1a4963045SJacob Faibussowitsch #pragma once 21e25c274SJed Brown 3ac09b921SBarry Smith /* SUBMANSEC = DM */ 4ac09b921SBarry Smith 51e25c274SJed Brown /*S 616a05f60SBarry Smith DM - Abstract PETSc object that manages an abstract grid-like object and its interactions with the algebraic solvers 71e25c274SJed Brown 81e25c274SJed Brown Level: intermediate 91e25c274SJed Brown 101cc06b55SBarry Smith .seealso: [](ch_dmbase), `DMType`, `DMGetType()`, `DMCompositeCreate()`, `DMDACreate()`, `DMSetType()`, `DMType`, `DMDA`, `DMPLEX` 111e25c274SJed Brown S*/ 121e25c274SJed Brown typedef struct _p_DM *DM; 131e25c274SJed Brown 14bff4a2f0SMatthew G. Knepley /*E 1516a05f60SBarry Smith DMBoundaryType - Describes the choice for the filling of ghost cells on physical domain boundaries. 1616a05f60SBarry Smith 1716a05f60SBarry Smith Values: 1816a05f60SBarry Smith + `DM_BOUNDARY_NONE` - no ghost nodes 1916a05f60SBarry Smith . `DM_BOUNDARY_GHOSTED` - ghost vertices/cells exist but aren't filled; you can put values into them and then apply a stencil that uses those ghost locations 2016a05f60SBarry Smith . `DM_BOUNDARY_MIRROR` - the ghost value is the same as the value 1 grid point in; that is, the 0th grid point in the real mesh acts like a mirror to define 2116a05f60SBarry Smith the ghost point value; not yet implemented for 3d 2216a05f60SBarry Smith . `DM_BOUNDARY_PERIODIC` - ghost vertices/cells filled by the opposite edge of the domain 2316a05f60SBarry Smith - `DM_BOUNDARY_TWIST` - like periodic, only glued backwards like a Mobius strip 24bff4a2f0SMatthew G. Knepley 25bff4a2f0SMatthew G. Knepley Level: beginner 26bff4a2f0SMatthew G. Knepley 27dbb368e6SPatrick Sanan Notes: 28dbb368e6SPatrick Sanan This is information for the boundary of the __PHYSICAL__ domain. It has nothing to do with boundaries between 2987497f52SBarry Smith processes. That width is always determined by the stencil width; see `DMDASetStencilWidth()`. 30bff4a2f0SMatthew G. Knepley 3187497f52SBarry Smith If the physical grid points have values 0 1 2 3 with `DM_BOUNDARY_MIRROR` then the local vector with ghost points has the values 1 0 1 2 3 2. 32288e7d53SBarry Smith 33*1d27aa22SBarry Smith See <https://scicomp.stackexchange.com/questions/5355/writing-the-poisson-equation-finite-difference-matrix-with-neumann-boundary-cond> 34*1d27aa22SBarry Smith 3595bd0b28SBarry Smith Developer Note: 3687497f52SBarry Smith Should `DM_BOUNDARY_MIRROR` have the same meaning with DMDA_Q0, that is a staggered grid? In that case should the ghost point have the same value 37288e7d53SBarry Smith as the 0th grid point where the physical boundary serves as the mirror? 38288e7d53SBarry Smith 3916a05f60SBarry Smith .seealso: `DM`, `DMDA`, `DMDASetBoundaryType()`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMDACreate()` 40bff4a2f0SMatthew G. Knepley E*/ 419371c9d4SSatish Balay typedef enum { 429371c9d4SSatish Balay DM_BOUNDARY_NONE, 439371c9d4SSatish Balay DM_BOUNDARY_GHOSTED, 449371c9d4SSatish Balay DM_BOUNDARY_MIRROR, 459371c9d4SSatish Balay DM_BOUNDARY_PERIODIC, 469371c9d4SSatish Balay DM_BOUNDARY_TWIST 479371c9d4SSatish Balay } DMBoundaryType; 4816a05f60SBarry Smith 4962a38674SMatthew G. Knepley /*E 509dc85fa5SMatthew G. Knepley DMBoundaryConditionType - indicates what type of boundary condition is to be imposed 519dc85fa5SMatthew G. Knepley 5216a05f60SBarry Smith Values: 5316a05f60SBarry Smith + `DM_BC_ESSENTIAL` - A Dirichlet condition using a function of the coordinates 5416a05f60SBarry Smith . `DM_BC_ESSENTIAL_FIELD` - A Dirichlet condition using a function of the coordinates and auxiliary field data 5516a05f60SBarry Smith . `DM_BC_ESSENTIAL_BD_FIELD` - A Dirichlet condition using a function of the coordinates, facet normal, and auxiliary field data 5616a05f60SBarry Smith . `DM_BC_NATURAL` - A Neumann condition using a function of the coordinates 5716a05f60SBarry Smith . `DM_BC_NATURAL_FIELD` - A Neumann condition using a function of the coordinates and auxiliary field data 5816a05f60SBarry Smith - `DM_BC_NATURAL_RIEMANN` - A flux condition which determines the state in ghost cells 599dc85fa5SMatthew G. Knepley 609dc85fa5SMatthew G. Knepley Level: beginner 619dc85fa5SMatthew G. Knepley 6216a05f60SBarry Smith Note: 6316a05f60SBarry Smith The user can check whether a boundary condition is essential using (type & `DM_BC_ESSENTIAL`), and similarly for 6416a05f60SBarry Smith natural conditions (type & `DM_BC_NATURAL`) 6516a05f60SBarry Smith 6616a05f60SBarry Smith .seealso: `DM`, `DMAddBoundary()`, `DSAddBoundary()`, `DSGetBoundary()` 679dc85fa5SMatthew G. Knepley E*/ 689371c9d4SSatish Balay typedef enum { 699371c9d4SSatish Balay DM_BC_ESSENTIAL = 1, 709371c9d4SSatish Balay DM_BC_ESSENTIAL_FIELD = 5, 719371c9d4SSatish Balay DM_BC_NATURAL = 2, 729371c9d4SSatish Balay DM_BC_NATURAL_FIELD = 6, 739371c9d4SSatish Balay DM_BC_ESSENTIAL_BD_FIELD = 9, 749371c9d4SSatish Balay DM_BC_NATURAL_RIEMANN = 10 759371c9d4SSatish Balay } DMBoundaryConditionType; 769dc85fa5SMatthew G. Knepley 779dc85fa5SMatthew G. Knepley /*E 7862a38674SMatthew G. Knepley DMPointLocationType - Describes the method to handle point location failure 7962a38674SMatthew G. Knepley 8016a05f60SBarry Smith Values: 8116a05f60SBarry Smith + `DM_POINTLOCATION_NONE` - return a negative cell number 8216a05f60SBarry Smith . `DM_POINTLOCATION_NEAREST` - the (approximate) nearest point in the mesh is used 8316a05f60SBarry Smith - `DM_POINTLOCATION_REMOVE` - returns values only for points which were located 8462a38674SMatthew G. Knepley 8516a05f60SBarry Smith Level: intermediate 8662a38674SMatthew G. Knepley 8716a05f60SBarry Smith .seealso: `DM`, `DMLocatePoints()` 8862a38674SMatthew G. Knepley E*/ 899371c9d4SSatish Balay typedef enum { 909371c9d4SSatish Balay DM_POINTLOCATION_NONE, 919371c9d4SSatish Balay DM_POINTLOCATION_NEAREST, 929371c9d4SSatish Balay DM_POINTLOCATION_REMOVE 939371c9d4SSatish Balay } DMPointLocationType; 9462a38674SMatthew G. Knepley 955675c177SMatthew G. Knepley /*E 96863027abSJed Brown DMBlockingType - Describes how to choose variable block sizes 97863027abSJed Brown 9816a05f60SBarry Smith Values: 9916a05f60SBarry Smith + `DM_BLOCKING_TOPOLOGICAL_POINT` - select all fields at a topological point (cell center, at a face, etc) 10016a05f60SBarry Smith - `DM_BLOCKING_FIELD_NODE` - using a separate block for each field at a topological point 10116a05f60SBarry Smith 102863027abSJed Brown Level: intermediate 103863027abSJed Brown 10416a05f60SBarry Smith Note: 105863027abSJed Brown When using `PCVPBJACOBI`, one can choose to block by topological point (all fields at a cell center, at a face, etc.) 106863027abSJed Brown or by field nodes (using number of components per field to identify "nodes"). Field nodes lead to smaller blocks, but 107863027abSJed Brown may converge more slowly. For example, a cubic Lagrange hexahedron will have one node at vertices, two at edges, four 108863027abSJed Brown at faces, and eight at cell centers. If using point blocking, the `PCVPBJACOBI` preconditioner will work with block 109863027abSJed Brown sizes up to 8 Lagrange nodes. For 5-component CFD, this produces matrices up to 40x40, which increases memory 11016a05f60SBarry Smith footprint and may harm performance. With field node blocking, the maximum block size will correspond to one Lagrange node, 111863027abSJed Brown or 5x5 blocks for the CFD example. 112863027abSJed Brown 113863027abSJed Brown .seealso: `PCVPBJACOBI`, `MatSetVariableBlockSizes()`, `DMSetBlockingType()` 114863027abSJed Brown E*/ 115863027abSJed Brown typedef enum { 1160e762ea3SJed Brown DM_BLOCKING_TOPOLOGICAL_POINT, 117863027abSJed Brown DM_BLOCKING_FIELD_NODE 118863027abSJed Brown } DMBlockingType; 119863027abSJed Brown 120863027abSJed Brown /*E 121174e7490SMatthew G. Knepley DMAdaptationStrategy - Describes the strategy used for adaptive solves 1225675c177SMatthew G. Knepley 12316a05f60SBarry Smith Values: 12416a05f60SBarry Smith + `DM_ADAPTATION_INITIAL` - refine a mesh based on an initial guess 12516a05f60SBarry Smith . `DM_ADAPTATION_SEQUENTIAL` - refine the mesh based on a sequence of solves, much like grid sequencing 12616a05f60SBarry Smith - `DM_ADAPTATION_MULTILEVEL` - use the sequence of constructed meshes in a multilevel solve, much like the Systematic Upscaling of Brandt 12716a05f60SBarry Smith 1285675c177SMatthew G. Knepley Level: beginner 1295675c177SMatthew G. Knepley 13016a05f60SBarry Smith .seealso: `DM`, `DMAdaptor`, `DMAdaptationCriterion`, `DMAdaptorSolve()` 1315675c177SMatthew G. Knepley E*/ 1329371c9d4SSatish Balay typedef enum { 1339371c9d4SSatish Balay DM_ADAPTATION_INITIAL, 1349371c9d4SSatish Balay DM_ADAPTATION_SEQUENTIAL, 1359371c9d4SSatish Balay DM_ADAPTATION_MULTILEVEL 1369371c9d4SSatish Balay } DMAdaptationStrategy; 137174e7490SMatthew G. Knepley 138174e7490SMatthew G. Knepley /*E 139174e7490SMatthew G. Knepley DMAdaptationCriterion - Describes the test used to decide whether to coarsen or refine parts of the mesh 140174e7490SMatthew G. Knepley 14116a05f60SBarry Smith Values: 14216a05f60SBarry Smith + `DM_ADAPTATION_REFINE` - uniformly refine a mesh, much like grid sequencing 14316a05f60SBarry Smith . `DM_ADAPTATION_LABEL` - adapt the mesh based upon a label of the cells filled with `DMAdaptFlag` markers. 14416a05f60SBarry Smith . `DM_ADAPTATION_METRIC` - try to mesh the manifold described by the input metric tensor uniformly. PETSc can also construct such a metric based 14516a05f60SBarry Smith upon an input primal or a gradient field. 14616a05f60SBarry Smith - `DM_ADAPTATION_NONE` - do no adaptation 14716a05f60SBarry Smith 148174e7490SMatthew G. Knepley Level: beginner 149174e7490SMatthew G. Knepley 15016a05f60SBarry Smith .seealso: `DM`, `DMAdaptor`, `DMAdaptationStrategy`, `DMAdaptorSolve()` 151174e7490SMatthew G. Knepley E*/ 1529371c9d4SSatish Balay typedef enum { 1539371c9d4SSatish Balay DM_ADAPTATION_NONE, 1549371c9d4SSatish Balay DM_ADAPTATION_REFINE, 1559371c9d4SSatish Balay DM_ADAPTATION_LABEL, 1569371c9d4SSatish Balay DM_ADAPTATION_METRIC 1579371c9d4SSatish Balay } DMAdaptationCriterion; 1585675c177SMatthew G. Knepley 1599dc85fa5SMatthew G. Knepley /*E 16016a05f60SBarry Smith DMAdaptFlag - Marker in the label prescribing what adaptation to perform 16116a05f60SBarry Smith 16216a05f60SBarry Smith Values: 16316a05f60SBarry Smith + `DM_ADAPT_DETERMINE` - undocumented 16416a05f60SBarry Smith . `DM_ADAPT_KEEP` - undocumented 16516a05f60SBarry Smith . `DM_ADAPT_REFINE` - undocumented 16616a05f60SBarry Smith . `DM_ADAPT_COARSEN` - undocumented 16716a05f60SBarry Smith - `DM_ADAPT_COARSEN_LAST` - undocumented 1689dc85fa5SMatthew G. Knepley 1699dc85fa5SMatthew G. Knepley Level: beginner 1709dc85fa5SMatthew G. Knepley 17116a05f60SBarry Smith .seealso: `DM`, `DMAdaptor`, `DMAdaptationStrategy`, `DMAdaptationCriterion`, `DMAdaptorSolve()`, `DMAdaptLabel()` 1729dc85fa5SMatthew G. Knepley E*/ 1739371c9d4SSatish Balay typedef enum { 1749371c9d4SSatish Balay DM_ADAPT_DETERMINE = PETSC_DETERMINE, 1759371c9d4SSatish Balay DM_ADAPT_KEEP = 0, 1769371c9d4SSatish Balay DM_ADAPT_REFINE, 1779371c9d4SSatish Balay DM_ADAPT_COARSEN, 1789371c9d4SSatish Balay DM_ADAPT_COARSEN_LAST, 1799371c9d4SSatish Balay DM_ADAPT_RESERVED_COUNT 1809371c9d4SSatish Balay } DMAdaptFlag; 1813ee9839eSMatthew G. Knepley 1823ee9839eSMatthew G. Knepley /*E 1833ee9839eSMatthew G. Knepley DMDirection - Indicates a coordinate direction 1843ee9839eSMatthew G. Knepley 18516a05f60SBarry Smith Values: 18616a05f60SBarry Smith + `DM_X` - the x coordinate direction 18716a05f60SBarry Smith . `DM_Y` - the y coordinate direction 18816a05f60SBarry Smith - `DM_Z` - the z coordinate direction 18916a05f60SBarry Smith 1903ee9839eSMatthew G. Knepley Level: beginner 1913ee9839eSMatthew G. Knepley 19216a05f60SBarry Smith .seealso: `DM`, `DMDA`, `DMDAGetRay()`, `DMDAGetProcessorSubset()`, `DMPlexShearGeometry()` 1933ee9839eSMatthew G. Knepley E*/ 1949371c9d4SSatish Balay typedef enum { 1959371c9d4SSatish Balay DM_X, 1969371c9d4SSatish Balay DM_Y, 1979371c9d4SSatish Balay DM_Z 1989371c9d4SSatish Balay } DMDirection; 1999dc85fa5SMatthew G. Knepley 200a6e0b375SMatthew G. Knepley /*E 20187497f52SBarry Smith DMEnclosureType - The type of enclosure relation between one `DM` and another 202a6e0b375SMatthew G. Knepley 20316a05f60SBarry Smith Values: 20416a05f60SBarry Smith + `DM_ENC_SUBMESH` - the `DM` is the boundary of another `DM` 20516a05f60SBarry Smith . `DM_ENC_SUPERMESH` - the `DM` has the boundary of another `DM` (the reverse situation to `DM_ENC_SUBMESH`) 206f826b5fcSPierre Jolivet . `DM_ENC_EQUALITY` - unknown what this means 207f826b5fcSPierre Jolivet . `DM_ENC_NONE` - no relationship can be determined 20816a05f60SBarry Smith - `DM_ENC_UNKNOWN` - the relationship is unknown 20916a05f60SBarry Smith 210a6e0b375SMatthew G. Knepley Level: beginner 211a6e0b375SMatthew G. Knepley 21216a05f60SBarry Smith .seealso: `DM`, `DMGetEnclosureRelation()` 213a6e0b375SMatthew G. Knepley E*/ 2149371c9d4SSatish Balay typedef enum { 2159371c9d4SSatish Balay DM_ENC_EQUALITY, 2169371c9d4SSatish Balay DM_ENC_SUPERMESH, 2179371c9d4SSatish Balay DM_ENC_SUBMESH, 2189371c9d4SSatish Balay DM_ENC_NONE, 2199371c9d4SSatish Balay DM_ENC_UNKNOWN 2209371c9d4SSatish Balay } DMEnclosureType; 221ba2698f1SMatthew G. Knepley 222ba2698f1SMatthew G. Knepley /*E 223ba2698f1SMatthew G. Knepley DMPolytopeType - This describes the polytope represented by each cell. 224ba2698f1SMatthew G. Knepley 225ba2698f1SMatthew G. Knepley Level: beginner 226ba2698f1SMatthew G. Knepley 22787497f52SBarry Smith While most operations only need the topology information in the `DMPLEX`, we must sometimes have the 228ba2698f1SMatthew G. Knepley user specify a polytope. For instance, when interpolating from a cell-vertex mesh, the type of 22987497f52SBarry Smith polytope can be ambiguous. Also, `DMPLEX` allows different symmetries of a prism cell with the same 2309c89aa79SPierre Jolivet constituent points. Normally these types are automatically inferred and the user does not specify 231ba2698f1SMatthew G. Knepley them. 232ba2698f1SMatthew G. Knepley 23316a05f60SBarry Smith .seealso: `DM`, `DMPlexComputeCellTypes()` 234ba2698f1SMatthew G. Knepley E*/ 2359371c9d4SSatish Balay typedef enum { 2369371c9d4SSatish Balay DM_POLYTOPE_POINT, 2379371c9d4SSatish Balay DM_POLYTOPE_SEGMENT, 2389371c9d4SSatish Balay DM_POLYTOPE_POINT_PRISM_TENSOR, 2399371c9d4SSatish Balay DM_POLYTOPE_TRIANGLE, 2409371c9d4SSatish Balay DM_POLYTOPE_QUADRILATERAL, 2419371c9d4SSatish Balay DM_POLYTOPE_SEG_PRISM_TENSOR, 2429371c9d4SSatish Balay DM_POLYTOPE_TETRAHEDRON, 2439371c9d4SSatish Balay DM_POLYTOPE_HEXAHEDRON, 2449371c9d4SSatish Balay DM_POLYTOPE_TRI_PRISM, 2459371c9d4SSatish Balay DM_POLYTOPE_TRI_PRISM_TENSOR, 2469371c9d4SSatish Balay DM_POLYTOPE_QUAD_PRISM_TENSOR, 2479371c9d4SSatish Balay DM_POLYTOPE_PYRAMID, 2489371c9d4SSatish Balay DM_POLYTOPE_FV_GHOST, 2499371c9d4SSatish Balay DM_POLYTOPE_INTERIOR_GHOST, 2509371c9d4SSatish Balay DM_POLYTOPE_UNKNOWN, 2519371c9d4SSatish Balay DM_NUM_POLYTOPES 2529371c9d4SSatish Balay } DMPolytopeType; 253ba2698f1SMatthew G. Knepley PETSC_EXTERN const char *const DMPolytopeTypes[]; 254a6e0b375SMatthew G. Knepley 2559dc85fa5SMatthew G. Knepley /*E 2569dc85fa5SMatthew G. Knepley PetscUnit - The seven fundamental SI units 2579dc85fa5SMatthew G. Knepley 2589dc85fa5SMatthew G. Knepley Level: beginner 2599dc85fa5SMatthew G. Knepley 260db781477SPatrick Sanan .seealso: `DMPlexGetScale()`, `DMPlexSetScale()` 2619dc85fa5SMatthew G. Knepley E*/ 2629371c9d4SSatish Balay typedef enum { 2639371c9d4SSatish Balay PETSC_UNIT_LENGTH, 2649371c9d4SSatish Balay PETSC_UNIT_MASS, 2659371c9d4SSatish Balay PETSC_UNIT_TIME, 2669371c9d4SSatish Balay PETSC_UNIT_CURRENT, 2679371c9d4SSatish Balay PETSC_UNIT_TEMPERATURE, 2689371c9d4SSatish Balay PETSC_UNIT_AMOUNT, 2699371c9d4SSatish Balay PETSC_UNIT_LUMINOSITY, 2709371c9d4SSatish Balay NUM_PETSC_UNITS 2719371c9d4SSatish Balay } PetscUnit; 2729dc85fa5SMatthew G. Knepley 273b2b58855SToby Isaac /*S 274b2b58855SToby Isaac DMField - PETSc object for defining a field on a mesh topology 275b2b58855SToby Isaac 276b2b58855SToby Isaac Level: intermediate 277b2b58855SToby Isaac S*/ 278b2b58855SToby Isaac typedef struct _p_DMField *DMField; 279b2b58855SToby Isaac 2800fdc7489SMatthew Knepley /*S 28187497f52SBarry Smith DMUniversalLabel - A label that encodes a set of `DMLabel`s, bijectively 2820fdc7489SMatthew Knepley 2830fdc7489SMatthew Knepley Level: developer 2840fdc7489SMatthew Knepley S*/ 2850fdc7489SMatthew Knepley typedef struct _p_UniversalLabel *DMUniversalLabel; 2860fdc7489SMatthew Knepley 287d2b2dc1eSMatthew G. Knepley typedef struct _PETSc_DMCEED *DMCeed; 288d2b2dc1eSMatthew G. Knepley 289c0517cd5SMatthew G. Knepley typedef struct _n_DMGeneratorFunctionList *DMGeneratorFunctionList; 290