1ba6664aeSJames Wright // Copyright (c) 2017-2022, Lawrence Livermore National Security, LLC and other CEED contributors. 2ba6664aeSJames Wright // All Rights Reserved. See the top-level LICENSE and NOTICE files for details. 3ba6664aeSJames Wright // 4ba6664aeSJames Wright // SPDX-License-Identifier: BSD-2-Clause 5ba6664aeSJames Wright // 6ba6664aeSJames Wright // This file is part of CEED: http://github.com/ceed 7ba6664aeSJames Wright 8ba6664aeSJames Wright /// @file 9ba6664aeSJames Wright /// Implementation of the Synthetic Turbulence Generation (STG) algorithm 10ba6664aeSJames Wright /// presented in Shur et al. 2014 11ba6664aeSJames Wright 12*2b730f8bSJeremy L Thompson #include "stg_shur14.h" 13*2b730f8bSJeremy L Thompson 14ba6664aeSJames Wright #include <math.h> 15ba6664aeSJames Wright #include <petsc.h> 16*2b730f8bSJeremy L Thompson #include <stdlib.h> 17*2b730f8bSJeremy L Thompson 18ba6664aeSJames Wright #include "../navierstokes.h" 19ba6664aeSJames Wright #include "../qfunctions/stg_shur14.h" 20ba6664aeSJames Wright 2165dd5cafSJames Wright STGShur14Context global_stg_ctx; 2265dd5cafSJames Wright 23ba6664aeSJames Wright /* 24ba6664aeSJames Wright * @brief Perform Cholesky decomposition on array of symmetric 3x3 matrices 25ba6664aeSJames Wright * 26ba6664aeSJames Wright * This assumes the input matrices are in order [11,22,33,12,13,23]. This 27ba6664aeSJames Wright * format is also used for the output. 28ba6664aeSJames Wright * 29ba6664aeSJames Wright * @param[in] comm MPI_Comm 30ba6664aeSJames Wright * @param[in] nprofs Number of matrices in Rij 31ba6664aeSJames Wright * @param[in] Rij Array of the symmetric matrices [6,nprofs] 32ba6664aeSJames Wright * @param[out] Cij Array of the Cholesky Decomposition matrices, [6,nprofs] 33ba6664aeSJames Wright */ 34*2b730f8bSJeremy L Thompson PetscErrorCode CalcCholeskyDecomp(MPI_Comm comm, PetscInt nprofs, const CeedScalar Rij[6][nprofs], CeedScalar Cij[6][nprofs]) { 35ba6664aeSJames Wright PetscFunctionBeginUser; 36ba6664aeSJames Wright for (PetscInt i = 0; i < nprofs; i++) { 37ba6664aeSJames Wright Cij[0][i] = sqrt(Rij[0][i]); 38ba6664aeSJames Wright Cij[3][i] = Rij[3][i] / Cij[0][i]; 39ba6664aeSJames Wright Cij[1][i] = sqrt(Rij[1][i] - pow(Cij[3][i], 2)); 40ba6664aeSJames Wright Cij[4][i] = Rij[4][i] / Cij[0][i]; 41ba6664aeSJames Wright Cij[5][i] = (Rij[5][i] - Cij[3][i] * Cij[4][i]) / Cij[1][i]; 42ba6664aeSJames Wright Cij[2][i] = sqrt(Rij[2][i] - pow(Cij[4][i], 2) - pow(Cij[5][i], 2)); 43ba6664aeSJames Wright 44*2b730f8bSJeremy L Thompson if (isnan(Cij[0][i]) || isnan(Cij[1][i]) || isnan(Cij[2][i])) { 45*2b730f8bSJeremy L Thompson SETERRQ(comm, -1, "Cholesky decomposition failed at profile point %" PetscInt_FMT ". Either STGInflow has non-SPD matrix or contains nan.", 46*2b730f8bSJeremy L Thompson i + 1); 47*2b730f8bSJeremy L Thompson } 48ba6664aeSJames Wright } 49ba6664aeSJames Wright PetscFunctionReturn(0); 50ba6664aeSJames Wright } 51ba6664aeSJames Wright 52ba6664aeSJames Wright /* 53ba6664aeSJames Wright * @brief Open a PHASTA *.dat file, grabbing dimensions and file pointer 54ba6664aeSJames Wright * 55ba6664aeSJames Wright * This function opens the file specified by `path` using `PetscFOpen` and 56ba6664aeSJames Wright * passes the file pointer in `fp`. It is not closed in this function, thus 57ba6664aeSJames Wright * `fp` must be closed sometime after this function has been called (using 58ba6664aeSJames Wright * `PetscFClose` for example). 59ba6664aeSJames Wright * 60ba6664aeSJames Wright * Assumes that the first line of the file has the number of rows and columns 61ba6664aeSJames Wright * as the only two entries, separated by a single space 62ba6664aeSJames Wright * 63ba6664aeSJames Wright * @param[in] comm MPI_Comm for the program 64ba6664aeSJames Wright * @param[in] path Path to the file 65ba6664aeSJames Wright * @param[in] char_array_len Length of the character array that should contain each line 66ba6664aeSJames Wright * @param[out] dims Dimensions of the file, taken from the first line of the file 67ba6664aeSJames Wright * @param[out] fp File pointer to the opened file 68ba6664aeSJames Wright */ 69*2b730f8bSJeremy L Thompson static PetscErrorCode OpenPHASTADatFile(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], const PetscInt char_array_len, PetscInt dims[2], 70*2b730f8bSJeremy L Thompson FILE **fp) { 71ba6664aeSJames Wright PetscInt ndims; 72ba6664aeSJames Wright char line[char_array_len]; 73ba6664aeSJames Wright char **array; 74ba6664aeSJames Wright 75ba6664aeSJames Wright PetscFunctionBeginUser; 7624941a69SJames Wright PetscCall(PetscFOpen(comm, path, "r", fp)); 7724941a69SJames Wright PetscCall(PetscSynchronizedFGets(comm, *fp, char_array_len, line)); 7824941a69SJames Wright PetscCall(PetscStrToArray(line, ' ', &ndims, &array)); 79*2b730f8bSJeremy L Thompson if (ndims != 2) { 80*2b730f8bSJeremy L Thompson SETERRQ(comm, -1, "Found %" PetscInt_FMT " dimensions instead of 2 on the first line of %s", ndims, path); 81*2b730f8bSJeremy L Thompson } 82ba6664aeSJames Wright 83ba6664aeSJames Wright for (PetscInt i = 0; i < ndims; i++) dims[i] = atoi(array[i]); 8424941a69SJames Wright PetscCall(PetscStrToArrayDestroy(ndims, array)); 85*2b730f8bSJeremy L Thompson 86ba6664aeSJames Wright PetscFunctionReturn(0); 87ba6664aeSJames Wright } 88ba6664aeSJames Wright 89ba6664aeSJames Wright /* 90ba6664aeSJames Wright * @brief Get the number of rows for the PHASTA file at path 91ba6664aeSJames Wright * 92ba6664aeSJames Wright * Assumes that the first line of the file has the number of rows and columns 93ba6664aeSJames Wright * as the only two entries, separated by a single space 94ba6664aeSJames Wright * 95ba6664aeSJames Wright * @param[in] comm MPI_Comm for the program 96ba6664aeSJames Wright * @param[in] path Path to the file 97ba6664aeSJames Wright * @param[out] nrows Number of rows 98ba6664aeSJames Wright */ 99*2b730f8bSJeremy L Thompson static PetscErrorCode GetNRows(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], PetscInt *nrows) { 100ba6664aeSJames Wright const PetscInt char_array_len = 512; 101ba6664aeSJames Wright PetscInt dims[2]; 102ba6664aeSJames Wright FILE *fp; 103ba6664aeSJames Wright 104ba6664aeSJames Wright PetscFunctionBeginUser; 10524941a69SJames Wright PetscCall(OpenPHASTADatFile(comm, path, char_array_len, dims, &fp)); 106ba6664aeSJames Wright *nrows = dims[0]; 10724941a69SJames Wright PetscCall(PetscFClose(comm, fp)); 108*2b730f8bSJeremy L Thompson 109ba6664aeSJames Wright PetscFunctionReturn(0); 110ba6664aeSJames Wright } 111ba6664aeSJames Wright 112ba6664aeSJames Wright /* 113ba6664aeSJames Wright * @brief Read the STGInflow file and load the contents into stg_ctx 114ba6664aeSJames Wright * 115ba6664aeSJames Wright * Assumes that the first line of the file has the number of rows and columns 116ba6664aeSJames Wright * as the only two entries, separated by a single space. 117ba6664aeSJames Wright * Assumes there are 14 columns in the file 118ba6664aeSJames Wright * 119ba6664aeSJames Wright * Function calculates the Cholesky decomposition from the Reynolds stress 120ba6664aeSJames Wright * profile found in the file 121ba6664aeSJames Wright * 122ba6664aeSJames Wright * @param[in] comm MPI_Comm for the program 123ba6664aeSJames Wright * @param[in] path Path to the STGInflow.dat file 124ba6664aeSJames Wright * @param[inout] stg_ctx STGShur14Context where the data will be loaded into 125ba6664aeSJames Wright */ 126*2b730f8bSJeremy L Thompson static PetscErrorCode ReadSTGInflow(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], STGShur14Context stg_ctx) { 127ba6664aeSJames Wright PetscInt ndims, dims[2]; 128ba6664aeSJames Wright FILE *fp; 129ba6664aeSJames Wright const PetscInt char_array_len = 512; 130ba6664aeSJames Wright char line[char_array_len]; 131ba6664aeSJames Wright char **array; 132ba6664aeSJames Wright 133ba6664aeSJames Wright PetscFunctionBeginUser; 134ba6664aeSJames Wright 13524941a69SJames Wright PetscCall(OpenPHASTADatFile(comm, path, char_array_len, dims, &fp)); 136ba6664aeSJames Wright 137ba6664aeSJames Wright CeedScalar rij[6][stg_ctx->nprofs]; 138175f00a6SJames Wright CeedScalar *wall_dist = &stg_ctx->data[stg_ctx->offsets.wall_dist]; 139ba6664aeSJames Wright CeedScalar *eps = &stg_ctx->data[stg_ctx->offsets.eps]; 140ba6664aeSJames Wright CeedScalar *lt = &stg_ctx->data[stg_ctx->offsets.lt]; 141*2b730f8bSJeremy L Thompson CeedScalar(*ubar)[stg_ctx->nprofs] = (CeedScalar(*)[stg_ctx->nprofs]) & stg_ctx->data[stg_ctx->offsets.ubar]; 142ba6664aeSJames Wright 143ba6664aeSJames Wright for (PetscInt i = 0; i < stg_ctx->nprofs; i++) { 14424941a69SJames Wright PetscCall(PetscSynchronizedFGets(comm, fp, char_array_len, line)); 14524941a69SJames Wright PetscCall(PetscStrToArray(line, ' ', &ndims, &array)); 146*2b730f8bSJeremy L Thompson if (ndims < dims[1]) { 147*2b730f8bSJeremy L Thompson SETERRQ(comm, -1, "Line %" PetscInt_FMT " of %s does not contain enough columns (%" PetscInt_FMT " instead of %" PetscInt_FMT ")", i, path, 148*2b730f8bSJeremy L Thompson ndims, dims[1]); 149*2b730f8bSJeremy L Thompson } 150ba6664aeSJames Wright 151175f00a6SJames Wright wall_dist[i] = (CeedScalar)atof(array[0]); 152ba6664aeSJames Wright ubar[0][i] = (CeedScalar)atof(array[1]); 153ba6664aeSJames Wright ubar[1][i] = (CeedScalar)atof(array[2]); 154ba6664aeSJames Wright ubar[2][i] = (CeedScalar)atof(array[3]); 155ba6664aeSJames Wright rij[0][i] = (CeedScalar)atof(array[4]); 156ba6664aeSJames Wright rij[1][i] = (CeedScalar)atof(array[5]); 157ba6664aeSJames Wright rij[2][i] = (CeedScalar)atof(array[6]); 158ba6664aeSJames Wright rij[3][i] = (CeedScalar)atof(array[7]); 159ba6664aeSJames Wright rij[4][i] = (CeedScalar)atof(array[8]); 160ba6664aeSJames Wright rij[5][i] = (CeedScalar)atof(array[9]); 161ba6664aeSJames Wright lt[i] = (CeedScalar)atof(array[12]); 162ba6664aeSJames Wright eps[i] = (CeedScalar)atof(array[13]); 163ba6664aeSJames Wright 164*2b730f8bSJeremy L Thompson if (wall_dist[i] < 0) SETERRQ(comm, -1, "Distance to wall in %s cannot be negative", path); 165*2b730f8bSJeremy L Thompson if (lt[i] < 0) SETERRQ(comm, -1, "Turbulent length scale in %s cannot be negative", path); 166*2b730f8bSJeremy L Thompson if (eps[i] < 0) SETERRQ(comm, -1, "Turbulent dissipation in %s cannot be negative", path); 167ba6664aeSJames Wright } 168*2b730f8bSJeremy L Thompson CeedScalar(*cij)[stg_ctx->nprofs] = (CeedScalar(*)[stg_ctx->nprofs]) & stg_ctx->data[stg_ctx->offsets.cij]; 16924941a69SJames Wright PetscCall(CalcCholeskyDecomp(comm, stg_ctx->nprofs, rij, cij)); 17024941a69SJames Wright PetscCall(PetscFClose(comm, fp)); 171*2b730f8bSJeremy L Thompson 172ba6664aeSJames Wright PetscFunctionReturn(0); 173ba6664aeSJames Wright } 174ba6664aeSJames Wright 175ba6664aeSJames Wright /* 176ba6664aeSJames Wright * @brief Read the STGRand file and load the contents into stg_ctx 177ba6664aeSJames Wright * 178ba6664aeSJames Wright * Assumes that the first line of the file has the number of rows and columns 179ba6664aeSJames Wright * as the only two entries, separated by a single space. 180ba6664aeSJames Wright * Assumes there are 7 columns in the file 181ba6664aeSJames Wright * 182ba6664aeSJames Wright * @param[in] comm MPI_Comm for the program 183ba6664aeSJames Wright * @param[in] path Path to the STGRand.dat file 184ba6664aeSJames Wright * @param[inout] stg_ctx STGShur14Context where the data will be loaded into 185ba6664aeSJames Wright */ 186*2b730f8bSJeremy L Thompson static PetscErrorCode ReadSTGRand(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], STGShur14Context stg_ctx) { 187ba6664aeSJames Wright PetscInt ndims, dims[2]; 188ba6664aeSJames Wright FILE *fp; 189ba6664aeSJames Wright const PetscInt char_array_len = 512; 190ba6664aeSJames Wright char line[char_array_len]; 191ba6664aeSJames Wright char **array; 192ba6664aeSJames Wright 193ba6664aeSJames Wright PetscFunctionBeginUser; 19424941a69SJames Wright PetscCall(OpenPHASTADatFile(comm, path, char_array_len, dims, &fp)); 195ba6664aeSJames Wright 196ba6664aeSJames Wright CeedScalar *phi = &stg_ctx->data[stg_ctx->offsets.phi]; 197*2b730f8bSJeremy L Thompson CeedScalar(*d)[stg_ctx->nmodes] = (CeedScalar(*)[stg_ctx->nmodes]) & stg_ctx->data[stg_ctx->offsets.d]; 198*2b730f8bSJeremy L Thompson CeedScalar(*sigma)[stg_ctx->nmodes] = (CeedScalar(*)[stg_ctx->nmodes]) & stg_ctx->data[stg_ctx->offsets.sigma]; 199ba6664aeSJames Wright 200ba6664aeSJames Wright for (PetscInt i = 0; i < stg_ctx->nmodes; i++) { 20124941a69SJames Wright PetscCall(PetscSynchronizedFGets(comm, fp, char_array_len, line)); 20224941a69SJames Wright PetscCall(PetscStrToArray(line, ' ', &ndims, &array)); 203*2b730f8bSJeremy L Thompson if (ndims < dims[1]) { 204*2b730f8bSJeremy L Thompson SETERRQ(comm, -1, "Line %" PetscInt_FMT " of %s does not contain enough columns (%" PetscInt_FMT " instead of %" PetscInt_FMT ")", i, path, 205*2b730f8bSJeremy L Thompson ndims, dims[1]); 206*2b730f8bSJeremy L Thompson } 207ba6664aeSJames Wright 208ba6664aeSJames Wright d[0][i] = (CeedScalar)atof(array[0]); 209ba6664aeSJames Wright d[1][i] = (CeedScalar)atof(array[1]); 210ba6664aeSJames Wright d[2][i] = (CeedScalar)atof(array[2]); 211ba6664aeSJames Wright phi[i] = (CeedScalar)atof(array[3]); 212ba6664aeSJames Wright sigma[0][i] = (CeedScalar)atof(array[4]); 213ba6664aeSJames Wright sigma[1][i] = (CeedScalar)atof(array[5]); 214ba6664aeSJames Wright sigma[2][i] = (CeedScalar)atof(array[6]); 215ba6664aeSJames Wright } 21624941a69SJames Wright PetscCall(PetscFClose(comm, fp)); 217*2b730f8bSJeremy L Thompson 218ba6664aeSJames Wright PetscFunctionReturn(0); 219ba6664aeSJames Wright } 220ba6664aeSJames Wright 221ba6664aeSJames Wright /* 222ba6664aeSJames Wright * @brief Read STG data from input paths and put in STGShur14Context 223ba6664aeSJames Wright * 224ba6664aeSJames Wright * Reads data from input paths and puts them into a STGShur14Context object. 225ba6664aeSJames Wright * Data stored initially in `*pstg_ctx` will be copied over to the new 226ba6664aeSJames Wright * STGShur14Context instance. 227ba6664aeSJames Wright * 228ba6664aeSJames Wright * @param[in] comm MPI_Comm for the program 229ba6664aeSJames Wright * @param[in] dm DM for the program 230ba6664aeSJames Wright * @param[in] stg_inflow_path Path to STGInflow.dat file 231ba6664aeSJames Wright * @param[in] stg_rand_path Path to STGRand.dat file 232ba6664aeSJames Wright * @param[inout] pstg_ctx Pointer to STGShur14Context where the data will be loaded into 233ba6664aeSJames Wright */ 234*2b730f8bSJeremy L Thompson PetscErrorCode GetSTGContextData(const MPI_Comm comm, const DM dm, char stg_inflow_path[PETSC_MAX_PATH_LEN], char stg_rand_path[PETSC_MAX_PATH_LEN], 235*2b730f8bSJeremy L Thompson STGShur14Context *pstg_ctx, const CeedScalar ynodes[]) { 236ba6664aeSJames Wright PetscInt nmodes, nprofs; 237ba6664aeSJames Wright STGShur14Context stg_ctx; 238ba6664aeSJames Wright PetscFunctionBeginUser; 239ba6664aeSJames Wright 240ba6664aeSJames Wright // Get options 24124941a69SJames Wright PetscCall(GetNRows(comm, stg_rand_path, &nmodes)); 24224941a69SJames Wright PetscCall(GetNRows(comm, stg_inflow_path, &nprofs)); 243ba6664aeSJames Wright if (nmodes > STG_NMODES_MAX) 244*2b730f8bSJeremy L Thompson SETERRQ(comm, 1, 245*2b730f8bSJeremy L Thompson "Number of wavemodes in %s (%" PetscInt_FMT ") exceeds STG_NMODES_MAX (%" PetscInt_FMT 246*2b730f8bSJeremy L Thompson "). " 247*2b730f8bSJeremy L Thompson "Change size of STG_NMODES_MAX and recompile", 248*2b730f8bSJeremy L Thompson stg_rand_path, nmodes, STG_NMODES_MAX); 249ba6664aeSJames Wright 250ba6664aeSJames Wright { 251ba6664aeSJames Wright STGShur14Context s; 25224941a69SJames Wright PetscCall(PetscCalloc1(1, &s)); 253ba6664aeSJames Wright *s = **pstg_ctx; 254ba6664aeSJames Wright s->nmodes = nmodes; 255ba6664aeSJames Wright s->nprofs = nprofs; 256ba6664aeSJames Wright s->offsets.sigma = 0; 257ba6664aeSJames Wright s->offsets.d = nmodes * 3; 258ba6664aeSJames Wright s->offsets.phi = s->offsets.d + nmodes * 3; 259ba6664aeSJames Wright s->offsets.kappa = s->offsets.phi + nmodes; 260175f00a6SJames Wright s->offsets.wall_dist = s->offsets.kappa + nmodes; 261175f00a6SJames Wright s->offsets.ubar = s->offsets.wall_dist + nprofs; 262ba6664aeSJames Wright s->offsets.cij = s->offsets.ubar + nprofs * 3; 263ba6664aeSJames Wright s->offsets.eps = s->offsets.cij + nprofs * 6; 264ba6664aeSJames Wright s->offsets.lt = s->offsets.eps + nprofs; 2654e139266SJames Wright s->offsets.ynodes = s->offsets.lt + nprofs; 2664e139266SJames Wright PetscInt total_num_scalars = s->offsets.ynodes + s->nynodes; 267ba6664aeSJames Wright s->total_bytes = sizeof(*stg_ctx) + total_num_scalars * sizeof(stg_ctx->data[0]); 26824941a69SJames Wright PetscCall(PetscMalloc(s->total_bytes, &stg_ctx)); 269ba6664aeSJames Wright *stg_ctx = *s; 27024941a69SJames Wright PetscCall(PetscFree(s)); 271ba6664aeSJames Wright } 272ba6664aeSJames Wright 27324941a69SJames Wright PetscCall(ReadSTGInflow(comm, stg_inflow_path, stg_ctx)); 27424941a69SJames Wright PetscCall(ReadSTGRand(comm, stg_rand_path, stg_ctx)); 275ba6664aeSJames Wright 2764e139266SJames Wright if (stg_ctx->nynodes > 0) { 2774e139266SJames Wright CeedScalar *ynodes_ctx = &stg_ctx->data[stg_ctx->offsets.ynodes]; 2784e139266SJames Wright for (PetscInt i = 0; i < stg_ctx->nynodes; i++) ynodes_ctx[i] = ynodes[i]; 2794e139266SJames Wright } 2804e139266SJames Wright 281ba6664aeSJames Wright // -- Calculate kappa 282ba6664aeSJames Wright { 283ba6664aeSJames Wright CeedScalar *kappa = &stg_ctx->data[stg_ctx->offsets.kappa]; 284175f00a6SJames Wright CeedScalar *wall_dist = &stg_ctx->data[stg_ctx->offsets.wall_dist]; 285ba6664aeSJames Wright CeedScalar *lt = &stg_ctx->data[stg_ctx->offsets.lt]; 286ba6664aeSJames Wright CeedScalar le, le_max = 0; 287ba6664aeSJames Wright 288*2b730f8bSJeremy L Thompson CeedPragmaSIMD for (PetscInt i = 0; i < stg_ctx->nprofs; i++) { 289175f00a6SJames Wright le = PetscMin(2 * wall_dist[i], 3 * lt[i]); 290ba6664aeSJames Wright if (le_max < le) le_max = le; 291ba6664aeSJames Wright } 292ba6664aeSJames Wright CeedScalar kmin = M_PI / le_max; 293ba6664aeSJames Wright 294*2b730f8bSJeremy L Thompson CeedPragmaSIMD for (PetscInt i = 0; i < stg_ctx->nmodes; i++) { kappa[i] = kmin * pow(stg_ctx->alpha, i); } 295ba6664aeSJames Wright } // end calculate kappa 296ba6664aeSJames Wright 29724941a69SJames Wright PetscCall(PetscFree(*pstg_ctx)); 298ba6664aeSJames Wright *pstg_ctx = stg_ctx; 299ba6664aeSJames Wright PetscFunctionReturn(0); 300ba6664aeSJames Wright } 301ba6664aeSJames Wright 302*2b730f8bSJeremy L Thompson PetscErrorCode SetupSTG(const MPI_Comm comm, const DM dm, ProblemData *problem, User user, const bool prescribe_T, const CeedScalar theta0, 303*2b730f8bSJeremy L Thompson const CeedScalar P0, const CeedScalar ynodes[], const CeedInt nynodes) { 304ba6664aeSJames Wright char stg_inflow_path[PETSC_MAX_PATH_LEN] = "./STGInflow.dat"; 305ba6664aeSJames Wright char stg_rand_path[PETSC_MAX_PATH_LEN] = "./STGRand.dat"; 306*2b730f8bSJeremy L Thompson PetscBool mean_only = PETSC_FALSE, use_stgstrong = PETSC_FALSE, use_fluctuating_IC = PETSC_FALSE; 307*2b730f8bSJeremy L Thompson CeedScalar u0 = 0.0, alpha = 1.01; 308ba6664aeSJames Wright CeedQFunctionContext stg_context; 309ba6664aeSJames Wright NewtonianIdealGasContext newtonian_ig_ctx; 310ba6664aeSJames Wright PetscFunctionBeginUser; 311ba6664aeSJames Wright 312ba6664aeSJames Wright // Get options 313ba6664aeSJames Wright PetscOptionsBegin(comm, NULL, "STG Boundary Condition Options", NULL); 314*2b730f8bSJeremy L Thompson PetscCall(PetscOptionsString("-stg_inflow_path", "Path to STGInflow.dat", NULL, stg_inflow_path, stg_inflow_path, sizeof(stg_inflow_path), NULL)); 315*2b730f8bSJeremy L Thompson PetscCall(PetscOptionsString("-stg_rand_path", "Path to STGInflow.dat", NULL, stg_rand_path, stg_rand_path, sizeof(stg_rand_path), NULL)); 316*2b730f8bSJeremy L Thompson PetscCall(PetscOptionsReal("-stg_alpha", "Growth rate of the wavemodes", NULL, alpha, &alpha, NULL)); 317*2b730f8bSJeremy L Thompson PetscCall(PetscOptionsReal("-stg_u0", "Advective velocity for the fluctuations", NULL, u0, &u0, NULL)); 318*2b730f8bSJeremy L Thompson PetscCall(PetscOptionsBool("-stg_mean_only", "Only apply mean profile", NULL, mean_only, &mean_only, NULL)); 319*2b730f8bSJeremy L Thompson PetscCall(PetscOptionsBool("-stg_strong", "Enforce STG inflow strongly", NULL, use_stgstrong, &use_stgstrong, NULL)); 320*2b730f8bSJeremy L Thompson PetscCall(PetscOptionsBool("-stg_fluctuating_IC", "\"Extrude\" the fluctuations through the domain as an initial condition", NULL, 321*2b730f8bSJeremy L Thompson use_fluctuating_IC, &use_fluctuating_IC, NULL)); 322ba6664aeSJames Wright PetscOptionsEnd(); 323ba6664aeSJames Wright 32424941a69SJames Wright PetscCall(PetscCalloc1(1, &global_stg_ctx)); 32565dd5cafSJames Wright global_stg_ctx->alpha = alpha; 32665dd5cafSJames Wright global_stg_ctx->u0 = u0; 32765dd5cafSJames Wright global_stg_ctx->is_implicit = user->phys->implicit; 32865dd5cafSJames Wright global_stg_ctx->prescribe_T = prescribe_T; 32965dd5cafSJames Wright global_stg_ctx->mean_only = mean_only; 33089060322SJames Wright global_stg_ctx->use_fluctuating_IC = use_fluctuating_IC; 33165dd5cafSJames Wright global_stg_ctx->theta0 = theta0; 33265dd5cafSJames Wright global_stg_ctx->P0 = P0; 33365dd5cafSJames Wright global_stg_ctx->nynodes = nynodes; 334ba6664aeSJames Wright 335ba6664aeSJames Wright { 336ba6664aeSJames Wright // Calculate dx assuming constant spacing 337ba6664aeSJames Wright PetscReal domain_min[3], domain_max[3], domain_size[3]; 33824941a69SJames Wright PetscCall(DMGetBoundingBox(dm, domain_min, domain_max)); 339ba6664aeSJames Wright for (PetscInt i = 0; i < 3; i++) domain_size[i] = domain_max[i] - domain_min[i]; 340ba6664aeSJames Wright 341ba6664aeSJames Wright PetscInt nmax = 3, faces[3]; 342*2b730f8bSJeremy L Thompson PetscCall(PetscOptionsGetIntArray(NULL, NULL, "-dm_plex_box_faces", faces, &nmax, NULL)); 34365dd5cafSJames Wright global_stg_ctx->dx = domain_size[0] / faces[0]; 34465dd5cafSJames Wright global_stg_ctx->dz = domain_size[2] / faces[2]; 345ba6664aeSJames Wright } 346ba6664aeSJames Wright 347*2b730f8bSJeremy L Thompson CeedQFunctionContextGetData(problem->apply_vol_rhs.qfunction_context, CEED_MEM_HOST, &newtonian_ig_ctx); 34865dd5cafSJames Wright global_stg_ctx->newtonian_ctx = *newtonian_ig_ctx; 349*2b730f8bSJeremy L Thompson CeedQFunctionContextRestoreData(problem->apply_vol_rhs.qfunction_context, &newtonian_ig_ctx); 350ba6664aeSJames Wright 351*2b730f8bSJeremy L Thompson PetscCall(GetSTGContextData(comm, dm, stg_inflow_path, stg_rand_path, &global_stg_ctx, ynodes)); 352ba6664aeSJames Wright 353ba6664aeSJames Wright CeedQFunctionContextCreate(user->ceed, &stg_context); 354*2b730f8bSJeremy L Thompson CeedQFunctionContextSetData(stg_context, CEED_MEM_HOST, CEED_USE_POINTER, global_stg_ctx->total_bytes, global_stg_ctx); 355*2b730f8bSJeremy L Thompson CeedQFunctionContextSetDataDestroy(stg_context, CEED_MEM_HOST, FreeContextPetsc); 356*2b730f8bSJeremy L Thompson CeedQFunctionContextRegisterDouble(stg_context, "solution time", offsetof(struct STGShur14Context_, time), 1, "Physical time of the solution"); 357ba6664aeSJames Wright 358b77c53c9SJames Wright CeedQFunctionContextDestroy(&problem->ics.qfunction_context); 359b77c53c9SJames Wright problem->ics.qfunction = ICsSTG; 360b77c53c9SJames Wright problem->ics.qfunction_loc = ICsSTG_loc; 361b77c53c9SJames Wright problem->ics.qfunction_context = stg_context; 362b77c53c9SJames Wright 3634e139266SJames Wright if (use_stgstrong) { 36465dd5cafSJames Wright // Use default boundary integral QF (BoundaryIntegral) in newtonian.h 365dada6cc0SJames Wright problem->use_dirichlet_ceed = PETSC_TRUE; 36636b31e27SJames Wright problem->bc_from_ics = PETSC_FALSE; 3674e139266SJames Wright } else { 368ba6664aeSJames Wright problem->apply_inflow.qfunction = STGShur14_Inflow; 369ba6664aeSJames Wright problem->apply_inflow.qfunction_loc = STGShur14_Inflow_loc; 3704dbab5e5SJames Wright problem->apply_inflow_jacobian.qfunction = STGShur14_Inflow_Jacobian; 3714dbab5e5SJames Wright problem->apply_inflow_jacobian.qfunction_loc = STGShur14_Inflow_Jacobian_loc; 372*2b730f8bSJeremy L Thompson CeedQFunctionContextReferenceCopy(stg_context, &problem->apply_inflow.qfunction_context); 373*2b730f8bSJeremy L Thompson CeedQFunctionContextReferenceCopy(stg_context, &problem->apply_inflow_jacobian.qfunction_context); 37436b31e27SJames Wright problem->bc_from_ics = PETSC_TRUE; 3754e139266SJames Wright } 376ba6664aeSJames Wright 377ba6664aeSJames Wright PetscFunctionReturn(0); 378ba6664aeSJames Wright } 3794e139266SJames Wright 380*2b730f8bSJeremy L Thompson static inline PetscScalar FindDy(const PetscScalar ynodes[], const PetscInt nynodes, const PetscScalar y) { 3814e139266SJames Wright const PetscScalar half_mindy = 0.5 * (ynodes[1] - ynodes[0]); 3824e139266SJames Wright // ^^assuming min(dy) is first element off the wall 3834e139266SJames Wright PetscInt idx = -1; // Index 3844e139266SJames Wright 3854e139266SJames Wright for (PetscInt i = 0; i < nynodes; i++) { 3864e139266SJames Wright if (y < ynodes[i] + half_mindy) { 387*2b730f8bSJeremy L Thompson idx = i; 388*2b730f8bSJeremy L Thompson break; 3894e139266SJames Wright } 3904e139266SJames Wright } 3914e139266SJames Wright if (idx == 0) return ynodes[1] - ynodes[0]; 3924e139266SJames Wright else if (idx == nynodes - 1) return ynodes[nynodes - 2] - ynodes[nynodes - 1]; 3934e139266SJames Wright else return 0.5 * (ynodes[idx + 1] - ynodes[idx - 1]); 3944e139266SJames Wright } 3954e139266SJames Wright 3964e139266SJames Wright // Function passed to DMAddBoundary 397dada6cc0SJames Wright // NOTE: Not used in favor of QFunction-based method 398*2b730f8bSJeremy L Thompson PetscErrorCode StrongSTGbcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[], void *ctx) { 3994e139266SJames Wright PetscFunctionBeginUser; 400*2b730f8bSJeremy L Thompson 4014e139266SJames Wright const STGShur14Context stg_ctx = (STGShur14Context)ctx; 4024e139266SJames Wright PetscScalar qn[stg_ctx->nmodes], u[3], ubar[3], cij[6], eps, lt; 4034e139266SJames Wright const bool mean_only = stg_ctx->mean_only; 4044e139266SJames Wright const PetscScalar dx = stg_ctx->dx; 4054e139266SJames Wright const PetscScalar dz = stg_ctx->dz; 4064e139266SJames Wright const PetscScalar mu = stg_ctx->newtonian_ctx.mu; 4074e139266SJames Wright const PetscScalar theta0 = stg_ctx->theta0; 4084e139266SJames Wright const PetscScalar P0 = stg_ctx->P0; 4094e139266SJames Wright const PetscScalar cv = stg_ctx->newtonian_ctx.cv; 4104e139266SJames Wright const PetscScalar cp = stg_ctx->newtonian_ctx.cp; 4114e139266SJames Wright const PetscScalar Rd = cp - cv; 4124e139266SJames Wright 4134e139266SJames Wright const CeedScalar rho = P0 / (Rd * theta0); 4144e139266SJames Wright InterpolateProfile(x[1], ubar, cij, &eps, <, stg_ctx); 4154e139266SJames Wright if (!mean_only) { 4164e139266SJames Wright const PetscInt nynodes = stg_ctx->nynodes; 4174e139266SJames Wright const PetscScalar *ynodes = &stg_ctx->data[stg_ctx->offsets.ynodes]; 4184e139266SJames Wright const PetscScalar h[3] = {dx, FindDy(ynodes, nynodes, x[1]), dz}; 4194e139266SJames Wright CalcSpectrum(x[1], eps, lt, h, mu / rho, qn, stg_ctx); 4204e139266SJames Wright STGShur14_Calc(x, time, ubar, cij, qn, u, stg_ctx); 4214e139266SJames Wright } else { 4224e139266SJames Wright for (CeedInt j = 0; j < 3; j++) u[j] = ubar[j]; 4234e139266SJames Wright } 4244e139266SJames Wright 4254e139266SJames Wright bcval[0] = rho; 4264e139266SJames Wright bcval[1] = rho * u[0]; 4274e139266SJames Wright bcval[2] = rho * u[1]; 4284e139266SJames Wright bcval[3] = rho * u[2]; 4294e139266SJames Wright PetscFunctionReturn(0); 4304e139266SJames Wright } 4314e139266SJames Wright 432*2b730f8bSJeremy L Thompson PetscErrorCode SetupStrongSTG(DM dm, SimpleBC bc, ProblemData *problem, Physics phys) { 4334e139266SJames Wright DMLabel label; 4344e139266SJames Wright PetscFunctionBeginUser; 4354e139266SJames Wright 436192a7459SJames Wright PetscInt comps[5], num_comps = 4; 43797baf651SJames Wright switch (phys->state_var) { 43897baf651SJames Wright case STATEVAR_CONSERVATIVE: 439192a7459SJames Wright // {0,1,2,3} for rho, rho*u, rho*v, rho*w 440192a7459SJames Wright for (int i = 0; i < 4; i++) comps[i] = i; 44197baf651SJames Wright break; 44297baf651SJames Wright 44397baf651SJames Wright case STATEVAR_PRIMITIVE: 44497baf651SJames Wright // {1,2,3,4} for u, v, w, T 44597baf651SJames Wright for (int i = 0; i < 4; i++) comps[i] = i + 1; 44697baf651SJames Wright break; 447192a7459SJames Wright } 448192a7459SJames Wright 44924941a69SJames Wright PetscCall(DMGetLabel(dm, "Face Sets", &label)); 4504e139266SJames Wright // Set wall BCs 4514e139266SJames Wright if (bc->num_inflow > 0) { 452*2b730f8bSJeremy L Thompson PetscCall(DMAddBoundary(dm, DM_BC_ESSENTIAL, "STG", label, bc->num_inflow, bc->inflows, 0, num_comps, comps, (void (*)(void))StrongSTGbcFunc, 45324941a69SJames Wright NULL, global_stg_ctx, NULL)); 4544e139266SJames Wright } 4554e139266SJames Wright 4564e139266SJames Wright PetscFunctionReturn(0); 4574e139266SJames Wright } 458dada6cc0SJames Wright 459*2b730f8bSJeremy L Thompson PetscErrorCode SetupStrongSTG_QF(Ceed ceed, ProblemData *problem, CeedInt num_comp_x, CeedInt num_comp_q, CeedInt stg_data_size, 4605dc40723SJames Wright CeedInt q_data_size_sur, CeedQFunction *pqf_strongbc) { 461dada6cc0SJames Wright CeedQFunction qf_strongbc; 462dada6cc0SJames Wright PetscFunctionBeginUser; 463*2b730f8bSJeremy L Thompson CeedQFunctionCreateInterior(ceed, 1, STGShur14_Inflow_StrongQF, STGShur14_Inflow_StrongQF_loc, &qf_strongbc); 464*2b730f8bSJeremy L Thompson CeedQFunctionAddInput(qf_strongbc, "surface qdata", q_data_size_sur, CEED_EVAL_NONE); 465dada6cc0SJames Wright CeedQFunctionAddInput(qf_strongbc, "x", num_comp_x, CEED_EVAL_NONE); 466dada6cc0SJames Wright CeedQFunctionAddInput(qf_strongbc, "scale", 1, CEED_EVAL_NONE); 4675dc40723SJames Wright CeedQFunctionAddInput(qf_strongbc, "stg data", stg_data_size, CEED_EVAL_NONE); 468dada6cc0SJames Wright CeedQFunctionAddOutput(qf_strongbc, "q", num_comp_q, CEED_EVAL_NONE); 469dada6cc0SJames Wright 470dada6cc0SJames Wright CeedQFunctionSetContext(qf_strongbc, problem->ics.qfunction_context); 471dada6cc0SJames Wright *pqf_strongbc = qf_strongbc; 472dada6cc0SJames Wright PetscFunctionReturn(0); 473dada6cc0SJames Wright } 4745dc40723SJames Wright 475*2b730f8bSJeremy L Thompson PetscErrorCode SetupStrongSTG_PreProcessing(Ceed ceed, ProblemData *problem, CeedInt num_comp_x, CeedInt stg_data_size, CeedInt q_data_size_sur, 4765dc40723SJames Wright CeedQFunction *pqf_strongbc) { 4775dc40723SJames Wright CeedQFunction qf_strongbc; 4785dc40723SJames Wright PetscFunctionBeginUser; 479*2b730f8bSJeremy L Thompson CeedQFunctionCreateInterior(ceed, 1, Preprocess_STGShur14, Preprocess_STGShur14_loc, &qf_strongbc); 480*2b730f8bSJeremy L Thompson CeedQFunctionAddInput(qf_strongbc, "surface qdata", q_data_size_sur, CEED_EVAL_NONE); 4815dc40723SJames Wright CeedQFunctionAddInput(qf_strongbc, "x", num_comp_x, CEED_EVAL_NONE); 4825dc40723SJames Wright CeedQFunctionAddOutput(qf_strongbc, "stg data", stg_data_size, CEED_EVAL_NONE); 4835dc40723SJames Wright 4845dc40723SJames Wright CeedQFunctionSetContext(qf_strongbc, problem->ics.qfunction_context); 4855dc40723SJames Wright *pqf_strongbc = qf_strongbc; 4865dc40723SJames Wright PetscFunctionReturn(0); 4875dc40723SJames Wright } 488