1552f7358SJed Brown /* 2552f7358SJed Brown DMPlex, for parallel unstructured distributed mesh problems. 3552f7358SJed Brown */ 426bd1501SBarry Smith #if !defined(PETSCDMPLEX_H) 526bd1501SBarry Smith #define PETSCDMPLEX_H 6552f7358SJed Brown 7224ef0b1SMatthew Knepley #include <petscsection.h> 8abe9303eSLisandro Dalcin #include <petscpartitioner.h> 9552f7358SJed Brown #include <petscdm.h> 1086fe8405SMatthew G. Knepley #include <petscdmplextypes.h> 11a0845e3aSMatthew G. Knepley #include <petscdt.h> 12a0845e3aSMatthew G. Knepley #include <petscfe.h> 130bacfa0aSMatthew G. Knepley #include <petscfv.h> 14799f573fSMatthew G. Knepley #include <petscsftypes.h> 15c330f8ffSToby Isaac #include <petscdmfield.h> 16ea8e1828Sksagiyam #include <petscviewer.h> 17552f7358SJed Brown 183c41b853SStefano Zampini PETSC_EXTERN PetscErrorCode PetscPartitionerDMPlexPartition(PetscPartitioner, DM, PetscSection, PetscSection, IS *); 1977623264SMatthew G. Knepley 205e488331SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexBuildFromCellList(DM, PetscInt, PetscInt, PetscInt, const PetscInt[]); 2125b6865aSVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexBuildFromCellListParallel(DM, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscSF *); 221edcf0b2SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexBuildCoordinatesFromCellList(DM, PetscInt, const PetscReal[]); 231edcf0b2SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexBuildCoordinatesFromCellListParallel(DM, PetscInt, PetscSF, const PetscReal[]); 24b09969d6SVaclav Hapla 25552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreate(MPI_Comm, DM*); 2627c04023SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateCohesiveSubmesh(DM, PetscBool, const char [], PetscInt, DM *); 27a4a685f2SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMPlexCreateFromCellListPetsc(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscBool, const PetscInt[], PetscInt, const PetscReal[], DM*); 28a4a685f2SJacob Faibussowitsch PETSC_EXTERN PETSC_DEPRECATED_FUNCTION("Use DMPlexCreateFromCellListPetsc() (since version 3.14)") PetscErrorCode DMPlexCreateFromCellList(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscBool, const int[], PetscInt, const double[], DM*); 2925b6865aSVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexCreateFromCellListParallelPetsc(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscBool, const PetscInt[], PetscInt, const PetscReal[], PetscSF *, DM *); 30a4a685f2SJacob Faibussowitsch PETSC_EXTERN PETSC_DEPRECATED_FUNCTION("Use DMPlexCreateFromCellListParallelPetsc() (since version 3.14)") PetscErrorCode DMPlexCreateFromCellListParallel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscBool, const int[], PetscInt, const PetscReal[], PetscSF *, DM *); 3106bbee04SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateFromDAG(DM, PetscInt, const PetscInt [], const PetscInt [], const PetscInt [], const PetscInt [], const PetscScalar []); 32*9318fe57SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateReferenceCell(MPI_Comm, DMPolytopeType, DM *); 33a9074c1eSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetOptionsPrefix(DM, const char []); 34552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetChart(DM, PetscInt *, PetscInt *); 35552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetChart(DM, PetscInt, PetscInt); 36552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetConeSize(DM, PetscInt, PetscInt *); 37552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetConeSize(DM, PetscInt, PetscInt); 38feb68dd6SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexAddConeSize(DM, PetscInt, PetscInt); 39552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetCone(DM, PetscInt, const PetscInt *[]); 400ce7577fSVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexGetConeTuple(DM, IS, PetscSection *, IS *); 41af9eab45SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexGetConeRecursive(DM, IS, PetscInt *, IS *[], PetscSection *[]); 42af9eab45SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexRestoreConeRecursive(DM, IS, PetscInt *, IS *[], PetscSection *[]); 43af9eab45SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexGetConeRecursiveVertices(DM, IS, IS *); 44552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetCone(DM, PetscInt, const PetscInt[]); 459f074e33SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexInsertCone(DM, PetscInt, PetscInt, PetscInt); 4677c88f5bSMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexInsertConeOrientation(DM, PetscInt, PetscInt, PetscInt); 47552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetConeOrientation(DM, PetscInt, const PetscInt *[]); 48552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetConeOrientation(DM, PetscInt, const PetscInt[]); 49552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetSupportSize(DM, PetscInt, PetscInt *); 50552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetSupportSize(DM, PetscInt, PetscInt); 51552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetSupport(DM, PetscInt, const PetscInt *[]); 52552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetSupport(DM, PetscInt, const PetscInt[]); 53552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexInsertSupport(DM, PetscInt, PetscInt, PetscInt); 54552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetConeSection(DM, PetscSection *); 558cb4d582SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetSupportSection(DM, PetscSection *); 56552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetCones(DM, PetscInt *[]); 57552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetConeOrientations(DM, PetscInt *[]); 58552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetMaxSizes(DM, PetscInt *, PetscInt *); 59552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSymmetrize(DM); 60552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexStratify(DM); 614e3744c5SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexEqual(DM,DM,PetscBool*); 62cb11e54dSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexReverseCell(DM, PetscInt); 63fa01033eSVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexOrientCell(DM,PetscInt,PetscInt,const PetscInt[]); 6427d0e99aSVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexCompareOrientations(DM, PetscInt, PetscInt, const PetscInt [], PetscInt *, PetscBool *); 65d27a0f52SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexOrient(DM); 66e101f074SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexPreallocateOperator(DM, PetscInt, PetscInt[], PetscInt[], PetscInt[], PetscInt[], Mat, PetscBool); 67552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetPointLocal(DM,PetscInt,PetscInt*,PetscInt*); 68081a2d76SSatish Balay PETSC_EXTERN PetscErrorCode DMPlexPointLocalRead(DM,PetscInt,const PetscScalar*,void*); 69a89cf0ddSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexPointLocalRef(DM,PetscInt,PetscScalar*,void*); 70a89cf0ddSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetPointLocalField(DM,PetscInt,PetscInt,PetscInt*,PetscInt*); 71a89cf0ddSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexPointLocalFieldRef(DM,PetscInt,PetscInt,PetscScalar*,void*); 72081a2d76SSatish Balay PETSC_EXTERN PetscErrorCode DMPlexPointLocalFieldRead(DM,PetscInt,PetscInt,const PetscScalar*,void*); 73552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetPointGlobal(DM,PetscInt,PetscInt*,PetscInt*); 74552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexPointGlobalRead(DM,PetscInt,const PetscScalar*,const void*); 75a89cf0ddSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexPointGlobalRef(DM,PetscInt,PetscScalar*,void*); 76a89cf0ddSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetPointGlobalField(DM,PetscInt,PetscInt,PetscInt*,PetscInt*); 77a89cf0ddSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexPointGlobalFieldRef(DM,PetscInt,PetscInt,PetscScalar*,void*); 78081a2d76SSatish Balay PETSC_EXTERN PetscErrorCode DMPlexPointGlobalFieldRead(DM,PetscInt,PetscInt,const PetscScalar*, void*); 79552f7358SJed Brown 80a7748839SVaclav Hapla /* Topological interpolation */ 81a7748839SVaclav Hapla PETSC_EXTERN const char * const DMPlexInterpolatedFlags[]; 829ade3219SVaclav Hapla /*E 839ade3219SVaclav Hapla DMPlexInterpolatedFlag - Describes level of topological interpolatedness. 849ade3219SVaclav Hapla It is a local or collective property depending on whether it is returned by DMPlexIsInterpolated() or DMPlexIsInterpolatedCollective(). 859ade3219SVaclav Hapla 869ade3219SVaclav Hapla $ DMPLEX_INTERPOLATED_INVALID - Uninitialized value (internal use only; never returned by DMPlexIsInterpolated() or DMPlexIsInterpolatedCollective()) 879ade3219SVaclav Hapla $ DMPLEX_INTERPOLATED_NONE - Mesh is not interpolated 889ade3219SVaclav Hapla $ DMPLEX_INTERPOLATED_PARTIAL - Mesh is partially interpolated. This can e.g. mean DMPlex with cells, faces and vertices but no edges represented, or a mesh with mixed cones (see DMPlexStratify() for an example) 899ade3219SVaclav Hapla $ DMPLEX_INTERPOLATED_MIXED - Can be returned only by DMPlexIsInterpolatedCollective(), meaning that DMPlexIsInterpolated() returns different interpolatedness on different ranks 909ade3219SVaclav Hapla $ DMPLEX_INTERPOLATED_FULL - Mesh is fully interpolated 919ade3219SVaclav Hapla 929ade3219SVaclav Hapla Level: intermediate 939ade3219SVaclav Hapla 949ade3219SVaclav Hapla Developer Note: 959ade3219SVaclav Hapla Any additions/changes here MUST also be made in include/petsc/finclude/petscdmplex.h and src/dm/f90-mod/petscdmplex.h 969ade3219SVaclav Hapla 979ade3219SVaclav Hapla .seealso: DMPlexIsInterpolated(), DMPlexIsInterpolatedCollective(), DMPlexInterpolate(), DMPlexUninterpolate() 989ade3219SVaclav Hapla E*/ 99a7748839SVaclav Hapla typedef enum { 1007d0f5628SVaclav Hapla DMPLEX_INTERPOLATED_INVALID = -1, 101a7748839SVaclav Hapla DMPLEX_INTERPOLATED_NONE = 0, 102a7748839SVaclav Hapla DMPLEX_INTERPOLATED_PARTIAL, 103a7748839SVaclav Hapla DMPLEX_INTERPOLATED_MIXED, 104a7748839SVaclav Hapla DMPLEX_INTERPOLATED_FULL 105a7748839SVaclav Hapla } DMPlexInterpolatedFlag; 106a7748839SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexInterpolate(DM, DM *); 107a7748839SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexUninterpolate(DM, DM *); 108a7748839SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexInterpolatePointSF(DM, PetscSF); 109a7748839SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexIsInterpolated(DM, DMPlexInterpolatedFlag *); 110a7748839SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexIsInterpolatedCollective(DM, DMPlexInterpolatedFlag *); 111a7748839SVaclav Hapla 1128b51c812SSatish Balay PETSC_EXTERN PetscErrorCode DMPlexFilter(DM, DMLabel, PetscInt, DM *); 113552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetCellNumbering(DM, IS *); 114552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetVertexNumbering(DM, IS *); 115ef48cebcSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreatePointNumbering(DM, IS *); 11608a22f4bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateRankField(DM, Vec *); 11718e14f0cSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateLabelField(DM, DMLabel, Vec *); 118552f7358SJed Brown 11975d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetDepth(DM, PetscInt *); 1203ded2ed9SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetDepthLabel(DM, DMLabel *); 12175d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetDepthStratum(DM, PetscInt, PetscInt *, PetscInt *); 12275d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetHeightStratum(DM, PetscInt, PetscInt *, PetscInt *); 123ba2698f1SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetPointDepth(DM, PetscInt, PetscInt *); 1240c0a32dcSVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexGetPointHeight(DM, PetscInt, PetscInt *); 125ba2698f1SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetCellTypeLabel(DM, DMLabel *); 126ba2698f1SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetCellType(DM, PetscInt, DMPolytopeType *); 127412e9a14SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetCellType(DM, PetscInt, DMPolytopeType); 128ba2698f1SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeCellTypes(DM); 12996ca5757SLisandro Dalcin PETSC_EXTERN PetscErrorCode DMPlexInvertCell(DMPolytopeType, PetscInt[]); 13096ca5757SLisandro Dalcin PETSC_EXTERN PetscErrorCode DMPlexReorderCell(DM, PetscInt, PetscInt[]); 13196ca5757SLisandro Dalcin 13275d3a19aSMatthew G. Knepley 13375d3a19aSMatthew G. Knepley /* Topological Operations */ 134552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 135552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetFullMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 136552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexRestoreMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 137552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 138552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetFullJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 139552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexRestoreJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 140552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetTransitiveClosure(DM, PetscInt, PetscBool, PetscInt *, PetscInt *[]); 141552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexRestoreTransitiveClosure(DM, PetscInt, PetscBool, PetscInt *, PetscInt *[]); 142552f7358SJed Brown 14375d3a19aSMatthew G. Knepley /* Mesh Generation */ 144552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGenerate(DM, const char [], PetscBool , DM *); 1453f2a96e3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGenerateRegister(const char[],PetscErrorCode (*)(DM,PetscBool,DM*),PetscErrorCode (*)(DM,PetscReal*,DM*),PetscErrorCode (*)(DM,DMLabel,DM*),PetscInt); 1463a074057SBarry Smith PETSC_EXTERN PetscErrorCode DMPlexGenerateRegisterAll(void); 1473a074057SBarry Smith PETSC_EXTERN PetscErrorCode DMPlexGenerateRegisterDestroy(void); 148930319cbSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCopyCoordinates(DM, DM); 1490fdc7489SMatthew Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateDoublet(MPI_Comm, PetscInt, PetscBool, PetscBool, PetscReal, DM *); 150768d5fceSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateBoxMesh(MPI_Comm, PetscInt, PetscBool, const PetscInt[], const PetscReal[], const PetscReal[], const DMBoundaryType[], PetscBool, DM *); 151*9318fe57SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateBoxSurfaceMesh(MPI_Comm, PetscInt, const PetscInt[], const PetscReal[], const PetscReal[], PetscBool, DM *); 15251a74b61SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateSphereMesh(MPI_Comm, PetscInt, PetscBool, PetscReal, DM *); 15351a74b61SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateBallMesh(MPI_Comm, PetscInt, PetscReal, DM *); 154*9318fe57SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateHexCylinderMesh(MPI_Comm, DMBoundaryType, DM *); 15524119c2aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateWedgeCylinderMesh(MPI_Comm, PetscInt, PetscBool, DM *); 15600dabe28SStefano Zampini PETSC_EXTERN PetscErrorCode DMPlexCreateWedgeBoxMesh(MPI_Comm, const PetscInt[], const PetscReal[], const PetscReal[], const DMBoundaryType[], PetscBool, PetscBool, DM *); 157d0fcb9c2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexExtrude(DM, PetscInt, PetscReal, PetscBool, const PetscReal[], PetscBool, DM *); 158552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreateConeSection(DM, PetscSection *); 159068a5610SStefano Zampini 160ca8062c8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCheckSymmetry(DM); 16125c50c26SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexCheckSkeleton(DM, PetscInt); 16225c50c26SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexCheckFaces(DM, PetscInt); 163bb6a34a8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCheckGeometry(DM); 16403da9461SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexCheckPointSF(DM); 165a8432d5bSVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexCheckInterfaceCones(DM); 16643fa8764SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCheckCellShape(DM, PetscBool, PetscReal); 167f108dbd7SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMPlexComputeOrthogonalQuality(DM, PetscFV, PetscReal, Vec *, DMLabel *); 16875d3a19aSMatthew G. Knepley 169d9deefdfSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexTriangleSetOptions(DM, const char *); 170776fd405SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexTetgenSetOptions(DM, const char *); 171d9deefdfSMatthew G. Knepley 172d6218766SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateFromFile(MPI_Comm, const char[], PetscBool, DM *); 173d6218766SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateExodus(MPI_Comm, PetscInt, PetscBool, DM *); 174d6218766SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateExodusFromFile(MPI_Comm, const char [], PetscBool, DM *); 175d6218766SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateCGNS(MPI_Comm, PetscInt, PetscBool, DM *); 176d6218766SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateCGNSFromFile(MPI_Comm, const char[], PetscBool, DM *); 177d6218766SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateGmsh(MPI_Comm, PetscViewer, PetscBool, DM *); 178d6218766SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateGmshFromFile(MPI_Comm, const char [], PetscBool, DM *); 179d6218766SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateFluent(MPI_Comm, PetscViewer, PetscBool, DM *); 180d6218766SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateFluentFromFile(MPI_Comm, const char [], PetscBool, DM *); 181d6218766SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateMedFromFile(MPI_Comm, const char [], PetscBool, DM *); 182f2801cd6SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreatePLYFromFile(MPI_Comm, const char [], PetscBool, DM *); 1837bee2925SMatthew Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateEGADSFromFile(MPI_Comm, const char [], DM *); 184d6218766SMatthew G. Knepley 1856823f3c5SBlaise Bourdin PETSC_EXTERN PetscErrorCode PetscViewerExodusIIOpen(MPI_Comm comm, const char name[], PetscFileMode type, PetscViewer *exo); 1861e50132fSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscViewerExodusIIGetId(PetscViewer, int *); 1876823f3c5SBlaise Bourdin PETSC_EXTERN PetscErrorCode PetscViewerExodusIISetOrder(PetscViewer,PetscInt); 1886823f3c5SBlaise Bourdin PETSC_EXTERN PetscErrorCode PetscViewerExodusIIGetOrder(PetscViewer,PetscInt*); 1891e50132fSMatthew G. Knepley 19075d3a19aSMatthew G. Knepley /* Mesh Partitioning and Distribution */ 191552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreateNeighborCSR(DM, PetscInt, PetscInt *, PetscInt **, PetscInt **); 1925680f57bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetPartitioner(DM, PetscPartitioner *); 19371bb2955SLawrence Mitchell PETSC_EXTERN PetscErrorCode DMPlexSetPartitioner(DM, PetscPartitioner); 1943fa7752dSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexCreatePartitionerGraph(DM, PetscInt, PetscInt *, PetscInt **, PetscInt **, IS *); 1951fd9873aSMichael Lange PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelInvert(DM, DMLabel, PetscSF, DMLabel); 1965abbe4feSMichael Lange PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelClosure(DM, DMLabel); 19724d039d7SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelAdjacency(DM, DMLabel); 198be200f8dSMichael Lange PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelPropagate(DM, DMLabel); 199aa3148a8SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelCreateSF(DM, DMLabel, PetscSF *); 20098ba2d7fSLawrence Mitchell PETSC_EXTERN PetscErrorCode DMPlexSetPartitionBalance(DM, PetscBool); 20198ba2d7fSLawrence Mitchell PETSC_EXTERN PetscErrorCode DMPlexGetPartitionBalance(DM, PetscBool *); 2025fa78c88SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexIsDistributed(DM, PetscBool *); 20380cf41d5SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexDistribute(DM, PetscInt, PetscSF*, DM*); 204b9f40539SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexDistributeOverlap(DM, PetscInt, PetscSF *, DM *); 205cb54e036SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexGetOverlap(DM, PetscInt *); 206552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexDistributeField(DM,PetscSF,PetscSection,Vec,PetscSection,Vec); 207b0a623aaSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexDistributeFieldIS(DM, PetscSF, PetscSection, IS, PetscSection, IS *); 208552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexDistributeData(DM,PetscSF,PetscSection,MPI_Datatype,void*,PetscSection,void**); 2098b879b41SFlorian Wechsung PETSC_EXTERN PetscErrorCode DMPlexRebalanceSharedPoints(DM, PetscInt, PetscBool, PetscBool, PetscBool*); 21045800214SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexMigrate(DM, PetscSF, DM); 211a13df41bSStefano Zampini PETSC_EXTERN PetscErrorCode DMPlexGetGatherDM(DM, PetscSF*, DM*); 212a13df41bSStefano Zampini PETSC_EXTERN PetscErrorCode DMPlexGetRedundantDM(DM, PetscSF*, DM*); 2133c1f0c11SLawrence Mitchell PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUser(DM, PetscErrorCode (*)(DM,PetscInt,PetscInt*,PetscInt[],void*),void*); 2143c1f0c11SLawrence Mitchell PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUser(DM, PetscErrorCode (**)(DM,PetscInt,PetscInt*,PetscInt[],void*),void**); 215a17985deSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM,PetscBool); 216a17985deSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM,PetscBool*); 21770034214SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetAdjacency(DM, PetscInt, PetscInt *, PetscInt *[]); 218f94b4a02SBlaise Bourdin PETSC_EXTERN PetscErrorCode DMPlexSetMigrationSF(DM, PetscSF); 219f94b4a02SBlaise Bourdin PETSC_EXTERN PetscErrorCode DMPlexGetMigrationSF(DM, PetscSF *); 22075d3a19aSMatthew G. Knepley 221c99f2573SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetOrdering(DM, MatOrderingType, DMLabel, IS *); 222f5cedc29SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexPermute(DM, IS, DM *); 223f5cedc29SMatthew G. Knepley 224b0a623aaSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateProcessSF(DM, PetscSF, IS *, PetscSF *); 225b0a623aaSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM, PetscSF, PetscSection, IS, PetscSection, IS, IS *, PetscSF *); 226b0a623aaSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexDistributeOwnership(DM, PetscSection, IS *, PetscSection, IS *); 227dccdeccaSVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexCreateOverlapLabel(DM, PetscInt, PetscSection, IS, PetscSection, IS, DMLabel *); 22846f9b1c3SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexCreateOverlapMigrationSF(DM, PetscSF, PetscSF *); 22945800214SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexStratifyMigrationSF(DM, PetscSF, PetscSF *); 230b0a623aaSMatthew G. Knepley 23175d3a19aSMatthew G. Knepley /* Submesh Support */ 232158acfadSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateSubmesh(DM, DMLabel, PetscInt, PetscBool, DM*); 2337db7e0a7SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateHybridMesh(DM, DMLabel, DMLabel, DMLabel *, DMLabel *, DM *, DM *); 234552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetSubpointMap(DM, DMLabel*); 235552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetSubpointMap(DM, DMLabel); 23697d8846cSMatthew Knepley PETSC_EXTERN PetscErrorCode DMPlexGetSubpointIS(DM, IS *); 237a6e0b375SMatthew G. Knepley 238a6e0b375SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMGetEnclosureRelation(DM, DM, DMEnclosureType *); 239a6e0b375SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMGetEnclosurePoint(DM, DM, DMEnclosureType, PetscInt, PetscInt *); 240552f7358SJed Brown 2412be2b188SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexLabelComplete(DM, DMLabel); 2420f66a230SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexLabelCohesiveComplete(DM, DMLabel, DMLabel, PetscBool, DM); 2436cf0e42fSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexLabelAddCells(DM, DMLabel); 244a6e0b375SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexLabelAddFaceCells(DM, DMLabel); 245f402d5e4SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexLabelClearCells(DM, DMLabel); 246552f7358SJed Brown 24775d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetRefinementLimit(DM, PetscReal *); 24875d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetRefinementLimit(DM, PetscReal); 24975d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetRefinementUniform(DM, PetscBool *); 25075d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetRefinementUniform(DM, PetscBool); 2511e4cba6aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetRefinementFunction(DM, PetscErrorCode (**)(const PetscReal [], PetscReal *)); 2521e4cba6aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetRefinementFunction(DM, PetscErrorCode (*)(const PetscReal [], PetscReal *)); 2532389894bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateCoarsePointIS(DM, IS *); 2540aef6b92SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetRegularRefinement(DM, PetscBool *); 2550aef6b92SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetRegularRefinement(DM, PetscBool); 256412e9a14SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetCellRefinerType(DM, DMPlexCellRefinerType *); 257412e9a14SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetCellRefinerType(DM, DMPlexCellRefinerType); 258552f7358SJed Brown 25918ad9376SMatthew G. Knepley /* Support for cell-vertex meshes */ 26018ad9376SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetNumFaceVertices(DM, PetscInt, PetscInt, PetscInt *); 261f5d69827SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetOrientedFace(DM, PetscInt, PetscInt, const PetscInt [], PetscInt, PetscInt [], PetscInt [], PetscInt [], PetscBool *); 26218ad9376SMatthew G. Knepley 2630f0bf202SMatthew G. Knepley /* Geometry Support */ 2640f0bf202SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetMinRadius(DM, PetscReal *); 2650f0bf202SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetMinRadius(DM, PetscReal); 266741bfc07SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeProjection2Dto1D(PetscScalar[], PetscReal[]); 267741bfc07SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeProjection3Dto1D(PetscScalar[], PetscReal[]); 268741bfc07SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeProjection3Dto2D(PetscInt, PetscScalar[], PetscReal[]); 2690f0bf202SMatthew G. Knepley 270c4eade1cSMatthew G. Knepley /* Point Location */ 271c4eade1cSMatthew G. Knepley typedef struct _PetscGridHash *PetscGridHash; 272c4eade1cSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscGridHashCreate(MPI_Comm, PetscInt, const PetscScalar[], PetscGridHash *); 273c4eade1cSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscGridHashEnlarge(PetscGridHash, const PetscScalar []); 274c4eade1cSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscGridHashSetGrid(PetscGridHash, const PetscInt [], const PetscReal []); 2751c6dfc3eSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscGridHashGetEnclosingBox(PetscGridHash, PetscInt, const PetscScalar [], PetscInt [], PetscInt []); 276c4eade1cSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscGridHashDestroy(PetscGridHash *); 2773985bb02SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexFindVertices(DM, PetscInt, const PetscReal [], PetscReal, PetscInt []); 278c4eade1cSMatthew G. Knepley 279834e62ceSMatthew G. Knepley /* FVM Support */ 280cc08537eSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryFVM(DM, PetscInt, PetscReal *, PetscReal [], PetscReal []); 2810f0bf202SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeGeometryFVM(DM, Vec *, Vec *); 282856ac710SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeGradientFVM(DM, PetscFV, Vec, Vec, DM *); 283b27d5b9eSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetDataFVM(DM, PetscFV, Vec *, Vec *, DM *); 284834e62ceSMatthew G. Knepley 285552f7358SJed Brown /* FEM Support */ 286cf0b7c11SKarl Rupp PETSC_EXTERN PetscErrorCode DMPlexComputeGeometryFEM(DM, Vec *); 2873e9753d6SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetGeometryFVM(DM,Vec*,Vec*,PetscReal*); 2883e9753d6SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetGradientDM(DM,PetscFV,DM*); 289bdd6f66aSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValues(DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec); 29056cf3b9cSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues(DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec); 2911c531cf8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM, PetscReal, PetscInt, PetscInt, const PetscInt[], DMLabel, PetscInt, const PetscInt[], 292b278463cSMatthew G. Knepley PetscErrorCode (*)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *, Vec); 2931c531cf8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM, PetscReal, Vec, PetscInt, PetscInt, const PetscInt[], DMLabel, PetscInt, const PetscInt [], 294b278463cSMatthew G. Knepley void (*)(PetscInt, PetscInt, PetscInt, 295b278463cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 296b278463cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 297191494d9SMatthew G. Knepley PetscReal, const PetscReal[], PetscInt, const PetscScalar[], 298b278463cSMatthew G. Knepley PetscScalar[]), 299b278463cSMatthew G. Knepley void *, Vec); 300ece3a9fcSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesEssentialBdField(DM, PetscReal, Vec, PetscInt, PetscInt, const PetscInt[], DMLabel, PetscInt, const PetscInt [], 301ece3a9fcSMatthew G. Knepley void (*)(PetscInt, PetscInt, PetscInt, 302ece3a9fcSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 303ece3a9fcSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 304ece3a9fcSMatthew G. Knepley PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], 305ece3a9fcSMatthew G. Knepley PetscScalar[]), 306ece3a9fcSMatthew G. Knepley void *, Vec); 3071c531cf8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM, PetscReal, Vec, Vec, Vec, PetscInt, PetscInt, const PetscInt[], DMLabel, PetscInt, const PetscInt [], 308b278463cSMatthew G. Knepley PetscErrorCode (*)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*), void *, Vec); 309e752be1aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexMarkBoundaryFaces(DM, PetscInt, DMLabel); 310d7ddef95SMatthew G. Knepley 311baef929fSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateSection(DM, DMLabel [], const PetscInt [], const PetscInt [], PetscInt, const PetscInt [], const IS [], const IS [], IS, PetscSection *); 312be36d101SStefano Zampini PETSC_EXTERN PetscErrorCode DMPlexGetSubdomainSection(DM, PetscSection*); 31375d3a19aSMatthew G. Knepley 3148e0841e0SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryAffineFEM(DM, PetscInt, PetscReal *, PetscReal *, PetscReal *, PetscReal *); 315dfccc68fSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryFEM(DM, PetscInt, PetscQuadrature, PetscReal *, PetscReal *, PetscReal *, PetscReal *); 316d6143a4eSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexCoordinatesToReference(DM, PetscInt, PetscInt, const PetscReal [], PetscReal[]); 3179d150b73SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexReferenceToCoordinates(DM, PetscInt, PetscInt, const PetscReal [], PetscReal[]); 3183ee9839eSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexShearGeometry(DM, DMDirection, PetscReal[]); 3190139fca9SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexRemapGeometry(DM, PetscReal, 3200139fca9SMatthew G. Knepley void (*)(PetscInt, PetscInt, PetscInt, 3210139fca9SMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 3220139fca9SMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 3230139fca9SMatthew G. Knepley PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[])); 324d6143a4eSToby Isaac 3257c1f9639SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexVecGetClosure(DM, PetscSection, Vec, PetscInt, PetscInt *, PetscScalar *[]); 3267c1f9639SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexVecRestoreClosure(DM, PetscSection, Vec, PetscInt, PetscInt *, PetscScalar *[]); 327552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexVecSetClosure(DM, PetscSection, Vec, PetscInt, const PetscScalar[], InsertMode); 3287c1f9639SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexMatSetClosure(DM, PetscSection, PetscSection, Mat, PetscInt, const PetscScalar[], InsertMode); 32971f0bbf9SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexMatSetClosureGeneral(DM, PetscSection, PetscSection, DM, PetscSection, PetscSection, Mat, PetscInt, const PetscScalar[], InsertMode); 33071f0bbf9SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetClosureIndices(DM, PetscSection, PetscSection, PetscInt, PetscBool, PetscInt *, PetscInt *[], PetscInt *, PetscScalar *[]); 33171f0bbf9SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexRestoreClosureIndices(DM, PetscSection, PetscSection, PetscInt, PetscBool, PetscInt *, PetscInt *[], PetscInt *, PetscScalar *[]); 3320405ed22SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexMatSetClosureRefined(DM, PetscSection, PetscSection, DM, PetscSection, PetscSection, Mat, PetscInt, const PetscScalar[], InsertMode); 3337c927364SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexMatGetClosureIndicesRefined(DM, PetscSection, PetscSection, DM, PetscSection, PetscSection, PetscInt, PetscInt[], PetscInt[]); 334ee72d991SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateClosureIndex(DM, PetscSection); 335bc1eb3faSJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetClosurePermutationTensor(DM, PetscInt, PetscSection); 336552f7358SJed Brown 337552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexConstructGhostCells(DM, const char [], PetscInt *, DM *); 3387db7e0a7SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexConstructCohesiveCells(DM, DMLabel, DMLabel, DM *); 339552f7358SJed Brown 340552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetVTKCellHeight(DM, PetscInt *); 341552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetVTKCellHeight(DM, PetscInt); 342552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexVTKWriteAll(PetscObject, PetscViewer); 343e6139122SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetGhostCellStratum(DM, PetscInt *, PetscInt *); 344412e9a14SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetSimplexOrBoxCells(DM, PetscInt, PetscInt *, PetscInt *); 345*9318fe57SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexIsSimplex(DM, PetscBool *); 346552f7358SJed Brown 3472f856554SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetCellFields(DM, IS, Vec, Vec, Vec, PetscScalar **, PetscScalar **, PetscScalar **); 3482f856554SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexRestoreCellFields(DM, IS, Vec, Vec, Vec, PetscScalar **, PetscScalar **, PetscScalar **); 3492f856554SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetFaceFields(DM, PetscInt, PetscInt, Vec, Vec, Vec, Vec, Vec, PetscInt *, PetscScalar **, PetscScalar **); 3502f856554SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexRestoreFaceFields(DM, PetscInt, PetscInt, Vec, Vec, Vec, Vec, Vec, PetscInt *, PetscScalar **, PetscScalar **); 3512f856554SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetFaceGeometry(DM, PetscInt, PetscInt, Vec, Vec, PetscInt *, PetscFVFaceGeom **, PetscReal **); 3522f856554SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexRestoreFaceGeometry(DM, PetscInt, PetscInt, Vec, Vec, PetscInt *, PetscFVFaceGeom **, PetscReal **); 3532f856554SMatthew G. Knepley 354552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetScale(DM, PetscUnit, PetscReal *); 355552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetScale(DM, PetscUnit, PetscReal); 356552f7358SJed Brown 357552f7358SJed Brown typedef struct { 358552f7358SJed Brown DM dm; 35928d58a37SPierre Jolivet Vec u; /* The base vector for the Jacobian action J(u) x */ 360552f7358SJed Brown Mat J; /* Preconditioner for testing */ 361552f7358SJed Brown void *user; 362552f7358SJed Brown } JacActionCtx; 363552f7358SJed Brown 364b29cfa1cSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexSetMaxProjectionHeight(DM, PetscInt); 365b29cfa1cSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetMaxProjectionHeight(DM, PetscInt*); 3661b32699bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetActivePoint(DM, PetscInt*); 3671b32699bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetActivePoint(DM, PetscInt); 368e29c0834SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexProjectFieldLocal(DM, Vec, 369e29c0834SMatthew G. Knepley void (**)(PetscInt, PetscInt, PetscInt, 370e29c0834SMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 371e29c0834SMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 372e29c0834SMatthew G. Knepley PetscReal, const PetscReal [], PetscScalar []), InsertMode, Vec); 373574a98acSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeL2DiffLocal(DM, PetscReal, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **, Vec, PetscReal *); 3740163fd50SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeL2FieldDiff(DM, PetscReal, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **, Vec, PetscReal[]); 3750163fd50SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeL2DiffVec(DM, PetscReal, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **, Vec, Vec); 376338f77d5SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeCellwiseIntegralFEM(DM, Vec, Vec, void *); 377b8feb594SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeIntegralFEM(DM, Vec, PetscScalar *, void *); 3789b6f715bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeBdIntegral(DM, Vec, DMLabel, PetscInt, const PetscInt[], 3799b6f715bSMatthew G. Knepley void (*)(PetscInt, PetscInt, PetscInt, 3809b6f715bSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 3819b6f715bSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 3829b6f715bSMatthew G. Knepley PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), 3839b6f715bSMatthew G. Knepley PetscScalar *, void *); 384cf51de39SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeInterpolatorNested(DM, DM, PetscBool, Mat, void *); 38568132eb9SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeInterpolatorGeneral(DM, DM, Mat, void *); 3861555c271SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeGradientClementInterpolant(DM, Vec, Vec); 3877c927364SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeInjectorFEM(DM, DM, VecScatter *, void *); 3882cb13a97SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeMassMatrixNested(DM, DM, Mat, void *); 3892cb13a97SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeMassMatrixGeneral(DM, DM, Mat, void *); 3901c41a8caSMatthew G. Knepley 39156cf3b9cSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateRigidBody(DM, PetscInt, MatNullSpace *); 392fd86e548SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateRigidBodies(DM, PetscInt, DMLabel, const PetscInt[], const PetscInt[], MatNullSpace *); 393026175e5SToby Isaac 3949f520fc2SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexSetSNESLocalFEM(DM,void *,void *,void *); 395bdd6f66aSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexSNESComputeBoundaryFEM(DM, Vec, void *); 3960f2d7e86SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSNESComputeResidualFEM(DM, Vec, Vec, void *); 3970f2d7e86SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSNESComputeJacobianFEM(DM, Vec, Mat, Mat, void *); 3987a73cf09SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeJacobianAction(DM, IS, PetscReal, PetscReal, Vec, Vec, Vec, Vec, void *); 39945480ffeSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeBdResidualSingle(DM, PetscReal, PetscWeakForm, DMLabel, PetscInt, const PetscInt[], PetscInt, Vec, Vec, Vec); 40045480ffeSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeBdJacobianSingle(DM, PetscReal, PetscWeakForm, DMLabel, PetscInt, const PetscInt[], PetscInt, Vec, Vec, PetscReal, Mat, Mat); 4010f2d7e86SMatthew G. Knepley 402ef68eab9SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexTSComputeBoundary(DM, PetscReal, Vec, Vec, void *); 403924a1b8fSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexTSComputeRHSFunctionFVM(DM, PetscReal, Vec, Vec, void *); 404adbe6fbbSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexTSComputeIFunctionFEM(DM, PetscReal, Vec, Vec, Vec, void *); 405756a1f44SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexTSComputeIJacobianFEM(DM, PetscReal, Vec, Vec, PetscReal, Mat, Mat, void *); 406adbe6fbbSMatthew G. Knepley 4071c41a8caSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeRHSFunctionFVM(DM, PetscReal, Vec, Vec, void *); 4085d16530eSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexReconstructGradientsFVM(DM,Vec,Vec); 409a68b90caSToby Isaac 410a17985deSToby Isaac /* anchors */ 411a17985deSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetAnchors(DM, PetscSection*, IS*); 412a17985deSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexSetAnchors(DM, PetscSection, IS); 413d6a7ad0dSToby Isaac /* tree */ 414d6a7ad0dSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexSetReferenceTree(DM, DM); 415d6a7ad0dSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetReferenceTree(DM, DM*); 416dcbd3bf7SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexReferenceTreeGetChildSymmetry(DM, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, PetscInt *); 417da43764aSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexCreateDefaultReferenceTree(MPI_Comm, PetscInt, PetscBool, DM*); 418b2f41788SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexSetTree(DM, PetscSection, PetscInt [], PetscInt []); 419b2f41788SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetTree(DM, PetscSection *, PetscInt *[], PetscInt *[], PetscSection *, PetscInt *[]); 420d961a43aSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetTreeParent(DM, PetscInt, PetscInt *, PetscInt *); 421d961a43aSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetTreeChildren(DM, PetscInt, PetscInt *, const PetscInt *[]); 4226f5f1567SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexTreeRefineCell(DM, PetscInt, DM *); 4233b490a17SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexComputeInjectorReferenceTree(DM, Mat *); 424bbcf1e96SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexTransferVecTree(DM,Vec,DM,Vec,PetscSF,PetscSF,PetscInt *,PetscInt *,PetscBool,PetscReal); 425fa534816SMatthew G. Knepley 426c0f0dcc3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexMonitorThroughput(DM, void *); 427c0f0dcc3SMatthew G. Knepley 428fa534816SMatthew G. Knepley /* natural order */ 429fa534816SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateGlobalToNaturalSF(DM, PetscSection, PetscSF, PetscSF *); 430f94b4a02SBlaise Bourdin PETSC_EXTERN PetscErrorCode DMPlexSetGlobalToNaturalSF(DM, PetscSF); 431f94b4a02SBlaise Bourdin PETSC_EXTERN PetscErrorCode DMPlexGetGlobalToNaturalSF(DM, PetscSF *); 432fa534816SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGlobalToNaturalBegin(DM, Vec, Vec); 433fa534816SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGlobalToNaturalEnd(DM, Vec, Vec); 434fa534816SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexNaturalToGlobalBegin(DM, Vec, Vec); 435fa534816SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexNaturalToGlobalEnd(DM, Vec, Vec); 4360bbe5d31Sbarral 4370bbe5d31Sbarral /* mesh adaptation */ 4380f7e110dSbarral PETSC_EXTERN PetscErrorCode DMPlexAdapt(DM, Vec, const char [], DM *); 439a8ededdfSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSnapToGeomModel(DM, PetscInt, const PetscScalar[], PetscScalar[]); 440ca3d3a14SMatthew G. Knepley 441ca3d3a14SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGlobalToLocalBasis(DM, Vec); 442ca3d3a14SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexLocalToGlobalBasis(DM, Vec); 443ca3d3a14SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateBasisRotation(DM, PetscReal, PetscReal, PetscReal); 444412e9a14SMatthew G. Knepley 445412e9a14SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCellRefinerCreate(DM, DMPlexCellRefiner *); 446412e9a14SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCellRefinerSetUp(DMPlexCellRefiner); 447412e9a14SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCellRefinerDestroy(DMPlexCellRefiner *); 4483f2a96e3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCellRefinerRefine(DMPlexCellRefiner, DMPolytopeType, PetscInt, PetscInt *, PetscInt *, DMPolytopeType *[], PetscInt *[], PetscInt *[], PetscInt *[]); 449412e9a14SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCellRefinerGetAffineTransforms(DMPlexCellRefiner, DMPolytopeType, PetscInt *, PetscReal *[], PetscReal *[], PetscReal *[]); 450412e9a14SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCellRefinerGetAffineFaceTransforms(DMPlexCellRefiner, DMPolytopeType, PetscInt *, PetscReal *[], PetscReal *[], PetscReal *[], PetscReal *[]); 451412e9a14SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexRefineUniform(DM, DMPlexCellRefiner, DM *); 452e0eea495SMark 453dec9e869Sksagiyam PETSC_EXTERN PetscErrorCode DMPlexTopologyLoad(DM, PetscViewer, PetscSF*); 4543e701f1cSksagiyam PETSC_EXTERN PetscErrorCode DMPlexCoordinatesLoad(DM, PetscViewer); 455b08ad5deSksagiyam PETSC_EXTERN PetscErrorCode DMPlexLabelsLoad(DM, PetscViewer); 456ea8e1828Sksagiyam 457552f7358SJed Brown #endif 458