15aed82e4SJeremy L Thompson // Copyright (c) 2017-2024, Lawrence Livermore National Security, LLC and other CEED contributors. 23d8e8822SJeremy L Thompson // All Rights Reserved. See the top-level LICENSE and NOTICE files for details. 377841947SLeila Ghaffari // 43d8e8822SJeremy L Thompson // SPDX-License-Identifier: BSD-2-Clause 577841947SLeila Ghaffari // 63d8e8822SJeremy L Thompson // This file is part of CEED: http://github.com/ceed 724a65d3dSJeremy L Thompson #pragma once 877841947SLeila Ghaffari 9d0593705SJames Wright #include <ceed-utils.h> 1077841947SLeila Ghaffari #include <ceed.h> 1191c97f41SJames Wright #include <mat-ceed.h> 1277841947SLeila Ghaffari #include <petscts.h> 1377841947SLeila Ghaffari #include <stdbool.h> 142b730f8bSJeremy L Thompson 154021610dSJames Wright #include "./include/petsc_ops.h" 1697baf651SJames Wright #include "qfunctions/newtonian_types.h" 1777841947SLeila Ghaffari 1849a40c8aSKenneth E. Jansen #if PETSC_VERSION_LT(3, 21, 0) 19fd9d666bSJames Wright #error "PETSc v3.21 or later is required" 2049a40c8aSKenneth E. Jansen #endif 2149a40c8aSKenneth E. Jansen 2277841947SLeila Ghaffari // ----------------------------------------------------------------------------- 2377841947SLeila Ghaffari // Enums 2477841947SLeila Ghaffari // ----------------------------------------------------------------------------- 2577841947SLeila Ghaffari 2677841947SLeila Ghaffari // Euler - test cases 2777841947SLeila Ghaffari typedef enum { 28bc7bbd5dSLeila Ghaffari EULER_TEST_ISENTROPIC_VORTEX = 0, 2977841947SLeila Ghaffari EULER_TEST_1 = 1, 3077841947SLeila Ghaffari EULER_TEST_2 = 2, 3177841947SLeila Ghaffari EULER_TEST_3 = 3, 3277841947SLeila Ghaffari EULER_TEST_4 = 4, 3332f166c6SLeila Ghaffari EULER_TEST_5 = 5, 3477841947SLeila Ghaffari } EulerTestType; 352b730f8bSJeremy L Thompson static const char *const EulerTestTypes[] = {"isentropic_vortex", "test_1", "test_2", "test_3", "test_4", "test_5", 362b730f8bSJeremy L Thompson "EulerTestType", "EULER_TEST_", NULL}; 3777841947SLeila Ghaffari 38700ae941SJames Wright // Advection - Wind types 39700ae941SJames Wright static const char *const WindTypes[] = {"rotation", "translation", "WindType", "WIND_", NULL}; 40700ae941SJames Wright 417b77ddfdSJames Wright // Advection - Initial Condition Types 427b77ddfdSJames Wright static const char *const AdvectionICTypes[] = {"sphere", "cylinder", "cosine_hill", "skew", "AdvectionICType", "ADVECTIONIC_", NULL}; 43700ae941SJames Wright 44700ae941SJames Wright // Advection - Bubble Continuity Types 4593639ffbSJames Wright static const char *const BubbleContinuityTypes[] = {"smooth", "back_sharp", "thick", "cosine", "BubbleContinuityType", "BUBBLE_CONTINUITY_", NULL}; 46700ae941SJames Wright 4777841947SLeila Ghaffari // Stabilization methods 482b730f8bSJeremy L Thompson static const char *const StabilizationTypes[] = {"none", "SU", "SUPG", "StabilizationType", "STAB_", NULL}; 4977841947SLeila Ghaffari 50b18328c4SJames Wright // Stabilization tau constants 51b18328c4SJames Wright static const char *const StabilizationTauTypes[] = {"Ctau", "AdvDiff_Shakib", "AdvDiff_Shakib_P", "StabilizationTauType", "STAB_TAU_", NULL}; 52b18328c4SJames Wright 5351b00d91SJames Wright // Test mode type 548fb33541SJames Wright typedef enum { 558fb33541SJames Wright TESTTYPE_NONE = 0, 568fb33541SJames Wright TESTTYPE_SOLVER = 1, 578fb33541SJames Wright TESTTYPE_TURB_SPANSTATS = 2, 58970fa48bSJames Wright TESTTYPE_DIFF_FILTER = 3, 598fb33541SJames Wright } TestType; 60970fa48bSJames Wright static const char *const TestTypes[] = {"none", "solver", "turb_spanstats", "diff_filter", "TestType", "TESTTYPE_", NULL}; 618fb33541SJames Wright 622526956eSJames Wright // Subgrid-Stress mode type 6319ffbc25SJames Wright typedef enum { 6419ffbc25SJames Wright SGS_MODEL_NONE = 0, 6519ffbc25SJames Wright SGS_MODEL_DATA_DRIVEN = 1, 6619ffbc25SJames Wright } SGSModelType; 6719ffbc25SJames Wright static const char *const SGSModelTypes[] = {"none", "data_driven", "SGSModelType", "SGS_MODEL_", NULL}; 6819ffbc25SJames Wright 692526956eSJames Wright // Mesh transformation type 702526956eSJames Wright typedef enum { 712526956eSJames Wright MESH_TRANSFORM_NONE = 0, 722526956eSJames Wright MESH_TRANSFORM_PLATEMESH = 1, 732526956eSJames Wright } MeshTransformType; 742526956eSJames Wright static const char *const MeshTransformTypes[] = {"none", "platemesh", "MeshTransformType", "MESH_TRANSFORM_", NULL}; 752526956eSJames Wright 76bd882c8aSJames Wright static const char *const DifferentialFilterDampingFunctions[] = { 77bd882c8aSJames Wright "none", "van_driest", "mms", "DifferentialFilterDampingFunction", "DIFF_FILTER_DAMP_", NULL}; 78bd882c8aSJames Wright 7977841947SLeila Ghaffari // ----------------------------------------------------------------------------- 8075d1798cSJames Wright // Log Events 8175d1798cSJames Wright // ----------------------------------------------------------------------------- 8275d1798cSJames Wright extern PetscLogEvent FLUIDS_CeedOperatorApply; 8375d1798cSJames Wright extern PetscLogEvent FLUIDS_CeedOperatorAssemble; 8475d1798cSJames Wright extern PetscLogEvent FLUIDS_CeedOperatorAssembleDiagonal; 8575d1798cSJames Wright extern PetscLogEvent FLUIDS_CeedOperatorAssemblePointBlockDiagonal; 86844b3d4aSRiccardo Balin extern PetscLogEvent FLUIDS_SmartRedis_Init; 87844b3d4aSRiccardo Balin extern PetscLogEvent FLUIDS_SmartRedis_Meta; 88844b3d4aSRiccardo Balin extern PetscLogEvent FLUIDS_SmartRedis_Train; 89844b3d4aSRiccardo Balin extern PetscLogEvent FLUIDS_TrainDataCompute; 903737f832SJames Wright extern PetscLogEvent FLUIDS_DifferentialFilter; 913737f832SJames Wright extern PetscLogEvent FLUIDS_VelocityGradientProjection; 9275d1798cSJames Wright PetscErrorCode RegisterLogEvents(); 9375d1798cSJames Wright 9475d1798cSJames Wright // ----------------------------------------------------------------------------- 9577841947SLeila Ghaffari // Structs 9677841947SLeila Ghaffari // ----------------------------------------------------------------------------- 9777841947SLeila Ghaffari // Structs declarations 9877841947SLeila Ghaffari typedef struct AppCtx_private *AppCtx; 9977841947SLeila Ghaffari typedef struct CeedData_private *CeedData; 10077841947SLeila Ghaffari typedef struct User_private *User; 10177841947SLeila Ghaffari typedef struct Units_private *Units; 10277841947SLeila Ghaffari typedef struct SimpleBC_private *SimpleBC; 10377841947SLeila Ghaffari typedef struct Physics_private *Physics; 10477841947SLeila Ghaffari 10577841947SLeila Ghaffari // Application context from user command line options 10677841947SLeila Ghaffari struct AppCtx_private { 10777841947SLeila Ghaffari // libCEED arguments 10877841947SLeila Ghaffari char ceed_resource[PETSC_MAX_PATH_LEN]; // libCEED backend 10977841947SLeila Ghaffari PetscInt degree; 11077841947SLeila Ghaffari PetscInt q_extra; 111544be873SJed Brown // Solver arguments 112544be873SJed Brown MatType amat_type; 11377841947SLeila Ghaffari // Post-processing arguments 11437cbb16aSJed Brown PetscInt checkpoint_interval; 11577841947SLeila Ghaffari PetscInt viz_refine; 11677841947SLeila Ghaffari PetscInt cont_steps; 1174de8550aSJed Brown PetscReal cont_time; 11869293791SJames Wright char cont_file[PETSC_MAX_PATH_LEN]; 11969293791SJames Wright char cont_time_file[PETSC_MAX_PATH_LEN]; 12077841947SLeila Ghaffari char output_dir[PETSC_MAX_PATH_LEN]; 12169293791SJames Wright PetscBool add_stepnum2bin; 12237cbb16aSJed Brown PetscBool checkpoint_vtk; 12377841947SLeila Ghaffari // Problem type arguments 12477841947SLeila Ghaffari PetscFunctionList problems; 12577841947SLeila Ghaffari char problem_name[PETSC_MAX_PATH_LEN]; 12677841947SLeila Ghaffari // Test mode arguments 1278fb33541SJames Wright TestType test_type; 12877841947SLeila Ghaffari PetscScalar test_tol; 129b7d66439SJames Wright char test_file_path[PETSC_MAX_PATH_LEN]; 130b7d66439SJames Wright // Turbulent spanwise statistics 131b7d66439SJames Wright PetscBool turb_spanstats_enable; 132b7d66439SJames Wright PetscInt turb_spanstats_collect_interval; 133b7d66439SJames Wright PetscInt turb_spanstats_viewer_interval; 134b7d66439SJames Wright PetscViewer turb_spanstats_viewer; 135b7d66439SJames Wright PetscViewerFormat turb_spanstats_viewer_format; 136ca69d878SAdeleke O. Bankole // Wall forces 137ca69d878SAdeleke O. Bankole struct { 138ca69d878SAdeleke O. Bankole PetscInt num_wall; 139ca69d878SAdeleke O. Bankole PetscInt *walls; 140ca69d878SAdeleke O. Bankole PetscViewer viewer; 141ca69d878SAdeleke O. Bankole PetscViewerFormat viewer_format; 142ca69d878SAdeleke O. Bankole PetscBool header_written; 143ca69d878SAdeleke O. Bankole } wall_forces; 14419ffbc25SJames Wright // Subgrid Stress Model 14519ffbc25SJames Wright SGSModelType sgs_model_type; 14628134cfaSJames Wright PetscBool sgs_train_enable; 1474e9802d1SJames Wright // Differential Filtering 1484e9802d1SJames Wright PetscBool diff_filter_monitor; 1492526956eSJames Wright MeshTransformType mesh_transform_type; 15077841947SLeila Ghaffari }; 15177841947SLeila Ghaffari 15277841947SLeila Ghaffari // libCEED data struct 15377841947SLeila Ghaffari struct CeedData_private { 15477841947SLeila Ghaffari CeedVector x_coord, q_data; 155251425b7SJames Wright CeedBasis basis_x, basis_xc, basis_q, basis_x_sur, basis_q_sur; 15677841947SLeila Ghaffari CeedElemRestriction elem_restr_x, elem_restr_q, elem_restr_qd_i; 1575263e9c6SJames Wright CeedOperator op_setup_vol; 1585263e9c6SJames Wright OperatorApplyContext op_ics_ctx; 159d310b3d3SAdeleke O. Bankole CeedQFunction qf_setup_vol, qf_ics, qf_rhs_vol, qf_ifunction_vol, qf_setup_sur, qf_apply_inflow, qf_apply_inflow_jacobian, qf_apply_outflow, 1609f844368SJames Wright qf_apply_outflow_jacobian, qf_apply_freestream, qf_apply_freestream_jacobian, qf_apply_slip, qf_apply_slip_jacobian; 16177841947SLeila Ghaffari }; 16277841947SLeila Ghaffari 16351ee423eSJames Wright typedef struct { 16451ee423eSJames Wright DM dm; 1651737222fSJames Wright PetscSF sf; // For communicating child data to parents 166ed331efdSJames Wright OperatorApplyContext op_stats_collect_ctx, op_proj_rhs_ctx; 16751ee423eSJames Wright PetscInt num_comp_stats; 168ed331efdSJames Wright Vec Child_Stats_loc, Parent_Stats_loc; 169a175e481SJames Wright KSP ksp; // For the L^2 projection solve 170a175e481SJames Wright CeedScalar span_width; // spanwise width of the child domain 171b7d66439SJames Wright PetscBool do_mms_test; 1724021610dSJames Wright OperatorApplyContext mms_error_ctx; 173495b9769SJames Wright CeedContextFieldLabel solution_time_label, previous_time_label; 174cbef7084SJames Wright } SpanStatsData; 17551ee423eSJames Wright 176999ff5c7SJames Wright typedef struct { 177999ff5c7SJames Wright DM dm; 178999ff5c7SJames Wright PetscInt num_comp; 179999ff5c7SJames Wright OperatorApplyContext l2_rhs_ctx; 180999ff5c7SJames Wright KSP ksp; 181999ff5c7SJames Wright } *NodalProjectionData; 182999ff5c7SJames Wright 1836b3fb9aeSJames Wright typedef PetscErrorCode (*SgsDDNodalStressEval)(User user, Vec Q_loc, Vec VelocityGradient, Vec SGSNodal_loc); 1841250e899SJames Wright typedef PetscErrorCode (*SgsDDNodalStressInference)(Vec DD_Inputs_loc, Vec DD_Outputs_loc, void *ctx); 1859a17443dSJames Wright typedef struct { 1861250e899SJames Wright DM dm_sgs, dm_dd_inputs, dm_dd_outputs; 1875f5d6789SAlex Lindsay PetscInt num_comp_sgs, num_comp_inputs, num_comp_outputs; 1881250e899SJames Wright OperatorApplyContext op_nodal_evaluation_ctx, op_nodal_dd_inputs_ctx, op_nodal_dd_outputs_ctx, op_sgs_apply_ctx; 1891250e899SJames Wright CeedVector sgs_nodal_ceed, grad_velo_ceed; 1906b3fb9aeSJames Wright SgsDDNodalStressEval sgs_nodal_eval; 1911250e899SJames Wright SgsDDNodalStressInference sgs_nodal_inference; 1921250e899SJames Wright void *sgs_nodal_inference_ctx; 1931250e899SJames Wright PetscErrorCode (*sgs_nodal_inference_ctx_destroy)(void *ctx); 194cbef7084SJames Wright } *SgsDDData; 1959a17443dSJames Wright 1964e9802d1SJames Wright typedef struct { 197ee3b213aSJames Wright DM dm_dd_training; 198c79b0730SJames Wright PetscInt num_comp_dd_inputs, write_data_interval, num_filter_widths; 199c79b0730SJames Wright PetscScalar filter_widths[16]; 200ee3b213aSJames Wright OperatorApplyContext op_training_data_calc_ctx; 201ee3b213aSJames Wright NodalProjectionData filtered_grad_velo_proj; 202ee3b213aSJames Wright size_t training_data_array_dims[2]; 203ee3b213aSJames Wright PetscBool overwrite_training_data; 204ee3b213aSJames Wright } *SGS_DD_TrainingData; 205ee3b213aSJames Wright 206ee3b213aSJames Wright typedef struct { 2074e9802d1SJames Wright DM dm_filter; 20881530087SJames Wright PetscInt num_filtered_fields; 20981530087SJames Wright CeedInt *num_field_components; 210051427eeSJames Wright PetscInt field_prim_state, field_velo_prod; 2114e9802d1SJames Wright OperatorApplyContext op_rhs_ctx; 2124e9802d1SJames Wright KSP ksp; 21356f5e811SJames Wright PetscObjectState X_loc_state; 2142029a677SJames Wright PetscBool do_mms_test; 215c79b0730SJames Wright CeedContextFieldLabel filter_width_scaling_label; 2164e9802d1SJames Wright } *DiffFilterData; 2174e9802d1SJames Wright 2188146534cSJames Wright typedef struct { 2198146534cSJames Wright void *client; 2208146534cSJames Wright char rank_id_name[16]; 2218146534cSJames Wright PetscInt collocated_database_num_ranks; 2228146534cSJames Wright } *SmartSimData; 2238146534cSJames Wright 22477841947SLeila Ghaffari // PETSc user data 22577841947SLeila Ghaffari struct User_private { 22677841947SLeila Ghaffari MPI_Comm comm; 22777841947SLeila Ghaffari DM dm; 22877841947SLeila Ghaffari DM dm_viz; 22977841947SLeila Ghaffari Mat interp_viz; 23077841947SLeila Ghaffari Ceed ceed; 23177841947SLeila Ghaffari Units units; 23204292f7dSJames Wright Vec Q_loc, Q_dot_loc; 23377841947SLeila Ghaffari Physics phys; 23477841947SLeila Ghaffari AppCtx app_ctx; 23591c97f41SJames Wright CeedVector q_ceed, q_dot_ceed, g_ceed, x_ceed; 23691c97f41SJames Wright CeedOperator op_rhs_vol, op_ifunction_vol, op_ifunction; 23791c97f41SJames Wright Mat mat_ijacobian; 23804292f7dSJames Wright KSP mass_ksp; 2399ad5e8e4SJames Wright OperatorApplyContext op_rhs_ctx, op_strong_bc_ctx; 24015637395SJames Wright CeedScalar time_bc_set; 241cbef7084SJames Wright SpanStatsData spanstats; 242999ff5c7SJames Wright NodalProjectionData grad_velo_proj; 243cbef7084SJames Wright SgsDDData sgs_dd_data; 2444e9802d1SJames Wright DiffFilterData diff_filter; 2458146534cSJames Wright SmartSimData smartsim; 246ee3b213aSJames Wright SGS_DD_TrainingData sgs_dd_train; 24777841947SLeila Ghaffari }; 24877841947SLeila Ghaffari 24977841947SLeila Ghaffari // Units 25077841947SLeila Ghaffari struct Units_private { 25177841947SLeila Ghaffari // fundamental units 25277841947SLeila Ghaffari PetscScalar meter; 25377841947SLeila Ghaffari PetscScalar kilogram; 25477841947SLeila Ghaffari PetscScalar second; 25577841947SLeila Ghaffari PetscScalar Kelvin; 25677841947SLeila Ghaffari // derived units 25777841947SLeila Ghaffari PetscScalar Pascal; 25877841947SLeila Ghaffari PetscScalar J_per_kg_K; 25977841947SLeila Ghaffari PetscScalar m_per_squared_s; 26077841947SLeila Ghaffari PetscScalar W_per_m_K; 26177841947SLeila Ghaffari PetscScalar Joule; 26277841947SLeila Ghaffari }; 26377841947SLeila Ghaffari 26477841947SLeila Ghaffari // Boundary conditions 26577841947SLeila Ghaffari struct SimpleBC_private { 2662fe7aee7SLeila Ghaffari PetscInt num_wall, // Number of faces with wall BCs 2672fe7aee7SLeila Ghaffari wall_comps[5], // An array of constrained component numbers 2682fe7aee7SLeila Ghaffari num_comps, 2697c5bba50SJames Wright num_symmetry[3], // Number of faces with symmetry BCs 2709f844368SJames Wright num_inflow, num_outflow, num_freestream, num_slip; 2719f844368SJames Wright PetscInt walls[16], symmetries[3][16], inflows[16], outflows[16], freestreams[16], slips[16]; 27277841947SLeila Ghaffari }; 27377841947SLeila Ghaffari 27477841947SLeila Ghaffari // Struct that contains all enums and structs used for the physics of all problems 27577841947SLeila Ghaffari struct Physics_private { 27677841947SLeila Ghaffari PetscBool implicit; 27797baf651SJames Wright StateVariable state_var; 27811436a05SJames Wright CeedContextFieldLabel solution_time_label; 279cd4035ffSJames Wright CeedContextFieldLabel stg_solution_time_label; 28088626eedSJames Wright CeedContextFieldLabel timestep_size_label; 281841e4c73SJed Brown CeedContextFieldLabel ics_time_label; 282e334ad8fSJed Brown CeedContextFieldLabel ijacobian_time_shift_label; 28377841947SLeila Ghaffari }; 28477841947SLeila Ghaffari 28591e5af17SJed Brown typedef struct { 28691e5af17SJed Brown CeedQFunctionUser qfunction; 28791e5af17SJed Brown const char *qfunction_loc; 288841e4c73SJed Brown CeedQFunctionContext qfunction_context; 28991e5af17SJed Brown } ProblemQFunctionSpec; 29091e5af17SJed Brown 29177841947SLeila Ghaffari // Problem specific data 292*731c13d7SJames Wright typedef struct ProblemData_private *ProblemData; 293841e4c73SJed Brown struct ProblemData_private { 294e334ad8fSJed Brown CeedInt dim, q_data_size_vol, q_data_size_sur, jac_data_size_sur; 2951864f1c2SLeila Ghaffari CeedScalar dm_scale; 2962b730f8bSJeremy L Thompson ProblemQFunctionSpec setup_vol, setup_sur, ics, apply_vol_rhs, apply_vol_ifunction, apply_vol_ijacobian, apply_inflow, apply_outflow, 2979f844368SJames Wright apply_freestream, apply_slip, apply_inflow_jacobian, apply_outflow_jacobian, apply_freestream_jacobian, apply_slip_jacobian; 29877841947SLeila Ghaffari bool non_zero_time; 299752a08a7SJames Wright PetscBool bc_from_ics, use_strong_bc_ceed, uses_newtonian; 300*731c13d7SJames Wright PetscErrorCode (*print_info)(User, ProblemData, AppCtx); 301b4e9a8f8SJames Wright PetscErrorCode (*create_mass_operator)(User, CeedOperator *); 302841e4c73SJed Brown }; 30377841947SLeila Ghaffari 304841e4c73SJed Brown extern int FreeContextPetsc(void *); 305841e4c73SJed Brown 30677841947SLeila Ghaffari // ----------------------------------------------------------------------------- 30777841947SLeila Ghaffari // Set up problems 30877841947SLeila Ghaffari // ----------------------------------------------------------------------------- 30977841947SLeila Ghaffari // Set up function for each problem 310*731c13d7SJames Wright extern PetscErrorCode NS_TAYLOR_GREEN(ProblemData problem, DM dm, void *ctx, SimpleBC bc); 311*731c13d7SJames Wright extern PetscErrorCode NS_GAUSSIAN_WAVE(ProblemData problem, DM dm, void *ctx, SimpleBC bc); 312*731c13d7SJames Wright extern PetscErrorCode NS_CHANNEL(ProblemData problem, DM dm, void *ctx, SimpleBC bc); 313*731c13d7SJames Wright extern PetscErrorCode NS_BLASIUS(ProblemData problem, DM dm, void *ctx, SimpleBC bc); 314*731c13d7SJames Wright extern PetscErrorCode NS_NEWTONIAN_IG(ProblemData problem, DM dm, void *ctx, SimpleBC bc); 315*731c13d7SJames Wright extern PetscErrorCode NS_DENSITY_CURRENT(ProblemData problem, DM dm, void *ctx, SimpleBC bc); 316*731c13d7SJames Wright extern PetscErrorCode NS_EULER_VORTEX(ProblemData problem, DM dm, void *ctx, SimpleBC bc); 317*731c13d7SJames Wright extern PetscErrorCode NS_SHOCKTUBE(ProblemData problem, DM dm, void *ctx, SimpleBC bc); 318*731c13d7SJames Wright extern PetscErrorCode NS_ADVECTION(ProblemData problem, DM dm, void *ctx, SimpleBC bc); 319*731c13d7SJames Wright extern PetscErrorCode NS_ADVECTION2D(ProblemData problem, DM dm, void *ctx, SimpleBC bc); 32077841947SLeila Ghaffari 32177841947SLeila Ghaffari // Print function for each problem 322*731c13d7SJames Wright extern PetscErrorCode PRINT_NEWTONIAN(User user, ProblemData problem, AppCtx app_ctx); 32377841947SLeila Ghaffari 324*731c13d7SJames Wright extern PetscErrorCode PRINT_EULER_VORTEX(User user, ProblemData problem, AppCtx app_ctx); 32577841947SLeila Ghaffari 326*731c13d7SJames Wright extern PetscErrorCode PRINT_SHOCKTUBE(User user, ProblemData problem, AppCtx app_ctx); 327019b7682STimothy Aiken 328*731c13d7SJames Wright extern PetscErrorCode PRINT_ADVECTION(User user, ProblemData problem, AppCtx app_ctx); 32977841947SLeila Ghaffari 330*731c13d7SJames Wright extern PetscErrorCode PRINT_ADVECTION2D(User user, ProblemData problem, AppCtx app_ctx); 33177841947SLeila Ghaffari 332*731c13d7SJames Wright PetscErrorCode PrintRunInfo(User user, Physics phys_ctx, ProblemData problem, MPI_Comm comm); 3332e31f396SJames Wright 33477841947SLeila Ghaffari // ----------------------------------------------------------------------------- 33577841947SLeila Ghaffari // libCEED functions 33677841947SLeila Ghaffari // ----------------------------------------------------------------------------- 33777841947SLeila Ghaffari // Utility function to create local CEED restriction 338431cd09aSJames Wright PetscErrorCode CreateRestrictionFromPlex(Ceed ceed, DM dm, CeedInt height, DMLabel domain_label, CeedInt label_value, PetscInt dm_field, 339431cd09aSJames Wright CeedElemRestriction *elem_restr); 34077841947SLeila Ghaffari 341bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, PetscInt dm_field, 342bb85d312SJames Wright CeedElemRestriction *restriction); 343bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionCoordinateCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, 344bb85d312SJames Wright CeedElemRestriction *restriction); 345bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionQDataCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, 346bb85d312SJames Wright PetscInt q_data_size, CeedElemRestriction *restriction); 347bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionCollocatedCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, 348bb85d312SJames Wright PetscInt q_data_size, CeedElemRestriction *restriction); 34977841947SLeila Ghaffari 3500814d5a7SKenneth E. Jansen PetscErrorCode CreateBasisFromPlex(Ceed ceed, DM dm, DMLabel domain_label, CeedInt label_value, CeedInt height, CeedInt dm_field, CeedBasis *basis); 3510814d5a7SKenneth E. Jansen 35277841947SLeila Ghaffari // Utility function to create CEED Composite Operator for the entire domain 3532b730f8bSJeremy L Thompson PetscErrorCode CreateOperatorForDomain(Ceed ceed, DM dm, SimpleBC bc, CeedData ceed_data, Physics phys, CeedOperator op_apply_vol, 3542b730f8bSJeremy L Thompson CeedOperator op_apply_ijacobian_vol, CeedInt height, CeedInt P_sur, CeedInt Q_sur, CeedInt q_data_size_sur, 3552b730f8bSJeremy L Thompson CeedInt jac_data_size_sur, CeedOperator *op_apply, CeedOperator *op_apply_ijacobian); 35677841947SLeila Ghaffari 357*731c13d7SJames Wright PetscErrorCode SetupLibceed(Ceed ceed, CeedData ceed_data, DM dm, User user, AppCtx app_ctx, ProblemData problem, SimpleBC bc); 35877841947SLeila Ghaffari 35977841947SLeila Ghaffari // ----------------------------------------------------------------------------- 36077841947SLeila Ghaffari // Time-stepping functions 36177841947SLeila Ghaffari // ----------------------------------------------------------------------------- 36277841947SLeila Ghaffari // RHS (Explicit time-stepper) function setup 36377841947SLeila Ghaffari PetscErrorCode RHS_NS(TS ts, PetscReal t, Vec Q, Vec G, void *user_data); 36477841947SLeila Ghaffari 36577841947SLeila Ghaffari // Implicit time-stepper function setup 3662b730f8bSJeremy L Thompson PetscErrorCode IFunction_NS(TS ts, PetscReal t, Vec Q, Vec Q_dot, Vec G, void *user_data); 36777841947SLeila Ghaffari 36877841947SLeila Ghaffari // User provided TS Monitor 3692b730f8bSJeremy L Thompson PetscErrorCode TSMonitor_NS(TS ts, PetscInt step_no, PetscReal time, Vec Q, void *ctx); 37077841947SLeila Ghaffari 37177841947SLeila Ghaffari // TS: Create, setup, and solve 3722b730f8bSJeremy L Thompson PetscErrorCode TSSolve_NS(DM dm, User user, AppCtx app_ctx, Physics phys, Vec *Q, PetscScalar *f_time, TS *ts); 37377841947SLeila Ghaffari 374a0b9a424SJames Wright // Update Boundary Values when time has changed 375a0b9a424SJames Wright PetscErrorCode UpdateBoundaryValues(User user, Vec Q_loc, PetscReal t); 376a0b9a424SJames Wright 37777841947SLeila Ghaffari // ----------------------------------------------------------------------------- 37877841947SLeila Ghaffari // Setup DM 37977841947SLeila Ghaffari // ----------------------------------------------------------------------------- 3801864f1c2SLeila Ghaffari // Create mesh 381*731c13d7SJames Wright PetscErrorCode CreateDM(MPI_Comm comm, ProblemData problem, MatType, VecType, DM *dm); 38277841947SLeila Ghaffari 38377841947SLeila Ghaffari // Set up DM 384*731c13d7SJames Wright PetscErrorCode SetUpDM(DM dm, ProblemData problem, PetscInt degree, PetscInt q_extra, SimpleBC bc, Physics phys); 385d68a66c4SJames Wright PetscErrorCode DMSetupByOrderBegin_FEM(PetscBool setup_faces, PetscBool setup_coords, PetscInt degree, PetscInt coord_order, PetscInt q_extra, 38685df0564SJames Wright PetscInt num_fields, const PetscInt *field_sizes, DM dm); 387d68a66c4SJames Wright PetscErrorCode DMSetupByOrderEnd_FEM(PetscBool setup_coords, DM dm); 388d68a66c4SJames Wright PetscErrorCode DMSetupByOrder_FEM(PetscBool setup_faces, PetscBool setup_coords, PetscInt degree, PetscInt coord_order, PetscInt q_extra, 38985df0564SJames Wright PetscInt num_fields, const PetscInt *field_sizes, DM dm); 39077841947SLeila Ghaffari 39177841947SLeila Ghaffari // Refine DM for high-order viz 392*731c13d7SJames Wright PetscErrorCode VizRefineDM(DM dm, User user, ProblemData problem, SimpleBC bc, Physics phys); 39377841947SLeila Ghaffari 39477841947SLeila Ghaffari // ----------------------------------------------------------------------------- 39577841947SLeila Ghaffari // Process command line options 39677841947SLeila Ghaffari // ----------------------------------------------------------------------------- 39777841947SLeila Ghaffari // Register problems to be available on the command line 39877841947SLeila Ghaffari PetscErrorCode RegisterProblems_NS(AppCtx app_ctx); 39977841947SLeila Ghaffari 40077841947SLeila Ghaffari // Process general command line options 4012b730f8bSJeremy L Thompson PetscErrorCode ProcessCommandLineOptions(MPI_Comm comm, AppCtx app_ctx, SimpleBC bc); 40277841947SLeila Ghaffari 40377841947SLeila Ghaffari // ----------------------------------------------------------------------------- 40477841947SLeila Ghaffari // Miscellaneous utility functions 40577841947SLeila Ghaffari // ----------------------------------------------------------------------------- 4063a10b0eeSJames Wright PetscErrorCode GetInverseMultiplicity(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, PetscInt dm_field, 4073a10b0eeSJames Wright PetscBool get_global_multiplicity, CeedElemRestriction *elem_restr_inv_multiplicity, 4083a10b0eeSJames Wright CeedVector *inv_multiplicity); 4092b730f8bSJeremy L Thompson PetscErrorCode ICs_FixMultiplicity(DM dm, CeedData ceed_data, User user, Vec Q_loc, Vec Q, CeedScalar time); 41077841947SLeila Ghaffari 4113c9e7ad1SJames Wright PetscErrorCode DMPlexInsertBoundaryValues_FromICs(DM dm, PetscBool insert_essential, Vec Q_loc, PetscReal time, Vec face_geom_FVM, Vec cell_geom_FVM, 4122b730f8bSJeremy L Thompson Vec grad_FVM); 41377841947SLeila Ghaffari 41477841947SLeila Ghaffari // Compare reference solution values with current test run for CI 4153c9e7ad1SJames Wright PetscErrorCode RegressionTest(AppCtx app_ctx, Vec Q); 41677841947SLeila Ghaffari 41777841947SLeila Ghaffari // Get error for problems with exact solutions 4183c9e7ad1SJames Wright PetscErrorCode PrintError(CeedData ceed_data, DM dm, User user, Vec Q, PetscScalar final_time); 41977841947SLeila Ghaffari 42077841947SLeila Ghaffari // Post-processing 421*731c13d7SJames Wright PetscErrorCode PostProcess(TS ts, CeedData ceed_data, DM dm, ProblemData problem, User user, Vec Q, PetscScalar final_time); 42277841947SLeila Ghaffari 42377841947SLeila Ghaffari // -- Gather initial Q values in case of continuation of simulation 42477841947SLeila Ghaffari PetscErrorCode SetupICsFromBinary(MPI_Comm comm, AppCtx app_ctx, Vec Q); 42577841947SLeila Ghaffari 42677841947SLeila Ghaffari // Record boundary values from initial condition 4273c9e7ad1SJames Wright PetscErrorCode SetBCsFromICs(DM dm, Vec Q, Vec Q_loc); 42877841947SLeila Ghaffari 4294de8550aSJed Brown // Versioning token for binary checkpoints 4300de6a49fSJames Wright extern const PetscInt32 FLUIDS_FILE_TOKEN; // for backwards compatibility 4310de6a49fSJames Wright extern const PetscInt32 FLUIDS_FILE_TOKEN_32; 4320de6a49fSJames Wright extern const PetscInt32 FLUIDS_FILE_TOKEN_64; 4334de8550aSJed Brown 434ef080ff9SJames Wright // Create appropriate mass qfunction based on number of components N 435ef080ff9SJames Wright PetscErrorCode CreateMassQFunction(Ceed ceed, CeedInt N, CeedInt q_data_size, CeedQFunction *qf); 436ef080ff9SJames Wright 437999ff5c7SJames Wright PetscErrorCode NodalProjectionDataDestroy(NodalProjectionData context); 438999ff5c7SJames Wright 439cbef7084SJames Wright PetscErrorCode PhastaDatFileOpen(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], const PetscInt char_array_len, PetscInt dims[2], 4408b892a05SJames Wright FILE **fp); 4418b892a05SJames Wright 442cbef7084SJames Wright PetscErrorCode PhastaDatFileGetNRows(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], PetscInt *nrows); 4438b892a05SJames Wright 444cbef7084SJames Wright PetscErrorCode PhastaDatFileReadToArrayReal(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], PetscReal array[]); 4454cc9442bSJames Wright 4468b892a05SJames Wright // ----------------------------------------------------------------------------- 4478b892a05SJames Wright // Turbulence Statistics Collection Functions 4488b892a05SJames Wright // ----------------------------------------------------------------------------- 4498b892a05SJames Wright 450*731c13d7SJames Wright PetscErrorCode TurbulenceStatisticsSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData problem); 451f5452247SJames Wright PetscErrorCode TSMonitor_TurbulenceStatistics(TS ts, PetscInt steps, PetscReal solution_time, Vec Q, void *ctx); 452f5452247SJames Wright PetscErrorCode TurbulenceStatisticsDestroy(User user, CeedData ceed_data); 453fd170fd0SJames Wright 45477841947SLeila Ghaffari // ----------------------------------------------------------------------------- 4554cc9442bSJames Wright // Data-Driven Subgrid Stress (DD-SGS) Modeling Functions 4564cc9442bSJames Wright // ----------------------------------------------------------------------------- 4574cc9442bSJames Wright 458*731c13d7SJames Wright PetscErrorCode SgsDDSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData problem); 459cbef7084SJames Wright PetscErrorCode SgsDDDataDestroy(SgsDDData sgs_dd_data); 4608f5ab23bSJames Wright PetscErrorCode SgsDDApplyIFunction(User user, const Vec Q_loc, Vec G_loc); 461*731c13d7SJames Wright PetscErrorCode VelocityGradientProjectionSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData problem, StateVariable state_var_input, 4627618d7b7SJames Wright CeedElemRestriction elem_restr_input, CeedBasis basis_input, NodalProjectionData *pgrad_velo_proj); 4637618d7b7SJames Wright PetscErrorCode VelocityGradientProjectionApply(NodalProjectionData grad_velo_proj, Vec Q_loc, Vec VelocityGradient); 464052409adSJames Wright PetscErrorCode GridAnisotropyTensorProjectionSetupApply(Ceed ceed, User user, CeedData ceed_data, CeedElemRestriction *elem_restr_grid_aniso, 465052409adSJames Wright CeedVector *grid_aniso_vector); 466900aec75SJames Wright PetscErrorCode GridAnisotropyTensorCalculateCollocatedVector(Ceed ceed, User user, CeedData ceed_data, CeedElemRestriction *elem_restr_grid_aniso, 467900aec75SJames Wright CeedVector *aniso_colloc_ceed, PetscInt *num_comp_aniso); 4684cc9442bSJames Wright 4694cc9442bSJames Wright // ----------------------------------------------------------------------------- 470dada6cc0SJames Wright // Boundary Condition Related Functions 471dada6cc0SJames Wright // ----------------------------------------------------------------------------- 472dada6cc0SJames Wright 473dada6cc0SJames Wright // Setup StrongBCs that use QFunctions 474*731c13d7SJames Wright PetscErrorCode SetupStrongBC_Ceed(Ceed ceed, CeedData ceed_data, DM dm, User user, ProblemData problem, SimpleBC bc); 475b7c563b6SJeremy L Thompson 476*731c13d7SJames Wright PetscErrorCode FreestreamBCSetup(ProblemData problem, DM dm, void *ctx, NewtonianIdealGasContext newtonian_ig_ctx, const StatePrimitive *reference); 477*731c13d7SJames Wright PetscErrorCode OutflowBCSetup(ProblemData problem, DM dm, void *ctx, NewtonianIdealGasContext newtonian_ig_ctx, const StatePrimitive *reference); 478*731c13d7SJames Wright PetscErrorCode SlipBCSetup(ProblemData problem, DM dm, void *ctx, CeedQFunctionContext newtonian_ig_qfctx); 4792b730f8bSJeremy L Thompson 4804e9802d1SJames Wright // ----------------------------------------------------------------------------- 4814e9802d1SJames Wright // Differential Filtering Functions 4824e9802d1SJames Wright // ----------------------------------------------------------------------------- 4834e9802d1SJames Wright 484*731c13d7SJames Wright PetscErrorCode DifferentialFilterSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData problem); 4854e9802d1SJames Wright PetscErrorCode DifferentialFilterDataDestroy(DiffFilterData diff_filter); 4864e9802d1SJames Wright PetscErrorCode TSMonitor_DifferentialFilter(TS ts, PetscInt steps, PetscReal solution_time, Vec Q, void *ctx); 4874e9802d1SJames Wright PetscErrorCode DifferentialFilterApply(User user, const PetscReal solution_time, const Vec Q, Vec Filtered_Solution); 488*731c13d7SJames Wright PetscErrorCode DifferentialFilterMmsICSetup(ProblemData problem); 4894e9802d1SJames Wright 4908146534cSJames Wright // ----------------------------------------------------------------------------- 4918146534cSJames Wright // SGS Data-Driven Training via SmartSim 4928146534cSJames Wright // ----------------------------------------------------------------------------- 4938146534cSJames Wright PetscErrorCode SmartSimSetup(User user); 494b306c3f1SJames Wright PetscErrorCode SmartSimDataDestroy(SmartSimData smartsim); 495*731c13d7SJames Wright PetscErrorCode SGS_DD_TrainingSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData problem); 496ee3b213aSJames Wright PetscErrorCode TSMonitor_SGS_DD_Training(TS ts, PetscInt step_num, PetscReal solution_time, Vec Q, void *ctx); 4971a7db67cSJames Wright PetscErrorCode TSPostStep_SGS_DD_Training(TS ts); 498ee3b213aSJames Wright PetscErrorCode SGS_DD_TrainingDataDestroy(SGS_DD_TrainingData sgs_dd_train); 499