_data, CeedInt *q_data_size); 358cfb075a4SJames Wright PetscErrorCode QDataGetNumComponents(DM dm, CeedInt *q_data_size); 359cfb075a4SJames Wright PetscErrorCode QDataBoundaryGet(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, CeedElemRestriction elem_restr_x, CeedBasis basis_x, 360cfb075a4SJames Wright CeedVector x_coord, CeedElemRestriction *elem_restr_qd, CeedVector *q_data, CeedInt *q_data_size); 361cfb075a4SJames Wright PetscErrorCode QDataBoundaryGetNumComponents(DM dm, CeedInt *q_data_size); 36277841947SLeila Ghaffari // ----------------------------------------------------------------------------- 36377841947SLeila Ghaffari // Time-stepping functions 36477841947SLeila Ghaffari // ----------------------------------------------------------------------------- 36577841947SLeila Ghaffari // RHS (Explicit time-stepper) function setup 36677841947SLeila Ghaffari PetscErrorCode RHS_NS(TS ts, PetscReal t, Vec Q, Vec G, void *user_data); 36777841947SLeila Ghaffari 36877841947SLeila Ghaffari // Implicit time-stepper function setup 3692b730f8bSJeremy L Thompson PetscErrorCode IFunction_NS(TS ts, PetscReal t, Vec Q, Vec Q_dot, Vec G, void *user_data); 37077841947SLeila Ghaffari 37177841947SLeila Ghaffari // User provided TS Monitor 3722b730f8bSJeremy L Thompson PetscErrorCode TSMonitor_NS(TS ts, PetscInt step_no, PetscReal time, Vec Q, void *ctx); 37377841947SLeila Ghaffari 37477841947SLeila Ghaffari // TS: Create, setup, and solve 37524078fc4SJames Wright PetscErrorCode TSSolve_NS(DM dm, User user, AppCtx app_ctx, Physics phys, ProblemData problem, Vec *Q, PetscScalar *f_time, TS *ts); 37677841947SLeila Ghaffari 377a0b9a424SJames Wright // Update Boundary Values when time has changed 378a0b9a424SJames Wright PetscErrorCode UpdateBoundaryValues(User user, Vec Q_loc, PetscReal t); 379a0b9a424SJames Wright 38077841947SLeila Ghaffari // ----------------------------------------------------------------------------- 38177841947SLeila Ghaffari // Setup DM 38277841947SLeila Ghaffari // ----------------------------------------------------------------------------- 3831864f1c2SLeila Ghaffari // Create mesh 384731c13d7SJames Wright PetscErrorCode CreateDM(MPI_Comm comm, ProblemData problem, MatType, VecType, DM *dm); 38577841947SLeila Ghaffari 38677841947SLeila Ghaffari // Set up DM 387731c13d7SJames Wright PetscErrorCode SetUpDM(DM dm, ProblemData problem, PetscInt degree, PetscInt q_extra, SimpleBC bc, Physics phys); 388d68a66c4SJames Wright PetscErrorCode DMSetupByOrderBegin_FEM(PetscBool setup_faces, PetscBool setup_coords, PetscInt degree, PetscInt coord_order, PetscInt q_extra, 38985df0564SJames Wright PetscInt num_fields, const PetscInt *field_sizes, DM dm); 390d68a66c4SJames Wright PetscErrorCode DMSetupByOrderEnd_FEM(PetscBool setup_coords, DM dm); 391d68a66c4SJames Wright PetscErrorCode DMSetupByOrder_FEM(PetscBool setup_faces, PetscBool setup_coords, PetscInt degree, PetscInt coord_order, PetscInt q_extra, 39285df0564SJames Wright PetscInt num_fields, const PetscInt *field_sizes, DM dm); 39377841947SLeila Ghaffari 39477841947SLeila Ghaffari // Refine DM for high-order viz 395731c13d7SJames Wright PetscErrorCode VizRefineDM(DM dm, User user, ProblemData problem, SimpleBC bc, Physics phys); 39677841947SLeila Ghaffari 39777841947SLeila Ghaffari // ----------------------------------------------------------------------------- 39877841947SLeila Ghaffari // Process command line options 39977841947SLeila Ghaffari // ----------------------------------------------------------------------------- 40077841947SLeila Ghaffari // Register problems to be available on the command line 40177841947SLeila Ghaffari PetscErrorCode RegisterProblems_NS(AppCtx app_ctx); 40277841947SLeila Ghaffari 40377841947SLeila Ghaffari // Process general command line options 4042b730f8bSJeremy L Thompson PetscErrorCode ProcessCommandLineOptions(MPI_Comm comm, AppCtx app_ctx, SimpleBC bc); 40577841947SLeila Ghaffari 40677841947SLeila Ghaffari // ----------------------------------------------------------------------------- 40777841947SLeila Ghaffari // Miscellaneous utility functions 40877841947SLeila Ghaffari // ----------------------------------------------------------------------------- 4093a10b0eeSJames Wright PetscErrorCode GetInverseMultiplicity(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, PetscInt dm_field, 4103a10b0eeSJames Wright PetscBool get_global_multiplicity, CeedElemRestriction *elem_restr_inv_multiplicity, 4113a10b0eeSJames Wright CeedVector *inv_multiplicity); 4122b730f8bSJeremy L Thompson PetscErrorCode ICs_FixMultiplicity(DM dm, CeedData ceed_data, User user, Vec Q_loc, Vec Q, CeedScalar time); 41377841947SLeila Ghaffari 4143c9e7ad1SJames Wright PetscErrorCode DMPlexInsertBoundaryValues_FromICs(DM dm, PetscBool insert_essential, Vec Q_loc, PetscReal time, Vec face_geom_FVM, Vec cell_geom_FVM, 4152b730f8bSJeremy L Thompson Vec grad_FVM); 41677841947SLeila Ghaffari 41777841947SLeila Ghaffari // Compare reference solution values with current test run for CI 4183c9e7ad1SJames Wright PetscErrorCode RegressionTest(AppCtx app_ctx, Vec Q); 41977841947SLeila Ghaffari 42077841947SLeila Ghaffari // Get error for problems with exact solutions 4213c9e7ad1SJames Wright PetscErrorCode PrintError(CeedData ceed_data, DM dm, User user, Vec Q, PetscScalar final_time); 42277841947SLeila Ghaffari 42377841947SLeila Ghaffari // Post-processing 424731c13d7SJames Wright PetscErrorCode PostProcess(TS ts, CeedData ceed_data, DM dm, ProblemData problem, User user, Vec Q, PetscScalar final_time); 42577841947SLeila Ghaffari 42677841947SLeila Ghaffari // -- Gather initial Q values in case of continuation of simulation 42777841947SLeila Ghaffari PetscErrorCode SetupICsFromBinary(MPI_Comm comm, AppCtx app_ctx, Vec Q); 42877841947SLeila Ghaffari 42977841947SLeila Ghaffari // Record boundary values from initial condition 4303c9e7ad1SJames Wright PetscErrorCode SetBCsFromICs(DM dm, Vec Q, Vec Q_loc); 43177841947SLeila Ghaffari 4324de8550aSJed Brown // Versioning token for binary checkpoints 4330de6a49fSJames Wright extern const PetscInt32 FLUIDS_FILE_TOKEN; // for backwards compatibility 4340de6a49fSJames Wright extern const PetscInt32 FLUIDS_FILE_TOKEN_32; 4350de6a49fSJames Wright extern const PetscInt32 FLUIDS_FILE_TOKEN_64; 4364de8550aSJed Brown 437ef080ff9SJames Wright // Create appropriate mass qfunction based on number of components N 438ef080ff9SJames Wright PetscErrorCode CreateMassQFunction(Ceed ceed, CeedInt N, CeedInt q_data_size, CeedQFunction *qf); 439ef080ff9SJames Wright 440999ff5c7SJames Wright PetscErrorCode NodalProjectionDataDestroy(NodalProjectionData context); 441999ff5c7SJames Wright 442cbef7084SJames Wright PetscErrorCode PhastaDatFileOpen(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], const PetscInt char_array_len, PetscInt dims[2], 4438b892a05SJames Wright FILE **fp); 4448b892a05SJames Wright 445cbef7084SJames Wright PetscErrorCode PhastaDatFileGetNRows(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], PetscInt *nrows); 4468b892a05SJames Wright 447cbef7084SJames Wright PetscErrorCode PhastaDatFileReadToArrayReal(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], PetscReal array[]); 4484cc9442bSJames Wright 4498b892a05SJames Wright // ----------------------------------------------------------------------------- 4508b892a05SJames Wright // Turbulence Statistics Collection Functions 4518b892a05SJames Wright // ----------------------------------------------------------------------------- 4528b892a05SJames Wright 453731c13d7SJames Wright PetscErrorCode TurbulenceStatisticsSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData problem); 454f5452247SJames Wright PetscErrorCode TSMonitor_TurbulenceStatistics(TS ts, PetscInt steps, PetscReal solution_time, Vec Q, void *ctx); 455f5452247SJames Wright PetscErrorCode TurbulenceStatisticsDestroy(User user, CeedData ceed_data); 456fd170fd0SJames Wright 45777841947SLeila Ghaffari // ----------------------------------------------------------------------------- 4584cc9442bSJames Wright // Data-Driven Subgrid Stress (DD-SGS) Modeling Functions 4594cc9442bSJames Wright // ----------------------------------------------------------------------------- 4604cc9442bSJames Wright 461731c13d7SJames Wright PetscErrorCode SgsDDSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData problem); 462cbef7084SJames Wright PetscErrorCode SgsDDDataDestroy(SgsDDData sgs_dd_data); 4638f5ab23bSJames Wright PetscErrorCode SgsDDApplyIFunction(User user, const Vec Q_loc, Vec G_loc); 464731c13d7SJames Wright PetscErrorCode VelocityGradientProjectionSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData problem, StateVariable state_var_input, 4657618d7b7SJames Wright CeedElemRestriction elem_restr_input, CeedBasis basis_input, NodalProjectionData *pgrad_velo_proj); 4667618d7b7SJames Wright PetscErrorCode VelocityGradientProjectionApply(NodalProjectionData grad_velo_proj, Vec Q_loc, Vec VelocityGradient); 467052409adSJames Wright PetscErrorCode GridAnisotropyTensorProjectionSetupApply(Ceed ceed, User user, CeedData ceed_data, CeedElemRestriction *elem_restr_grid_aniso, 468052409adSJames Wright CeedVector *grid_aniso_vector); 469900aec75SJames Wright PetscErrorCode GridAnisotropyTensorCalculateCollocatedVector(Ceed ceed, User user, CeedData ceed_data, CeedElemRestriction *elem_restr_grid_aniso, 470900aec75SJames Wright CeedVector *aniso_colloc_ceed, PetscInt *num_comp_aniso); 4714cc9442bSJames Wright 4724cc9442bSJames Wright // ----------------------------------------------------------------------------- 473dada6cc0SJames Wright // Boundary Condition Related Functions 474dada6cc0SJames Wright // ----------------------------------------------------------------------------- 475dada6cc0SJames Wright 476dada6cc0SJames Wright // Setup StrongBCs that use QFunctions 477731c13d7SJames Wright PetscErrorCode SetupStrongBC_Ceed(Ceed ceed, CeedData ceed_data, DM dm, User user, ProblemData problem, SimpleBC bc); 478b7c563b6SJeremy L Thompson 479731c13d7SJames Wright PetscErrorCode FreestreamBCSetup(ProblemData problem, DM dm, void *ctx, NewtonianIdealGasContext newtonian_ig_ctx, const StatePrimitive *reference); 480731c13d7SJames Wright PetscErrorCode OutflowBCSetup(ProblemData problem, DM dm, void *ctx, NewtonianIdealGasContext newtonian_ig_ctx, const StatePrimitive *reference); 481731c13d7SJames Wright PetscErrorCode SlipBCSetup(ProblemData problem, DM dm, void *ctx, CeedQFunctionContext newtonian_ig_qfctx); 4822b730f8bSJeremy L Thompson 4834e9802d1SJames Wright // ----------------------------------------------------------------------------- 4844e9802d1SJames Wright // Differential Filtering Functions 4854e9802d1SJames Wright // ----------------------------------------------------------------------------- 4864e9802d1SJames Wright 487731c13d7SJames Wright PetscErrorCode DifferentialFilterSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData problem); 4884e9802d1SJames Wright PetscErrorCode DifferentialFilterDataDestroy(DiffFilterData diff_filter); 4894e9802d1SJames Wright PetscErrorCode TSMonitor_DifferentialFilter(TS ts, PetscInt steps, PetscReal solution_time, Vec Q, void *ctx); 4904e9802d1SJames Wright PetscErrorCode DifferentialFilterApply(User user, const PetscReal solution_time, const Vec Q, Vec Filtered_Solution); 491731c13d7SJames Wright PetscErrorCode DifferentialFilterMmsICSetup(ProblemData problem); 4924e9802d1SJames Wright 4938146534cSJames Wright // ----------------------------------------------------------------------------- 4948146534cSJames Wright // SGS Data-Driven Training via SmartSim 4958146534cSJames Wright // ----------------------------------------------------------------------------- 4968146534cSJames Wright PetscErrorCode SmartSimSetup(User user); 497b306c3f1SJames Wright PetscErrorCode SmartSimDataDestroy(SmartSimData smartsim); 498731c13d7SJames Wright PetscErrorCode SGS_DD_TrainingSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData problem); 499ee3b213aSJames Wright PetscErrorCode TSMonitor_SGS_DD_Training(TS ts, PetscInt step_num, PetscReal solution_time, Vec Q, void *ctx); 5001a7db67cSJames Wright PetscErrorCode TSPostStep_SGS_DD_Training(TS ts); 501ee3b213aSJames Wright PetscErrorCode SGS_DD_TrainingDataDestroy(SGS_DD_TrainingData sgs_dd_train); 502