1ba6664aeSJames Wright // Copyright (c) 2017-2022, Lawrence Livermore National Security, LLC and other CEED contributors. 2ba6664aeSJames Wright // All Rights Reserved. See the top-level LICENSE and NOTICE files for details. 3ba6664aeSJames Wright // 4ba6664aeSJames Wright // SPDX-License-Identifier: BSD-2-Clause 5ba6664aeSJames Wright // 6ba6664aeSJames Wright // This file is part of CEED: http://github.com/ceed 7ba6664aeSJames Wright 8ba6664aeSJames Wright /// @file 9ba6664aeSJames Wright /// Implementation of the Synthetic Turbulence Generation (STG) algorithm 10ba6664aeSJames Wright /// presented in Shur et al. 2014 11ba6664aeSJames Wright 12ba6664aeSJames Wright #include <stdlib.h> 13ba6664aeSJames Wright #include <math.h> 14ba6664aeSJames Wright #include <petsc.h> 15ba6664aeSJames Wright #include "../navierstokes.h" 16ba6664aeSJames Wright #include "stg_shur14.h" 17ba6664aeSJames Wright #include "../qfunctions/stg_shur14.h" 18ba6664aeSJames Wright 1965dd5cafSJames Wright STGShur14Context global_stg_ctx; 2065dd5cafSJames Wright 21ba6664aeSJames Wright /* 22ba6664aeSJames Wright * @brief Perform Cholesky decomposition on array of symmetric 3x3 matrices 23ba6664aeSJames Wright * 24ba6664aeSJames Wright * This assumes the input matrices are in order [11,22,33,12,13,23]. This 25ba6664aeSJames Wright * format is also used for the output. 26ba6664aeSJames Wright * 27ba6664aeSJames Wright * @param[in] comm MPI_Comm 28ba6664aeSJames Wright * @param[in] nprofs Number of matrices in Rij 29ba6664aeSJames Wright * @param[in] Rij Array of the symmetric matrices [6,nprofs] 30ba6664aeSJames Wright * @param[out] Cij Array of the Cholesky Decomposition matrices, [6,nprofs] 31ba6664aeSJames Wright */ 32ba6664aeSJames Wright PetscErrorCode CalcCholeskyDecomp(MPI_Comm comm, PetscInt nprofs, 33ba6664aeSJames Wright const CeedScalar Rij[6][nprofs], CeedScalar Cij[6][nprofs]) { 34ba6664aeSJames Wright PetscFunctionBeginUser; 35ba6664aeSJames Wright for (PetscInt i=0; i<nprofs; i++) { 36ba6664aeSJames Wright Cij[0][i] = sqrt(Rij[0][i]); 37ba6664aeSJames Wright Cij[3][i] = Rij[3][i] / Cij[0][i]; 38ba6664aeSJames Wright Cij[1][i] = sqrt(Rij[1][i] - pow(Cij[3][i], 2) ); 39ba6664aeSJames Wright Cij[4][i] = Rij[4][i] / Cij[0][i]; 40ba6664aeSJames Wright Cij[5][i] = (Rij[5][i] - Cij[3][i]*Cij[4][i]) / Cij[1][i]; 41ba6664aeSJames Wright Cij[2][i] = sqrt(Rij[2][i] - pow(Cij[4][i], 2) - pow(Cij[5][i], 2)); 42ba6664aeSJames Wright 43ba6664aeSJames Wright if (isnan(Cij[0][i]) || isnan(Cij[1][i]) || isnan(Cij[2][i])) 44990fdeb6SJeremy L Thompson SETERRQ(comm, -1, "Cholesky decomposition failed at profile point %" 45990fdeb6SJeremy L Thompson PetscInt_FMT ". Either STGInflow has non-SPD matrix or contains nan.", i+1); 46ba6664aeSJames Wright } 47ba6664aeSJames Wright PetscFunctionReturn(0); 48ba6664aeSJames Wright } 49ba6664aeSJames Wright 50ba6664aeSJames Wright 51ba6664aeSJames Wright /* 52ba6664aeSJames Wright * @brief Open a PHASTA *.dat file, grabbing dimensions and file pointer 53ba6664aeSJames Wright * 54ba6664aeSJames Wright * This function opens the file specified by `path` using `PetscFOpen` and 55ba6664aeSJames Wright * passes the file pointer in `fp`. It is not closed in this function, thus 56ba6664aeSJames Wright * `fp` must be closed sometime after this function has been called (using 57ba6664aeSJames Wright * `PetscFClose` for example). 58ba6664aeSJames Wright * 59ba6664aeSJames Wright * Assumes that the first line of the file has the number of rows and columns 60ba6664aeSJames Wright * as the only two entries, separated by a single space 61ba6664aeSJames Wright * 62ba6664aeSJames Wright * @param[in] comm MPI_Comm for the program 63ba6664aeSJames Wright * @param[in] path Path to the file 64ba6664aeSJames Wright * @param[in] char_array_len Length of the character array that should contain each line 65ba6664aeSJames Wright * @param[out] dims Dimensions of the file, taken from the first line of the file 66ba6664aeSJames Wright * @param[out] fp File pointer to the opened file 67ba6664aeSJames Wright */ 68ba6664aeSJames Wright static PetscErrorCode OpenPHASTADatFile(const MPI_Comm comm, 69ba6664aeSJames Wright const char path[PETSC_MAX_PATH_LEN], const PetscInt char_array_len, 70ba6664aeSJames Wright PetscInt dims[2], FILE **fp) { 71ba6664aeSJames Wright PetscInt ndims; 72ba6664aeSJames Wright char line[char_array_len]; 73ba6664aeSJames Wright char **array; 74ba6664aeSJames Wright 75ba6664aeSJames Wright PetscFunctionBeginUser; 76*24941a69SJames Wright PetscCall(PetscFOpen(comm, path, "r", fp)); 77*24941a69SJames Wright PetscCall(PetscSynchronizedFGets(comm, *fp, char_array_len, line)); 78*24941a69SJames Wright PetscCall(PetscStrToArray(line, ' ', &ndims, &array)); 79ba6664aeSJames Wright if (ndims != 2) SETERRQ(comm, -1, 80990fdeb6SJeremy L Thompson "Found %" PetscInt_FMT" dimensions instead of 2 on the first line of %s", 81ba6664aeSJames Wright ndims, path); 82ba6664aeSJames Wright 83ba6664aeSJames Wright for (PetscInt i=0; i<ndims; i++) dims[i] = atoi(array[i]); 84*24941a69SJames Wright PetscCall(PetscStrToArrayDestroy(ndims, array)); 85ba6664aeSJames Wright PetscFunctionReturn(0); 86ba6664aeSJames Wright } 87ba6664aeSJames Wright 88ba6664aeSJames Wright /* 89ba6664aeSJames Wright * @brief Get the number of rows for the PHASTA file at path 90ba6664aeSJames Wright * 91ba6664aeSJames Wright * Assumes that the first line of the file has the number of rows and columns 92ba6664aeSJames Wright * as the only two entries, separated by a single space 93ba6664aeSJames Wright * 94ba6664aeSJames Wright * @param[in] comm MPI_Comm for the program 95ba6664aeSJames Wright * @param[in] path Path to the file 96ba6664aeSJames Wright * @param[out] nrows Number of rows 97ba6664aeSJames Wright */ 98ba6664aeSJames Wright static PetscErrorCode GetNRows(const MPI_Comm comm, 99ba6664aeSJames Wright const char path[PETSC_MAX_PATH_LEN], PetscInt *nrows) { 100ba6664aeSJames Wright const PetscInt char_array_len = 512; 101ba6664aeSJames Wright PetscInt dims[2]; 102ba6664aeSJames Wright FILE *fp; 103ba6664aeSJames Wright 104ba6664aeSJames Wright PetscFunctionBeginUser; 105*24941a69SJames Wright PetscCall(OpenPHASTADatFile(comm, path, char_array_len, dims, &fp)); 106ba6664aeSJames Wright *nrows = dims[0]; 107*24941a69SJames Wright PetscCall(PetscFClose(comm, fp)); 108ba6664aeSJames Wright PetscFunctionReturn(0); 109ba6664aeSJames Wright } 110ba6664aeSJames Wright 111ba6664aeSJames Wright /* 112ba6664aeSJames Wright * @brief Read the STGInflow file and load the contents into stg_ctx 113ba6664aeSJames Wright * 114ba6664aeSJames Wright * Assumes that the first line of the file has the number of rows and columns 115ba6664aeSJames Wright * as the only two entries, separated by a single space. 116ba6664aeSJames Wright * Assumes there are 14 columns in the file 117ba6664aeSJames Wright * 118ba6664aeSJames Wright * Function calculates the Cholesky decomposition from the Reynolds stress 119ba6664aeSJames Wright * profile found in the file 120ba6664aeSJames Wright * 121ba6664aeSJames Wright * @param[in] comm MPI_Comm for the program 122ba6664aeSJames Wright * @param[in] path Path to the STGInflow.dat file 123ba6664aeSJames Wright * @param[inout] stg_ctx STGShur14Context where the data will be loaded into 124ba6664aeSJames Wright */ 125ba6664aeSJames Wright static PetscErrorCode ReadSTGInflow(const MPI_Comm comm, 126ba6664aeSJames Wright const char path[PETSC_MAX_PATH_LEN], STGShur14Context stg_ctx) { 127ba6664aeSJames Wright PetscInt ndims, dims[2]; 128ba6664aeSJames Wright FILE *fp; 129ba6664aeSJames Wright const PetscInt char_array_len=512; 130ba6664aeSJames Wright char line[char_array_len]; 131ba6664aeSJames Wright char **array; 132ba6664aeSJames Wright 133ba6664aeSJames Wright PetscFunctionBeginUser; 134ba6664aeSJames Wright 135*24941a69SJames Wright PetscCall(OpenPHASTADatFile(comm, path, char_array_len, dims, &fp)); 136ba6664aeSJames Wright 137ba6664aeSJames Wright CeedScalar rij[6][stg_ctx->nprofs]; 138175f00a6SJames Wright CeedScalar *wall_dist = &stg_ctx->data[stg_ctx->offsets.wall_dist]; 139ba6664aeSJames Wright CeedScalar *eps = &stg_ctx->data[stg_ctx->offsets.eps]; 140ba6664aeSJames Wright CeedScalar *lt = &stg_ctx->data[stg_ctx->offsets.lt]; 141ba6664aeSJames Wright CeedScalar (*ubar)[stg_ctx->nprofs] = (CeedScalar (*)[stg_ctx->nprofs]) 142ba6664aeSJames Wright &stg_ctx->data[stg_ctx->offsets.ubar]; 143ba6664aeSJames Wright 144ba6664aeSJames Wright for (PetscInt i=0; i<stg_ctx->nprofs; i++) { 145*24941a69SJames Wright PetscCall(PetscSynchronizedFGets(comm, fp, char_array_len, line)); 146*24941a69SJames Wright PetscCall(PetscStrToArray(line, ' ', &ndims, &array)); 147ba6664aeSJames Wright if (ndims < dims[1]) SETERRQ(comm, -1, 148990fdeb6SJeremy L Thompson "Line %" PetscInt_FMT" of %s does not contain enough columns (%" 149990fdeb6SJeremy L Thompson PetscInt_FMT" instead of %" PetscInt_FMT")", i, 150ba6664aeSJames Wright path, ndims, dims[1]); 151ba6664aeSJames Wright 152175f00a6SJames Wright wall_dist[i] = (CeedScalar) atof(array[0]); 153ba6664aeSJames Wright ubar[0][i] = (CeedScalar) atof(array[1]); 154ba6664aeSJames Wright ubar[1][i] = (CeedScalar) atof(array[2]); 155ba6664aeSJames Wright ubar[2][i] = (CeedScalar) atof(array[3]); 156ba6664aeSJames Wright rij[0][i] = (CeedScalar) atof(array[4]); 157ba6664aeSJames Wright rij[1][i] = (CeedScalar) atof(array[5]); 158ba6664aeSJames Wright rij[2][i] = (CeedScalar) atof(array[6]); 159ba6664aeSJames Wright rij[3][i] = (CeedScalar) atof(array[7]); 160ba6664aeSJames Wright rij[4][i] = (CeedScalar) atof(array[8]); 161ba6664aeSJames Wright rij[5][i] = (CeedScalar) atof(array[9]); 162ba6664aeSJames Wright lt[i] = (CeedScalar) atof(array[12]); 163ba6664aeSJames Wright eps[i] = (CeedScalar) atof(array[13]); 164ba6664aeSJames Wright 165175f00a6SJames Wright if (wall_dist[i] < 0) SETERRQ(comm, -1, 166ba6664aeSJames Wright "Distance to wall in %s cannot be negative", path); 167ba6664aeSJames Wright if (lt[i] < 0) SETERRQ(comm, -1, 168ba6664aeSJames Wright "Turbulent length scale in %s cannot be negative", path); 169ba6664aeSJames Wright if (eps[i] < 0) SETERRQ(comm, -1, 170ba6664aeSJames Wright "Turbulent dissipation in %s cannot be negative", path); 171ba6664aeSJames Wright 172ba6664aeSJames Wright } 173ba6664aeSJames Wright CeedScalar (*cij)[stg_ctx->nprofs] = (CeedScalar (*)[stg_ctx->nprofs]) 174ba6664aeSJames Wright &stg_ctx->data[stg_ctx->offsets.cij]; 175*24941a69SJames Wright PetscCall(CalcCholeskyDecomp(comm, stg_ctx->nprofs, rij, cij)); 176*24941a69SJames Wright PetscCall(PetscFClose(comm, fp)); 177ba6664aeSJames Wright PetscFunctionReturn(0); 178ba6664aeSJames Wright } 179ba6664aeSJames Wright 180ba6664aeSJames Wright /* 181ba6664aeSJames Wright * @brief Read the STGRand file and load the contents into stg_ctx 182ba6664aeSJames Wright * 183ba6664aeSJames Wright * Assumes that the first line of the file has the number of rows and columns 184ba6664aeSJames Wright * as the only two entries, separated by a single space. 185ba6664aeSJames Wright * Assumes there are 7 columns in the file 186ba6664aeSJames Wright * 187ba6664aeSJames Wright * @param[in] comm MPI_Comm for the program 188ba6664aeSJames Wright * @param[in] path Path to the STGRand.dat file 189ba6664aeSJames Wright * @param[inout] stg_ctx STGShur14Context where the data will be loaded into 190ba6664aeSJames Wright */ 191ba6664aeSJames Wright static PetscErrorCode ReadSTGRand(const MPI_Comm comm, 192ba6664aeSJames Wright const char path[PETSC_MAX_PATH_LEN], 193ba6664aeSJames Wright STGShur14Context stg_ctx) { 194ba6664aeSJames Wright PetscInt ndims, dims[2]; 195ba6664aeSJames Wright FILE *fp; 196ba6664aeSJames Wright const PetscInt char_array_len = 512; 197ba6664aeSJames Wright char line[char_array_len]; 198ba6664aeSJames Wright char **array; 199ba6664aeSJames Wright 200ba6664aeSJames Wright PetscFunctionBeginUser; 201*24941a69SJames Wright PetscCall(OpenPHASTADatFile(comm, path, char_array_len, dims, &fp)); 202ba6664aeSJames Wright 203ba6664aeSJames Wright CeedScalar *phi = &stg_ctx->data[stg_ctx->offsets.phi]; 204ba6664aeSJames Wright CeedScalar (*d)[stg_ctx->nmodes] = (CeedScalar (*)[stg_ctx->nmodes]) 205ba6664aeSJames Wright &stg_ctx->data[stg_ctx->offsets.d]; 206ba6664aeSJames Wright CeedScalar (*sigma)[stg_ctx->nmodes] = (CeedScalar (*)[stg_ctx->nmodes]) 207ba6664aeSJames Wright &stg_ctx->data[stg_ctx->offsets.sigma]; 208ba6664aeSJames Wright 209ba6664aeSJames Wright for (PetscInt i=0; i<stg_ctx->nmodes; i++) { 210*24941a69SJames Wright PetscCall(PetscSynchronizedFGets(comm, fp, char_array_len, line)); 211*24941a69SJames Wright PetscCall(PetscStrToArray(line, ' ', &ndims, &array)); 212ba6664aeSJames Wright if (ndims < dims[1]) SETERRQ(comm, -1, 213990fdeb6SJeremy L Thompson "Line %" PetscInt_FMT" of %s does not contain enough columns (%" 214990fdeb6SJeremy L Thompson PetscInt_FMT" instead of %" PetscInt_FMT")", i, 215ba6664aeSJames Wright path, ndims, dims[1]); 216ba6664aeSJames Wright 217ba6664aeSJames Wright d[0][i] = (CeedScalar) atof(array[0]); 218ba6664aeSJames Wright d[1][i] = (CeedScalar) atof(array[1]); 219ba6664aeSJames Wright d[2][i] = (CeedScalar) atof(array[2]); 220ba6664aeSJames Wright phi[i] = (CeedScalar) atof(array[3]); 221ba6664aeSJames Wright sigma[0][i] = (CeedScalar) atof(array[4]); 222ba6664aeSJames Wright sigma[1][i] = (CeedScalar) atof(array[5]); 223ba6664aeSJames Wright sigma[2][i] = (CeedScalar) atof(array[6]); 224ba6664aeSJames Wright } 225*24941a69SJames Wright PetscCall(PetscFClose(comm, fp)); 226ba6664aeSJames Wright PetscFunctionReturn(0); 227ba6664aeSJames Wright } 228ba6664aeSJames Wright 229ba6664aeSJames Wright /* 230ba6664aeSJames Wright * @brief Read STG data from input paths and put in STGShur14Context 231ba6664aeSJames Wright * 232ba6664aeSJames Wright * Reads data from input paths and puts them into a STGShur14Context object. 233ba6664aeSJames Wright * Data stored initially in `*pstg_ctx` will be copied over to the new 234ba6664aeSJames Wright * STGShur14Context instance. 235ba6664aeSJames Wright * 236ba6664aeSJames Wright * @param[in] comm MPI_Comm for the program 237ba6664aeSJames Wright * @param[in] dm DM for the program 238ba6664aeSJames Wright * @param[in] stg_inflow_path Path to STGInflow.dat file 239ba6664aeSJames Wright * @param[in] stg_rand_path Path to STGRand.dat file 240ba6664aeSJames Wright * @param[inout] pstg_ctx Pointer to STGShur14Context where the data will be loaded into 241ba6664aeSJames Wright */ 242ba6664aeSJames Wright PetscErrorCode GetSTGContextData(const MPI_Comm comm, const DM dm, 243ba6664aeSJames Wright char stg_inflow_path[PETSC_MAX_PATH_LEN], 244ba6664aeSJames Wright char stg_rand_path[PETSC_MAX_PATH_LEN], 2454e139266SJames Wright STGShur14Context *pstg_ctx, 2464e139266SJames Wright const CeedScalar ynodes[]) { 247ba6664aeSJames Wright PetscInt nmodes, nprofs; 248ba6664aeSJames Wright STGShur14Context stg_ctx; 249ba6664aeSJames Wright PetscFunctionBeginUser; 250ba6664aeSJames Wright 251ba6664aeSJames Wright // Get options 252*24941a69SJames Wright PetscCall(GetNRows(comm, stg_rand_path, &nmodes)); 253*24941a69SJames Wright PetscCall(GetNRows(comm, stg_inflow_path, &nprofs)); 254ba6664aeSJames Wright if (nmodes > STG_NMODES_MAX) 255990fdeb6SJeremy L Thompson SETERRQ(comm, 1, "Number of wavemodes in %s (%" 256990fdeb6SJeremy L Thompson PetscInt_FMT") exceeds STG_NMODES_MAX (%" PetscInt_FMT"). " 257ba6664aeSJames Wright "Change size of STG_NMODES_MAX and recompile", stg_rand_path, nmodes, 258ba6664aeSJames Wright STG_NMODES_MAX); 259ba6664aeSJames Wright 260ba6664aeSJames Wright { 261ba6664aeSJames Wright STGShur14Context s; 262*24941a69SJames Wright PetscCall(PetscCalloc1(1, &s)); 263ba6664aeSJames Wright *s = **pstg_ctx; 264ba6664aeSJames Wright s->nmodes = nmodes; 265ba6664aeSJames Wright s->nprofs = nprofs; 266ba6664aeSJames Wright s->offsets.sigma = 0; 267ba6664aeSJames Wright s->offsets.d = nmodes*3; 268ba6664aeSJames Wright s->offsets.phi = s->offsets.d + nmodes*3; 269ba6664aeSJames Wright s->offsets.kappa = s->offsets.phi + nmodes; 270175f00a6SJames Wright s->offsets.wall_dist = s->offsets.kappa + nmodes; 271175f00a6SJames Wright s->offsets.ubar = s->offsets.wall_dist + nprofs; 272ba6664aeSJames Wright s->offsets.cij = s->offsets.ubar + nprofs*3; 273ba6664aeSJames Wright s->offsets.eps = s->offsets.cij + nprofs*6; 274ba6664aeSJames Wright s->offsets.lt = s->offsets.eps + nprofs; 2754e139266SJames Wright s->offsets.ynodes = s->offsets.lt + nprofs; 2764e139266SJames Wright PetscInt total_num_scalars = s->offsets.ynodes + s->nynodes; 277ba6664aeSJames Wright s->total_bytes = sizeof(*stg_ctx) + total_num_scalars*sizeof(stg_ctx->data[0]); 278*24941a69SJames Wright PetscCall(PetscMalloc(s->total_bytes, &stg_ctx)); 279ba6664aeSJames Wright *stg_ctx = *s; 280*24941a69SJames Wright PetscCall(PetscFree(s)); 281ba6664aeSJames Wright } 282ba6664aeSJames Wright 283*24941a69SJames Wright PetscCall(ReadSTGInflow(comm, stg_inflow_path, stg_ctx)); 284*24941a69SJames Wright PetscCall(ReadSTGRand(comm, stg_rand_path, stg_ctx)); 285ba6664aeSJames Wright 2864e139266SJames Wright if (stg_ctx->nynodes > 0) { 2874e139266SJames Wright CeedScalar *ynodes_ctx = &stg_ctx->data[stg_ctx->offsets.ynodes]; 2884e139266SJames Wright for (PetscInt i=0; i<stg_ctx->nynodes; i++) ynodes_ctx[i] = ynodes[i]; 2894e139266SJames Wright } 2904e139266SJames Wright 291ba6664aeSJames Wright // -- Calculate kappa 292ba6664aeSJames Wright { 293ba6664aeSJames Wright CeedScalar *kappa = &stg_ctx->data[stg_ctx->offsets.kappa]; 294175f00a6SJames Wright CeedScalar *wall_dist = &stg_ctx->data[stg_ctx->offsets.wall_dist]; 295ba6664aeSJames Wright CeedScalar *lt = &stg_ctx->data[stg_ctx->offsets.lt]; 296ba6664aeSJames Wright CeedScalar le, le_max=0; 297ba6664aeSJames Wright 298ba6664aeSJames Wright CeedPragmaSIMD 299ba6664aeSJames Wright for (PetscInt i=0; i<stg_ctx->nprofs; i++) { 300175f00a6SJames Wright le = PetscMin(2*wall_dist[i], 3*lt[i]); 301ba6664aeSJames Wright if (le_max < le) le_max = le; 302ba6664aeSJames Wright } 303ba6664aeSJames Wright CeedScalar kmin = M_PI/le_max; 304ba6664aeSJames Wright 305ba6664aeSJames Wright CeedPragmaSIMD 306ba6664aeSJames Wright for (PetscInt i=0; i<stg_ctx->nmodes; i++) { 307ba6664aeSJames Wright kappa[i] = kmin*pow(stg_ctx->alpha, i); 308ba6664aeSJames Wright } 309ba6664aeSJames Wright } //end calculate kappa 310ba6664aeSJames Wright 311*24941a69SJames Wright PetscCall(PetscFree(*pstg_ctx)); 312ba6664aeSJames Wright *pstg_ctx = stg_ctx; 313ba6664aeSJames Wright PetscFunctionReturn(0); 314ba6664aeSJames Wright } 315ba6664aeSJames Wright 316ba6664aeSJames Wright PetscErrorCode SetupSTG(const MPI_Comm comm, const DM dm, ProblemData *problem, 317ba6664aeSJames Wright User user, const bool prescribe_T, 3184e139266SJames Wright const CeedScalar theta0, const CeedScalar P0, 3194e139266SJames Wright const CeedScalar ynodes[], const CeedInt nynodes) { 320ba6664aeSJames Wright char stg_inflow_path[PETSC_MAX_PATH_LEN] = "./STGInflow.dat"; 321ba6664aeSJames Wright char stg_rand_path[PETSC_MAX_PATH_LEN] = "./STGRand.dat"; 3224e139266SJames Wright PetscBool mean_only = PETSC_FALSE, 32389060322SJames Wright use_stgstrong = PETSC_FALSE, 32489060322SJames Wright use_fluctuating_IC = PETSC_FALSE; 3254e139266SJames Wright CeedScalar u0 = 0.0, 3264e139266SJames Wright alpha = 1.01; 327ba6664aeSJames Wright CeedQFunctionContext stg_context; 328ba6664aeSJames Wright NewtonianIdealGasContext newtonian_ig_ctx; 329ba6664aeSJames Wright PetscFunctionBeginUser; 330ba6664aeSJames Wright 331ba6664aeSJames Wright // Get options 332ba6664aeSJames Wright PetscOptionsBegin(comm, NULL, "STG Boundary Condition Options", NULL); 333*24941a69SJames Wright PetscCall(PetscOptionsString("-stg_inflow_path", "Path to STGInflow.dat", NULL, 334ba6664aeSJames Wright stg_inflow_path, stg_inflow_path, 335*24941a69SJames Wright sizeof(stg_inflow_path), NULL)); 336*24941a69SJames Wright PetscCall(PetscOptionsString("-stg_rand_path", "Path to STGInflow.dat", NULL, 337ba6664aeSJames Wright stg_rand_path,stg_rand_path, 338*24941a69SJames Wright sizeof(stg_rand_path), NULL)); 339*24941a69SJames Wright PetscCall(PetscOptionsReal("-stg_alpha", "Growth rate of the wavemodes", NULL, 340*24941a69SJames Wright alpha, &alpha, NULL)); 341*24941a69SJames Wright PetscCall(PetscOptionsReal("-stg_u0", "Advective velocity for the fluctuations", 342*24941a69SJames Wright NULL, u0, &u0, NULL)); 343*24941a69SJames Wright PetscCall(PetscOptionsBool("-stg_mean_only", "Only apply mean profile", 344*24941a69SJames Wright NULL, mean_only, &mean_only, NULL)); 345*24941a69SJames Wright PetscCall(PetscOptionsBool("-stg_strong", "Enforce STG inflow strongly", 346*24941a69SJames Wright NULL, use_stgstrong, &use_stgstrong, NULL)); 34789060322SJames Wright PetscCall(PetscOptionsBool("-stg_fluctuating_IC", 34889060322SJames Wright "\"Extrude\" the fluctuations through the domain as an initial condition", 34989060322SJames Wright NULL, use_fluctuating_IC, &use_fluctuating_IC, NULL)); 350ba6664aeSJames Wright PetscOptionsEnd(); 351ba6664aeSJames Wright 352*24941a69SJames Wright PetscCall(PetscCalloc1(1, &global_stg_ctx)); 35365dd5cafSJames Wright global_stg_ctx->alpha = alpha; 35465dd5cafSJames Wright global_stg_ctx->u0 = u0; 35565dd5cafSJames Wright global_stg_ctx->is_implicit = user->phys->implicit; 35665dd5cafSJames Wright global_stg_ctx->prescribe_T = prescribe_T; 35765dd5cafSJames Wright global_stg_ctx->mean_only = mean_only; 35889060322SJames Wright global_stg_ctx->use_fluctuating_IC = use_fluctuating_IC; 35965dd5cafSJames Wright global_stg_ctx->theta0 = theta0; 36065dd5cafSJames Wright global_stg_ctx->P0 = P0; 36165dd5cafSJames Wright global_stg_ctx->nynodes = nynodes; 362ba6664aeSJames Wright 363ba6664aeSJames Wright { 364ba6664aeSJames Wright // Calculate dx assuming constant spacing 365ba6664aeSJames Wright PetscReal domain_min[3], domain_max[3], domain_size[3]; 366*24941a69SJames Wright PetscCall(DMGetBoundingBox(dm, domain_min, domain_max)); 367ba6664aeSJames Wright for (PetscInt i=0; i<3; i++) domain_size[i] = domain_max[i] - domain_min[i]; 368ba6664aeSJames Wright 369ba6664aeSJames Wright PetscInt nmax = 3, faces[3]; 370*24941a69SJames Wright PetscCall(PetscOptionsGetIntArray(NULL, NULL, "-dm_plex_box_faces", faces, 371*24941a69SJames Wright &nmax, NULL)); 37265dd5cafSJames Wright global_stg_ctx->dx = domain_size[0]/faces[0]; 37365dd5cafSJames Wright global_stg_ctx->dz = domain_size[2]/faces[2]; 374ba6664aeSJames Wright } 375ba6664aeSJames Wright 376ba6664aeSJames Wright CeedQFunctionContextGetData(problem->apply_vol_rhs.qfunction_context, 377ba6664aeSJames Wright CEED_MEM_HOST, &newtonian_ig_ctx); 37865dd5cafSJames Wright global_stg_ctx->newtonian_ctx = *newtonian_ig_ctx; 379ba6664aeSJames Wright CeedQFunctionContextRestoreData(problem->apply_vol_rhs.qfunction_context, 380ba6664aeSJames Wright &newtonian_ig_ctx); 381ba6664aeSJames Wright 382*24941a69SJames Wright PetscCall(GetSTGContextData(comm, dm, stg_inflow_path, stg_rand_path, 383*24941a69SJames Wright &global_stg_ctx, ynodes)); 384ba6664aeSJames Wright 385ba6664aeSJames Wright CeedQFunctionContextCreate(user->ceed, &stg_context); 386ba6664aeSJames Wright CeedQFunctionContextSetData(stg_context, CEED_MEM_HOST, 38765dd5cafSJames Wright CEED_USE_POINTER, global_stg_ctx->total_bytes, global_stg_ctx); 388ba6664aeSJames Wright CeedQFunctionContextSetDataDestroy(stg_context, CEED_MEM_HOST, 389ba6664aeSJames Wright FreeContextPetsc); 390ba6664aeSJames Wright CeedQFunctionContextRegisterDouble(stg_context, "solution time", 391ba6664aeSJames Wright offsetof(struct STGShur14Context_, time), 1, 39286c7fc99SJed Brown "Physical time of the solution"); 393ba6664aeSJames Wright 394b77c53c9SJames Wright CeedQFunctionContextDestroy(&problem->ics.qfunction_context); 395b77c53c9SJames Wright problem->ics.qfunction = ICsSTG; 396b77c53c9SJames Wright problem->ics.qfunction_loc = ICsSTG_loc; 397b77c53c9SJames Wright problem->ics.qfunction_context = stg_context; 398b77c53c9SJames Wright 3994e139266SJames Wright if (use_stgstrong) { 40065dd5cafSJames Wright // Use default boundary integral QF (BoundaryIntegral) in newtonian.h 401dada6cc0SJames Wright problem->use_dirichlet_ceed = PETSC_TRUE; 40236b31e27SJames Wright problem->bc_from_ics = PETSC_FALSE; 4034e139266SJames Wright } else { 404ba6664aeSJames Wright problem->apply_inflow.qfunction = STGShur14_Inflow; 405ba6664aeSJames Wright problem->apply_inflow.qfunction_loc = STGShur14_Inflow_loc; 4064dbab5e5SJames Wright problem->apply_inflow_jacobian.qfunction = STGShur14_Inflow_Jacobian; 4074dbab5e5SJames Wright problem->apply_inflow_jacobian.qfunction_loc = STGShur14_Inflow_Jacobian_loc; 4084dbab5e5SJames Wright CeedQFunctionContextReferenceCopy(stg_context, 4094dbab5e5SJames Wright &problem->apply_inflow.qfunction_context); 4104dbab5e5SJames Wright CeedQFunctionContextReferenceCopy(stg_context, 4114dbab5e5SJames Wright &problem->apply_inflow_jacobian.qfunction_context); 41236b31e27SJames Wright problem->bc_from_ics = PETSC_TRUE; 4134e139266SJames Wright } 414ba6664aeSJames Wright 415ba6664aeSJames Wright PetscFunctionReturn(0); 416ba6664aeSJames Wright } 4174e139266SJames Wright 4184e139266SJames Wright static inline PetscScalar FindDy(const PetscScalar ynodes[], 4194e139266SJames Wright const PetscInt nynodes, const PetscScalar y) { 4204e139266SJames Wright const PetscScalar half_mindy = 0.5 * (ynodes[1] - ynodes[0]); 4214e139266SJames Wright // ^^assuming min(dy) is first element off the wall 4224e139266SJames Wright PetscInt idx = -1; // Index 4234e139266SJames Wright 4244e139266SJames Wright for (PetscInt i=0; i<nynodes; i++) { 4254e139266SJames Wright if (y < ynodes[i] + half_mindy) { 4264e139266SJames Wright idx = i; break; 4274e139266SJames Wright } 4284e139266SJames Wright } 4294e139266SJames Wright if (idx == 0) return ynodes[1] - ynodes[0]; 4304e139266SJames Wright else if (idx == nynodes-1) return ynodes[nynodes-2] - ynodes[nynodes-1]; 4314e139266SJames Wright else return 0.5 * (ynodes[idx+1] - ynodes[idx-1]); 4324e139266SJames Wright } 4334e139266SJames Wright 4344e139266SJames Wright // Function passed to DMAddBoundary 435dada6cc0SJames Wright // NOTE: Not used in favor of QFunction-based method 4364e139266SJames Wright PetscErrorCode StrongSTGbcFunc(PetscInt dim, PetscReal time, 4374e139266SJames Wright const PetscReal x[], PetscInt Nc, PetscScalar bcval[], void *ctx) { 4384e139266SJames Wright PetscFunctionBeginUser; 4394e139266SJames Wright const STGShur14Context stg_ctx = (STGShur14Context) ctx; 4404e139266SJames Wright PetscScalar qn[stg_ctx->nmodes], u[3], ubar[3], cij[6], eps, lt; 4414e139266SJames Wright const bool mean_only = stg_ctx->mean_only; 4424e139266SJames Wright const PetscScalar dx = stg_ctx->dx; 4434e139266SJames Wright const PetscScalar dz = stg_ctx->dz; 4444e139266SJames Wright const PetscScalar mu = stg_ctx->newtonian_ctx.mu; 4454e139266SJames Wright const PetscScalar theta0 = stg_ctx->theta0; 4464e139266SJames Wright const PetscScalar P0 = stg_ctx->P0; 4474e139266SJames Wright const PetscScalar cv = stg_ctx->newtonian_ctx.cv; 4484e139266SJames Wright const PetscScalar cp = stg_ctx->newtonian_ctx.cp; 4494e139266SJames Wright const PetscScalar Rd = cp - cv; 4504e139266SJames Wright 4514e139266SJames Wright const CeedScalar rho = P0 / (Rd * theta0); 4524e139266SJames Wright InterpolateProfile(x[1], ubar, cij, &eps, <, stg_ctx); 4534e139266SJames Wright if (!mean_only) { 4544e139266SJames Wright const PetscInt nynodes = stg_ctx->nynodes; 4554e139266SJames Wright const PetscScalar *ynodes = &stg_ctx->data[stg_ctx->offsets.ynodes]; 4564e139266SJames Wright const PetscScalar h[3] = {dx, FindDy(ynodes, nynodes, x[1]), dz}; 4574e139266SJames Wright CalcSpectrum(x[1], eps, lt, h, mu/rho, qn, stg_ctx); 4584e139266SJames Wright STGShur14_Calc(x, time, ubar, cij, qn, u, stg_ctx); 4594e139266SJames Wright } else { 4604e139266SJames Wright for (CeedInt j=0; j<3; j++) u[j] = ubar[j]; 4614e139266SJames Wright } 4624e139266SJames Wright 4634e139266SJames Wright bcval[0] = rho; 4644e139266SJames Wright bcval[1] = rho * u[0]; 4654e139266SJames Wright bcval[2] = rho * u[1]; 4664e139266SJames Wright bcval[3] = rho * u[2]; 4674e139266SJames Wright PetscFunctionReturn(0); 4684e139266SJames Wright } 4694e139266SJames Wright 470192a7459SJames Wright PetscErrorCode SetupStrongSTG(DM dm, SimpleBC bc, ProblemData *problem, 471192a7459SJames Wright Physics phys) { 4724e139266SJames Wright DMLabel label; 4734e139266SJames Wright PetscFunctionBeginUser; 4744e139266SJames Wright 475192a7459SJames Wright PetscInt comps[5], num_comps=4; 47697baf651SJames Wright switch (phys->state_var) { 47797baf651SJames Wright case STATEVAR_CONSERVATIVE: 478192a7459SJames Wright // {0,1,2,3} for rho, rho*u, rho*v, rho*w 479192a7459SJames Wright for(int i=0; i<4; i++) comps[i] = i; 48097baf651SJames Wright break; 48197baf651SJames Wright 48297baf651SJames Wright case STATEVAR_PRIMITIVE: 48397baf651SJames Wright // {1,2,3,4} for u, v, w, T 48497baf651SJames Wright for(int i=0; i<4; i++) comps[i] = i+1; 48597baf651SJames Wright break; 486192a7459SJames Wright } 487192a7459SJames Wright 488*24941a69SJames Wright PetscCall(DMGetLabel(dm, "Face Sets", &label)); 4894e139266SJames Wright // Set wall BCs 4904e139266SJames Wright if (bc->num_inflow > 0) { 491*24941a69SJames Wright PetscCall(DMAddBoundary(dm, DM_BC_ESSENTIAL, "STG", label, 4924e139266SJames Wright bc->num_inflow, bc->inflows, 0, num_comps, 4934e139266SJames Wright comps, (void(*)(void))StrongSTGbcFunc, 494*24941a69SJames Wright NULL, global_stg_ctx, NULL)); 4954e139266SJames Wright } 4964e139266SJames Wright 4974e139266SJames Wright PetscFunctionReturn(0); 4984e139266SJames Wright } 499dada6cc0SJames Wright 500dada6cc0SJames Wright PetscErrorCode SetupStrongSTG_QF(Ceed ceed, ProblemData *problem, 5015dc40723SJames Wright CeedInt num_comp_x, CeedInt num_comp_q, CeedInt stg_data_size, 5025dc40723SJames Wright CeedInt q_data_size_sur, CeedQFunction *pqf_strongbc) { 503dada6cc0SJames Wright 504dada6cc0SJames Wright CeedQFunction qf_strongbc; 505dada6cc0SJames Wright PetscFunctionBeginUser; 506dada6cc0SJames Wright CeedQFunctionCreateInterior(ceed, 1, STGShur14_Inflow_StrongQF, 507dada6cc0SJames Wright STGShur14_Inflow_StrongQF_loc, &qf_strongbc); 508dada6cc0SJames Wright CeedQFunctionAddInput(qf_strongbc, "surface qdata", q_data_size_sur, 509dada6cc0SJames Wright CEED_EVAL_NONE); 510dada6cc0SJames Wright CeedQFunctionAddInput(qf_strongbc, "x", num_comp_x, CEED_EVAL_NONE); 511dada6cc0SJames Wright CeedQFunctionAddInput(qf_strongbc, "scale", 1, CEED_EVAL_NONE); 5125dc40723SJames Wright CeedQFunctionAddInput(qf_strongbc, "stg data", stg_data_size, CEED_EVAL_NONE); 513dada6cc0SJames Wright CeedQFunctionAddOutput(qf_strongbc, "q", num_comp_q, CEED_EVAL_NONE); 514dada6cc0SJames Wright 515dada6cc0SJames Wright CeedQFunctionSetContext(qf_strongbc, problem->ics.qfunction_context); 516dada6cc0SJames Wright *pqf_strongbc = qf_strongbc; 517dada6cc0SJames Wright PetscFunctionReturn(0); 518dada6cc0SJames Wright } 5195dc40723SJames Wright 5205dc40723SJames Wright PetscErrorCode SetupStrongSTG_PreProcessing(Ceed ceed, ProblemData *problem, 5215dc40723SJames Wright CeedInt num_comp_x, CeedInt stg_data_size, CeedInt q_data_size_sur, 5225dc40723SJames Wright CeedQFunction *pqf_strongbc) { 5235dc40723SJames Wright 5245dc40723SJames Wright CeedQFunction qf_strongbc; 5255dc40723SJames Wright PetscFunctionBeginUser; 5265dc40723SJames Wright CeedQFunctionCreateInterior(ceed, 1, Preprocess_STGShur14, 5275dc40723SJames Wright Preprocess_STGShur14_loc, &qf_strongbc); 5285dc40723SJames Wright CeedQFunctionAddInput(qf_strongbc, "surface qdata", q_data_size_sur, 5295dc40723SJames Wright CEED_EVAL_NONE); 5305dc40723SJames Wright CeedQFunctionAddInput(qf_strongbc, "x", num_comp_x, CEED_EVAL_NONE); 5315dc40723SJames Wright CeedQFunctionAddOutput(qf_strongbc, "stg data", stg_data_size, CEED_EVAL_NONE); 5325dc40723SJames Wright 5335dc40723SJames Wright CeedQFunctionSetContext(qf_strongbc, problem->ics.qfunction_context); 5345dc40723SJames Wright *pqf_strongbc = qf_strongbc; 5355dc40723SJames Wright PetscFunctionReturn(0); 5365dc40723SJames Wright } 537