xref: /petsc/include/petscdmmoab.h (revision 9daf19fd0d22011a060902ed53673b48ac0c4e7d)

#if !defined(__PETSCMOAB_H)
#define __PETSCMOAB_H

#include <petscvec.h>    /*I      "petscvec.h"    I*/
#include <petscmat.h>    /*I      "petscmat.h"    I*/
#include <petscdm.h>     /*I      "petscdm.h"    I*/

#include <string>
#include <moab/Core.hpp> /*I      "moab/Core.hpp"    I*/
#ifdef MOAB_HAVE_MPI
#include <moab/ParallelComm.hpp> /*I      "moab/ParallelComm.hpp"    I*/
#endif

/* The MBERR macro is used to save typing. It checks a MOAB error code
 * (rval) and calls SETERRQ if not MB_SUCCESS. A message (msg) can
 * also be passed in. */
#define MBERR(msg,rval) do{if(rval != moab::MB_SUCCESS) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"MOAB ERROR (%i): %s",(PetscErrorCode)rval,msg);} while(0)
#define MBERRNM(rval) do{if(rval != moab::MB_SUCCESS) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"MOAB ERROR (%i)",rval);} while(0)
#define MBERRV(mbif,rval) do{if(rval != moab::MB_SUCCESS) { std::string emsg; mbif->get_last_error(emsg); SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"MOAB ERROR (%i): %s",(PetscErrorCode)rval,emsg.c_str());} } while(0)
#define MBERRVM(mbif,msg,rval) do{if(rval != moab::MB_SUCCESS) { std::string emsg; mbif->get_last_error(emsg); SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_LIB,"MOAB ERROR (%i): %s :: %s",(PetscErrorCode)rval,msg,emsg.c_str());} } while(0)


/* define enums for options to read and write MOAB files in parallel */
typedef enum {READ_PART,READ_DELETE,BCAST_DELETE} MoabReadMode;
static const char *const MoabReadModes[] = {"READ_PART","READ_DELETE","BCAST_DELETE","MoabReadMode","",0};
typedef enum {WRITE_PART,FORMAT} MoabWriteMode;
static const char *const MoabWriteModes[] = {"WRITE_PART","FORMAT","MoabWriteMode","",0};

PETSC_EXTERN PetscErrorCode DMMoabCreate(MPI_Comm comm, DM *moab);
PETSC_EXTERN PetscErrorCode DMMoabCreateMoab(MPI_Comm comm, moab::Interface *mbiface, moab::Tag *ltog_tag, moab::Range *range, DM *moab);
PETSC_EXTERN PetscErrorCode DMMoabOutput(DM,const char*,const char*);

PETSC_EXTERN PetscErrorCode DMMoabSetInterface(DM,moab::Interface *);
PETSC_EXTERN PetscErrorCode DMMoabGetInterface(DM,moab::Interface **);
#ifdef MOAB_HAVE_MPI
PETSC_EXTERN PetscErrorCode DMMoabGetParallelComm(DM,moab::ParallelComm**);
#endif

PETSC_EXTERN PetscErrorCode DMMoabSetLocalVertices(DM,moab::Range *);
PETSC_EXTERN PetscErrorCode DMMoabGetAllVertices(DM,moab::Range *local);
PETSC_EXTERN PetscErrorCode DMMoabGetLocalVertices(DM,const moab::Range**,const moab::Range**);
PETSC_EXTERN PetscErrorCode DMMoabSetLocalElements(DM,moab::Range*);
PETSC_EXTERN PetscErrorCode DMMoabGetLocalElements(DM,const moab::Range**);
PETSC_EXTERN PetscErrorCode DMMoabSetLocalToGlobalTag(DM,moab::Tag);
PETSC_EXTERN PetscErrorCode DMMoabGetLocalToGlobalTag(DM,moab::Tag*);
PETSC_EXTERN PetscErrorCode DMMoabSetBlockSize(DM,PetscInt bs);
PETSC_EXTERN PetscErrorCode DMMoabGetBlockSize(DM,PetscInt *bs);
PETSC_EXTERN PetscErrorCode DMMoabSetBlockFills(DM,const PetscInt*,const PetscInt*);
PETSC_EXTERN PetscErrorCode DMMoabGetHierarchyLevel(DM,PetscInt *);

PETSC_EXTERN PetscErrorCode DMMoabGetDimension(DM dm,PetscInt *dim);
PETSC_EXTERN PetscErrorCode DMMoabGetBoundaryEntities(DM dm,moab::Range*,moab::Range*,moab::Range*);
PETSC_EXTERN PetscErrorCode DMMoabGetMaterialBlock(DM dm,const moab::EntityHandle,PetscInt*);

PETSC_EXTERN PetscErrorCode DMMoabGetSize(DM dm,PetscInt*,PetscInt*);
PETSC_EXTERN PetscErrorCode DMMoabGetLocalSize(DM dm,PetscInt*,PetscInt*,PetscInt*,PetscInt*);
PETSC_EXTERN PetscErrorCode DMMoabGetOffset(DM dm,PetscInt*);

PETSC_EXTERN PetscErrorCode DMMoabVecGetArrayRead(DM,Vec,void*);
PETSC_EXTERN PetscErrorCode DMMoabVecRestoreArrayRead(DM,Vec,void*);
PETSC_EXTERN PetscErrorCode DMMoabVecGetArray(DM,Vec,void*);
PETSC_EXTERN PetscErrorCode DMMoabVecRestoreArray(DM,Vec,void*);

PETSC_EXTERN PetscErrorCode DMMoabCreateVector(DM dm, moab::Tag tag,const moab::Range *range,PetscBool serial, PetscBool destroy_tag,Vec *X);
PETSC_EXTERN PetscErrorCode DMMoabGetVecTag(Vec vec,moab::Tag *tag);
PETSC_EXTERN PetscErrorCode DMMoabGetVecRange(Vec vec,moab::Range *range);

PETSC_EXTERN PetscErrorCode DMMoabSetFieldVector(DM, PetscInt, Vec);
PETSC_EXTERN PetscErrorCode DMMoabSetGlobalFieldVector(DM, Vec);

PETSC_EXTERN PetscErrorCode DMMoabCreateVertices(DM, const PetscReal* coords, PetscInt nverts, moab::Range*);
PETSC_EXTERN PetscErrorCode DMMoabCreateElement(DM, const moab::EntityType type, const moab::EntityHandle* conn, PetscInt nverts, moab::EntityHandle* elem);
PETSC_EXTERN PetscErrorCode DMMoabCreateSubmesh(DM dm, DM *newdm);
PETSC_EXTERN PetscErrorCode DMMoabRenumberMeshEntities(DM dm);

PETSC_EXTERN PetscErrorCode DMMoabGetFieldName(DM dm, PetscInt field, const char **fieldName);
PETSC_EXTERN PetscErrorCode DMMoabSetFieldName(DM dm, PetscInt field, const char *fieldName);
PETSC_EXTERN PetscErrorCode DMMoabSetFieldNames(DM dm,PetscInt nfields,const char* fields[]);
PETSC_EXTERN PetscErrorCode DMMoabGetFieldDof(DM dm,moab::EntityHandle point, PetscInt field,PetscInt* dof);
PETSC_EXTERN PetscErrorCode DMMoabGetFieldDofs(DM dm,PetscInt npoints,const moab::EntityHandle* points, PetscInt field,PetscInt* dof);
PETSC_EXTERN PetscErrorCode DMMoabGetFieldDofsLocal(DM dm,PetscInt npoints,const moab::EntityHandle* points, PetscInt field,PetscInt* dof);
PETSC_EXTERN PetscErrorCode DMMoabGetDofs(DM dm,PetscInt npoints,const moab::EntityHandle* points,PetscInt* dof);
PETSC_EXTERN PetscErrorCode DMMoabGetDofsLocal(DM dm,PetscInt npoints,const moab::EntityHandle* points,PetscInt* dof);
PETSC_EXTERN PetscErrorCode DMMoabGetDofsBlocked(DM dm,PetscInt npoints,const moab::EntityHandle* points,PetscInt* dof);
PETSC_EXTERN PetscErrorCode DMMoabGetDofsBlockedLocal(DM dm,PetscInt npoints,const moab::EntityHandle* points,PetscInt* dof);

PETSC_EXTERN PetscErrorCode DMMoabGetVertexDofsBlocked(DM dm,PetscInt** dof);
PETSC_EXTERN PetscErrorCode DMMoabGetVertexDofsBlockedLocal(DM dm,PetscInt** dof);

/* discretization and assembly specific DMMoab interface functions */
PETSC_EXTERN PetscErrorCode DMMoabGetElementConnectivity(DM dm,moab::EntityHandle ehandle,PetscInt* nconn,const moab::EntityHandle **conn);
PETSC_EXTERN PetscErrorCode DMMoabGetVertexConnectivity(DM dm,moab::EntityHandle ehandle,PetscInt* nconn, moab::EntityHandle **conn);
PETSC_EXTERN PetscErrorCode DMMoabRestoreVertexConnectivity(DM dm,moab::EntityHandle ehandle,PetscInt* nconn, moab::EntityHandle **conn);
PETSC_EXTERN PetscErrorCode DMMoabGetVertexCoordinates(DM dm,PetscInt nconn,const moab::EntityHandle *conn,PetscReal *vpos);
PETSC_EXTERN PetscErrorCode DMMoabIsEntityOnBoundary(DM dm,const moab::EntityHandle ent,PetscBool* ent_on_boundary);
PETSC_EXTERN PetscErrorCode DMMoabCheckBoundaryVertices(DM dm,PetscInt nconn,const moab::EntityHandle *cnt,PetscBool* isbdvtx);
PETSC_EXTERN PetscErrorCode DMMoabGetBoundaryMarkers(DM dm,const moab::Range **bdvtx,const moab::Range** bdelems,const moab::Range** bdfaces);

/* DM utility creation interface */
PETSC_EXTERN PetscErrorCode DMMoabCreateBoxMesh(MPI_Comm,PetscInt,PetscBool,const PetscReal*,PetscInt,PetscInt,DM*);
PETSC_EXTERN PetscErrorCode DMMoabLoadFromFile(MPI_Comm,PetscInt,PetscInt,const char*,const char*,DM*);

/* Uniform refinement hierarchy interface */
PETSC_EXTERN PetscErrorCode DMMoabGenerateHierarchy(DM dm,PetscInt nlevels,PetscInt *ldegrees);
//PETSC_EXTERN PetscErrorCode DMMoabGenerateHierarchy(DM dm,PetscInt nlevels,PetscInt *ldegrees);
//PETSC_EXTERN PetscErrorCode DMMoabGenerateHierarchy(DM dm,PetscInt nlevels,PetscInt *ldegrees);

#endif