xref: /petsc/include/petscdt.h (revision ea1b28ebf1c8fda166ad105e43002031efe36b66)
137045ce4SJed Brown /*
237045ce4SJed Brown   Common tools for constructing discretizations
337045ce4SJed Brown */
426bd1501SBarry Smith #if !defined(PETSCDT_H)
526bd1501SBarry Smith #define PETSCDT_H
637045ce4SJed Brown 
737045ce4SJed Brown #include <petscsys.h>
837045ce4SJed Brown 
92cd22861SMatthew G. Knepley PETSC_EXTERN PetscClassId PETSCQUADRATURE_CLASSID;
102cd22861SMatthew G. Knepley 
1121454ff5SMatthew G. Knepley /*S
1221454ff5SMatthew G. Knepley   PetscQuadrature - Quadrature rule for integration.
1321454ff5SMatthew G. Knepley 
14329bbf4eSMatthew G. Knepley   Level: beginner
1521454ff5SMatthew G. Knepley 
1621454ff5SMatthew G. Knepley .seealso:  PetscQuadratureCreate(), PetscQuadratureDestroy()
1721454ff5SMatthew G. Knepley S*/
1821454ff5SMatthew G. Knepley typedef struct _p_PetscQuadrature *PetscQuadrature;
1921454ff5SMatthew G. Knepley 
208272889dSSatish Balay /*E
21916e780bShannah_mairs   PetscGaussLobattoLegendreCreateType - algorithm used to compute the Gauss-Lobatto-Legendre nodes and weights
228272889dSSatish Balay 
238272889dSSatish Balay   Level: intermediate
248272889dSSatish Balay 
25f2e8fe4dShannah_mairs $  PETSCGAUSSLOBATTOLEGENDRE_VIA_LINEAR_ALGEBRA - compute the nodes via linear algebra
26d410ae54Shannah_mairs $  PETSCGAUSSLOBATTOLEGENDRE_VIA_NEWTON - compute the nodes by solving a nonlinear equation with Newton's method
278272889dSSatish Balay 
288272889dSSatish Balay E*/
29f2e8fe4dShannah_mairs typedef enum {PETSCGAUSSLOBATTOLEGENDRE_VIA_LINEAR_ALGEBRA,PETSCGAUSSLOBATTOLEGENDRE_VIA_NEWTON} PetscGaussLobattoLegendreCreateType;
308272889dSSatish Balay 
31d4afb720SToby Isaac /*E
32d4afb720SToby Isaac   PetscDTNodeType - A description of strategies for generating nodes (both
33d4afb720SToby Isaac   quadrature nodes and nodes for Lagrange polynomials)
34d4afb720SToby Isaac 
35d4afb720SToby Isaac   Level: intermediate
36d4afb720SToby Isaac 
37d4afb720SToby Isaac $  PETSCDTNODES_DEFAULT - Nodes chosen by PETSc
38d4afb720SToby Isaac $  PETSCDTNODES_GAUSSJACOBI - Nodes at either Gauss-Jacobi or Gauss-Lobatto-Jacobi quadrature points
39d4afb720SToby Isaac $  PETSCDTNODES_EQUISPACED - Nodes equispaced either including the endpoints or excluding them
40d4afb720SToby Isaac $  PETSCDTNODES_TANHSINH - Nodes at Tanh-Sinh quadrature points
41d4afb720SToby Isaac 
42d4afb720SToby Isaac   Note: a PetscDTNodeType can be paired with a PetscBool to indicate whether
43d4afb720SToby Isaac   the nodes include endpoints or not, and in the case of PETSCDT_GAUSSJACOBI
44d4afb720SToby Isaac   with exponents for the weight function.
45d4afb720SToby Isaac 
46d4afb720SToby Isaac E*/
47d4afb720SToby Isaac typedef enum {PETSCDTNODES_DEFAULT=-1, PETSCDTNODES_GAUSSJACOBI, PETSCDTNODES_EQUISPACED, PETSCDTNODES_TANHSINH} PetscDTNodeType;
48d4afb720SToby Isaac 
49d4afb720SToby Isaac PETSC_EXTERN const char *const PetscDTNodeTypes[];
50d4afb720SToby Isaac 
5121454ff5SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscQuadratureCreate(MPI_Comm, PetscQuadrature *);
52c9638911SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscQuadratureDuplicate(PetscQuadrature, PetscQuadrature *);
53bcede257SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscQuadratureGetOrder(PetscQuadrature, PetscInt*);
54bcede257SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscQuadratureSetOrder(PetscQuadrature, PetscInt);
55a6b92713SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscQuadratureGetNumComponents(PetscQuadrature, PetscInt*);
56a6b92713SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscQuadratureSetNumComponents(PetscQuadrature, PetscInt);
574f9ab2b4SJed Brown PETSC_EXTERN PetscErrorCode PetscQuadratureEqual(PetscQuadrature, PetscQuadrature, PetscBool*);
58a6b92713SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscQuadratureGetData(PetscQuadrature, PetscInt*, PetscInt*, PetscInt*, const PetscReal *[], const PetscReal *[]);
59a6b92713SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscQuadratureSetData(PetscQuadrature, PetscInt, PetscInt, PetscInt, const PetscReal [], const PetscReal []);
6021454ff5SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscQuadratureView(PetscQuadrature, PetscViewer);
6121454ff5SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscQuadratureDestroy(PetscQuadrature *);
62a0845e3aSMatthew G. Knepley 
632df84da0SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscDTTensorQuadratureCreate(PetscQuadrature, PetscQuadrature, PetscQuadrature *);
6489710940SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscQuadratureExpandComposite(PetscQuadrature, PetscInt, const PetscReal[], const PetscReal[], PetscQuadrature *);
6589710940SMatthew G. Knepley 
66907761f8SToby Isaac PETSC_EXTERN PetscErrorCode PetscQuadraturePushForward(PetscQuadrature, PetscInt, const PetscReal[], const PetscReal[], const PetscReal[], PetscInt, PetscQuadrature *);
67907761f8SToby Isaac 
6837045ce4SJed Brown PETSC_EXTERN PetscErrorCode PetscDTLegendreEval(PetscInt,const PetscReal*,PetscInt,const PetscInt*,PetscReal*,PetscReal*,PetscReal*);
69fbdc3dfeSToby Isaac PETSC_EXTERN PetscErrorCode PetscDTJacobiNorm(PetscReal,PetscReal,PetscInt,PetscReal *);
7094e21283SToby Isaac PETSC_EXTERN PetscErrorCode PetscDTJacobiEval(PetscInt,PetscReal,PetscReal,const PetscReal*,PetscInt,const PetscInt*,PetscReal*,PetscReal*,PetscReal*);
71fbdc3dfeSToby Isaac PETSC_EXTERN PetscErrorCode PetscDTJacobiEvalJet(PetscReal,PetscReal,PetscInt,const PetscReal[],PetscInt,PetscInt,PetscReal[]);
72fbdc3dfeSToby Isaac PETSC_EXTERN PetscErrorCode PetscDTPKDEvalJet(PetscInt,PetscInt,const PetscReal[],PetscInt,PetscInt,PetscReal[]);
73d8f25ad8SToby Isaac PETSC_EXTERN PetscErrorCode PetscDTPTrimmedSize(PetscInt,PetscInt,PetscInt,PetscInt*);
74d8f25ad8SToby Isaac PETSC_EXTERN PetscErrorCode PetscDTPTrimmedEvalJet(PetscInt,PetscInt,const PetscReal[],PetscInt,PetscInt,PetscInt,PetscReal[]);
7537045ce4SJed Brown PETSC_EXTERN PetscErrorCode PetscDTGaussQuadrature(PetscInt,PetscReal,PetscReal,PetscReal*,PetscReal*);
7694e21283SToby Isaac PETSC_EXTERN PetscErrorCode PetscDTGaussJacobiQuadrature(PetscInt,PetscReal,PetscReal,PetscReal,PetscReal,PetscReal*,PetscReal*);
7794e21283SToby Isaac PETSC_EXTERN PetscErrorCode PetscDTGaussLobattoJacobiQuadrature(PetscInt,PetscReal,PetscReal,PetscReal,PetscReal,PetscReal*,PetscReal*);
78916e780bShannah_mairs PETSC_EXTERN PetscErrorCode PetscDTGaussLobattoLegendreQuadrature(PetscInt,PetscGaussLobattoLegendreCreateType,PetscReal*,PetscReal*);
79194825f6SJed Brown PETSC_EXTERN PetscErrorCode PetscDTReconstructPoly(PetscInt,PetscInt,const PetscReal*,PetscInt,const PetscReal*,PetscReal*);
80a6b92713SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscDTGaussTensorQuadrature(PetscInt,PetscInt,PetscInt,PetscReal,PetscReal,PetscQuadrature*);
81e6a796c3SToby Isaac PETSC_EXTERN PetscErrorCode PetscDTStroudConicalQuadrature(PetscInt,PetscInt,PetscInt,PetscReal,PetscReal,PetscQuadrature*);
8237045ce4SJed Brown 
83b3c0f97bSTom Klotz PETSC_EXTERN PetscErrorCode PetscDTTanhSinhTensorQuadrature(PetscInt, PetscInt, PetscReal, PetscReal, PetscQuadrature *);
84d6685f55SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscDTTanhSinhIntegrate(void (*)(const PetscReal[], void *, PetscReal *), PetscReal, PetscReal, PetscInt, void *, PetscReal *);
85d6685f55SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscDTTanhSinhIntegrateMPFR(void (*)(const PetscReal[], void *, PetscReal *), PetscReal, PetscReal, PetscInt, void *, PetscReal *);
86b3c0f97bSTom Klotz 
87916e780bShannah_mairs PETSC_EXTERN PetscErrorCode PetscGaussLobattoLegendreIntegrate(PetscInt, PetscReal *, PetscReal *, const PetscReal *, PetscReal *);
88916e780bShannah_mairs PETSC_EXTERN PetscErrorCode PetscGaussLobattoLegendreElementLaplacianCreate(PetscInt, PetscReal *, PetscReal *, PetscReal ***);
89916e780bShannah_mairs PETSC_EXTERN PetscErrorCode PetscGaussLobattoLegendreElementLaplacianDestroy(PetscInt, PetscReal *, PetscReal *, PetscReal ***);
90916e780bShannah_mairs PETSC_EXTERN PetscErrorCode PetscGaussLobattoLegendreElementGradientCreate(PetscInt, PetscReal *, PetscReal *, PetscReal ***, PetscReal ***);
91916e780bShannah_mairs PETSC_EXTERN PetscErrorCode PetscGaussLobattoLegendreElementGradientDestroy(PetscInt, PetscReal *, PetscReal *, PetscReal ***, PetscReal ***);
92916e780bShannah_mairs PETSC_EXTERN PetscErrorCode PetscGaussLobattoLegendreElementAdvectionCreate(PetscInt, PetscReal *, PetscReal *, PetscReal ***);
93916e780bShannah_mairs PETSC_EXTERN PetscErrorCode PetscGaussLobattoLegendreElementAdvectionDestroy(PetscInt, PetscReal *, PetscReal *, PetscReal ***);
94916e780bShannah_mairs PETSC_EXTERN PetscErrorCode PetscGaussLobattoLegendreElementMassCreate(PetscInt, PetscReal *, PetscReal *, PetscReal ***);
95916e780bShannah_mairs PETSC_EXTERN PetscErrorCode PetscGaussLobattoLegendreElementMassDestroy(PetscInt, PetscReal *, PetscReal *, PetscReal ***);
96916e780bShannah_mairs 
971a989b97SToby Isaac PETSC_EXTERN PetscErrorCode PetscDTAltVApply(PetscInt, PetscInt, const PetscReal *, const PetscReal *, PetscReal *);
981a989b97SToby Isaac PETSC_EXTERN PetscErrorCode PetscDTAltVWedge(PetscInt, PetscInt, PetscInt, const PetscReal *, const PetscReal *, PetscReal *);
991a989b97SToby Isaac PETSC_EXTERN PetscErrorCode PetscDTAltVWedgeMatrix(PetscInt, PetscInt, PetscInt, const PetscReal *, PetscReal *);
1001a989b97SToby Isaac PETSC_EXTERN PetscErrorCode PetscDTAltVPullback(PetscInt, PetscInt, const PetscReal *, PetscInt, const PetscReal *, PetscReal *);
1011a989b97SToby Isaac PETSC_EXTERN PetscErrorCode PetscDTAltVPullbackMatrix(PetscInt, PetscInt, const PetscReal *, PetscInt, PetscReal *);
1021a989b97SToby Isaac PETSC_EXTERN PetscErrorCode PetscDTAltVInterior(PetscInt, PetscInt, const PetscReal *, const PetscReal *, PetscReal *);
1031a989b97SToby Isaac PETSC_EXTERN PetscErrorCode PetscDTAltVInteriorMatrix(PetscInt, PetscInt, const PetscReal *, PetscReal *);
104dda711d0SToby Isaac PETSC_EXTERN PetscErrorCode PetscDTAltVInteriorPattern(PetscInt, PetscInt, PetscInt (*)[3]);
1051a989b97SToby Isaac PETSC_EXTERN PetscErrorCode PetscDTAltVStar(PetscInt, PetscInt, PetscInt, const PetscReal *, PetscReal *);
1061a989b97SToby Isaac 
107d4afb720SToby Isaac PETSC_EXTERN PetscErrorCode PetscDTBaryToIndex(PetscInt,PetscInt,const PetscInt[],PetscInt*);
108d4afb720SToby Isaac PETSC_EXTERN PetscErrorCode PetscDTIndexToBary(PetscInt,PetscInt,PetscInt,PetscInt[]);
109fbdc3dfeSToby Isaac PETSC_EXTERN PetscErrorCode PetscDTGradedOrderToIndex(PetscInt,const PetscInt[],PetscInt*);
110fbdc3dfeSToby Isaac PETSC_EXTERN PetscErrorCode PetscDTIndexToGradedOrder(PetscInt,PetscInt,PetscInt[]);
111d4afb720SToby Isaac 
112fad4db65SToby Isaac #if defined(PETSC_USE_64BIT_INDICES)
113fad4db65SToby Isaac #define PETSC_FACTORIAL_MAX 20
114fad4db65SToby Isaac #define PETSC_BINOMIAL_MAX  61
115fad4db65SToby Isaac #else
116fad4db65SToby Isaac #define PETSC_FACTORIAL_MAX 12
117fad4db65SToby Isaac #define PETSC_BINOMIAL_MAX  29
118fad4db65SToby Isaac #endif
119fad4db65SToby Isaac 
120fad4db65SToby Isaac /*MC
121fad4db65SToby Isaac    PetscDTFactorial - Approximate n! as a real number
122fad4db65SToby Isaac 
1234165533cSJose E. Roman    Input Parameter:
124fad4db65SToby Isaac .  n - a non-negative integer
125fad4db65SToby Isaac 
1264165533cSJose E. Roman    Output Parameter:
127fad4db65SToby Isaac .  factorial - n!
128fad4db65SToby Isaac 
129fad4db65SToby Isaac    Level: beginner
130fad4db65SToby Isaac M*/
1319fbee547SJacob Faibussowitsch static inline PetscErrorCode PetscDTFactorial(PetscInt n, PetscReal *factorial)
132fad4db65SToby Isaac {
133fad4db65SToby Isaac   PetscReal f = 1.0;
134fad4db65SToby Isaac 
135fad4db65SToby Isaac   PetscFunctionBegin;
136e2ab39ccSLisandro Dalcin   *factorial = -1.0;
1372c71b3e2SJacob Faibussowitsch   PetscCheck(n >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Factorial called with negative number %D", n);
1385f80ce2aSJacob Faibussowitsch   for (PetscInt i = 1; i < n+1; ++i) f *= (PetscReal)i;
139fad4db65SToby Isaac   *factorial = f;
140fad4db65SToby Isaac   PetscFunctionReturn(0);
141fad4db65SToby Isaac }
142fad4db65SToby Isaac 
143fad4db65SToby Isaac /*MC
144fad4db65SToby Isaac    PetscDTFactorialInt - Compute n! as an integer
145fad4db65SToby Isaac 
1464165533cSJose E. Roman    Input Parameter:
147fad4db65SToby Isaac .  n - a non-negative integer
148fad4db65SToby Isaac 
1494165533cSJose E. Roman    Output Parameter:
150fad4db65SToby Isaac .  factorial - n!
151fad4db65SToby Isaac 
152fad4db65SToby Isaac    Level: beginner
153fad4db65SToby Isaac 
154fad4db65SToby Isaac    Note: this is limited to n such that n! can be represented by PetscInt, which is 12 if PetscInt is a signed 32-bit integer and 20 if PetscInt is a signed 64-bit integer.
155fad4db65SToby Isaac M*/
1569fbee547SJacob Faibussowitsch static inline PetscErrorCode PetscDTFactorialInt(PetscInt n, PetscInt *factorial)
157fad4db65SToby Isaac {
158fad4db65SToby Isaac   PetscInt facLookup[13] = {1, 1, 2, 6, 24, 120, 720, 5040, 40320, 362880, 3628800, 39916800, 479001600};
159fad4db65SToby Isaac 
16028222859SToby Isaac   PetscFunctionBegin;
16128222859SToby Isaac   *factorial = -1;
1622c71b3e2SJacob Faibussowitsch   PetscCheck(n >= 0 && n <= PETSC_FACTORIAL_MAX,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Number of elements %D is not in supported range [0,%D]",n,PETSC_FACTORIAL_MAX);
163fad4db65SToby Isaac   if (n <= 12) {
164fad4db65SToby Isaac     *factorial = facLookup[n];
165fad4db65SToby Isaac   } else {
166fad4db65SToby Isaac     PetscInt f = facLookup[12];
167fad4db65SToby Isaac     PetscInt i;
168fad4db65SToby Isaac 
169fad4db65SToby Isaac     for (i = 13; i < n+1; ++i) f *= i;
170fad4db65SToby Isaac     *factorial = f;
171fad4db65SToby Isaac   }
172fad4db65SToby Isaac   PetscFunctionReturn(0);
173fad4db65SToby Isaac }
174fad4db65SToby Isaac 
175fad4db65SToby Isaac /*MC
176fad4db65SToby Isaac    PetscDTBinomial - Approximate the binomial coefficient "n choose k"
177fad4db65SToby Isaac 
1784165533cSJose E. Roman    Input Parameters:
179fad4db65SToby Isaac +  n - a non-negative integer
180fad4db65SToby Isaac -  k - an integer between 0 and n, inclusive
181fad4db65SToby Isaac 
1824165533cSJose E. Roman    Output Parameter:
183fad4db65SToby Isaac .  binomial - approximation of the binomial coefficient n choose k
184fad4db65SToby Isaac 
185fad4db65SToby Isaac    Level: beginner
186fad4db65SToby Isaac M*/
1879fbee547SJacob Faibussowitsch static inline PetscErrorCode PetscDTBinomial(PetscInt n, PetscInt k, PetscReal *binomial)
1881a989b97SToby Isaac {
1891a989b97SToby Isaac   PetscFunctionBeginHot;
190e2ab39ccSLisandro Dalcin   *binomial = -1.0;
1912c71b3e2SJacob Faibussowitsch   PetscCheck(n >= 0 && k >= 0 && k <= n,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Binomial arguments (%D %D) must be non-negative, k <= n", n, k);
1921a989b97SToby Isaac   if (n <= 3) {
1931a989b97SToby Isaac     PetscInt binomLookup[4][4] = {{1, 0, 0, 0}, {1, 1, 0, 0}, {1, 2, 1, 0}, {1, 3, 3, 1}};
1941a989b97SToby Isaac 
195e2ab39ccSLisandro Dalcin     *binomial = (PetscReal)binomLookup[n][k];
1961a989b97SToby Isaac   } else {
197e2ab39ccSLisandro Dalcin     PetscReal binom = 1.0;
1981a989b97SToby Isaac 
1991a989b97SToby Isaac     k = PetscMin(k, n - k);
2005f80ce2aSJacob Faibussowitsch     for (PetscInt i = 0; i < k; i++) binom = (binom * (PetscReal)(n - i)) / (PetscReal)(i + 1);
2011a989b97SToby Isaac     *binomial = binom;
2021a989b97SToby Isaac   }
2031a989b97SToby Isaac   PetscFunctionReturn(0);
2041a989b97SToby Isaac }
2051a989b97SToby Isaac 
206fad4db65SToby Isaac /*MC
207fad4db65SToby Isaac    PetscDTBinomialInt - Compute the binomial coefficient "n choose k"
208fad4db65SToby Isaac 
20997bb3fdcSJose E. Roman    Input Parameters:
210fad4db65SToby Isaac +  n - a non-negative integer
211fad4db65SToby Isaac -  k - an integer between 0 and n, inclusive
212fad4db65SToby Isaac 
21397bb3fdcSJose E. Roman    Output Parameter:
214fad4db65SToby Isaac .  binomial - the binomial coefficient n choose k
215fad4db65SToby Isaac 
216fad4db65SToby Isaac    Note: this is limited by integers that can be represented by PetscInt
217fad4db65SToby Isaac 
218fad4db65SToby Isaac    Level: beginner
219fad4db65SToby Isaac M*/
2209fbee547SJacob Faibussowitsch static inline PetscErrorCode PetscDTBinomialInt(PetscInt n, PetscInt k, PetscInt *binomial)
221fad4db65SToby Isaac {
22228222859SToby Isaac   PetscInt bin;
22328222859SToby Isaac 
22428222859SToby Isaac   PetscFunctionBegin;
22528222859SToby Isaac   *binomial = -1;
2262c71b3e2SJacob Faibussowitsch   PetscCheck(n >= 0 && k >= 0 && k <= n,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Binomial arguments (%D %D) must be non-negative, k <= n", n, k);
2272c71b3e2SJacob Faibussowitsch   PetscCheck(n <= PETSC_BINOMIAL_MAX,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Binomial elements %D is larger than max for PetscInt, %D", n, PETSC_BINOMIAL_MAX);
228fad4db65SToby Isaac   if (n <= 3) {
229fad4db65SToby Isaac     PetscInt binomLookup[4][4] = {{1, 0, 0, 0}, {1, 1, 0, 0}, {1, 2, 1, 0}, {1, 3, 3, 1}};
230fad4db65SToby Isaac 
23128222859SToby Isaac     bin = binomLookup[n][k];
232fad4db65SToby Isaac   } else {
233fad4db65SToby Isaac     PetscInt binom = 1;
234fad4db65SToby Isaac 
235fad4db65SToby Isaac     k = PetscMin(k, n - k);
2365f80ce2aSJacob Faibussowitsch     for (PetscInt i = 0; i < k; i++) binom = (binom * (n - i)) / (i + 1);
23728222859SToby Isaac     bin = binom;
238fad4db65SToby Isaac   }
23928222859SToby Isaac   *binomial = bin;
240fad4db65SToby Isaac   PetscFunctionReturn(0);
241fad4db65SToby Isaac }
242fad4db65SToby Isaac 
243fad4db65SToby Isaac /*MC
244fad4db65SToby Isaac    PetscDTEnumPerm - Get a permutation of n integers from its encoding into the integers [0, n!) as a sequence of swaps.
245fad4db65SToby Isaac 
246fad4db65SToby Isaac    A permutation can be described by the operations that convert the lists [0, 1, ..., n-1] into the permutation,
247fad4db65SToby Isaac    by a sequence of swaps, where the ith step swaps whatever number is in ith position with a number that is in
24828222859SToby Isaac    some position j >= i.  This swap is encoded as the difference (j - i).  The difference d_i at step i is less than
24928222859SToby Isaac    (n - i).  This sequence of n-1 differences [d_0, ..., d_{n-2}] is encoded as the number
250fad4db65SToby Isaac    (n-1)! * d_0 + (n-2)! * d_1 + ... + 1! * d_{n-2}.
251fad4db65SToby Isaac 
2524165533cSJose E. Roman    Input Parameters:
253fad4db65SToby Isaac +  n - a non-negative integer (see note about limits below)
2548cd1e013SToby Isaac -  k - an integer in [0, n!)
255fad4db65SToby Isaac 
2564165533cSJose E. Roman    Output Parameters:
257fad4db65SToby Isaac +  perm - the permuted list of the integers [0, ..., n-1]
2588cd1e013SToby Isaac -  isOdd - if not NULL, returns wether the permutation used an even or odd number of swaps.
259fad4db65SToby Isaac 
260fad4db65SToby Isaac    Note: this is limited to n such that n! can be represented by PetscInt, which is 12 if PetscInt is a signed 32-bit integer and 20 if PetscInt is a signed 64-bit integer.
261fad4db65SToby Isaac 
262fad4db65SToby Isaac    Level: beginner
263fad4db65SToby Isaac M*/
2649fbee547SJacob Faibussowitsch static inline PetscErrorCode PetscDTEnumPerm(PetscInt n, PetscInt k, PetscInt *perm, PetscBool *isOdd)
2651a989b97SToby Isaac {
2661a989b97SToby Isaac   PetscInt  odd = 0;
2671a989b97SToby Isaac   PetscInt  i;
268fad4db65SToby Isaac   PetscInt  work[PETSC_FACTORIAL_MAX];
269fad4db65SToby Isaac   PetscInt *w;
2701a989b97SToby Isaac 
27128222859SToby Isaac   PetscFunctionBegin;
27228222859SToby Isaac   if (isOdd) *isOdd = PETSC_FALSE;
2732c71b3e2SJacob Faibussowitsch   PetscCheck(n >= 0 && n <= PETSC_FACTORIAL_MAX,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Number of elements %D is not in supported range [0,%D]",n,PETSC_FACTORIAL_MAX);
274fad4db65SToby Isaac   w = &work[n - 2];
2751a989b97SToby Isaac   for (i = 2; i <= n; i++) {
2761a989b97SToby Isaac     *(w--) = k % i;
2771a989b97SToby Isaac     k /= i;
2781a989b97SToby Isaac   }
2791a989b97SToby Isaac   for (i = 0; i < n; i++) perm[i] = i;
2801a989b97SToby Isaac   for (i = 0; i < n - 1; i++) {
2811a989b97SToby Isaac     PetscInt s = work[i];
2821a989b97SToby Isaac     PetscInt swap = perm[i];
2831a989b97SToby Isaac 
2841a989b97SToby Isaac     perm[i] = perm[i + s];
2851a989b97SToby Isaac     perm[i + s] = swap;
2861a989b97SToby Isaac     odd ^= (!!s);
2871a989b97SToby Isaac   }
2881a989b97SToby Isaac   if (isOdd) *isOdd = odd ? PETSC_TRUE : PETSC_FALSE;
2891a989b97SToby Isaac   PetscFunctionReturn(0);
2901a989b97SToby Isaac }
2911a989b97SToby Isaac 
292fad4db65SToby Isaac /*MC
2938cd1e013SToby Isaac    PetscDTPermIndex - Encode a permutation of n into an integer in [0, n!).  This inverts PetscDTEnumPerm.
2948cd1e013SToby Isaac 
2954165533cSJose E. Roman    Input Parameters:
2968cd1e013SToby Isaac +  n - a non-negative integer (see note about limits below)
2978cd1e013SToby Isaac -  perm - the permuted list of the integers [0, ..., n-1]
2988cd1e013SToby Isaac 
2994165533cSJose E. Roman    Output Parameters:
3008cd1e013SToby Isaac +  k - an integer in [0, n!)
301f0fc11ceSJed Brown -  isOdd - if not NULL, returns wether the permutation used an even or odd number of swaps.
3028cd1e013SToby Isaac 
3038cd1e013SToby Isaac    Note: this is limited to n such that n! can be represented by PetscInt, which is 12 if PetscInt is a signed 32-bit integer and 20 if PetscInt is a signed 64-bit integer.
3048cd1e013SToby Isaac 
3058cd1e013SToby Isaac    Level: beginner
3068cd1e013SToby Isaac M*/
3079fbee547SJacob Faibussowitsch static inline PetscErrorCode PetscDTPermIndex(PetscInt n, const PetscInt *perm, PetscInt *k, PetscBool *isOdd)
3088cd1e013SToby Isaac {
3098cd1e013SToby Isaac   PetscInt  odd = 0;
3108cd1e013SToby Isaac   PetscInt  i, idx;
3118cd1e013SToby Isaac   PetscInt  work[PETSC_FACTORIAL_MAX];
3128cd1e013SToby Isaac   PetscInt  iwork[PETSC_FACTORIAL_MAX];
3138cd1e013SToby Isaac 
3148cd1e013SToby Isaac   PetscFunctionBeginHot;
31528222859SToby Isaac   *k = -1;
31628222859SToby Isaac   if (isOdd) *isOdd = PETSC_FALSE;
3172c71b3e2SJacob Faibussowitsch   PetscCheck(n >= 0 && n <= PETSC_FACTORIAL_MAX,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Number of elements %D is not in supported range [0,%D]",n,PETSC_FACTORIAL_MAX);
3188cd1e013SToby Isaac   for (i = 0; i < n; i++) work[i] = i;  /* partial permutation */
3198cd1e013SToby Isaac   for (i = 0; i < n; i++) iwork[i] = i; /* partial permutation inverse */
3208cd1e013SToby Isaac   for (idx = 0, i = 0; i < n - 1; i++) {
3218cd1e013SToby Isaac     PetscInt j = perm[i];
3228cd1e013SToby Isaac     PetscInt icur = work[i];
3238cd1e013SToby Isaac     PetscInt jloc = iwork[j];
3248cd1e013SToby Isaac     PetscInt diff = jloc - i;
3258cd1e013SToby Isaac 
3268cd1e013SToby Isaac     idx = idx * (n - i) + diff;
3278cd1e013SToby Isaac     /* swap (i, jloc) */
3288cd1e013SToby Isaac     work[i] = j;
3298cd1e013SToby Isaac     work[jloc] = icur;
3308cd1e013SToby Isaac     iwork[j] = i;
3318cd1e013SToby Isaac     iwork[icur] = jloc;
3328cd1e013SToby Isaac     odd ^= (!!diff);
3338cd1e013SToby Isaac   }
3348cd1e013SToby Isaac   *k = idx;
3358cd1e013SToby Isaac   if (isOdd) *isOdd = odd ? PETSC_TRUE : PETSC_FALSE;
3368cd1e013SToby Isaac   PetscFunctionReturn(0);
3378cd1e013SToby Isaac }
3388cd1e013SToby Isaac 
3398cd1e013SToby Isaac /*MC
340fad4db65SToby Isaac    PetscDTEnumSubset - Get an ordered subset of the integers [0, ..., n - 1] from its encoding as an integers in [0, n choose k).
341fad4db65SToby Isaac    The encoding is in lexicographic order.
342fad4db65SToby Isaac 
3434165533cSJose E. Roman    Input Parameters:
344fad4db65SToby Isaac +  n - a non-negative integer (see note about limits below)
345fad4db65SToby Isaac .  k - an integer in [0, n]
346fad4db65SToby Isaac -  j - an index in [0, n choose k)
347fad4db65SToby Isaac 
3484165533cSJose E. Roman    Output Parameter:
349fad4db65SToby Isaac .  subset - the jth subset of size k of the integers [0, ..., n - 1]
350fad4db65SToby Isaac 
351fad4db65SToby Isaac    Note: this is limited by arguments such that n choose k can be represented by PetscInt
352fad4db65SToby Isaac 
353fad4db65SToby Isaac    Level: beginner
354fad4db65SToby Isaac 
355fad4db65SToby Isaac .seealso: PetscDTSubsetIndex()
356fad4db65SToby Isaac M*/
3579fbee547SJacob Faibussowitsch static inline PetscErrorCode PetscDTEnumSubset(PetscInt n, PetscInt k, PetscInt j, PetscInt *subset)
3581a989b97SToby Isaac {
3595f80ce2aSJacob Faibussowitsch   PetscInt Nk;
3601a989b97SToby Isaac 
3611a989b97SToby Isaac   PetscFunctionBeginHot;
3629566063dSJacob Faibussowitsch   PetscCall(PetscDTBinomialInt(n, k, &Nk));
3635f80ce2aSJacob Faibussowitsch   for (PetscInt i = 0, l = 0; i < n && l < k; i++) {
3641a989b97SToby Isaac     PetscInt Nminuskminus = (Nk * (k - l)) / (n - i);
3651a989b97SToby Isaac     PetscInt Nminusk = Nk - Nminuskminus;
3661a989b97SToby Isaac 
3671a989b97SToby Isaac     if (j < Nminuskminus) {
3681a989b97SToby Isaac       subset[l++] = i;
3691a989b97SToby Isaac       Nk = Nminuskminus;
3701a989b97SToby Isaac     } else {
3711a989b97SToby Isaac       j -= Nminuskminus;
3721a989b97SToby Isaac       Nk = Nminusk;
3731a989b97SToby Isaac     }
3741a989b97SToby Isaac   }
3751a989b97SToby Isaac   PetscFunctionReturn(0);
3761a989b97SToby Isaac }
3771a989b97SToby Isaac 
378fad4db65SToby Isaac /*MC
379fad4db65SToby Isaac    PetscDTSubsetIndex - Convert an ordered subset of k integers from the set [0, ..., n - 1] to its encoding as an integers in [0, n choose k) in lexicographic order.  This is the inverse of PetscDTEnumSubset.
380fad4db65SToby Isaac 
3814165533cSJose E. Roman    Input Parameters:
382fad4db65SToby Isaac +  n - a non-negative integer (see note about limits below)
383fad4db65SToby Isaac .  k - an integer in [0, n]
384fad4db65SToby Isaac -  subset - an ordered subset of the integers [0, ..., n - 1]
385fad4db65SToby Isaac 
3864165533cSJose E. Roman    Output Parameter:
387fad4db65SToby Isaac .  index - the rank of the subset in lexicographic order
388fad4db65SToby Isaac 
389fad4db65SToby Isaac    Note: this is limited by arguments such that n choose k can be represented by PetscInt
390fad4db65SToby Isaac 
391fad4db65SToby Isaac    Level: beginner
392fad4db65SToby Isaac 
393fad4db65SToby Isaac .seealso: PetscDTEnumSubset()
394fad4db65SToby Isaac M*/
3959fbee547SJacob Faibussowitsch static inline PetscErrorCode PetscDTSubsetIndex(PetscInt n, PetscInt k, const PetscInt *subset, PetscInt *index)
3961a989b97SToby Isaac {
3975f80ce2aSJacob Faibussowitsch   PetscInt j = 0, Nk;
3981a989b97SToby Isaac 
39928222859SToby Isaac   PetscFunctionBegin;
40028222859SToby Isaac   *index = -1;
4019566063dSJacob Faibussowitsch   PetscCall(PetscDTBinomialInt(n, k, &Nk));
4025f80ce2aSJacob Faibussowitsch   for (PetscInt i = 0, l = 0; i < n && l < k; i++) {
4031a989b97SToby Isaac     PetscInt Nminuskminus = (Nk * (k - l)) / (n - i);
4041a989b97SToby Isaac     PetscInt Nminusk = Nk - Nminuskminus;
4051a989b97SToby Isaac 
4061a989b97SToby Isaac     if (subset[l] == i) {
4071a989b97SToby Isaac       l++;
4081a989b97SToby Isaac       Nk = Nminuskminus;
4091a989b97SToby Isaac     } else {
4101a989b97SToby Isaac       j += Nminuskminus;
4111a989b97SToby Isaac       Nk = Nminusk;
4121a989b97SToby Isaac     }
4131a989b97SToby Isaac   }
4141a989b97SToby Isaac   *index = j;
4151a989b97SToby Isaac   PetscFunctionReturn(0);
4161a989b97SToby Isaac }
4171a989b97SToby Isaac 
418fad4db65SToby Isaac /*MC
41928222859SToby Isaac    PetscDTEnumSubset - Split the integers [0, ..., n - 1] into two complementary ordered subsets, the first subset of size k and being the jth subset of that size in lexicographic order.
420fad4db65SToby Isaac 
4214165533cSJose E. Roman    Input Parameters:
422fad4db65SToby Isaac +  n - a non-negative integer (see note about limits below)
423fad4db65SToby Isaac .  k - an integer in [0, n]
424fad4db65SToby Isaac -  j - an index in [0, n choose k)
425fad4db65SToby Isaac 
4264165533cSJose E. Roman    Output Parameters:
427fad4db65SToby Isaac +  perm - the jth subset of size k of the integers [0, ..., n - 1], followed by its complementary set.
42828222859SToby Isaac -  isOdd - if not NULL, return whether perm is an even or odd permutation.
429fad4db65SToby Isaac 
430fad4db65SToby Isaac    Note: this is limited by arguments such that n choose k can be represented by PetscInt
431fad4db65SToby Isaac 
432fad4db65SToby Isaac    Level: beginner
433fad4db65SToby Isaac 
434fad4db65SToby Isaac .seealso: PetscDTEnumSubset(), PetscDTSubsetIndex()
435fad4db65SToby Isaac M*/
4369fbee547SJacob Faibussowitsch static inline PetscErrorCode PetscDTEnumSplit(PetscInt n, PetscInt k, PetscInt j, PetscInt *perm, PetscBool *isOdd)
4371a989b97SToby Isaac {
4385f80ce2aSJacob Faibussowitsch   PetscInt i, l, m, Nk, odd = 0;
4395f80ce2aSJacob Faibussowitsch   PetscInt *subcomp = perm+k;
4401a989b97SToby Isaac 
44128222859SToby Isaac   PetscFunctionBegin;
44228222859SToby Isaac   if (isOdd) *isOdd = PETSC_FALSE;
4439566063dSJacob Faibussowitsch   PetscCall(PetscDTBinomialInt(n, k, &Nk));
4441a989b97SToby Isaac   for (i = 0, l = 0, m = 0; i < n && l < k; i++) {
4451a989b97SToby Isaac     PetscInt Nminuskminus = (Nk * (k - l)) / (n - i);
4461a989b97SToby Isaac     PetscInt Nminusk = Nk - Nminuskminus;
4471a989b97SToby Isaac 
4481a989b97SToby Isaac     if (j < Nminuskminus) {
449fad4db65SToby Isaac       perm[l++] = i;
4501a989b97SToby Isaac       Nk = Nminuskminus;
4511a989b97SToby Isaac     } else {
4521a989b97SToby Isaac       subcomp[m++] = i;
4531a989b97SToby Isaac       j -= Nminuskminus;
4541a989b97SToby Isaac       odd ^= ((k - l) & 1);
4551a989b97SToby Isaac       Nk = Nminusk;
4561a989b97SToby Isaac     }
4571a989b97SToby Isaac   }
4585f80ce2aSJacob Faibussowitsch   for (; i < n; i++) subcomp[m++] = i;
4591a989b97SToby Isaac   if (isOdd) *isOdd = odd ? PETSC_TRUE : PETSC_FALSE;
4601a989b97SToby Isaac   PetscFunctionReturn(0);
4611a989b97SToby Isaac }
4621a989b97SToby Isaac 
463ef0bb6c7SMatthew G. Knepley struct _p_PetscTabulation {
464a5b23f4aSJose E. Roman   PetscInt    K;    /* Indicates a k-jet, namely tabulated derivatives up to order k */
46519815104SMartin Diehl   PetscInt    Nr;   /* The number of tabulation replicas (often 1) */
466ef0bb6c7SMatthew G. Knepley   PetscInt    Np;   /* The number of tabulation points in a replica */
467ef0bb6c7SMatthew G. Knepley   PetscInt    Nb;   /* The number of functions tabulated */
468ef0bb6c7SMatthew G. Knepley   PetscInt    Nc;   /* The number of function components */
469ef0bb6c7SMatthew G. Knepley   PetscInt    cdim; /* The coordinate dimension */
470ef0bb6c7SMatthew G. Knepley   PetscReal **T;    /* The tabulation T[K] of functions and their derivatives
471ef0bb6c7SMatthew G. Knepley                        T[0] = B[Nr*Np][Nb][Nc]:             The basis function values at quadrature points
472ef0bb6c7SMatthew G. Knepley                        T[1] = D[Nr*Np][Nb][Nc][cdim]:       The basis function derivatives at quadrature points
473ef0bb6c7SMatthew G. Knepley                        T[2] = H[Nr*Np][Nb][Nc][cdim][cdim]: The basis function second derivatives at quadrature points */
474ef0bb6c7SMatthew G. Knepley };
475ef0bb6c7SMatthew G. Knepley typedef struct _p_PetscTabulation *PetscTabulation;
476ef0bb6c7SMatthew G. Knepley 
477d6685f55SMatthew G. Knepley typedef PetscErrorCode (*PetscProbFunc)(const PetscReal[], const PetscReal[], PetscReal[]);
478d6685f55SMatthew G. Knepley 
479d6685f55SMatthew G. Knepley typedef enum {DTPROB_DENSITY_CONSTANT, DTPROB_DENSITY_GAUSSIAN, DTPROB_DENSITY_MAXWELL_BOLTZMANN, DTPROB_NUM_DENSITY} DTProbDensityType;
480d6685f55SMatthew G. Knepley PETSC_EXTERN const char * const DTProbDensityTypes[];
481d6685f55SMatthew G. Knepley 
482d6685f55SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPDFMaxwellBoltzmann1D(const PetscReal[], const PetscReal[], PetscReal[]);
483d6685f55SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscCDFMaxwellBoltzmann1D(const PetscReal[], const PetscReal[], PetscReal[]);
484d6685f55SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPDFMaxwellBoltzmann2D(const PetscReal[], const PetscReal[], PetscReal[]);
485d6685f55SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscCDFMaxwellBoltzmann2D(const PetscReal[], const PetscReal[], PetscReal[]);
486d6685f55SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPDFMaxwellBoltzmann3D(const PetscReal[], const PetscReal[], PetscReal[]);
487d6685f55SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscCDFMaxwellBoltzmann3D(const PetscReal[], const PetscReal[], PetscReal[]);
488d6685f55SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPDFGaussian1D(const PetscReal[], const PetscReal[], PetscReal[]);
489d6685f55SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscCDFGaussian1D(const PetscReal[], const PetscReal[], PetscReal[]);
490d6685f55SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPDFSampleGaussian1D(const PetscReal[], const PetscReal[], PetscReal[]);
491d6685f55SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPDFGaussian2D(const PetscReal[], const PetscReal[], PetscReal[]);
492d6685f55SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPDFSampleGaussian2D(const PetscReal[], const PetscReal[], PetscReal[]);
493*ea1b28ebSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPDFGaussian3D(const PetscReal[], const PetscReal[], PetscReal[]);
494*ea1b28ebSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPDFSampleGaussian3D(const PetscReal[], const PetscReal[], PetscReal[]);
495d6685f55SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPDFConstant1D(const PetscReal[], const PetscReal[], PetscReal[]);
496d6685f55SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscCDFConstant1D(const PetscReal[], const PetscReal[], PetscReal[]);
497d6685f55SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPDFSampleConstant1D(const PetscReal[], const PetscReal[], PetscReal[]);
498*ea1b28ebSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPDFConstant2D(const PetscReal[], const PetscReal[], PetscReal[]);
499*ea1b28ebSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscCDFConstant2D(const PetscReal[], const PetscReal[], PetscReal[]);
500*ea1b28ebSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPDFSampleConstant2D(const PetscReal[], const PetscReal[], PetscReal[]);
501*ea1b28ebSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPDFConstant3D(const PetscReal[], const PetscReal[], PetscReal[]);
502*ea1b28ebSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscCDFConstant3D(const PetscReal[], const PetscReal[], PetscReal[]);
503*ea1b28ebSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPDFSampleConstant3D(const PetscReal[], const PetscReal[], PetscReal[]);
504d6685f55SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscProbCreateFromOptions(PetscInt, const char[], const char[], PetscProbFunc *, PetscProbFunc *, PetscProbFunc *);
505d6685f55SMatthew G. Knepley 
506d6685f55SMatthew G. Knepley #include <petscvec.h>
507d6685f55SMatthew G. Knepley 
508d6685f55SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscProbComputeKSStatistic(Vec, PetscProbFunc, PetscReal *);
509d6685f55SMatthew G. Knepley 
51037045ce4SJed Brown #endif
511