1 2 3scriptname=`basename $0` 4rundir=${scriptname%.sh} 5TIMEOUT=60 6 7if test "$PWD"!=`dirname $0`; then 8 cd `dirname $0` 9 abspath_scriptdir=$PWD 10fi 11if test -d "${rundir}" && test -n "${rundir}"; then 12 rm -f ${rundir}/*.tmp ${rundir}/*.err ${rundir}/*.out 13fi 14mkdir -p ${rundir} 15if test -n "${runfiles}"; then 16 for runfile in ${runfiles}; do 17 subdir=`dirname ${runfile}` 18 mkdir -p ${rundir}/${subdir} 19 cp -r ${runfile} ${rundir}/${subdir} 20 done 21fi 22cd ${rundir} 23 24# 25# Method to print out general and script specific options 26# 27print_usage() { 28 29cat >&2 <<EOF 30Usage: $0 [options] 31 32OPTIONS 33 -a <args> ......... Override default arguments 34 -c ................ Cleanup (remove generated files) 35 -C ................ Compile 36 -d ................ Launch in debugger 37 -e <args> ......... Add extra arguments to default 38 -E <args> ......... Add final arguments to default 39 -f ................ force attempt to run test that would otherwise be skipped 40 -h ................ help: print this message 41 -n <integer> ...... Override the number of processors to use 42 -j ................ Pass -j to petscdiff (just use diff) 43 -J <arg> .......... Pass -J to petscdiff (just use diff with arg) 44 -m ................ Update results using petscdiff 45 -M ................ Update alt files using petscdiff 46 -o <arg> .......... Output format: 'interactive', 'err_only' 47 -p ................ Print command: Print first command and exit 48 -t ................ Override the default timeout (default=$TIMEOUT sec) 49 -U ................ run cUda-memcheck 50 -V ................ run Valgrind 51 -v ................ Verbose: Print commands 52EOF 53 54 if declare -f extrausage > /dev/null; then extrausage; fi 55 exit $1 56} 57### 58## Arguments for overriding things 59# 60output_fmt="interactive" 61verbose=false 62cleanup=false 63compile=false 64debugger=false 65printcmd=false 66mpiexec_function=false 67force=false 68diff_flags="" 69while getopts "a:cCde:E:fhjJ:mMn:o:pt:UvV" arg 70do 71 case $arg in 72 a ) args="$OPTARG" ;; 73 c ) cleanup=true ;; 74 C ) compile=true ;; 75 d ) debugger=true ;; 76 e ) extra_args="$OPTARG" ;; 77 E ) final_args="$OPTARG" ;; 78 f ) force=true ;; 79 h ) print_usage; exit ;; 80 n ) nsize="$OPTARG" ;; 81 j ) diff_flags=$diff_flags" -j" ;; 82 J ) diff_flags=$diff_flags" -J $OPTARG" ;; 83 m ) diff_flags=$diff_flags" -m" ;; 84 M ) diff_flags=$diff_flags" -M" ;; 85 o ) output_fmt=$OPTARG ;; 86 p ) printcmd=true ;; 87 t ) TIMEOUT=$OPTARG ;; 88 U ) mpiexec="petsc_mpiexec_cudamemcheck $mpiexec" 89 mpiexec_function=true 90 ;; 91 V ) mpiexec="petsc_mpiexec_valgrind $mpiexec" 92 mpiexec_function=true 93 ;; 94 v ) verbose=true ;; 95 *) # To take care of any extra args 96 if test -n "$OPTARG"; then 97 eval $arg=\"$OPTARG\" 98 else 99 eval $arg=found 100 fi 101 ;; 102 esac 103done 104shift $(( $OPTIND - 1 )) 105 106# Individual tests can extend the default 107export MPIEXEC_TIMEOUT=$((TIMEOUT*timeoutfactor)) 108STARTTIME=`date +%s` 109 110if test -n "$extra_args"; then 111 args="$extra_args $args" 112fi 113if test -n "$final_args"; then 114 args="$args $final_args" 115fi 116if $debugger; then 117 args="-start_in_debugger $args" 118fi 119if test -n "$filter"; then 120 diff_flags=$diff_flags" -F \$'$filter'" 121fi 122if test -n "$filter_output"; then 123 diff_flags=$diff_flags" -f \$'$filter_output'" 124fi 125 126 127# Init 128success=0; failed=0; failures=""; rmfiles="" 129total=0 130todo=-1; skip=-1 131job_level=0 132 133if $compile; then 134 curexec=`basename ${exec}` 135 fullexec=${abspath_scriptdir}/${curexec} 136 maketarget=`echo ${fullexec} | sed "s#${petsc_dir}/*##"` 137 (cd $petsc_dir && make -f gmakefile.test ${maketarget}) 138fi 139 140### 141## Rest of code is functions 142# 143function petsc_report_tapoutput() { 144 notornot=$1 145 test_label=$2 146 comment=$3 147 if test -n "$comment"; then 148 comment=" # ${comment}" 149 fi 150 151 tap_message="${notornot} ok ${test_label}${comment}" 152 153 # Log messages 154 printf "${tap_message}\n" >> ${testlogtapfile} 155 156 if test ${output_fmt} == "err_only"; then 157 if test -n "${notornot}"; then 158 printf "${tap_message}\n" | tee -a ${testlogerrfile} 159 fi 160 else 161 printf "${tap_message}\n" 162 fi 163} 164 165function printcmd() { 166 # Print command that can be run from PETSC_DIR 167 cmd="$1" 168 basedir=`dirname ${PWD} | sed "s#${petsc_dir}/##"` 169 modcmd=`echo ${cmd} | sed -e "s#\.\.#${basedir}#" | sed s#\>.*## | sed s#\%#\%\%#` 170 if $mpiexec_function; then 171 # Have to expand valgrind/cudamemcheck 172 modcmd=`eval "$modcmd"` 173 fi 174 printf "${modcmd}\n" 175 exit 176} 177 178function petsc_testrun() { 179 # First arg = Basic command 180 # Second arg = stdout file 181 # Third arg = stderr file 182 # Fourth arg = label for reporting 183 rmfiles="${rmfiles} $2 $3" 184 tlabel=$4 185 error=$5 186 cmd="$1 > $2 2> $3" 187 if test -n "$error"; then 188 cmd="$1 1> $2 2>&1" 189 fi 190 echo "$cmd" > ${tlabel}.sh; chmod 755 ${tlabel}.sh 191 if $printcmd; then 192 printcmd "$cmd" 193 fi 194 195 eval "{ time -p $cmd ; } 2>> timing.out" 196 cmd_res=$? 197 # If testing the error output then we don't test the error code itself 198 if test -n "$error"; then 199 cmd_res=0 200 fi 201 # If it is a lack of GPU resources or MPI failure (Intel) then try once more 202 # See: src/sys/error/err.c 203 # Error #134 added to handle problems with the Radeon card for hip testing 204 if [ $cmd_res -eq 96 -o $cmd_res -eq 97 -o $cmd_res -eq 98 -o $cmd_res -eq 134 ]; then 205 printf "# retrying ${tlabel}\n" | tee -a ${testlogerrfile} 206 sleep 3 207 eval "{ time -p $cmd ; } 2>> timing.out" 208 cmd_res=$? 209 fi 210 touch "$2" "$3" 211 # It appears current MPICH and Open MPI just shut down the job execution and do not return an error code to the executable 212 # ETIMEDOUT=110 was used by Open MPI 3.0. MPICH used 255 213 # Earlier Open MPI versions returned 1 and the error string 214 # Here we only grep for error strings in output 215 #if [ $cmd_res -eq 110 -o $cmd_res -eq 255 ] || \ 216 if \ 217 grep -F -q -s 'I_MPI_JOB_TIMEOUT' "$2" "$3" || \ 218 grep -F -q -s 'APPLICATION TIMED OUT' "$2" "$3" || \ 219 grep -F -q -s MPIEXEC_TIMEOUT "$2" "$3" || \ 220 grep -F -q -s 'APPLICATION TERMINATED WITH THE EXIT STRING: job ending due to timeout' "$2" "$3" || \ 221 grep -q -s "Timeout after [0-9]* seconds. Terminating job" "$2" "$3"; then 222 timed_out=1 223 # If timed out, then ensure non-zero error code 224 if [ $cmd_res -eq 0 ]; then 225 cmd_res=1 226 fi 227 fi 228 229 # Report errors 230 comment="" 231 if test $cmd_res == 0; then 232 if "${verbose}"; then 233 comment="${cmd}" 234 fi 235 petsc_report_tapoutput "" "$tlabel" "$comment" 236 let success=$success+1 237 else 238 if [ -n "$timed_out" ]; then 239 comment="Exceeded timeout limit of $MPIEXEC_TIMEOUT s" 240 else 241 comment="Error code: ${cmd_res}" 242 fi 243 petsc_report_tapoutput "not" "$tlabel" "$comment" 244 245 # Report errors in detail 246 if [ -z "$timed_out" ]; then 247 # We've had tests fail but stderr->stdout, as well as having 248 # mpi_abort go to stderr which throws this test off. Show both 249 # with stdout first 250 awk '{print "#\t" $0}' < $2 | tee -a ${testlogerrfile} 251 # if statement is for diff tests 252 if test "$2" != "$3"; then 253 awk '{print "#\t" $0}' < $3 | tee -a ${testlogerrfile} 254 fi 255 fi 256 let failed=$failed+1 257 failures="$failures $tlabel" 258 fi 259 let total=$success+$failed 260 return $cmd_res 261} 262 263function petsc_testend() { 264 logfile=$1/counts/${label}.counts 265 logdir=`dirname $logfile` 266 if ! test -d "$logdir"; then 267 mkdir -p $logdir 268 fi 269 if ! test -e "$logfile"; then 270 touch $logfile 271 fi 272 printf "total $total\n" > $logfile 273 printf "success $success\n" >> $logfile 274 printf "failed $failed\n" >> $logfile 275 printf "failures $failures\n" >> $logfile 276 if test ${todo} -gt 0; then 277 printf "todo $todo\n" >> $logfile 278 fi 279 if test ${skip} -gt 0; then 280 printf "skip $skip\n" >> $logfile 281 fi 282 ENDTIME=`date +%s` 283 timing=`touch timing.out && grep -E '(user|sys)' timing.out | awk '{if( sum1 == "" || $2 > sum1 ) { sum1=sprintf("%.2f",$2) } ; sum2 += sprintf("%.2f",$2)} END {printf "%.2f %.2f\n",sum1,sum2}'` 284 printf "time $timing\n" >> $logfile 285 if $cleanup; then 286 echo "Cleaning up" 287 /bin/rm -f $rmfiles 288 fi 289} 290 291function petsc_mpiexec_cudamemcheck() { 292 # loops over the argument list to find the call to the test executable and insert the 293 # cuda memcheck command before it. 294 # first check if compute-sanitizer exists, since cuda-memcheck is deprecated from CUDA 295 # 11-ish onwards 296 if command -v compute-sanitizer &> /dev/null; then 297 memcheck_cmd="${PETSC_CUDAMEMCHECK_COMMAND:-compute-sanitizer}" 298 declare -a default_args_to_check=('--target-processes all' '--track-stream-ordered-races all') 299 else 300 memcheck_cmd="${PETSC_CUDAMEMCHECK_COMMAND:-cuda-memcheck}" 301 declare -a default_args_to_check=('--flush-to-disk yes') 302 fi 303 if [[ -z ${PETSC_CUDAMEMCHECK_ARGS} ]]; then 304 # if user has not set the memcheck args themselves loop over the predefined default 305 # arguments and check if they can be used 306 memcheck_args='--leak-check full --report-api-errors no ' 307 for option in "${default_args_to_check[@]}"; do 308 ${memcheck_cmd} ${memcheck_args} ${option} &> /dev/null 309 if [ $? -eq 0 ]; then 310 memcheck_args+="${option} " 311 fi 312 done 313 else 314 memcheck_args="${PETSC_CUDAMEMCHECK_ARGS}" 315 fi 316 pre_args=() 317 # regex to detect where the test lives in the command line. This 318 # marks the end of the options to mpiexec, and hence where we should insert the 319 # cuda-memcheck command 320 re="${executable}" 321 for i in "$@"; do 322 # first occurrence of the presence of petsc_arch is the executable, 323 # except when we install MPI ourselves 324 if [[ $i =~ ${re} ]]; then 325 # found it, put cuda memcheck command in 326 pre_args+=("${memcheck_cmd} ${memcheck_args}") 327 break 328 fi 329 pre_args+=("$i") 330 shift 331 done 332 # run command, but filter out 333 # ===== CUDA-MEMCHECK or ==== COMPUTE-SANITIZER 334 # and 335 # ===== ERROR SUMMARY: 0 errors 336 if ${printcmd}; then 337 echo ${pre_args[@]} "$@" 338 else 339 ${pre_args[@]} "$@" \ 340 | grep -v 'CUDA-MEMCHECK' \ 341 | grep -v 'COMPUTE-SANITIZER' \ 342 | grep -v 'LEAK SUMMARY: 0 bytes leaked in 0 allocations' \ 343 | grep -v 'ERROR SUMMARY: 0 errors' || [[ $? == 1 ]] 344 fi 345 # last or is needed to suppress grep exiting with error code 1 if it doesn't find a 346 # match 347} 348 349function petsc_mpiexec_valgrind() { 350 valgrind_cmd="valgrind -q --tool=memcheck --leak-check=yes --num-callers=20 --track-origins=yes --keep-debuginfo=yes --suppressions=${PETSC_DIR}/share/petsc/suppressions/valgrind --error-exitcode=10" 351 pre_args=() 352 re="${executable}" 353 for i in "$@"; do 354 if [[ $i =~ ${re} ]]; then 355 pre_args+=("${valgrind_cmd}") 356 break 357 fi 358 pre_args+=("$i") 359 shift 360 done 361 if ${printcmd}; then 362 echo ${pre_args[@]} "$@" 363 else 364 ${pre_args[@]} "$@" 365 fi 366} 367export LC_ALL=C 368