xref: /libCEED/examples/fluids/qfunctions/newtonian.h (revision 7a57a7a00fd3cde6c897304c5734b40885fd49f4)
15aed82e4SJeremy L Thompson // Copyright (c) 2017-2024, Lawrence Livermore National Security, LLC and other CEED contributors.
23d8e8822SJeremy L Thompson // All Rights Reserved. See the top-level LICENSE and NOTICE files for details.
388b783a1SJames Wright //
43d8e8822SJeremy L Thompson // SPDX-License-Identifier: BSD-2-Clause
588b783a1SJames Wright //
63d8e8822SJeremy L Thompson // This file is part of CEED:  http://github.com/ceed
788b783a1SJames Wright 
888b783a1SJames Wright /// @file
988b783a1SJames Wright /// Operator for Navier-Stokes example using PETSc
1088b783a1SJames Wright #include <ceed.h>
11c9c2c079SJeremy L Thompson #include <math.h>
12738af36cSAdelekeBankole #include <stdlib.h>
132b730f8bSJeremy L Thompson 
14c6e8c570SJames Wright #include "newtonian_state.h"
15c9c2c079SJeremy L Thompson #include "newtonian_types.h"
162b89d87eSLeila Ghaffari #include "stabilization.h"
17c9c2c079SJeremy L Thompson #include "utils.h"
1888626eedSJames Wright 
191d2a9659SKenneth E. Jansen CEED_QFUNCTION_HELPER void InternalDampingLayer(const NewtonianIdealGasContext context, const State s, const CeedScalar sigma, CeedScalar damp_Y[5],
20530ad8c4SKenneth E. Jansen                                                 CeedScalar damp_residual[5]) {
21530ad8c4SKenneth E. Jansen   ScaleN(damp_Y, sigma, 5);
223bd61617SKenneth E. Jansen   State damp_s = StateFromY_fwd(context, s, damp_Y);
23530ad8c4SKenneth E. Jansen 
24530ad8c4SKenneth E. Jansen   CeedScalar U[5];
25530ad8c4SKenneth E. Jansen   UnpackState_U(damp_s.U, U);
26530ad8c4SKenneth E. Jansen   for (int i = 0; i < 5; i++) damp_residual[i] += U[i];
27530ad8c4SKenneth E. Jansen }
28530ad8c4SKenneth E. Jansen 
2988626eedSJames Wright // *****************************************************************************
3088b783a1SJames Wright // This QFunction sets a "still" initial condition for generic Newtonian IG problems
3188b783a1SJames Wright // *****************************************************************************
32be91e165SJames Wright CEED_QFUNCTION_HELPER int ICsNewtonianIG(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out, StateVariable state_var) {
3388b783a1SJames Wright   CeedScalar(*q0)[CEED_Q_VLA] = (CeedScalar(*)[CEED_Q_VLA])out[0];
3488b783a1SJames Wright 
3588626eedSJames Wright   const SetupContext context = (SetupContext)ctx;
3688626eedSJames Wright 
372b730f8bSJeremy L Thompson   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
3888b783a1SJames Wright     CeedScalar q[5] = {0.};
393bd61617SKenneth E. Jansen     State      s    = StateFromPrimitive(&context->gas, context->reference);
40be91e165SJames Wright     StateToQ(&context->gas, s, q, state_var);
412b730f8bSJeremy L Thompson     for (CeedInt j = 0; j < 5; j++) q0[j][i] = q[j];
42f0b01153SJames Wright   }
4388b783a1SJames Wright   return 0;
4488b783a1SJames Wright }
4588b783a1SJames Wright 
462b730f8bSJeremy L Thompson CEED_QFUNCTION(ICsNewtonianIG_Prim)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
47be91e165SJames Wright   return ICsNewtonianIG(ctx, Q, in, out, STATEVAR_PRIMITIVE);
48d310b3d3SAdeleke O. Bankole }
49d310b3d3SAdeleke O. Bankole CEED_QFUNCTION(ICsNewtonianIG_Conserv)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
50be91e165SJames Wright   return ICsNewtonianIG(ctx, Q, in, out, STATEVAR_CONSERVATIVE);
51dc805cc4SLeila Ghaffari }
52dc805cc4SLeila Ghaffari 
530fcbc436SJames Wright CEED_QFUNCTION_HELPER void MassFunction_Newtonian(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out,
540fcbc436SJames Wright                                                   StateVariable state_var) {
550fcbc436SJames Wright   const CeedScalar(*q_dot)[CEED_Q_VLA] = (const CeedScalar(*)[CEED_Q_VLA])in[0];
560fcbc436SJames Wright   const CeedScalar(*q)[CEED_Q_VLA]     = (const CeedScalar(*)[CEED_Q_VLA])in[1];
570fcbc436SJames Wright   const CeedScalar(*q_data)            = in[2];
580fcbc436SJames Wright   CeedScalar(*v)[CEED_Q_VLA]           = (CeedScalar(*)[CEED_Q_VLA])out[0];
590fcbc436SJames Wright   CeedScalar(*Grad_v)[5][CEED_Q_VLA]   = (CeedScalar(*)[5][CEED_Q_VLA])out[1];
600fcbc436SJames Wright 
610fcbc436SJames Wright   NewtonianIdealGasContext context = (NewtonianIdealGasContext)ctx;
620fcbc436SJames Wright 
630fcbc436SJames Wright   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
640fcbc436SJames Wright     const CeedScalar qi[5]     = {q[0][i], q[1][i], q[2][i], q[3][i], q[4][i]};
650fcbc436SJames Wright     const CeedScalar qi_dot[5] = {q_dot[0][i], q_dot[1][i], q_dot[2][i], q_dot[3][i], q_dot[4][i]};
660fcbc436SJames Wright     const State      s         = StateFromQ(context, qi, state_var);
670fcbc436SJames Wright     const State      s_dot     = StateFromQ(context, qi_dot, state_var);
680fcbc436SJames Wright     CeedScalar       wdetJ, dXdx[3][3];
690fcbc436SJames Wright     QdataUnpack_3D(Q, i, q_data, &wdetJ, dXdx);
700fcbc436SJames Wright 
710fcbc436SJames Wright     // Standard mass matrix term
720fcbc436SJames Wright     for (CeedInt f = 0; f < 5; f++) {
730fcbc436SJames Wright       v[f][i] = wdetJ * qi_dot[f];
740fcbc436SJames Wright     }
750fcbc436SJames Wright 
760fcbc436SJames Wright     // Stabilization method: none (Galerkin), SU, or SUPG
770fcbc436SJames Wright     State      grad_s[3] = {{{0.}}};
780fcbc436SJames Wright     CeedScalar Tau_d[3], stab[5][3], body_force[5] = {0.}, U_dot[5];
790fcbc436SJames Wright     UnpackState_U(s_dot.U, U_dot);
800fcbc436SJames Wright     Tau_diagPrim(context, s, dXdx, context->dt, Tau_d);
810fcbc436SJames Wright     Stabilization(context, s, Tau_d, grad_s, U_dot, body_force, stab);
820fcbc436SJames Wright 
830fcbc436SJames Wright     // Stabilized mass term
840fcbc436SJames Wright     for (CeedInt j = 0; j < 5; j++) {
850fcbc436SJames Wright       for (CeedInt k = 0; k < 3; k++) {
860fcbc436SJames Wright         Grad_v[k][j][i] = wdetJ * (stab[j][0] * dXdx[k][0] + stab[j][1] * dXdx[k][1] + stab[j][2] * dXdx[k][2]);
870fcbc436SJames Wright       }
880fcbc436SJames Wright     }
890fcbc436SJames Wright   }
900fcbc436SJames Wright }
910fcbc436SJames Wright 
920fcbc436SJames Wright CEED_QFUNCTION(MassFunction_Newtonian_Conserv)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
930fcbc436SJames Wright   MassFunction_Newtonian(ctx, Q, in, out, STATEVAR_CONSERVATIVE);
940fcbc436SJames Wright   return 0;
950fcbc436SJames Wright }
960fcbc436SJames Wright 
97dc805cc4SLeila Ghaffari // *****************************************************************************
98ea61e9acSJeremy L Thompson // This QFunction implements the following formulation of Navier-Stokes with explicit time stepping method
9988b783a1SJames Wright //
100ea61e9acSJeremy L Thompson // This is 3D compressible Navier-Stokes in conservation form with state variables of density, momentum density, and total energy density.
10188b783a1SJames Wright //
10288b783a1SJames Wright // State Variables: q = ( rho, U1, U2, U3, E )
10388b783a1SJames Wright //   rho - Mass Density
10488b783a1SJames Wright //   Ui  - Momentum Density,      Ui = rho ui
10588b783a1SJames Wright //   E   - Total Energy Density,  E  = rho (cv T + (u u)/2 + g z)
10688b783a1SJames Wright //
10788b783a1SJames Wright // Navier-Stokes Equations:
10888b783a1SJames Wright //   drho/dt + div( U )                               = 0
10988b783a1SJames Wright //   dU/dt   + div( rho (u x u) + P I3 ) + rho g khat = div( Fu )
11088b783a1SJames Wright //   dE/dt   + div( (E + P) u )                       = div( Fe )
11188b783a1SJames Wright //
11288b783a1SJames Wright // Viscous Stress:
11388b783a1SJames Wright //   Fu = mu (grad( u ) + grad( u )^T + lambda div ( u ) I3)
11488b783a1SJames Wright //
11588b783a1SJames Wright // Thermal Stress:
11688b783a1SJames Wright //   Fe = u Fu + k grad( T )
11788626eedSJames Wright // Equation of State
11888b783a1SJames Wright //   P = (gamma - 1) (E - rho (u u) / 2 - rho g z)
11988b783a1SJames Wright //
12088b783a1SJames Wright // Stabilization:
12188b783a1SJames Wright //   Tau = diag(TauC, TauM, TauM, TauM, TauE)
12288b783a1SJames Wright //     f1 = rho  sqrt(ui uj gij)
12388b783a1SJames Wright //     gij = dXi/dX * dXi/dX
12488b783a1SJames Wright //     TauC = Cc f1 / (8 gii)
12588b783a1SJames Wright //     TauM = min( 1 , 1 / f1 )
12688b783a1SJames Wright //     TauE = TauM / (Ce cv)
12788b783a1SJames Wright //
12888b783a1SJames Wright //  SU   = Galerkin + grad(v) . ( Ai^T * Tau * (Aj q,j) )
12988b783a1SJames Wright //
13088b783a1SJames Wright // Constants:
13188b783a1SJames Wright //   lambda = - 2 / 3,  From Stokes hypothesis
13288b783a1SJames Wright //   mu              ,  Dynamic viscosity
13388b783a1SJames Wright //   k               ,  Thermal conductivity
13488b783a1SJames Wright //   cv              ,  Specific heat, constant volume
13588b783a1SJames Wright //   cp              ,  Specific heat, constant pressure
13688b783a1SJames Wright //   g               ,  Gravity
13788b783a1SJames Wright //   gamma  = cp / cv,  Specific heat ratio
13888b783a1SJames Wright //
139ea61e9acSJeremy L Thompson // We require the product of the inverse of the Jacobian (dXdx_j,k) and its transpose (dXdx_k,j) to properly compute integrals of the form: int( gradv
140ea61e9acSJeremy L Thompson // gradu )
14188b783a1SJames Wright // *****************************************************************************
1422b730f8bSJeremy L Thompson CEED_QFUNCTION(RHSFunction_Newtonian)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
14346603fc5SJames Wright   const CeedScalar(*q)[CEED_Q_VLA]   = (const CeedScalar(*)[CEED_Q_VLA])in[0];
1449b6a821dSJames Wright   const CeedScalar(*Grad_q)          = in[1];
145f3e15844SJames Wright   const CeedScalar(*q_data)          = in[2];
146*7a57a7a0SJames Wright   const CeedScalar(*x)[CEED_Q_VLA]   = (const CeedScalar(*)[CEED_Q_VLA])in[3];
14746603fc5SJames Wright   CeedScalar(*v)[CEED_Q_VLA]         = (CeedScalar(*)[CEED_Q_VLA])out[0];
14846603fc5SJames Wright   CeedScalar(*Grad_v)[5][CEED_Q_VLA] = (CeedScalar(*)[5][CEED_Q_VLA])out[1];
14988b783a1SJames Wright 
15088b783a1SJames Wright   NewtonianIdealGasContext context = (NewtonianIdealGasContext)ctx;
15188626eedSJames Wright   const CeedScalar        *g       = context->g;
15288626eedSJames Wright   const CeedScalar         dt      = context->dt;
153*7a57a7a0SJames Wright   const CeedScalar         P0      = context->idl_pressure;
15488b783a1SJames Wright 
15546603fc5SJames Wright   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
156f3e15844SJames Wright     CeedScalar       U[5], wdetJ, dXdx[3][3];
157*7a57a7a0SJames Wright     const CeedScalar x_i[3] = {x[0][i], x[1][i], x[2][i]};
1585c677226SJed Brown     for (int j = 0; j < 5; j++) U[j] = q[j][i];
15942c90babSJames Wright     QdataUnpack_3D(Q, i, q_data, &wdetJ, dXdx);
1603bd61617SKenneth E. Jansen     State s = StateFromU(context, U);
1615c677226SJed Brown 
1625c677226SJed Brown     State grad_s[3];
1633bd61617SKenneth E. Jansen     StatePhysicalGradientFromReference(Q, i, context, s, STATEVAR_CONSERVATIVE, Grad_q, dXdx, grad_s);
1645c677226SJed Brown 
1655c677226SJed Brown     CeedScalar strain_rate[6], kmstress[6], stress[3][3], Fe[3];
166d08fcc28SJames Wright     KMStrainRate_State(grad_s, strain_rate);
1675c677226SJed Brown     NewtonianStress(context, strain_rate, kmstress);
1685c677226SJed Brown     KMUnpack(kmstress, stress);
1695c677226SJed Brown     ViscousEnergyFlux(context, s.Y, grad_s, stress, Fe);
1705c677226SJed Brown 
1715c677226SJed Brown     StateConservative F_inviscid[3];
1725c677226SJed Brown     FluxInviscid(context, s, F_inviscid);
1735c677226SJed Brown 
1745c677226SJed Brown     // Total flux
1755c677226SJed Brown     CeedScalar Flux[5][3];
1762b89d87eSLeila Ghaffari     FluxTotal(F_inviscid, stress, Fe, Flux);
1775c677226SJed Brown 
1787b69c783SJames Wright     for (CeedInt j = 0; j < 5; j++) {
1797b69c783SJames Wright       for (CeedInt k = 0; k < 3; k++) Grad_v[k][j][i] = wdetJ * (dXdx[k][0] * Flux[j][0] + dXdx[k][1] * Flux[j][1] + dXdx[k][2] * Flux[j][2]);
1802b730f8bSJeremy L Thompson     }
1815c677226SJed Brown 
182858ec087SKenneth E. Jansen     const CeedScalar body_force[5] = {0, s.U.density * g[0], s.U.density * g[1], s.U.density * g[2], Dot3(s.U.momentum, g)};
1832b730f8bSJeremy L Thompson     for (int j = 0; j < 5; j++) v[j][i] = wdetJ * body_force[j];
18488b783a1SJames Wright 
185*7a57a7a0SJames Wright     if (context->idl_enable) {
186*7a57a7a0SJames Wright       const CeedScalar sigma         = LinearRampCoefficient(context->idl_amplitude, context->idl_length, context->idl_start, x_i[0]);
187*7a57a7a0SJames Wright       CeedScalar       damp_state[5] = {s.Y.pressure - P0, 0, 0, 0, 0}, idl_residual[5] = {0.};
188*7a57a7a0SJames Wright       InternalDampingLayer(context, s, sigma, damp_state, idl_residual);
189*7a57a7a0SJames Wright       for (int j = 0; j < 5; j++) v[j][i] -= wdetJ * idl_residual[j];
190*7a57a7a0SJames Wright     }
191*7a57a7a0SJames Wright 
1922b89d87eSLeila Ghaffari     // -- Stabilization method: none (Galerkin), SU, or SUPG
1932b89d87eSLeila Ghaffari     CeedScalar Tau_d[3], stab[5][3], U_dot[5] = {0};
1942b89d87eSLeila Ghaffari     Tau_diagPrim(context, s, dXdx, dt, Tau_d);
1953bd61617SKenneth E. Jansen     Stabilization(context, s, Tau_d, grad_s, U_dot, body_force, stab);
19688b783a1SJames Wright 
1972b730f8bSJeremy L Thompson     for (CeedInt j = 0; j < 5; j++) {
1982b730f8bSJeremy L Thompson       for (CeedInt k = 0; k < 3; k++) Grad_v[k][j][i] -= wdetJ * (stab[j][0] * dXdx[k][0] + stab[j][1] * dXdx[k][1] + stab[j][2] * dXdx[k][2]);
1992b730f8bSJeremy L Thompson     }
200f0b01153SJames Wright   }
20188b783a1SJames Wright   return 0;
20288b783a1SJames Wright }
20388b783a1SJames Wright 
20488b783a1SJames Wright // *****************************************************************************
205ea61e9acSJeremy L Thompson // This QFunction implements the Navier-Stokes equations (mentioned above) with implicit time stepping method
20688b783a1SJames Wright //
20788b783a1SJames Wright //  SU   = Galerkin + grad(v) . ( Ai^T * Tau * (Aj q,j) )
20888b783a1SJames Wright //  SUPG = Galerkin + grad(v) . ( Ai^T * Tau * (q_dot + Aj q,j - body force) )
209ea61e9acSJeremy L Thompson //                                       (diffusive terms will be added later)
21088b783a1SJames Wright // *****************************************************************************
211be91e165SJames Wright CEED_QFUNCTION_HELPER int IFunction_Newtonian(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out, StateVariable state_var) {
21246603fc5SJames Wright   const CeedScalar(*q)[CEED_Q_VLA]     = (const CeedScalar(*)[CEED_Q_VLA])in[0];
2139b6a821dSJames Wright   const CeedScalar(*Grad_q)            = in[1];
21446603fc5SJames Wright   const CeedScalar(*q_dot)[CEED_Q_VLA] = (const CeedScalar(*)[CEED_Q_VLA])in[2];
215f3e15844SJames Wright   const CeedScalar(*q_data)            = in[3];
21646603fc5SJames Wright   const CeedScalar(*x)[CEED_Q_VLA]     = (const CeedScalar(*)[CEED_Q_VLA])in[4];
21746603fc5SJames Wright   CeedScalar(*v)[CEED_Q_VLA]           = (CeedScalar(*)[CEED_Q_VLA])out[0];
21846603fc5SJames Wright   CeedScalar(*Grad_v)[5][CEED_Q_VLA]   = (CeedScalar(*)[5][CEED_Q_VLA])out[1];
219f3e15844SJames Wright   CeedScalar(*jac_data)                = out[2];
22046603fc5SJames Wright 
22188b783a1SJames Wright   NewtonianIdealGasContext context = (NewtonianIdealGasContext)ctx;
22288626eedSJames Wright   const CeedScalar        *g       = context->g;
22388626eedSJames Wright   const CeedScalar         dt      = context->dt;
224ff9b3c0eSJames Wright   const CeedScalar         P0      = context->idl_pressure;
22588b783a1SJames Wright 
22646603fc5SJames Wright   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
22746603fc5SJames Wright     const CeedScalar qi[5]  = {q[0][i], q[1][i], q[2][i], q[3][i], q[4][i]};
2285c677226SJed Brown     const CeedScalar x_i[3] = {x[0][i], x[1][i], x[2][i]};
2293bd61617SKenneth E. Jansen     const State      s      = StateFromQ(context, qi, state_var);
2305c677226SJed Brown 
231f3e15844SJames Wright     CeedScalar wdetJ, dXdx[3][3];
232f3e15844SJames Wright     QdataUnpack_3D(Q, i, q_data, &wdetJ, dXdx);
2335c677226SJed Brown     State grad_s[3];
2343bd61617SKenneth E. Jansen     StatePhysicalGradientFromReference(Q, i, context, s, state_var, Grad_q, dXdx, grad_s);
2355c677226SJed Brown 
2365c677226SJed Brown     CeedScalar strain_rate[6], kmstress[6], stress[3][3], Fe[3];
237d08fcc28SJames Wright     KMStrainRate_State(grad_s, strain_rate);
2385c677226SJed Brown     NewtonianStress(context, strain_rate, kmstress);
2395c677226SJed Brown     KMUnpack(kmstress, stress);
2405c677226SJed Brown     ViscousEnergyFlux(context, s.Y, grad_s, stress, Fe);
2415c677226SJed Brown 
2425c677226SJed Brown     StateConservative F_inviscid[3];
2435c677226SJed Brown     FluxInviscid(context, s, F_inviscid);
2445c677226SJed Brown 
2455c677226SJed Brown     // Total flux
2465c677226SJed Brown     CeedScalar Flux[5][3];
2472b89d87eSLeila Ghaffari     FluxTotal(F_inviscid, stress, Fe, Flux);
2485c677226SJed Brown 
2497b69c783SJames Wright     for (CeedInt j = 0; j < 5; j++) {
2507b69c783SJames Wright       for (CeedInt k = 0; k < 3; k++) {
2517b69c783SJames Wright         Grad_v[k][j][i] = -wdetJ * (dXdx[k][0] * Flux[j][0] + dXdx[k][1] * Flux[j][1] + dXdx[k][2] * Flux[j][2]);
25246603fc5SJames Wright       }
2532b730f8bSJeremy L Thompson     }
2545c677226SJed Brown 
255858ec087SKenneth E. Jansen     const CeedScalar body_force[5] = {0, s.U.density * g[0], s.U.density * g[1], s.U.density * g[2], Dot3(s.U.momentum, g)};
25688b783a1SJames Wright 
2572b89d87eSLeila Ghaffari     // -- Stabilization method: none (Galerkin), SU, or SUPG
2583bd61617SKenneth E. Jansen     CeedScalar Tau_d[3], stab[5][3], U_dot[5] = {0}, qi_dot[5];
2593d02368aSJames Wright     for (int j = 0; j < 5; j++) qi_dot[j] = q_dot[j][i];
2603bd61617SKenneth E. Jansen     State s_dot = StateFromQ_fwd(context, s, qi_dot, state_var);
2613d02368aSJames Wright     UnpackState_U(s_dot.U, U_dot);
2623d02368aSJames Wright 
2632b730f8bSJeremy L Thompson     for (CeedInt j = 0; j < 5; j++) v[j][i] = wdetJ * (U_dot[j] - body_force[j]);
264530ad8c4SKenneth E. Jansen     if (context->idl_enable) {
2651d2a9659SKenneth E. Jansen       const CeedScalar sigma = LinearRampCoefficient(context->idl_amplitude, context->idl_length, context->idl_start, x_i[0]);
2661d2a9659SKenneth E. Jansen       StoredValuesPack(Q, i, 14, 1, &sigma, jac_data);
267530ad8c4SKenneth E. Jansen       CeedScalar damp_state[5] = {s.Y.pressure - P0, 0, 0, 0, 0}, idl_residual[5] = {0.};
2681d2a9659SKenneth E. Jansen       InternalDampingLayer(context, s, sigma, damp_state, idl_residual);
269530ad8c4SKenneth E. Jansen       for (int j = 0; j < 5; j++) v[j][i] += wdetJ * idl_residual[j];
270530ad8c4SKenneth E. Jansen     }
271530ad8c4SKenneth E. Jansen 
2722b89d87eSLeila Ghaffari     Tau_diagPrim(context, s, dXdx, dt, Tau_d);
2733bd61617SKenneth E. Jansen     Stabilization(context, s, Tau_d, grad_s, U_dot, body_force, stab);
27488b783a1SJames Wright 
2752b730f8bSJeremy L Thompson     for (CeedInt j = 0; j < 5; j++) {
27646603fc5SJames Wright       for (CeedInt k = 0; k < 3; k++) {
27746603fc5SJames Wright         Grad_v[k][j][i] += wdetJ * (stab[j][0] * dXdx[k][0] + stab[j][1] * dXdx[k][1] + stab[j][2] * dXdx[k][2]);
27846603fc5SJames Wright       }
2792b730f8bSJeremy L Thompson     }
280f3e15844SJames Wright     StoredValuesPack(Q, i, 0, 5, qi, jac_data);
281f3e15844SJames Wright     StoredValuesPack(Q, i, 5, 6, kmstress, jac_data);
282f3e15844SJames Wright     StoredValuesPack(Q, i, 11, 3, Tau_d, jac_data);
283f0b01153SJames Wright   }
28488b783a1SJames Wright   return 0;
28588b783a1SJames Wright }
286e334ad8fSJed Brown 
2872b730f8bSJeremy L Thompson CEED_QFUNCTION(IFunction_Newtonian_Conserv)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
288be91e165SJames Wright   return IFunction_Newtonian(ctx, Q, in, out, STATEVAR_CONSERVATIVE);
2893d02368aSJames Wright }
2903d02368aSJames Wright 
2912b730f8bSJeremy L Thompson CEED_QFUNCTION(IFunction_Newtonian_Prim)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
292be91e165SJames Wright   return IFunction_Newtonian(ctx, Q, in, out, STATEVAR_PRIMITIVE);
2933d02368aSJames Wright }
2943d02368aSJames Wright 
295dc805cc4SLeila Ghaffari // *****************************************************************************
296ea61e9acSJeremy L Thompson // This QFunction implements the jacobian of the Navier-Stokes equations for implicit time stepping method.
297dc805cc4SLeila Ghaffari // *****************************************************************************
298be91e165SJames Wright CEED_QFUNCTION_HELPER int IJacobian_Newtonian(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out, StateVariable state_var) {
29946603fc5SJames Wright   const CeedScalar(*dq)[CEED_Q_VLA]  = (const CeedScalar(*)[CEED_Q_VLA])in[0];
3009b6a821dSJames Wright   const CeedScalar(*Grad_dq)         = in[1];
301f3e15844SJames Wright   const CeedScalar(*q_data)          = in[2];
3021d2a9659SKenneth E. Jansen   const CeedScalar(*jac_data)        = in[3];
30346603fc5SJames Wright   CeedScalar(*v)[CEED_Q_VLA]         = (CeedScalar(*)[CEED_Q_VLA])out[0];
30446603fc5SJames Wright   CeedScalar(*Grad_v)[5][CEED_Q_VLA] = (CeedScalar(*)[5][CEED_Q_VLA])out[1];
30546603fc5SJames Wright 
306e334ad8fSJed Brown   NewtonianIdealGasContext context = (NewtonianIdealGasContext)ctx;
307e334ad8fSJed Brown   const CeedScalar        *g       = context->g;
308e334ad8fSJed Brown 
30946603fc5SJames Wright   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
310f3e15844SJames Wright     CeedScalar wdetJ, dXdx[3][3];
311f3e15844SJames Wright     QdataUnpack_3D(Q, i, q_data, &wdetJ, dXdx);
312e334ad8fSJed Brown 
313c98a0616SJames Wright     CeedScalar qi[5], kmstress[6], Tau_d[3];
314f3e15844SJames Wright     StoredValuesUnpack(Q, i, 0, 5, jac_data, qi);
315f3e15844SJames Wright     StoredValuesUnpack(Q, i, 5, 6, jac_data, kmstress);
316f3e15844SJames Wright     StoredValuesUnpack(Q, i, 11, 3, jac_data, Tau_d);
3173bd61617SKenneth E. Jansen     State s = StateFromQ(context, qi, state_var);
318e334ad8fSJed Brown 
3193bd61617SKenneth E. Jansen     CeedScalar dqi[5];
3203d02368aSJames Wright     for (int j = 0; j < 5; j++) dqi[j] = dq[j][i];
3213bd61617SKenneth E. Jansen     State ds = StateFromQ_fwd(context, s, dqi, state_var);
322e334ad8fSJed Brown 
323e334ad8fSJed Brown     State grad_ds[3];
3243bd61617SKenneth E. Jansen     StatePhysicalGradientFromReference(Q, i, context, s, state_var, Grad_dq, dXdx, grad_ds);
325e334ad8fSJed Brown 
326e334ad8fSJed Brown     CeedScalar dstrain_rate[6], dkmstress[6], stress[3][3], dstress[3][3], dFe[3];
327d08fcc28SJames Wright     KMStrainRate_State(grad_ds, dstrain_rate);
328e334ad8fSJed Brown     NewtonianStress(context, dstrain_rate, dkmstress);
329e334ad8fSJed Brown     KMUnpack(dkmstress, dstress);
330e334ad8fSJed Brown     KMUnpack(kmstress, stress);
331e334ad8fSJed Brown     ViscousEnergyFlux_fwd(context, s.Y, ds.Y, grad_ds, stress, dstress, dFe);
332e334ad8fSJed Brown 
333e334ad8fSJed Brown     StateConservative dF_inviscid[3];
334e334ad8fSJed Brown     FluxInviscid_fwd(context, s, ds, dF_inviscid);
335e334ad8fSJed Brown 
336e334ad8fSJed Brown     // Total flux
337e334ad8fSJed Brown     CeedScalar dFlux[5][3];
3382b89d87eSLeila Ghaffari     FluxTotal(dF_inviscid, dstress, dFe, dFlux);
339e334ad8fSJed Brown 
34051b00d91SJames Wright     for (int j = 0; j < 5; j++) {
34151b00d91SJames Wright       for (int k = 0; k < 3; k++) Grad_v[k][j][i] = -wdetJ * (dXdx[k][0] * dFlux[j][0] + dXdx[k][1] * dFlux[j][1] + dXdx[k][2] * dFlux[j][2]);
3422b730f8bSJeremy L Thompson     }
343e334ad8fSJed Brown 
344858ec087SKenneth E. Jansen     const CeedScalar dbody_force[5] = {0, ds.U.density * g[0], ds.U.density * g[1], ds.U.density * g[2], Dot3(ds.U.momentum, g)};
3453d02368aSJames Wright     CeedScalar       dU[5]          = {0.};
3463d02368aSJames Wright     UnpackState_U(ds.U, dU);
3472b730f8bSJeremy L Thompson     for (int j = 0; j < 5; j++) v[j][i] = wdetJ * (context->ijacobian_time_shift * dU[j] - dbody_force[j]);
348e334ad8fSJed Brown 
349530ad8c4SKenneth E. Jansen     if (context->idl_enable) {
3501d2a9659SKenneth E. Jansen       const CeedScalar sigma         = jac_data[14 * Q + i];
351530ad8c4SKenneth E. Jansen       CeedScalar       damp_state[5] = {ds.Y.pressure, 0, 0, 0, 0}, idl_residual[5] = {0.};
352530ad8c4SKenneth E. Jansen       // This is a Picard-type linearization of the damping and could be replaced by an InternalDampingLayer_fwd that uses s and ds.
3531d2a9659SKenneth E. Jansen       InternalDampingLayer(context, s, sigma, damp_state, idl_residual);
354530ad8c4SKenneth E. Jansen       for (int j = 0; j < 5; j++) v[j][i] += wdetJ * idl_residual[j];
355530ad8c4SKenneth E. Jansen     }
356530ad8c4SKenneth E. Jansen 
3572b89d87eSLeila Ghaffari     // -- Stabilization method: none (Galerkin), SU, or SUPG
3582b89d87eSLeila Ghaffari     CeedScalar dstab[5][3], U_dot[5] = {0};
3592b89d87eSLeila Ghaffari     for (CeedInt j = 0; j < 5; j++) U_dot[j] = context->ijacobian_time_shift * dU[j];
3603bd61617SKenneth E. Jansen     Stabilization(context, s, Tau_d, grad_ds, U_dot, dbody_force, dstab);
3612b89d87eSLeila Ghaffari 
3622b730f8bSJeremy L Thompson     for (int j = 0; j < 5; j++) {
3632b730f8bSJeremy L Thompson       for (int k = 0; k < 3; k++) Grad_v[k][j][i] += wdetJ * (dstab[j][0] * dXdx[k][0] + dstab[j][1] * dXdx[k][1] + dstab[j][2] * dXdx[k][2]);
3642b730f8bSJeremy L Thompson     }
365f0b01153SJames Wright   }
366e334ad8fSJed Brown   return 0;
367e334ad8fSJed Brown }
36865dd5cafSJames Wright 
3692b730f8bSJeremy L Thompson CEED_QFUNCTION(IJacobian_Newtonian_Conserv)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
370be91e165SJames Wright   return IJacobian_Newtonian(ctx, Q, in, out, STATEVAR_CONSERVATIVE);
3713d02368aSJames Wright }
3723d02368aSJames Wright 
3732b730f8bSJeremy L Thompson CEED_QFUNCTION(IJacobian_Newtonian_Prim)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
374be91e165SJames Wright   return IJacobian_Newtonian(ctx, Q, in, out, STATEVAR_PRIMITIVE);
3753d02368aSJames Wright }
3763d02368aSJames Wright 
3772b89d87eSLeila Ghaffari // *****************************************************************************
37865dd5cafSJames Wright // Compute boundary integral (ie. for strongly set inflows)
3792b89d87eSLeila Ghaffari // *****************************************************************************
380be91e165SJames Wright CEED_QFUNCTION_HELPER int BoundaryIntegral(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out, StateVariable state_var) {
381f21e6b1cSJames Wright   const NewtonianIdealGasContext context = (NewtonianIdealGasContext)ctx;
38246603fc5SJames Wright   const CeedScalar(*q)[CEED_Q_VLA]       = (const CeedScalar(*)[CEED_Q_VLA])in[0];
3839b6a821dSJames Wright   const CeedScalar(*Grad_q)              = in[1];
384f3e15844SJames Wright   const CeedScalar(*q_data_sur)          = in[2];
38546603fc5SJames Wright   CeedScalar(*v)[CEED_Q_VLA]             = (CeedScalar(*)[CEED_Q_VLA])out[0];
386f21e6b1cSJames Wright   CeedScalar(*jac_data_sur)              = context->is_implicit ? out[1] : NULL;
38765dd5cafSJames Wright 
3882c4e60d7SJames Wright   const bool is_implicit = context->is_implicit;
38965dd5cafSJames Wright 
3902b730f8bSJeremy L Thompson   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
391efe9d856SJames Wright     const CeedScalar qi[5] = {q[0][i], q[1][i], q[2][i], q[3][i], q[4][i]};
3923bd61617SKenneth E. Jansen     State            s     = StateFromQ(context, qi, state_var);
39365dd5cafSJames Wright 
394f3e15844SJames Wright     CeedScalar wdetJb, dXdx[2][3], norm[3];
395f3e15844SJames Wright     QdataBoundaryUnpack_3D(Q, i, q_data_sur, &wdetJb, dXdx, norm);
396f3e15844SJames Wright     wdetJb *= is_implicit ? -1. : 1.;
39765dd5cafSJames Wright 
3982c4e60d7SJames Wright     State grad_s[3];
3993bd61617SKenneth E. Jansen     StatePhysicalGradientFromReference_Boundary(Q, i, context, s, state_var, Grad_q, dXdx, grad_s);
40065dd5cafSJames Wright 
4012c4e60d7SJames Wright     CeedScalar strain_rate[6], kmstress[6], stress[3][3], Fe[3];
402d08fcc28SJames Wright     KMStrainRate_State(grad_s, strain_rate);
4032c4e60d7SJames Wright     NewtonianStress(context, strain_rate, kmstress);
4042c4e60d7SJames Wright     KMUnpack(kmstress, stress);
4052c4e60d7SJames Wright     ViscousEnergyFlux(context, s.Y, grad_s, stress, Fe);
4062c4e60d7SJames Wright 
4072c4e60d7SJames Wright     StateConservative F_inviscid[3];
4082c4e60d7SJames Wright     FluxInviscid(context, s, F_inviscid);
4092c4e60d7SJames Wright 
4105bce47c7SJames Wright     CeedScalar Flux[5];
4115bce47c7SJames Wright     FluxTotal_Boundary(F_inviscid, stress, Fe, norm, Flux);
4122c4e60d7SJames Wright 
4135bce47c7SJames Wright     for (CeedInt j = 0; j < 5; j++) v[j][i] = -wdetJb * Flux[j];
41465dd5cafSJames Wright 
415f21e6b1cSJames Wright     if (is_implicit) {
416f3e15844SJames Wright       StoredValuesPack(Q, i, 0, 5, qi, jac_data_sur);
417f3e15844SJames Wright       StoredValuesPack(Q, i, 5, 6, kmstress, jac_data_sur);
41865dd5cafSJames Wright     }
419f21e6b1cSJames Wright   }
42065dd5cafSJames Wright   return 0;
42165dd5cafSJames Wright }
42265dd5cafSJames Wright 
4232b730f8bSJeremy L Thompson CEED_QFUNCTION(BoundaryIntegral_Conserv)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
424be91e165SJames Wright   return BoundaryIntegral(ctx, Q, in, out, STATEVAR_CONSERVATIVE);
42520840d50SJames Wright }
42620840d50SJames Wright 
4272b730f8bSJeremy L Thompson CEED_QFUNCTION(BoundaryIntegral_Prim)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
428be91e165SJames Wright   return BoundaryIntegral(ctx, Q, in, out, STATEVAR_PRIMITIVE);
42920840d50SJames Wright }
43020840d50SJames Wright 
4312b89d87eSLeila Ghaffari // *****************************************************************************
432b55ac660SJames Wright // Jacobian for "set nothing" boundary integral
4332b89d87eSLeila Ghaffari // *****************************************************************************
4342b730f8bSJeremy L Thompson CEED_QFUNCTION_HELPER int BoundaryIntegral_Jacobian(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out,
435be91e165SJames Wright                                                     StateVariable state_var) {
43646603fc5SJames Wright   const CeedScalar(*dq)[CEED_Q_VLA] = (const CeedScalar(*)[CEED_Q_VLA])in[0];
4379b6a821dSJames Wright   const CeedScalar(*Grad_dq)        = in[1];
438f3e15844SJames Wright   const CeedScalar(*q_data_sur)     = in[2];
439c1d93bc4SKenneth E. Jansen   const CeedScalar(*jac_data_sur)   = in[4];
440b55ac660SJames Wright   CeedScalar(*v)[CEED_Q_VLA]        = (CeedScalar(*)[CEED_Q_VLA])out[0];
441b55ac660SJames Wright 
442b55ac660SJames Wright   const NewtonianIdealGasContext context     = (NewtonianIdealGasContext)ctx;
443f3e15844SJames Wright   const bool                     is_implicit = context->is_implicit;
444b55ac660SJames Wright 
44546603fc5SJames Wright   CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) {
446f3e15844SJames Wright     CeedScalar wdetJb, dXdx[2][3], norm[3];
447f3e15844SJames Wright     QdataBoundaryUnpack_3D(Q, i, q_data_sur, &wdetJb, dXdx, norm);
448f3e15844SJames Wright     wdetJb *= is_implicit ? -1. : 1.;
449b55ac660SJames Wright 
4503bd61617SKenneth E. Jansen     CeedScalar qi[5], kmstress[6], dqi[5];
451f3e15844SJames Wright     StoredValuesUnpack(Q, i, 0, 5, jac_data_sur, qi);
452f3e15844SJames Wright     StoredValuesUnpack(Q, i, 5, 6, jac_data_sur, kmstress);
453efe9d856SJames Wright     for (int j = 0; j < 5; j++) dqi[j] = dq[j][i];
45457e55a1cSJames Wright 
4553bd61617SKenneth E. Jansen     State s  = StateFromQ(context, qi, state_var);
4563bd61617SKenneth E. Jansen     State ds = StateFromQ_fwd(context, s, dqi, state_var);
457b55ac660SJames Wright 
458b55ac660SJames Wright     State grad_ds[3];
4593bd61617SKenneth E. Jansen     StatePhysicalGradientFromReference_Boundary(Q, i, context, s, state_var, Grad_dq, dXdx, grad_ds);
460b55ac660SJames Wright 
461b55ac660SJames Wright     CeedScalar dstrain_rate[6], dkmstress[6], stress[3][3], dstress[3][3], dFe[3];
462d08fcc28SJames Wright     KMStrainRate_State(grad_ds, dstrain_rate);
463b55ac660SJames Wright     NewtonianStress(context, dstrain_rate, dkmstress);
464b55ac660SJames Wright     KMUnpack(dkmstress, dstress);
465b55ac660SJames Wright     KMUnpack(kmstress, stress);
466b55ac660SJames Wright     ViscousEnergyFlux_fwd(context, s.Y, ds.Y, grad_ds, stress, dstress, dFe);
467b55ac660SJames Wright 
468b55ac660SJames Wright     StateConservative dF_inviscid[3];
469b55ac660SJames Wright     FluxInviscid_fwd(context, s, ds, dF_inviscid);
470b55ac660SJames Wright 
4715bce47c7SJames Wright     CeedScalar dFlux[5];
4725bce47c7SJames Wright     FluxTotal_Boundary(dF_inviscid, dstress, dFe, norm, dFlux);
473b55ac660SJames Wright 
4745bce47c7SJames Wright     for (int j = 0; j < 5; j++) v[j][i] = -wdetJb * dFlux[j];
4754c0e8230SJames Wright   }
476b55ac660SJames Wright   return 0;
477b55ac660SJames Wright }
478b55ac660SJames Wright 
4792b730f8bSJeremy L Thompson CEED_QFUNCTION(BoundaryIntegral_Jacobian_Conserv)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
480be91e165SJames Wright   return BoundaryIntegral_Jacobian(ctx, Q, in, out, STATEVAR_CONSERVATIVE);
48120840d50SJames Wright }
48220840d50SJames Wright 
4832b730f8bSJeremy L Thompson CEED_QFUNCTION(BoundaryIntegral_Jacobian_Prim)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {
484be91e165SJames Wright   return BoundaryIntegral_Jacobian(ctx, Q, in, out, STATEVAR_PRIMITIVE);
48520840d50SJames Wright }
486