xref: /petsc/include/petscmat.h (revision 013e2dc7137d1d9dc4e6b44a828a8fb0f1bd6f29)
12eac72dbSBarry Smith /*
22eac72dbSBarry Smith      Include file for the matrix component of PETSc
32eac72dbSBarry Smith */
426bd1501SBarry Smith #ifndef PETSCMAT_H
526bd1501SBarry Smith #define PETSCMAT_H
6ac09b921SBarry Smith 
72c8e378dSBarry Smith #include <petscvec.h>
82eac72dbSBarry Smith 
9ac09b921SBarry Smith /* SUBMANSEC = Mat */
10ac09b921SBarry Smith 
11d9274352SBarry Smith /*S
128f6c3df8SBarry Smith      Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without
138f6c3df8SBarry Smith            an explicit sparse representation (such as matrix-free operators)
142eac72dbSBarry Smith 
15d91e6319SBarry Smith    Level: beginner
16d91e6319SBarry Smith 
17db781477SPatrick Sanan .seealso: `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()`
18d9274352SBarry Smith S*/
19d9274352SBarry Smith typedef struct _p_Mat *Mat;
20d9274352SBarry Smith 
2176bdecfbSBarry Smith /*J
228f6c3df8SBarry Smith     MatType - String with the name of a PETSc matrix type
23d9274352SBarry Smith 
24d9274352SBarry Smith    Level: beginner
25d9274352SBarry Smith 
26db781477SPatrick Sanan .seealso: `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()`
2776bdecfbSBarry Smith J*/
2819fd82e9SBarry Smith typedef const char *MatType;
29273d9f13SBarry Smith #define MATSAME                      "same"
305a11e1b2SBarry Smith #define MATMAIJ                      "maij"
31273d9f13SBarry Smith #define MATSEQMAIJ                   "seqmaij"
32273d9f13SBarry Smith #define MATMPIMAIJ                   "mpimaij"
3349bd79ccSDebojyoti Ghosh #define MATKAIJ                      "kaij"
3449bd79ccSDebojyoti Ghosh #define MATSEQKAIJ                   "seqkaij"
3549bd79ccSDebojyoti Ghosh #define MATMPIKAIJ                   "mpikaij"
36273d9f13SBarry Smith #define MATIS                        "is"
375a11e1b2SBarry Smith #define MATAIJ                       "aij"
38273d9f13SBarry Smith #define MATSEQAIJ                    "seqaij"
39273d9f13SBarry Smith #define MATMPIAIJ                    "mpiaij"
405a11e1b2SBarry Smith #define MATAIJCRL                    "aijcrl"
415a11e1b2SBarry Smith #define MATSEQAIJCRL                 "seqaijcrl"
425a11e1b2SBarry Smith #define MATMPIAIJCRL                 "mpiaijcrl"
439ae82921SPaul Mullowney #define MATAIJCUSPARSE               "aijcusparse"
449ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE            "seqaijcusparse"
459ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE            "mpiaijcusparse"
468c3ff71bSJunchao Zhang #define MATAIJKOKKOS                 "aijkokkos"
478c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS              "seqaijkokkos"
488c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS              "mpiaijkokkos"
49d67ff14aSKarl Rupp #define MATAIJVIENNACL               "aijviennacl"
50d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL            "seqaijviennacl"
51d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL            "mpiaijviennacl"
525a11e1b2SBarry Smith #define MATAIJPERM                   "aijperm"
535a11e1b2SBarry Smith #define MATSEQAIJPERM                "seqaijperm"
545a11e1b2SBarry Smith #define MATMPIAIJPERM                "mpiaijperm"
554dfdc2d9SRichard Tran Mills #define MATAIJSELL                   "aijsell"
564dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL                "seqaijsell"
574dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL                "mpiaijsell"
584a2a386eSRichard Tran Mills #define MATAIJMKL                    "aijmkl"
594a2a386eSRichard Tran Mills #define MATSEQAIJMKL                 "seqaijmkl"
604a2a386eSRichard Tran Mills #define MATMPIAIJMKL                 "mpiaijmkl"
61b5b72c8aSIrina Sokolova #define MATBAIJMKL                   "baijmkl"
62b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL                "seqbaijmkl"
63b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL                "mpibaijmkl"
64273d9f13SBarry Smith #define MATSHELL                     "shell"
65c1fff1c6SRichard Tran Mills #define MATCENTERING                 "centering"
665a11e1b2SBarry Smith #define MATDENSE                     "dense"
67637a0070SStefano Zampini #define MATDENSECUDA                 "densecuda"
68209238afSKris Buschelman #define MATSEQDENSE                  "seqdense"
69bfc799aaSStefano Zampini #define MATSEQDENSECUDA              "seqdensecuda"
70273d9f13SBarry Smith #define MATMPIDENSE                  "mpidense"
71637a0070SStefano Zampini #define MATMPIDENSECUDA              "mpidensecuda"
72db31f6deSJed Brown #define MATELEMENTAL                 "elemental"
73d24d4204SJose E. Roman #define MATSCALAPACK                 "scalapack"
745a11e1b2SBarry Smith #define MATBAIJ                      "baij"
75273d9f13SBarry Smith #define MATSEQBAIJ                   "seqbaij"
76273d9f13SBarry Smith #define MATMPIBAIJ                   "mpibaij"
77273d9f13SBarry Smith #define MATMPIADJ                    "mpiadj"
785a11e1b2SBarry Smith #define MATSBAIJ                     "sbaij"
79273d9f13SBarry Smith #define MATSEQSBAIJ                  "seqsbaij"
80273d9f13SBarry Smith #define MATMPISBAIJ                  "mpisbaij"
81cebc7f6cSBarry Smith #define MATMFFD                      "mffd"
82c8a8475eSBarry Smith #define MATNORMAL                    "normal"
83c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN           "normalh"
84ab92ecdeSBarry Smith #define MATLRC                       "lrc"
852a6744ebSBarry Smith #define MATSCATTER                   "scatter"
86421e10b8SBarry Smith #define MATBLOCKMAT                  "blockmat"
87793850ffSBarry Smith #define MATCOMPOSITE                 "composite"
881f8c7532SHong Zhang #define MATFFT                       "fft"
891f8c7532SHong Zhang #define MATFFTW                      "fftw"
90e133240eSMatthew G Knepley #define MATSEQCUFFT                  "seqcufft"
91*013e2dc7SBarry Smith #define MATTRANSPOSEMAT              PETSC_DEPRECATED_MACRO("GCC warning \"MATTRANSPOSEMAT macro is deprecated use MATTRANSPOSEVIRTUAL (since version 3.18)\"") "transpose"
92*013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL          "transpose"
93*013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose"
9472ca8751SBarry Smith #define MATSCHURCOMPLEMENT           "schurcomplement"
951d6018f0SLisandro Dalcin #define MATPYTHON                    "python"
9663c07aadSStefano Zampini #define MATHYPRE                     "hypre"
97f91d8e95SBarry Smith #define MATHYPRESTRUCT               "hyprestruct"
98a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT              "hypresstruct"
99ee1cef2cSJed Brown #define MATSUBMATRIX                 "submatrix"
1002c0dbf93SJed Brown #define MATLOCALREF                  "localref"
101d8588912SDave May #define MATNEST                      "nest"
102c094ef40SMatthew G. Knepley #define MATPREALLOCATOR              "preallocator"
103d4002b98SHong Zhang #define MATSELL                      "sell"
104d4002b98SHong Zhang #define MATSEQSELL                   "seqsell"
105d4002b98SHong Zhang #define MATMPISELL                   "mpisell"
106a3b2e22bSHong Zhang #define MATDUMMY                     "dummy"
107cd929ea3SAlp Dener #define MATLMVM                      "lmvm"
10878e4361aSAlp Dener #define MATLMVMDFP                   "lmvmdfp"
10978e4361aSAlp Dener #define MATLMVMBFGS                  "lmvmbfgs"
11078e4361aSAlp Dener #define MATLMVMSR1                   "lmvmsr1"
111864588a7SAlp Dener #define MATLMVMBROYDEN               "lmvmbroyden"
112864588a7SAlp Dener #define MATLMVMBADBROYDEN            "lmvmbadbroyden"
113864588a7SAlp Dener #define MATLMVMSYMBROYDEN            "lmvmsymbroyden"
114864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN         "lmvmsymbadbroyden"
115864588a7SAlp Dener #define MATLMVMDIAGBROYDEN           "lmvmdiagbroyden"
1163423f386SBarry Smith #define MATCONSTANTDIAGONAL          "constantdiagonal"
117c7a4214aSPierre Jolivet #define MATHTOOL                     "htool"
11853022affSStefano Zampini #define MATH2OPUS                    "h2opus"
119773941d6SBarry Smith 
12076bdecfbSBarry Smith /*J
1213ca39a21SBarry Smith     MatSolverType - String with the name of a PETSc matrix solver type.
1229989ab13SBarry Smith 
123c2b89b5dSBarry Smith     For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc
1249989ab13SBarry Smith 
1259989ab13SBarry Smith    Level: beginner
1269989ab13SBarry Smith 
1273f498edaSToby Isaac    Notes:  MATSOLVERUMFPACK, MATSOLVERCHOLMOD, MATSOLVERKLU, MATSOLVERSPQR form the SuiteSparse package for which you can use --download-suitesparse
128c7ccbb75SBarry Smith 
129db781477SPatrick Sanan .seealso: `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()`
13076bdecfbSBarry Smith J*/
131ea799195SBarry Smith typedef const char *MatSolverType;
1322692d6eeSBarry Smith #define MATSOLVERSUPERLU         "superlu"
1332692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST    "superlu_dist"
13408f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK       "strumpack"
1352692d6eeSBarry Smith #define MATSOLVERUMFPACK         "umfpack"
13620db9a53SJed Brown #define MATSOLVERCHOLMOD         "cholmod"
137d89f5e7aSBarry Smith #define MATSOLVERKLU             "klu"
138418810c4SBarry Smith #define MATSOLVERSPARSEELEMENTAL "sparseelemental"
139d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL       "elemental"
140d24d4204SJose E. Roman #define MATSOLVERSCALAPACK       "scalapack"
1412692d6eeSBarry Smith #define MATSOLVERESSL            "essl"
1422692d6eeSBarry Smith #define MATSOLVERLUSOL           "lusol"
1432692d6eeSBarry Smith #define MATSOLVERMUMPS           "mumps"
144d615f992SSatish Balay #define MATSOLVERMKL_PARDISO     "mkl_pardiso"
145d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO    "mkl_cpardiso"
1462692d6eeSBarry Smith #define MATSOLVERPASTIX          "pastix"
1472692d6eeSBarry Smith #define MATSOLVERMATLAB          "matlab"
1482692d6eeSBarry Smith #define MATSOLVERPETSC           "petsc"
1492692d6eeSBarry Smith #define MATSOLVERBAS             "bas"
1509ae82921SPaul Mullowney #define MATSOLVERCUSPARSE        "cusparse"
151bddcd29dSMark Adams #define MATSOLVERCUSPARSEBAND    "cusparseband"
152bfc799aaSStefano Zampini #define MATSOLVERCUDA            "cuda"
153930e68a5SMark Adams #define MATSOLVERKOKKOS          "kokkos"
1548f7e8f9dSMark Adams #define MATSOLVERKOKKOSDEVICE    "kokkosdevice"
155a2fc1e05SToby Isaac #define MATSOLVERSPQR            "spqr"
156c0cdd4a1SDahai Guo 
157b24902e0SBarry Smith /*E
158b24902e0SBarry Smith     MatFactorType - indicates what type of factorization is requested
159b24902e0SBarry Smith 
160b24902e0SBarry Smith     Level: beginner
161b24902e0SBarry Smith 
162af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
163b24902e0SBarry Smith 
164db781477SPatrick Sanan .seealso: `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()`
165b24902e0SBarry Smith E*/
1669371c9d4SSatish Balay typedef enum {
1679371c9d4SSatish Balay   MAT_FACTOR_NONE,
1689371c9d4SSatish Balay   MAT_FACTOR_LU,
1699371c9d4SSatish Balay   MAT_FACTOR_CHOLESKY,
1709371c9d4SSatish Balay   MAT_FACTOR_ILU,
1719371c9d4SSatish Balay   MAT_FACTOR_ICC,
1729371c9d4SSatish Balay   MAT_FACTOR_ILUDT,
1739371c9d4SSatish Balay   MAT_FACTOR_QR,
1749371c9d4SSatish Balay   MAT_FACTOR_NUM_TYPES
1759371c9d4SSatish Balay } MatFactorType;
176014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[];
177e92e720dSBarry Smith 
178ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *);
179ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *);
180f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *);
1819371c9d4SSatish Balay PETSC_DEPRECATED_FUNCTION("Use MatFactorGetCanUseOrdering() (since version 3.15)") static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b) {
1829371c9d4SSatish Balay   return MatFactorGetCanUseOrdering(A, b);
1839371c9d4SSatish Balay }
184ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *);
185014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *);
1867abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType);
1872430ea28SJose E. Roman PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatSolverFunction)(Mat, MatFactorType, Mat *);
1882430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode            MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFunction);
1892430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode            MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFunction *);
19025ef9dfeSBarry Smith typedef MatSolverType MatSolverPackage PETSC_DEPRECATED_TYPEDEF("Use MatSolverType (since version 3.9)");
1919371c9d4SSatish Balay PETSC_DEPRECATED_FUNCTION("Use MatSolverTypeRegister() (since version 3.9)") static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFunction f) {
1929371c9d4SSatish Balay   return MatSolverTypeRegister(stype, mtype, ftype, f);
1939371c9d4SSatish Balay }
1949371c9d4SSatish Balay PETSC_DEPRECATED_FUNCTION("Use MatSolverTypeGet() (since version 3.9)") static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFunction *f) {
1959371c9d4SSatish Balay   return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f);
1969371c9d4SSatish Balay }
1979989ab13SBarry Smith 
1984222ddf1SHong Zhang /*E
1994222ddf1SHong Zhang     MatProductType - indicates what type of matrix product is requested
2004222ddf1SHong Zhang 
2014222ddf1SHong Zhang     Level: beginner
2024222ddf1SHong Zhang 
203db781477SPatrick Sanan .seealso: `MatProductSetType()`
2044222ddf1SHong Zhang E*/
2059371c9d4SSatish Balay typedef enum {
2069371c9d4SSatish Balay   MATPRODUCT_UNSPECIFIED = 0,
2079371c9d4SSatish Balay   MATPRODUCT_AB,
2089371c9d4SSatish Balay   MATPRODUCT_AtB,
2099371c9d4SSatish Balay   MATPRODUCT_ABt,
2109371c9d4SSatish Balay   MATPRODUCT_PtAP,
2119371c9d4SSatish Balay   MATPRODUCT_RARt,
2129371c9d4SSatish Balay   MATPRODUCT_ABC
2139371c9d4SSatish Balay } MatProductType;
214544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[];
2154222ddf1SHong Zhang 
2164222ddf1SHong Zhang /*J
2174222ddf1SHong Zhang     MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation
2184222ddf1SHong Zhang 
2194222ddf1SHong Zhang    Level: beginner
2204222ddf1SHong Zhang 
221db781477SPatrick Sanan .seealso: `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType`
2224222ddf1SHong Zhang J*/
2234222ddf1SHong Zhang typedef const char *MatProductAlgorithm;
2243e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT         "default"
2253e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED          "sorted"
2263e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE        "scalable"
2273e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST    "scalable_fast"
2283e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP            "heap"
2293e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP           "btheap"
2303e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED     "llcondensed"
2313e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE        "rowmerge"
2323e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT    "outerproduct"
2333e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB             "at*b"
2343e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP             "rap"
2353e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE     "nonscalable"
2363e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI          "seqmpi"
2373e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND         "backend"
2383e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING     "overlapping"
2393e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED          "merged"
2403e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE       "allatonce"
2413e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged"
2423e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV      "allgatherv"
2433e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC          "cyclic"
2443e662e0bSHong Zhang #if defined(PETSC_HAVE_HYPRE)
2453e662e0bSHong Zhang #define MATPRODUCTALGORITHMHYPRE "hypre"
2463e662e0bSHong Zhang #endif
2474222ddf1SHong Zhang 
2484222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *);
2494222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat);
2504222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType);
2514222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm);
2524222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal);
2534222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat);
2544222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat);
2554222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat);
2564222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat);
2574417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat);
2586718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer);
259c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *);
260c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *);
2614222ddf1SHong Zhang 
262c06d978dSMatthew Knepley /* Logging support */
2630700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */
264014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID;
265335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID;
266014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID;
267014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID;
268014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID;
269014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID;
270014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID;
271014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID;
272c06d978dSMatthew Knepley 
273ceb03754SKris Buschelman /*E
2747dae84e0SHong Zhang     MatReuse - Indicates if matrices obtained from a previous call to MatCreateSubMatrices(), MatCreateSubMatrix(), MatConvert() or several other functions
275cf37664fSBarry Smith      are to be reused to store the new matrix values.
276cf37664fSBarry Smith 
277cf37664fSBarry Smith $  MAT_INITIAL_MATRIX - create a new matrix
278cf37664fSBarry Smith $  MAT_REUSE_MATRIX - reuse the matrix created with a previous call that used MAT_INITIAL_MATRIX
279cf37664fSBarry Smith $  MAT_INPLACE_MATRIX - replace the first input matrix with the new matrix (not applicable to all functions)
280cf37664fSBarry Smith $  MAT_IGNORE_MATRIX - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions)
281ceb03754SKris Buschelman 
282ceb03754SKris Buschelman     Level: beginner
283ceb03754SKris Buschelman 
284af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
285ceb03754SKris Buschelman 
286db781477SPatrick Sanan .seealso: `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()`
287ceb03754SKris Buschelman E*/
2889371c9d4SSatish Balay typedef enum {
2899371c9d4SSatish Balay   MAT_INITIAL_MATRIX,
2909371c9d4SSatish Balay   MAT_REUSE_MATRIX,
2919371c9d4SSatish Balay   MAT_IGNORE_MATRIX,
2929371c9d4SSatish Balay   MAT_INPLACE_MATRIX
2939371c9d4SSatish Balay } MatReuse;
294ceb03754SKris Buschelman 
2955494a064SHong Zhang /*E
2967dae84e0SHong Zhang     MatCreateSubMatrixOption - Indicates if matrices obtained from a call to MatCreateSubMatrices()
297446c23c1SPierre Jolivet      include the matrix values. Currently it is only used by MatGetSeqNonzeroStructure().
2985494a064SHong Zhang 
2995494a064SHong Zhang     Level: beginner
3005494a064SHong Zhang 
301db781477SPatrick Sanan .seealso: `MatGetSeqNonzeroStructure()`
3025494a064SHong Zhang E*/
3039371c9d4SSatish Balay typedef enum {
3049371c9d4SSatish Balay   MAT_DO_NOT_GET_VALUES,
3059371c9d4SSatish Balay   MAT_GET_VALUES
3069371c9d4SSatish Balay } MatCreateSubMatrixOption;
3075494a064SHong Zhang 
308607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void);
309c06d978dSMatthew Knepley 
310014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *);
311014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt);
31219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType);
3130d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *);
3140d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType);
315014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat);
316fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]);
317bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat));
31823bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]);
319014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]);
32026cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]);
32126cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]);
322014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]);
323014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]);
32484d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool);
325f69a0ea3SMatthew Knepley 
326140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList;
327140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList;
328140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList;
32928988994SBarry Smith 
3303b224e63SBarry Smith /*E
331aa6c7ce3SBarry Smith     MatStructure - Indicates if two matrices have the same nonzero structure
3323b224e63SBarry Smith 
3333b224e63SBarry Smith     Level: beginner
3343b224e63SBarry Smith 
335531d0c6aSBarry Smith $  SAME_NONZERO_PATTERN  - the two matrices have identical nonzero patterns
336531d0c6aSBarry Smith $  DIFFERENT_NONZERO_PATTERN - the two matrices may have different nonzero patterns
337531d0c6aSBarry Smith $  SUBSET_NONZERO_PATTERN - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix
338531d0c6aSBarry Smith $  UNKNOWN_NONZERO_PATTERN - there is no known relationship between the nonzero patterns. In this case the implementations may try to detect a relationship to optimize the operation
339531d0c6aSBarry Smith 
340531d0c6aSBarry Smith    Developer Notes:
341d60b7d5cSBarry Smith      Any additions/changes here MUST also be made in src/mat/f90-mod/petscmat.h
3423b224e63SBarry Smith 
343db781477SPatrick Sanan .seealso: `MatCopy()`, `MatAXPY()`, `MatAYPX()`
3443b224e63SBarry Smith E*/
3459371c9d4SSatish Balay typedef enum {
3469371c9d4SSatish Balay   DIFFERENT_NONZERO_PATTERN,
3479371c9d4SSatish Balay   SUBSET_NONZERO_PATTERN,
3489371c9d4SSatish Balay   SAME_NONZERO_PATTERN,
3499371c9d4SSatish Balay   UNKNOWN_NONZERO_PATTERN
3509371c9d4SSatish Balay } MatStructure;
351d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[];
3523b224e63SBarry Smith 
3539779e05dSSatish Balay #if defined                 PETSC_HAVE_MKL_SPARSE
354ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
355ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
35680095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
357ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
35880095d54SIrina Sokolova #endif
359cd929ea3SAlp Dener 
360d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
361d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
362d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]);
363d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
36480095d54SIrina Sokolova 
365014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
366014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
367014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
369014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
3708f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
3716a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]);
372014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *);
3733b00a383SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *);
3743b00a383SHong Zhang 
375014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
376014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
377014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
3787e8381f9SStefano Zampini 
379e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]);
38082a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]);
3817e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode);
382d21a29f3SJed Brown 
383014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *);
384014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
385d21a29f3SJed Brown 
386014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
387014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
38838f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
389014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
3904cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]);
391dfb205c3SBarry Smith 
392014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *);
393c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *);
394014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *);
395c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *);
396986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *);
397267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *);
398c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *);
399014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
400014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
401c0cdd4a1SDahai Guo 
402014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *);
403014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter);
404014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *);
405014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *);
406014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat);
407014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat);
4089371c9d4SSatish Balay typedef enum {
4099371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_RIGHT,
4109371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_LEFT
4119371c9d4SSatish Balay } MatCompositeMergeType;
4128c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType);
413014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *);
4149371c9d4SSatish Balay typedef enum {
4159371c9d4SSatish Balay   MAT_COMPOSITE_ADDITIVE,
4169371c9d4SSatish Balay   MAT_COMPOSITE_MULTIPLICATIVE
4179371c9d4SSatish Balay } MatCompositeType;
418014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType);
4196dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *);
4203b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure);
4213b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *);
4226d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *);
4238b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *);
42403049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *);
4256d7c1e57SBarry Smith 
42619fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *);
427014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *);
428dedccee8SHong Zhang 
429014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *);
4308060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *);
431d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *);
43206511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *);
433fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *);
43465f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *);
43554e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *);
43654e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS);
437014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *);
4383423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *);
4391472f72bSBarry Smith 
440978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE)
441d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
442978814f1SStefano Zampini #endif
443978814f1SStefano Zampini 
444014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]);
445ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]);
4461d6018f0SLisandro Dalcin 
447846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat);
448014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat);
449014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *);
450e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *);
45121c89e3eSBarry Smith 
452014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat);
453014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat);
454014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat);
455014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *);
456014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *);
457713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **);
4580da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *);
459479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat);
4608a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *);
46199cafbc1SBarry Smith 
4628ed539a5SBarry Smith /* ------------------------------------------------------------*/
463014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
4648a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode);
465014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
466014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]);
467014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]);
468014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]);
46973a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom);
47084cb2905SBarry Smith 
4712ef4de8bSBarry Smith /*S
4722ef4de8bSBarry Smith      MatStencil - Data structure (C struct) for storing information about a single row or
47387497f52SBarry Smith         column of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()`
47462ef0227SBarry Smith 
47562ef0227SBarry Smith    The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored).
47687497f52SBarry Smith    The c represents the the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored.
47762ef0227SBarry Smith 
47887497f52SBarry Smith    For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`.
479be479b30SJed Brown 
48087497f52SBarry Smith    Fortran usage is different, see `MatSetValuesStencil()` for details.
4812ef4de8bSBarry Smith 
4822ef4de8bSBarry Smith    Level: beginner
4832ef4de8bSBarry Smith 
484db781477SPatrick Sanan .seealso: `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`
4852ef4de8bSBarry Smith S*/
486435da068SBarry Smith typedef struct {
487c1ac3661SBarry Smith   PetscInt k, j, i, c;
488435da068SBarry Smith } MatStencil;
4892ef4de8bSBarry Smith 
490014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
491014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
492014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt);
493435da068SBarry Smith 
494d91e6319SBarry Smith /*E
49587497f52SBarry Smith     MatAssemblyType - Indicates if the matrix is now to be used, for example in a solver, or if you plan
49662ef0227SBarry Smith      to continue to add or insert values to it
497d91e6319SBarry Smith 
498d91e6319SBarry Smith     Level: beginner
499d91e6319SBarry Smith 
500db781477SPatrick Sanan .seealso: `MatAssemblyBegin()`, `MatAssemblyEnd()`
501d91e6319SBarry Smith E*/
5029371c9d4SSatish Balay typedef enum {
5039371c9d4SSatish Balay   MAT_FLUSH_ASSEMBLY = 1,
5049371c9d4SSatish Balay   MAT_FINAL_ASSEMBLY = 0
5059371c9d4SSatish Balay } MatAssemblyType;
506014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType);
507014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType);
508014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *);
5094f9c727eSBarry Smith 
510d91e6319SBarry Smith /*E
511d91e6319SBarry Smith     MatOption - Options that may be set for a matrix and its behavior or storage
512d91e6319SBarry Smith 
513d91e6319SBarry Smith     Level: beginner
514d91e6319SBarry Smith 
51595452b02SPatrick Sanan    Developer Notes:
51695452b02SPatrick Sanan    Entries that are negative need not be called collectively by all processes.
517382164b0SBarry Smith 
51887497f52SBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
51987497f52SBarry Smith 
52087497f52SBarry Smith    Any additions/changes here must also be made in src/mat/interface/dlregismat.c in MatOptions[]
52187497f52SBarry Smith 
522db781477SPatrick Sanan .seealso: `MatSetOption()`
523d91e6319SBarry Smith E*/
5249371c9d4SSatish Balay typedef enum {
5259371c9d4SSatish Balay   MAT_OPTION_MIN                  = -3,
526c5e4d11fSDmitry Karpeev   MAT_UNUSED_NONZERO_LOCATION_ERR = -2,
52792d4d306SBarry Smith   MAT_ROW_ORIENTED                = -1,
528382164b0SBarry Smith   MAT_SYMMETRIC                   = 1,
529382164b0SBarry Smith   MAT_STRUCTURALLY_SYMMETRIC      = 2,
5308c78258cSHong Zhang   MAT_FORCE_DIAGONAL_ENTRIES      = 3,
531382164b0SBarry Smith   MAT_IGNORE_OFF_PROC_ENTRIES     = 4,
532382164b0SBarry Smith   MAT_USE_HASH_TABLE              = 5,
533382164b0SBarry Smith   MAT_KEEP_NONZERO_PATTERN        = 6,
534382164b0SBarry Smith   MAT_IGNORE_ZERO_ENTRIES         = 7,
535382164b0SBarry Smith   MAT_USE_INODES                  = 8,
536382164b0SBarry Smith   MAT_HERMITIAN                   = 9,
537382164b0SBarry Smith   MAT_SYMMETRY_ETERNAL            = 10,
538c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_LOCATION_ERR    = 11,
539382164b0SBarry Smith   MAT_IGNORE_LOWER_TRIANGULAR     = 12,
540382164b0SBarry Smith   MAT_ERROR_LOWER_TRIANGULAR      = 13,
541382164b0SBarry Smith   MAT_GETROW_UPPERTRIANGULAR      = 14,
542382164b0SBarry Smith   MAT_SPD                         = 15,
54392d4d306SBarry Smith   MAT_NO_OFF_PROC_ZERO_ROWS       = 16,
54492d4d306SBarry Smith   MAT_NO_OFF_PROC_ENTRIES         = 17,
54592d4d306SBarry Smith   MAT_NEW_NONZERO_LOCATIONS       = 18,
546c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_ALLOCATION_ERR  = 19,
547c5e4d11fSDmitry Karpeev   MAT_SUBSET_OFF_PROC_ENTRIES     = 20,
548c10200c1SHong Zhang   MAT_SUBMAT_SINGLEIS             = 21,
549957cac9fSHong Zhang   MAT_STRUCTURE_ONLY              = 22,
550071fcb05SBarry Smith   MAT_SORTED_FULL                 = 23,
5511a2c6b5cSJunchao Zhang   MAT_FORM_EXPLICIT_TRANSPOSE     = 24,
552b94d7dedSBarry Smith   MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25,
553b94d7dedSBarry Smith   MAT_SPD_ETERNAL                 = 26,
5549371c9d4SSatish Balay   MAT_OPTION_MAX                  = 27
5559371c9d4SSatish Balay } MatOption;
556e057df02SPaul Mullowney 
5570f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions;
558014dd563SJed Brown PETSC_EXTERN PetscErrorCode     MatSetOption(Mat, MatOption, PetscBool);
5597d68702bSBarry Smith PETSC_EXTERN PetscErrorCode     MatGetOption(Mat, MatOption, PetscBool *);
560856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode     MatPropagateSymmetryOptions(Mat, Mat);
56119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode     MatGetType(Mat, MatType *);
56284cb2905SBarry Smith 
563014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
564014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
565014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
566014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRowUpperTriangular(Mat);
567014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRowUpperTriangular(Mat);
568014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetColumnVector(Mat, Vec, PetscInt);
5698c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArray(Mat, PetscScalar *[]);
5708f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]);
571d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]);
5728c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArray(Mat, PetscScalar *[]);
5738f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]);
574d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]);
57521e72a00SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *);
576bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
5774099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetType(Mat, MatType);
578ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode    MatSeqAIJKron(Mat, Mat, MatReuse, Mat *);
579388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode    MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *));
5804099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList;
581cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJGetArray(Mat, PetscScalar *[]);
582cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJRestoreArray(Mat, PetscScalar *[]);
5838397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJGetArray(Mat, PetscScalar *[]);
5848397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]);
5858c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArray(Mat, PetscScalar *[]);
5868c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArray(Mat, PetscScalar *[]);
587d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDensePlaceArray(Mat, const PetscScalar[]);
588d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseReplaceArray(Mat, const PetscScalar[]);
589d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseResetArray(Mat);
5908572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArrayRead(Mat, const PetscScalar *[]);
5918572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayRead(Mat, const PetscScalar *[]);
5926947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWrite(Mat, PetscScalar *[]);
5936947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWrite(Mat, PetscScalar *[]);
594014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSize(Mat, PetscInt *);
595014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSize(Mat, PetscInt);
596014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSizes(Mat, PetscInt *, PetscInt *);
597014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizes(Mat, PetscInt, PetscInt);
59833d57670SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizesFromMats(Mat, Mat, Mat);
5990da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode    MatSetVariableBlockSizes(Mat, PetscInt, PetscInt *);
6000da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode    MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt **);
6010da83c2eSBarry Smith 
60286aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]);
60386aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]);
6046947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *);
6056947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *);
6066947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *);
6076947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *);
6086947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *);
6096947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *);
610a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
6115ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *);
6121620fd73SBarry Smith 
613014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec);
614014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec);
615014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec);
616014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec);
617014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec);
618014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *);
619014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *);
620014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec);
621014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec);
622014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat);
623bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat);
624eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat);
625f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec);
626f5edf698SHong Zhang 
627d91e6319SBarry Smith /*E
628d91e6319SBarry Smith     MatDuplicateOption - Indicates if a duplicated sparse matrix should have
629d91e6319SBarry Smith   its numerical values copied over or just its nonzero structure.
630d91e6319SBarry Smith 
631d91e6319SBarry Smith     Level: beginner
632d91e6319SBarry Smith 
633af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
634d91e6319SBarry Smith 
63587497f52SBarry Smith $   `MAT_DO_NOT_COPY_VALUES`    - Create a matrix using the same nonzero pattern as the original matrix,
6360018da39SRichard Tran Mills $                               with zeros for the numerical values.
63787497f52SBarry Smith $   `MAT_COPY_VALUES`           - Create a matrix with the same nonzero pattern as the original matrix
6380018da39SRichard Tran Mills $                               and with the same numerical values.
63987497f52SBarry Smith $   `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix
6400018da39SRichard Tran Mills $                               and does not copy it, using zeros for the numerical values. The parent and
6410018da39SRichard Tran Mills $                               child matrices will share their index (i and j) arrays, and you cannot
6420018da39SRichard Tran Mills $                               insert new nonzero entries into either matrix.
6430018da39SRichard Tran Mills 
64487497f52SBarry Smith   Note:
64587497f52SBarry Smith   Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in
64687497f52SBarry Smith   this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified.
64770dcbbb9SBarry Smith 
648db781477SPatrick Sanan .seealso: `MatDuplicate()`
649d91e6319SBarry Smith E*/
6509371c9d4SSatish Balay typedef enum {
6519371c9d4SSatish Balay   MAT_DO_NOT_COPY_VALUES,
6529371c9d4SSatish Balay   MAT_COPY_VALUES,
6539371c9d4SSatish Balay   MAT_SHARE_NONZERO_PATTERN
6549371c9d4SSatish Balay } MatDuplicateOption;
6552e8a6d31SBarry Smith 
65619fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *);
657014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *);
65894a9d846SBarry Smith 
659014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure);
660014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer);
661014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *);
662014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *);
663014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *);
664014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *);
665014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *);
666b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *);
667b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *);
668014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *);
669014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer);
6707b80b807SBarry Smith 
6711a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
6721a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
6731a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
6741a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
675d4fbbf0eSBarry Smith 
676d91e6319SBarry Smith /*S
67787497f52SBarry Smith      MatInfo - Context of matrix information, used with `MatGetInfo()`
678d91e6319SBarry Smith 
67987497f52SBarry Smith    In Fortran this is simply a double precision array of dimension `MAT_INFO_SIZE`
680d91e6319SBarry Smith 
681d91e6319SBarry Smith    Level: intermediate
682d91e6319SBarry Smith 
683db781477SPatrick Sanan .seealso: `MatGetInfo()`, `MatInfoType`
684d91e6319SBarry Smith S*/
6854e220ebcSLois Curfman McInnes typedef struct {
686b0a32e0cSBarry Smith   PetscLogDouble block_size;                          /* block size */
687b0a32e0cSBarry Smith   PetscLogDouble nz_allocated, nz_used, nz_unneeded;  /* number of nonzeros */
688b0a32e0cSBarry Smith   PetscLogDouble memory;                              /* memory allocated */
689b0a32e0cSBarry Smith   PetscLogDouble assemblies;                          /* number of matrix assemblies called */
690b0a32e0cSBarry Smith   PetscLogDouble mallocs;                             /* number of mallocs during MatSetValues() */
691b0a32e0cSBarry Smith   PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */
692b0a32e0cSBarry Smith   PetscLogDouble factor_mallocs;                      /* number of mallocs during factorization */
6934e220ebcSLois Curfman McInnes } MatInfo;
6944e220ebcSLois Curfman McInnes 
695d9274352SBarry Smith /*E
696d9274352SBarry Smith     MatInfoType - Indicates if you want information about the local part of the matrix,
697d9274352SBarry Smith      the entire parallel matrix or the maximum over all the local parts.
698d9274352SBarry Smith 
699d9274352SBarry Smith     Level: beginner
700d9274352SBarry Smith 
701af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
702d9274352SBarry Smith 
703db781477SPatrick Sanan .seealso: `MatGetInfo()`, `MatInfo`
704d9274352SBarry Smith E*/
7059371c9d4SSatish Balay typedef enum {
7069371c9d4SSatish Balay   MAT_LOCAL      = 1,
7079371c9d4SSatish Balay   MAT_GLOBAL_MAX = 2,
7089371c9d4SSatish Balay   MAT_GLOBAL_SUM = 3
7099371c9d4SSatish Balay } MatInfoType;
710014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *);
711014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec);
712014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]);
713014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]);
714014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]);
715014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]);
716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec);
717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *);
7187fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *);
7197fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat);
720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *);
721014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *);
722014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec);
723014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode);
724a52676ecSHong Zhang 
725014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *);
726014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *);
727014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *);
728014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
729014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
730e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
731e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
732a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
733a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
734cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
7354222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
736447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
73786919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *);
7387b80b807SBarry Smith 
739014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *);
740014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *);
741857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *);
742857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *);
743857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *);
744857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *);
745857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *);
746857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *);
747857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *);
748014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat);
7491b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat);
750014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
751014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec);
752014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
753014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
754014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
755014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec);
7567b80b807SBarry Smith 
757014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *);
758014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *);
759014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *);
760014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **);
761014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *);
762014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **);
763566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *);
7645ef9f2a5SBarry Smith 
7657dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
7669371c9d4SSatish Balay PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatrices() (since version 3.8)") static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) {
7679371c9d4SSatish Balay   return MatCreateSubMatrices(mat, n, irow, icol, scall, submat);
7689371c9d4SSatish Balay }
7697dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
7709371c9d4SSatish Balay PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatricesMPI() (since version 3.8)") static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) {
7719371c9d4SSatish Balay   return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat);
7729371c9d4SSatish Balay }
773014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]);
774df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]);
7757dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *);
7769371c9d4SSatish Balay PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatrix() (since version 3.8)") static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat) {
7779371c9d4SSatish Balay   return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat);
7789371c9d4SSatish Balay }
779014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *);
780014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *);
781014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *);
782014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *);
7837b80b807SBarry Smith 
784014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *);
785014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *);
786014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat);
787014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *);
7888a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *);
789014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
790ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *);
791f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *);
792014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *);
793014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]);
7948efafbd8SBarry Smith 
795014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt);
796aa1e27eaSFande Kong PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov);
797d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool);
7987b80b807SBarry Smith 
799014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
80022440eb1SKris Buschelman 
8017bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
8022df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
8037bab7c10SHong Zhang 
804014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *);
805014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *);
80622440eb1SKris Buschelman 
807014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
808014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *);
809bc011b1eSHong Zhang 
810014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure);
811014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure);
8121c741599SHong Zhang 
813014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar);
814014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar);
8157b80b807SBarry Smith 
816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping);
817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
818a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *);
81981fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout);
820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
824e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
827052efed2SBarry Smith 
828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt);
829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *);
83090f02eecSBarry Smith 
831014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec);
832014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec);
833014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec);
83430b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *);
83530b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *);
83630b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *);
8372a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *);
8389371c9d4SSatish Balay PETSC_DEPRECATED_FUNCTION("Use MatCreateVecs() (since version 3.6)") static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y) {
8399371c9d4SSatish Balay   return MatCreateVecs(mat, x, y);
8409371c9d4SSatish Balay }
84153cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *);
842014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *);
843014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *);
8443a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *);
8459c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *);
846bd481603SBarry Smith 
847bd481603SBarry Smith /*MC
8481620fd73SBarry Smith    MatSetValue - Set a single entry into a matrix.
8491620fd73SBarry Smith 
8501620fd73SBarry Smith    Not collective
8511620fd73SBarry Smith 
852a9834a7dSSatish Balay    Synopsis:
853a9834a7dSSatish Balay      #include <petscmat.h>
854a9834a7dSSatish Balay      PetscErrorCode MatSetValue(Mat m,PetscInt row,PetscInt col,PetscScalar value,InsertMode mode)
855a9834a7dSSatish Balay 
8561620fd73SBarry Smith    Input Parameters:
8571620fd73SBarry Smith +  m - the matrix
8581620fd73SBarry Smith .  row - the row location of the entry
8591620fd73SBarry Smith .  col - the column location of the entry
8601620fd73SBarry Smith .  value - the value to insert
86187497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
8621620fd73SBarry Smith 
8631620fd73SBarry Smith    Notes:
86487497f52SBarry Smith    For efficiency one should use `MatSetValues()` and set several values simultaneously.
8651620fd73SBarry Smith 
8661620fd73SBarry Smith    Level: beginner
8671620fd73SBarry Smith 
868db781477SPatrick Sanan .seealso: `MatGetValue()`, `MatSetValues()`, `MatSetValueLocal()`, `MatSetValuesLocal()`
8691620fd73SBarry Smith M*/
8709371c9d4SSatish Balay static inline PetscErrorCode MatSetValue(Mat v, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) {
8719371c9d4SSatish Balay   return MatSetValues(v, 1, &i, 1, &j, &va, mode);
8729371c9d4SSatish Balay }
8731620fd73SBarry Smith 
874e5e5a7b5SPatrick Sanan /*@C
875e5e5a7b5SPatrick Sanan    MatGetValue - Gets a single value from a matrix
8761620fd73SBarry Smith 
877e5e5a7b5SPatrick Sanan    Not Collective; can only return a value owned by the given process
878e5e5a7b5SPatrick Sanan 
879e5e5a7b5SPatrick Sanan    Input Parameters:
880e5e5a7b5SPatrick Sanan +  mat - the matrix
881e5e5a7b5SPatrick Sanan .  row - the row location of the entry
882e5e5a7b5SPatrick Sanan -  col - the column location of the entry
883e5e5a7b5SPatrick Sanan 
884e5e5a7b5SPatrick Sanan    Output Parameter:
885e5e5a7b5SPatrick Sanan .  va - the value
886e5e5a7b5SPatrick Sanan 
887e5e5a7b5SPatrick Sanan    Notes:
88887497f52SBarry Smith    For efficiency one should use `MatGetValues()` and get several values simultaneously.
889e5e5a7b5SPatrick Sanan 
89087497f52SBarry Smith    See notes for `MatGetValues()`.
891e5e5a7b5SPatrick Sanan 
892e5e5a7b5SPatrick Sanan    Level: advanced
893e5e5a7b5SPatrick Sanan 
894db781477SPatrick Sanan .seealso: `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()`
895e5e5a7b5SPatrick Sanan @*/
8969371c9d4SSatish Balay static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va) {
8979371c9d4SSatish Balay   return MatGetValues(mat, 1, &row, 1, &col, va);
8989371c9d4SSatish Balay }
899e5e5a7b5SPatrick Sanan 
900e5e5a7b5SPatrick Sanan /*MC
901e5e5a7b5SPatrick Sanan    MatSetValueLocal - Inserts or adds a single value into a matrix,
902e5e5a7b5SPatrick Sanan    using a local numbering of the nodes.
903e5e5a7b5SPatrick Sanan 
904e5e5a7b5SPatrick Sanan    Not Collective
905e5e5a7b5SPatrick Sanan 
906e5e5a7b5SPatrick Sanan    Input Parameters:
907e5e5a7b5SPatrick Sanan +  m - the matrix
908e5e5a7b5SPatrick Sanan .  row - the row location of the entry
909e5e5a7b5SPatrick Sanan .  col - the column location of the entry
910e5e5a7b5SPatrick Sanan .  value - the value to insert
91187497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
912e5e5a7b5SPatrick Sanan 
913e5e5a7b5SPatrick Sanan    Notes:
91487497f52SBarry Smith    For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously.
915e5e5a7b5SPatrick Sanan 
91687497f52SBarry Smith    See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used.
917e5e5a7b5SPatrick Sanan 
918e5e5a7b5SPatrick Sanan    Level: intermediate
919e5e5a7b5SPatrick Sanan 
920db781477SPatrick Sanan .seealso: `MatSetValue()`, `MatSetValuesLocal()`
921e5e5a7b5SPatrick Sanan M*/
9229371c9d4SSatish Balay static inline PetscErrorCode MatSetValueLocal(Mat v, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) {
9239371c9d4SSatish Balay   return MatSetValuesLocal(v, 1, &i, 1, &j, &va, mode);
9249371c9d4SSatish Balay }
9251620fd73SBarry Smith 
9261620fd73SBarry Smith /*MC
927d0609cedSBarry Smith    MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per
928bd481603SBarry Smith        row in a matrix providing the data that one can use to correctly preallocate the matrix.
929bd481603SBarry Smith 
930bd481603SBarry Smith    Synopsis:
931aaa7dc30SBarry Smith    #include <petscmat.h>
932d0609cedSBarry Smith    PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz)
933bd481603SBarry Smith 
934d083f849SBarry Smith    Collective
935bd481603SBarry Smith 
936bd481603SBarry Smith    Input Parameters:
937bd481603SBarry Smith +  comm - the communicator that will share the eventually allocated matrix
938859fcb39SBarry Smith .  nrows - the number of LOCAL rows in the matrix
939859fcb39SBarry Smith -  ncols - the number of LOCAL columns in the matrix
940bd481603SBarry Smith 
941bd481603SBarry Smith    Output Parameters:
942bd481603SBarry Smith +  dnz - the array that will be passed to the matrix preallocation routines
943a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
944bd481603SBarry Smith 
945bd481603SBarry Smith    Level: intermediate
946bd481603SBarry Smith 
947bd481603SBarry Smith    Notes:
948d0609cedSBarry Smith     This is a macro that handles its own error checking, it does not return an error code.
949d0609cedSBarry Smith 
950a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
951bd481603SBarry Smith 
9521d73ed98SBarry Smith     Do not malloc or free dnz and onz, that is handled internally by these routines
953bd481603SBarry Smith 
954d0609cedSBarry Smith    Developer Notes:
9551620fd73SBarry Smith     This is a MACRO not a function because it has a leading { that is closed by PetscPreallocateFinalize().
9561620fd73SBarry Smith 
957db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
958db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
959bd481603SBarry Smith M*/
9609371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \
9619371c9d4SSatish Balay   do { \
9625f80ce2aSJacob Faibussowitsch     PetscInt __nrows = (nrows), __ncols = (ncols), __rstart, __start, __end = 0; \
9639566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \
9649566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \
9659371c9d4SSatish Balay     __start = __end - __ncols; \
9669371c9d4SSatish Balay     (void)__start; \
9679566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \
9685f80ce2aSJacob Faibussowitsch   __rstart -= __nrows
9697c922b88SBarry Smith 
970d0609cedSBarry Smith #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO("GCC warning \"Use MatPreallocateBegin() (since version 3.18)\"") MatPreallocateBegin(__VA_ARGS__)
971d0609cedSBarry Smith 
972bd481603SBarry Smith /*MC
973bd481603SBarry Smith    MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be
974bd481603SBarry Smith        inserted using a local number of the rows and columns
975bd481603SBarry Smith 
976bd481603SBarry Smith    Synopsis:
977aaa7dc30SBarry Smith    #include <petscmat.h>
978c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
979bd481603SBarry Smith 
980bd481603SBarry Smith    Not Collective
981bd481603SBarry Smith 
982bd481603SBarry Smith    Input Parameters:
983784ac674SJed Brown +  map - the row mapping from local numbering to global numbering
984bd481603SBarry Smith .  nrows - the number of rows indicated
9851d73ed98SBarry Smith .  rows - the indices of the rows
986784ac674SJed Brown .  cmap - the column mapping from local to global numbering
987bd481603SBarry Smith .  ncols - the number of columns in the matrix
988bd481603SBarry Smith .  cols - the columns indicated
989bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
990a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
991bd481603SBarry Smith 
992bd481603SBarry Smith    Level: intermediate
993bd481603SBarry Smith 
994bd481603SBarry Smith    Notes:
995a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
996bd481603SBarry Smith 
9971d73ed98SBarry Smith    Do not malloc or free dnz and onz, that is handled internally by these routines
998bd481603SBarry Smith 
999db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1000db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()`
1001bd481603SBarry Smith M*/
100294bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
10039371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1004c4f061fbSSatish Balay 
1005bd481603SBarry Smith /*MC
1006c1154cd5SBarry Smith    MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1007c1154cd5SBarry Smith        inserted using a local number of the rows and columns. This version removes any duplicate columns in cols
1008c1154cd5SBarry Smith 
1009c1154cd5SBarry Smith    Synopsis:
1010c1154cd5SBarry Smith    #include <petscmat.h>
1011c1154cd5SBarry Smith    PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1012c1154cd5SBarry Smith 
1013c1154cd5SBarry Smith    Not Collective
1014c1154cd5SBarry Smith 
1015c1154cd5SBarry Smith    Input Parameters:
1016c1154cd5SBarry Smith +  map - the row mapping from local numbering to global numbering
1017c1154cd5SBarry Smith .  nrows - the number of rows indicated
1018c1154cd5SBarry Smith .  rows - the indices of the rows (these values are mapped to the global values)
1019c1154cd5SBarry Smith .  cmap - the column mapping from local to global numbering
1020c1154cd5SBarry Smith .  ncols - the number of columns in the matrix   (this value will be changed if duplicate columns are found)
1021c1154cd5SBarry Smith .  cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed)
1022c1154cd5SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1023a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1024c1154cd5SBarry Smith 
1025c1154cd5SBarry Smith    Level: intermediate
1026c1154cd5SBarry Smith 
1027c1154cd5SBarry Smith    Notes:
1028c1154cd5SBarry Smith     See Users-Manual: ch_performance for more details.
1029c1154cd5SBarry Smith 
1030c1154cd5SBarry Smith    Do not malloc or free dnz and onz, that is handled internally by these routines
1031c1154cd5SBarry Smith 
1032db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1033db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1034c1154cd5SBarry Smith M*/
103594bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
10369371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1037c1154cd5SBarry Smith 
1038c1154cd5SBarry Smith /*MC
1039d6e23781SBarry Smith    MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1040bd481603SBarry Smith        inserted using a local number of the rows and columns
1041bd481603SBarry Smith 
1042bd481603SBarry Smith    Synopsis:
1043aaa7dc30SBarry Smith    #include <petscmat.h>
1044d6e23781SBarry Smith    PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1045d6e23781SBarry Smith 
1046d6e23781SBarry Smith    Not Collective
1047d6e23781SBarry Smith 
1048d6e23781SBarry Smith    Input Parameters:
1049d6e23781SBarry Smith +  map - the row mapping from local numbering to global numbering
1050d6e23781SBarry Smith .  nrows - the number of rows indicated
1051d6e23781SBarry Smith .  rows - the indices of the rows
1052d6e23781SBarry Smith .  cmap - the column mapping from local to global numbering
1053d6e23781SBarry Smith .  ncols - the number of columns in the matrix
1054d6e23781SBarry Smith .  cols - the columns indicated
1055d6e23781SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1056a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1057d6e23781SBarry Smith 
1058d6e23781SBarry Smith    Level: intermediate
1059d6e23781SBarry Smith 
1060d6e23781SBarry Smith    Notes:
1061d6e23781SBarry Smith     See Users-Manual: ch_performance for more details.
1062d6e23781SBarry Smith 
1063d6e23781SBarry Smith    Do not malloc or free dnz and onz, that is handled internally by these routines
1064d6e23781SBarry Smith 
1065db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1066db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`
1067d6e23781SBarry Smith M*/
106894bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
10699371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1070d6e23781SBarry Smith 
1071d6e23781SBarry Smith /*MC
1072d6e23781SBarry Smith    MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1073d6e23781SBarry Smith        inserted using a local number of the rows and columns
1074d6e23781SBarry Smith 
1075d6e23781SBarry Smith    Synopsis:
1076d6e23781SBarry Smith    #include <petscmat.h>
1077d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1078bd481603SBarry Smith 
1079bd481603SBarry Smith    Not Collective
1080bd481603SBarry Smith 
1081bd481603SBarry Smith    Input Parameters:
1082bd481603SBarry Smith +  map - the mapping between local numbering and global numbering
1083bd481603SBarry Smith .  nrows - the number of rows indicated
10841d73ed98SBarry Smith .  rows - the indices of the rows
1085bd481603SBarry Smith .  ncols - the number of columns in the matrix
1086bd481603SBarry Smith .  cols - the columns indicated
1087bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1088a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1089bd481603SBarry Smith 
1090bd481603SBarry Smith    Level: intermediate
1091bd481603SBarry Smith 
1092bd481603SBarry Smith    Notes:
1093a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
1094bd481603SBarry Smith 
1095bd481603SBarry Smith    Do not malloc or free dnz and onz that is handled internally by these routines
1096bd481603SBarry Smith 
1097db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`
1098db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1099bd481603SBarry Smith M*/
110094bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \
11019371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));)
1102e83a5d19SLisandro Dalcin 
1103bd481603SBarry Smith /*MC
1104bd481603SBarry Smith    MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1105bd481603SBarry Smith        inserted using a local number of the rows and columns
1106bd481603SBarry Smith 
1107bd481603SBarry Smith    Synopsis:
1108aaa7dc30SBarry Smith    #include <petscmat.h>
1109c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1110bd481603SBarry Smith 
1111bd481603SBarry Smith    Not Collective
1112bd481603SBarry Smith 
1113bd481603SBarry Smith    Input Parameters:
111464075487SBarry Smith +  row - the row
1115bd481603SBarry Smith .  ncols - the number of columns in the matrix
1116a50f8bf6SHong Zhang -  cols - the columns indicated
1117a50f8bf6SHong Zhang 
1118a50f8bf6SHong Zhang    Output Parameters:
1119a50f8bf6SHong Zhang +  dnz - the array that will be passed to the matrix preallocation routines
1120a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1121bd481603SBarry Smith 
1122bd481603SBarry Smith    Level: intermediate
1123bd481603SBarry Smith 
1124bd481603SBarry Smith    Notes:
1125a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
1126bd481603SBarry Smith 
1127bd481603SBarry Smith    Do not malloc or free dnz and onz that is handled internally by these routines
1128bd481603SBarry Smith 
1129d0609cedSBarry Smith    This is a MACRO not a function because it uses variables declared in MatPreallocateBegin().
11301620fd73SBarry Smith 
1131db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1132db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1133bd481603SBarry Smith M*/
11349371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \
11359371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \
113664075487SBarry Smith     if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \
1137a6042fd4SStefano Zampini     else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
11389371c9d4SSatish Balay   })
11397c922b88SBarry Smith 
1140bd481603SBarry Smith /*MC
1141d6e23781SBarry Smith    MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1142bd481603SBarry Smith        inserted using a local number of the rows and columns
1143bd481603SBarry Smith 
1144bd481603SBarry Smith    Synopsis:
1145aaa7dc30SBarry Smith    #include <petscmat.h>
1146d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1147bd481603SBarry Smith 
1148bd481603SBarry Smith    Not Collective
1149bd481603SBarry Smith 
1150bd481603SBarry Smith    Input Parameters:
1151bd481603SBarry Smith +  nrows - the number of rows indicated
11521d73ed98SBarry Smith .  rows - the indices of the rows
1153bd481603SBarry Smith .  ncols - the number of columns in the matrix
1154bd481603SBarry Smith .  cols - the columns indicated
1155bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1156a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1157bd481603SBarry Smith 
1158bd481603SBarry Smith    Level: intermediate
1159bd481603SBarry Smith 
1160bd481603SBarry Smith    Notes:
1161a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
1162bd481603SBarry Smith 
1163bd481603SBarry Smith    Do not malloc or free dnz and onz that is handled internally by these routines
1164bd481603SBarry Smith 
1165d0609cedSBarry Smith    This is a MACRO not a function because it uses variables declared in MatPreallocateBegin().
11661620fd73SBarry Smith 
1167db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`,
1168db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1169bd481603SBarry Smith M*/
117094bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \
11719371c9d4SSatish Balay   PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \
1172d3d32019SBarry Smith     if (cols[__i] >= __end) onz[row - __rstart]++; \
1173a6042fd4SStefano Zampini     else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
11749371c9d4SSatish Balay   })
1175d3d32019SBarry Smith 
1176bd481603SBarry Smith /*MC
1177a6042fd4SStefano Zampini    MatPreallocateLocation -  An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists
117816371a99SBarry Smith 
117916371a99SBarry Smith    Synopsis:
1180aaa7dc30SBarry Smith    #include <petscmat.h>
118116371a99SBarry Smith    PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz)
118216371a99SBarry Smith 
118316371a99SBarry Smith    Not Collective
118416371a99SBarry Smith 
118516371a99SBarry Smith    Input Parameters:
1186a2b725a8SWilliam Gropp +  A - matrix
118716371a99SBarry Smith .  row - row where values exist (must be local to this process)
118816371a99SBarry Smith .  ncols - number of columns
118916371a99SBarry Smith .  cols - columns with nonzeros
119016371a99SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1191a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
119216371a99SBarry Smith 
119316371a99SBarry Smith    Level: intermediate
119416371a99SBarry Smith 
119516371a99SBarry Smith    Notes:
1196a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
119716371a99SBarry Smith 
119816371a99SBarry Smith    Do not malloc or free dnz and onz that is handled internally by these routines
119916371a99SBarry Smith 
120016371a99SBarry Smith    This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines.
120116371a99SBarry Smith 
1202db781477SPatrick Sanan .seealso: `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1203db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
120416371a99SBarry Smith M*/
1205d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz))
120616371a99SBarry Smith 
120716371a99SBarry Smith /*MC
1208d0609cedSBarry Smith    MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per
1209bd481603SBarry Smith        row in a matrix providing the data that one can use to correctly preallocate the matrix.
1210bd481603SBarry Smith 
1211bd481603SBarry Smith    Synopsis:
1212aaa7dc30SBarry Smith    #include <petscmat.h>
1213d0609cedSBarry Smith    PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz)
1214bd481603SBarry Smith 
1215d083f849SBarry Smith    Collective
1216bd481603SBarry Smith 
1217bd481603SBarry Smith    Input Parameters:
121816371a99SBarry Smith +  dnz - the array that was be passed to the matrix preallocation routines
1219a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1220bd481603SBarry Smith 
1221bd481603SBarry Smith    Level: intermediate
1222bd481603SBarry Smith 
1223bd481603SBarry Smith    Notes:
1224d0609cedSBarry Smith     This is a macro that handles its own error checking, it does not return an error code.
1225d0609cedSBarry Smith 
1226a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
1227bd481603SBarry Smith 
1228d0609cedSBarry Smith     Do not malloc or free dnz and onz, that is handled internally by these routines
1229bd481603SBarry Smith 
1230d0609cedSBarry Smith    Developer Notes:
1231d0609cedSBarry Smith     This is a MACRO not a function because it closes the { started in MatPreallocateBegin().
12321620fd73SBarry Smith 
1233db781477SPatrick Sanan .seealso: `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1234db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1235bd481603SBarry Smith M*/
12369371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \
12379371c9d4SSatish Balay   PetscCall(PetscFree2(dnz, onz)); \
12389371c9d4SSatish Balay   } \
12399371c9d4SSatish Balay   while (0)
1240d0609cedSBarry Smith 
1241d0609cedSBarry Smith #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO("GCC warning \"Use MatPreallocateEnd() (since version 3.18)\"") MatPreallocateEnd(__VA_ARGS__)
12427c922b88SBarry Smith 
12437b80b807SBarry Smith /* Routines unique to particular data structures */
1244014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *);
1245698d4c6aSKris Buschelman 
1246014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *);
1247014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *);
1248698d4c6aSKris Buschelman 
1249014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]);
1250014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]);
1251014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1252014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1253014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1254014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool);
12557b80b807SBarry Smith 
1256a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4
1257a96a251dSBarry Smith 
1258014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1259014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1260014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]);
126119b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt);
1262273d9f13SBarry Smith 
1263014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1264014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1265014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1266014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1267014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1268014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1269014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1270014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]);
1271b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *);
1272252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *);
1273014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]);
1274014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]);
12759230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
12769230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
1277014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *);
1278273d9f13SBarry Smith 
127949a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *);
1280ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt);
12819371c9d4SSatish Balay PETSC_DEPRECATED_FUNCTION("Use MatDenseSetLDA() (since version 3.14)") static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda) {
12829371c9d4SSatish Balay   return MatDenseSetLDA(A, lda);
12839371c9d4SSatish Balay }
1284014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *);
12851b807ce4Svictorle 
1286621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1287621e819fSSatish Balay 
1288014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat);
1289014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat);
12902e8a6d31SBarry Smith 
1291014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *);
12927cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *);
12937b80b807SBarry Smith /*
12947b80b807SBarry Smith   These routines are not usually accessed directly, rather solving is
129594b7f48cSBarry Smith   done through the KSP and PC interfaces.
12967b80b807SBarry Smith */
12977b80b807SBarry Smith 
129876bdecfbSBarry Smith /*J
12998f6c3df8SBarry Smith     MatOrderingType - String with the name of a PETSc matrix ordering
1300d9274352SBarry Smith 
1301d9274352SBarry Smith    Level: beginner
1302d9274352SBarry Smith 
13032c7c0729SBarry Smith    Notes:
130487497f52SBarry Smith       If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and utilizes one built into the factorization package
13052c7c0729SBarry Smith 
1306db781477SPatrick Sanan .seealso: `MatGetOrdering()`
130776bdecfbSBarry Smith J*/
130819fd82e9SBarry Smith typedef const char *MatOrderingType;
13092692d6eeSBarry Smith #define MATORDERINGNATURAL       "natural"
13102692d6eeSBarry Smith #define MATORDERINGND            "nd"
13112692d6eeSBarry Smith #define MATORDERING1WD           "1wd"
13122692d6eeSBarry Smith #define MATORDERINGRCM           "rcm"
13132692d6eeSBarry Smith #define MATORDERINGQMD           "qmd"
13142692d6eeSBarry Smith #define MATORDERINGROWLENGTH     "rowlength"
1315510184a7SJed Brown #define MATORDERINGWBM           "wbm"
1316fc1bef75SJed Brown #define MATORDERINGSPECTRAL      "spectral"
1317312e372aSBarry Smith #define MATORDERINGAMD           "amd"           /* only works if UMFPACK is installed with PETSc */
1318048412efSPablo Brubeck #define MATORDERINGMETISND       "metisnd"       /* only works if METIS is installed with PETSc */
13199bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */
13202c7c0729SBarry Smith #define MATORDERINGEXTERNAL      "external"      /* uses an ordering type internal to the factorization package */
1321b12f92e5SBarry Smith 
132219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrdering(Mat, MatOrderingType, IS *, IS *);
1323140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrderingList(PetscFunctionList *);
1324bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode    MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *));
1325140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList;
1326d4fbbf0eSBarry Smith 
1327*013e2dc7SBarry Smith #include "petscmatcoarsen.h"
1328*013e2dc7SBarry Smith 
1329014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS);
1330fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *);
1331a2ce50c7SBarry Smith 
13324ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *);
13334ac6704cSBarry Smith 
1334d91e6319SBarry Smith /*S
1335ec5066bdSBarry Smith     MatFactorShiftType - Numeric Shift for factorizations
1336d90ac83dSHong Zhang 
1337d90ac83dSHong Zhang    Level: beginner
1338d90ac83dSHong Zhang 
1339db781477SPatrick Sanan .seealso: `MatGetFactor()`
1340d90ac83dSHong Zhang S*/
13419371c9d4SSatish Balay typedef enum {
13429371c9d4SSatish Balay   MAT_SHIFT_NONE,
13439371c9d4SSatish Balay   MAT_SHIFT_NONZERO,
13449371c9d4SSatish Balay   MAT_SHIFT_POSITIVE_DEFINITE,
13459371c9d4SSatish Balay   MAT_SHIFT_INBLOCKS
13469371c9d4SSatish Balay } MatFactorShiftType;
13476a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[];
13485e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[];
1349d90ac83dSHong Zhang 
1350d90ac83dSHong Zhang /*S
1351ec5066bdSBarry Smith     MatFactorError - indicates what type of error was generated in a matrix factorization
13529aa7eafdSHong Zhang 
13539aa7eafdSHong Zhang     Level: beginner
13549aa7eafdSHong Zhang 
135587497f52SBarry Smith     Developer Note:
135695452b02SPatrick Sanan     Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
135700e125f8SBarry Smith 
1358db781477SPatrick Sanan .seealso: `MatGetFactor()`
13599aa7eafdSHong Zhang S*/
13609371c9d4SSatish Balay typedef enum {
13619371c9d4SSatish Balay   MAT_FACTOR_NOERROR,
13629371c9d4SSatish Balay   MAT_FACTOR_STRUCT_ZEROPIVOT,
13639371c9d4SSatish Balay   MAT_FACTOR_NUMERIC_ZEROPIVOT,
13649371c9d4SSatish Balay   MAT_FACTOR_OUTMEMORY,
13659371c9d4SSatish Balay   MAT_FACTOR_OTHER
13669371c9d4SSatish Balay } MatFactorError;
13679aa7eafdSHong Zhang 
136800e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *);
1369b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat);
13707b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *);
137100e125f8SBarry Smith 
13729aa7eafdSHong Zhang /*S
1373422a814eSBarry Smith    MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization
1374b00f7748SHong Zhang 
137587497f52SBarry Smith    In Fortran these are simply double precision arrays of size `MAT_FACTORINFO_SIZE`, that is use
137661cad860SBarry Smith $     MatFactorInfo  info(MAT_FACTORINFO_SIZE)
1377b00f7748SHong Zhang 
137895452b02SPatrick Sanan    Notes:
137987497f52SBarry Smith     These are not usually directly used by users, instead use `PC` type of `PCLU`, `PCILU`, `PCCHOLESKY` or `PCICC`.
1380b00f7748SHong Zhang 
138187497f52SBarry Smith       You can use `MatFactorInfoInitialize()` to set default values.
138261cad860SBarry Smith 
1383b00f7748SHong Zhang    Level: developer
1384b00f7748SHong Zhang 
1385db781477SPatrick Sanan .seealso: `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, `MatICCFactorSymbolic()`, `MatICCFactor()`,
1386db781477SPatrick Sanan           `MatFactorInfoInitialize()`
1387b00f7748SHong Zhang 
1388b00f7748SHong Zhang S*/
1389b00f7748SHong Zhang typedef struct {
139015e8a5b3SHong Zhang   PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */
139185317021SBarry Smith   PetscReal usedt;
139215e8a5b3SHong Zhang   PetscReal dt;            /* drop tolerance */
1393b00f7748SHong Zhang   PetscReal dtcol;         /* tolerance for pivoting */
139415e8a5b3SHong Zhang   PetscReal dtcount;       /* maximum nonzeros to be allowed per row */
139567e28bfeSBarry Smith   PetscReal fill;          /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */
1396348344bbSBarry Smith   PetscReal levels;        /* ICC/ILU(levels) */
1397bcd9e38bSBarry Smith   PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0
1398bcd9e38bSBarry Smith                                    factorization may be faster if do not pivot */
139915e8a5b3SHong Zhang   PetscReal zeropivot;     /* pivot is called zero if less than this */
1400f4db908eSBarry Smith   PetscReal shifttype;     /* type of shift added to matrix factor to prevent zero pivots */
1401f4db908eSBarry Smith   PetscReal shiftamount;   /* how large the shift is */
140215e8a5b3SHong Zhang } MatFactorInfo;
1403ffa6d0a5SLois Curfman McInnes 
1404014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *);
14059a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *);
14069a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
14079a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *);
14089a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *);
14099a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *);
14109a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
14119a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
14129a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
14139a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *);
14149a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *);
14153f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *);
14163f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
14173f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *);
1418014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *);
1419014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec);
1420014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec);
1421014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec);
1422014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec);
1423014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec);
1424014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec);
1425014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs);
14267c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat);
14277c2f51b8SStefano Zampini 
14289371c9d4SSatish Balay typedef enum {
14299371c9d4SSatish Balay   MAT_FACTOR_SCHUR_UNFACTORED,
14309371c9d4SSatish Balay   MAT_FACTOR_SCHUR_FACTORED,
14319371c9d4SSatish Balay   MAT_FACTOR_SCHUR_INVERTED
14329371c9d4SSatish Balay } MatFactorSchurStatus;
14338e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS);
14347c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
14357c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus);
14365a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat);
14377c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
14385a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec);
14395a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec);
14406dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat);
1441bb5a7306SBarry Smith 
14428a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat);
1443d91e6319SBarry Smith /*E
1444d91e6319SBarry Smith     MatSORType - What type of (S)SOR to perform
1445bb1eb677SSatish Balay 
1446d91e6319SBarry Smith     Level: beginner
1447d91e6319SBarry Smith 
1448d9274352SBarry Smith    May be bitwise ORd together
1449d9274352SBarry Smith 
145087497f52SBarry Smith    Developer Notes:
1451af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
1452d91e6319SBarry Smith 
145387497f52SBarry Smith   `MatSORType` may be bitwise ORd together, so do not change the numerical values
14544e7234bfSBarry Smith 
1455db781477SPatrick Sanan .seealso: `MatSOR()`
1456d91e6319SBarry Smith E*/
14579371c9d4SSatish Balay typedef enum {
14589371c9d4SSatish Balay   SOR_FORWARD_SWEEP         = 1,
14599371c9d4SSatish Balay   SOR_BACKWARD_SWEEP        = 2,
14609371c9d4SSatish Balay   SOR_SYMMETRIC_SWEEP       = 3,
14619371c9d4SSatish Balay   SOR_LOCAL_FORWARD_SWEEP   = 4,
14629371c9d4SSatish Balay   SOR_LOCAL_BACKWARD_SWEEP  = 8,
14639371c9d4SSatish Balay   SOR_LOCAL_SYMMETRIC_SWEEP = 12,
14649371c9d4SSatish Balay   SOR_ZERO_INITIAL_GUESS    = 16,
14659371c9d4SSatish Balay   SOR_EISENSTAT             = 32,
14669371c9d4SSatish Balay   SOR_APPLY_UPPER           = 64,
14679371c9d4SSatish Balay   SOR_APPLY_LOWER           = 128
14689371c9d4SSatish Balay } MatSORType;
1469014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
14708ed539a5SBarry Smith 
14717086a01eSPeter Brune /*S
14727086a01eSPeter Brune      MatColoring - Object for managing the coloring of matrices.
14737086a01eSPeter Brune 
14747086a01eSPeter Brune    Level: beginner
14757086a01eSPeter Brune 
1476ec5066bdSBarry Smith     Notes:
147787497f52SBarry Smith        Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
147887497f52SBarry Smith        matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors).
1479ec5066bdSBarry Smith 
148087497f52SBarry Smith        Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This
1481ec5066bdSBarry Smith        same object can also be used to efficiently convert data created by Automatic Differentation tools to PETSc sparse matrices.
1482ec5066bdSBarry Smith 
1483db781477SPatrick Sanan .seealso: `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`, `MatOrdering`, `MatPartitioning`, `MatColoringType`
14847086a01eSPeter Brune S*/
1485d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring;
1486d4db15c4SBarry Smith 
1487d4db15c4SBarry Smith /*J
1488d4db15c4SBarry Smith     MatColoringType - String with the name of a PETSc matrix coloring
1489d9274352SBarry Smith 
1490d9274352SBarry Smith    Level: beginner
1491d9274352SBarry Smith 
1492db781477SPatrick Sanan .seealso: `MatColoringSetType()`, `MatColoring`
149376bdecfbSBarry Smith J*/
149419fd82e9SBarry Smith typedef const char *MatColoringType;
14955567d71aSPeter Brune #define MATCOLORINGJP      "jp"
1496b9acb617SPeter Brune #define MATCOLORINGPOWER   "power"
14972692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural"
14982692d6eeSBarry Smith #define MATCOLORINGSL      "sl"
14992692d6eeSBarry Smith #define MATCOLORINGLF      "lf"
15002692d6eeSBarry Smith #define MATCOLORINGID      "id"
15018121bdceSPeter Brune #define MATCOLORINGGREEDY  "greedy"
1502b12f92e5SBarry Smith 
15038ac6da0aSPeter Brune /*E
15048ac6da0aSPeter Brune    MatColoringWeightType - Type of weight scheme
15058ac6da0aSPeter Brune 
15068ac6da0aSPeter Brune     Not Collective
15078ac6da0aSPeter Brune 
150887497f52SBarry Smith +   `MAT_COLORING_RANDOM`  - Random weights
150987497f52SBarry Smith .   `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering.
151087497f52SBarry Smith -   `MAT_COLORING_LF`      - Last-first weighting.
15118ac6da0aSPeter Brune 
15128ac6da0aSPeter Brune     Level: intermediate
15138ac6da0aSPeter Brune 
151487497f52SBarry Smith    Developer Note:
1515af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
1516ec5066bdSBarry Smith 
1517db781477SPatrick Sanan .seealso: `MatColoring`, `MatColoringCreate()`
15188ac6da0aSPeter Brune E*/
15199371c9d4SSatish Balay typedef enum {
15209371c9d4SSatish Balay   MAT_COLORING_WEIGHT_RANDOM,
15219371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LEXICAL,
15229371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LF,
15239371c9d4SSatish Balay   MAT_COLORING_WEIGHT_SL
15249371c9d4SSatish Balay } MatColoringWeightType;
15258ac6da0aSPeter Brune 
1526335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *);
1527d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *);
1528335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *);
1529335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer);
1530335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType);
1531335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring);
1532335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt);
1533335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *);
1534335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt);
1535335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *);
1536335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *);
1537335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring));
1538014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *);
15398ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType);
1540c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *);
15418ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm);
1542bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring);
15439371c9d4SSatish Balay PETSC_DEPRECATED_FUNCTION("Use MatColoringTest() (since version 3.10)") static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring) {
15449371c9d4SSatish Balay   return MatColoringTest(matcoloring, iscoloring);
15459371c9d4SSatish Balay }
1546bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring);
1547639f9d9dSBarry Smith 
1548d9274352SBarry Smith /*S
154987497f52SBarry Smith      MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring
1550639f9d9dSBarry Smith 
1551d9274352SBarry Smith    Level: beginner
1552d9274352SBarry Smith 
1553ec5066bdSBarry Smith    Notes:
155487497f52SBarry Smith       This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()`
1555ec5066bdSBarry Smith 
155687497f52SBarry Smith .seealso: `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()`
1557d9274352SBarry Smith S*/
1558e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring;
1559639f9d9dSBarry Smith 
1560014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *);
1561014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *);
1562014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer);
1563014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *);
1564014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **);
1565014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal);
1566014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring);
1567d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *);
1568014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec);
1569edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]);
1570f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring);
1571f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt);
1572bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *);
1573b1683b59SHong Zhang 
1574b1683b59SHong Zhang /*S
1575b9af6bddSHong Zhang      MatTransposeColoring - Object for computing a sparse matrix product C=A*B^T via coloring
1576b1683b59SHong Zhang 
1577b1683b59SHong Zhang    Level: beginner
1578b1683b59SHong Zhang 
1579db781477SPatrick Sanan .seealso: `MatTransposeColoringCreate()`
1580b1683b59SHong Zhang S*/
1581b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring;
1582b1683b59SHong Zhang 
1583014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *);
1584014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat);
1585014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat);
1586014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *);
1587b1683b59SHong Zhang 
1588d9274352SBarry Smith /*S
1589d9274352SBarry Smith      MatPartitioning - Object for managing the partitioning of a matrix or graph
1590d9274352SBarry Smith 
1591d9274352SBarry Smith    Level: beginner
1592d9274352SBarry Smith 
159387497f52SBarry Smith    Note:
159487497f52SBarry Smith      There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations
159587497f52SBarry Smith      via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`)
1596ec5066bdSBarry Smith 
1597ec5066bdSBarry Smith    Developers Note:
1598ec5066bdSBarry Smith      It is an extra maintainance and documentation cost to have two objects with the same functionality.
1599ec5066bdSBarry Smith 
1600db781477SPatrick Sanan .seealso: `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`
1601d9274352SBarry Smith S*/
160291e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning;
1603d9274352SBarry Smith 
160476bdecfbSBarry Smith /*J
16058f6c3df8SBarry Smith     MatPartitioningType - String with the name of a PETSc matrix partitioning
1606d9274352SBarry Smith 
1607d9274352SBarry Smith    Level: beginner
16080d04baf8SBarry Smith dm
160987497f52SBarry Smith .seealso: `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`
161076bdecfbSBarry Smith J*/
161119fd82e9SBarry Smith typedef const char *MatPartitioningType;
16122692d6eeSBarry Smith #define MATPARTITIONINGCURRENT  "current"
1613aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE  "average"
16142692d6eeSBarry Smith #define MATPARTITIONINGSQUARE   "square"
16152692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis"
16162692d6eeSBarry Smith #define MATPARTITIONINGCHACO    "chaco"
16172692d6eeSBarry Smith #define MATPARTITIONINGPARTY    "party"
161850d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch"
161988d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch"
162071306c60Sjroman 
1621014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *);
162219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType);
1623014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt);
1624014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat);
1625252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt);
1626014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]);
1627014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]);
1628ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool);
1629ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *);
1630014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *);
1631fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *);
1632668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS);
1633f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *);
1634014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *);
1635bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning));
1636014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer);
1637fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]);
1638014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning);
163919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *);
1640ca161407SBarry Smith 
164127538973SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part);
1642014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning);
1643014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *);
16440752156aSBarry Smith 
16459371c9d4SSatish Balay typedef enum {
16469371c9d4SSatish Balay   MP_CHACO_MULTILEVEL = 1,
16479371c9d4SSatish Balay   MP_CHACO_SPECTRAL   = 2,
16489371c9d4SSatish Balay   MP_CHACO_LINEAR     = 4,
16499371c9d4SSatish Balay   MP_CHACO_RANDOM     = 5,
16509371c9d4SSatish Balay   MP_CHACO_SCATTERED  = 6
16519371c9d4SSatish Balay } MPChacoGlobalType;
16526a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[];
16539371c9d4SSatish Balay typedef enum {
16549371c9d4SSatish Balay   MP_CHACO_KERNIGHAN = 1,
16559371c9d4SSatish Balay   MP_CHACO_NONE      = 2
16569371c9d4SSatish Balay } MPChacoLocalType;
16576a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[];
16589371c9d4SSatish Balay typedef enum {
16599371c9d4SSatish Balay   MP_CHACO_LANCZOS = 0,
16609371c9d4SSatish Balay   MP_CHACO_RQI     = 1
16619371c9d4SSatish Balay } MPChacoEigenType;
16626a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[];
1663b6956c12SJose Roman 
1664014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType);
1665014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *);
1666014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType);
1667014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *);
1668014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal);
1669014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType);
1670014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *);
1671014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal);
1672014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *);
1673014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt);
1674014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *);
167571306c60Sjroman 
167671306c60Sjroman #define MP_PARTY_OPT "opt"
167771306c60Sjroman #define MP_PARTY_LIN "lin"
167871306c60Sjroman #define MP_PARTY_SCA "sca"
167971306c60Sjroman #define MP_PARTY_RAN "ran"
168071306c60Sjroman #define MP_PARTY_GBF "gbf"
168171306c60Sjroman #define MP_PARTY_GCF "gcf"
168271306c60Sjroman #define MP_PARTY_BUB "bub"
168371306c60Sjroman #define MP_PARTY_DEF "def"
1684014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *);
168571306c60Sjroman #define MP_PARTY_HELPFUL_SETS  "hs"
168671306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl"
168771306c60Sjroman #define MP_PARTY_NONE          "no"
1688014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *);
1689014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal);
1690014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool);
1691014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool);
169271306c60Sjroman 
16939371c9d4SSatish Balay typedef enum {
16949371c9d4SSatish Balay   MP_PTSCOTCH_DEFAULT,
16959371c9d4SSatish Balay   MP_PTSCOTCH_QUALITY,
16969371c9d4SSatish Balay   MP_PTSCOTCH_SPEED,
16979371c9d4SSatish Balay   MP_PTSCOTCH_BALANCE,
16989371c9d4SSatish Balay   MP_PTSCOTCH_SAFETY,
16999371c9d4SSatish Balay   MP_PTSCOTCH_SCALABILITY
17009371c9d4SSatish Balay } MPPTScotchStrategyType;
17016a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[];
1702e0f1cffaSJose Roman 
1703014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal);
1704014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *);
1705014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType);
1706014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *);
170771306c60Sjroman 
1708b43b03e9SMark F. Adams /*
17096294fa2bSFande Kong  * hierarchical partitioning
17106294fa2bSFande Kong  */
17114e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *);
17124e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *);
17134e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt);
17144e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt);
17156294fa2bSFande Kong 
1716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *);
1717591294e4SBarry Smith 
17180752156aSBarry Smith /*
1719c786d857SStefano Zampini     If you add entries here you must also add them to src/mat/f90-mod/petscmat.h
1720c786d857SStefano Zampini     If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx
1721d4fbbf0eSBarry Smith */
17229371c9d4SSatish Balay typedef enum {
17239371c9d4SSatish Balay   MATOP_SET_VALUES                = 0,
17241c1c02c0SLois Curfman McInnes   MATOP_GET_ROW                   = 1,
17251c1c02c0SLois Curfman McInnes   MATOP_RESTORE_ROW               = 2,
17261c1c02c0SLois Curfman McInnes   MATOP_MULT                      = 3,
17271c1c02c0SLois Curfman McInnes   MATOP_MULT_ADD                  = 4,
17287c922b88SBarry Smith   MATOP_MULT_TRANSPOSE            = 5,
17297c922b88SBarry Smith   MATOP_MULT_TRANSPOSE_ADD        = 6,
17301c1c02c0SLois Curfman McInnes   MATOP_SOLVE                     = 7,
17311c1c02c0SLois Curfman McInnes   MATOP_SOLVE_ADD                 = 8,
17327c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE           = 9,
17337c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE_ADD       = 10,
17341c1c02c0SLois Curfman McInnes   MATOP_LUFACTOR                  = 11,
17351c1c02c0SLois Curfman McInnes   MATOP_CHOLESKYFACTOR            = 12,
1736a714c06dSBarry Smith   MATOP_SOR                       = 13,
17371c1c02c0SLois Curfman McInnes   MATOP_TRANSPOSE                 = 14,
17381c1c02c0SLois Curfman McInnes   MATOP_GETINFO                   = 15,
17391c1c02c0SLois Curfman McInnes   MATOP_EQUAL                     = 16,
17401c1c02c0SLois Curfman McInnes   MATOP_GET_DIAGONAL              = 17,
17411c1c02c0SLois Curfman McInnes   MATOP_DIAGONAL_SCALE            = 18,
17421c1c02c0SLois Curfman McInnes   MATOP_NORM                      = 19,
17431c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_BEGIN            = 20,
17441c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_END              = 21,
1745d519adbfSMatthew Knepley   MATOP_SET_OPTION                = 22,
1746d519adbfSMatthew Knepley   MATOP_ZERO_ENTRIES              = 23,
1747d519adbfSMatthew Knepley   MATOP_ZERO_ROWS                 = 24,
1748d519adbfSMatthew Knepley   MATOP_LUFACTOR_SYMBOLIC         = 25,
1749d519adbfSMatthew Knepley   MATOP_LUFACTOR_NUMERIC          = 26,
1750d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_SYMBOLIC  = 27,
1751d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_NUMERIC   = 28,
1752e5f2d425SStefano Zampini   MATOP_SETUP                     = 29,
1753d519adbfSMatthew Knepley   MATOP_ILUFACTOR_SYMBOLIC        = 30,
1754d519adbfSMatthew Knepley   MATOP_ICCFACTOR_SYMBOLIC        = 31,
1755a5b7ff6bSBarry Smith   MATOP_GET_DIAGONAL_BLOCK        = 32,
1756e5f2d425SStefano Zampini   MATOP_SET_INF                   = 33,
1757d519adbfSMatthew Knepley   MATOP_DUPLICATE                 = 34,
1758d519adbfSMatthew Knepley   MATOP_FORWARD_SOLVE             = 35,
1759d519adbfSMatthew Knepley   MATOP_BACKWARD_SOLVE            = 36,
1760d519adbfSMatthew Knepley   MATOP_ILUFACTOR                 = 37,
1761d519adbfSMatthew Knepley   MATOP_ICCFACTOR                 = 38,
1762d519adbfSMatthew Knepley   MATOP_AXPY                      = 39,
17637dae84e0SHong Zhang   MATOP_CREATE_SUBMATRICES        = 40,
1764d519adbfSMatthew Knepley   MATOP_INCREASE_OVERLAP          = 41,
1765d519adbfSMatthew Knepley   MATOP_GET_VALUES                = 42,
1766d519adbfSMatthew Knepley   MATOP_COPY                      = 43,
1767d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX               = 44,
1768d519adbfSMatthew Knepley   MATOP_SCALE                     = 45,
1769d519adbfSMatthew Knepley   MATOP_SHIFT                     = 46,
177035153367SBarry Smith   MATOP_DIAGONAL_SET              = 47,
17719d39f69dSJed Brown   MATOP_ZERO_ROWS_COLUMNS         = 48,
17729d39f69dSJed Brown   MATOP_SET_RANDOM                = 49,
1773d519adbfSMatthew Knepley   MATOP_GET_ROW_IJ                = 50,
1774d519adbfSMatthew Knepley   MATOP_RESTORE_ROW_IJ            = 51,
1775d519adbfSMatthew Knepley   MATOP_GET_COLUMN_IJ             = 52,
1776d519adbfSMatthew Knepley   MATOP_RESTORE_COLUMN_IJ         = 53,
1777d519adbfSMatthew Knepley   MATOP_FDCOLORING_CREATE         = 54,
1778d519adbfSMatthew Knepley   MATOP_COLORING_PATCH            = 55,
1779d519adbfSMatthew Knepley   MATOP_SET_UNFACTORED            = 56,
1780d519adbfSMatthew Knepley   MATOP_PERMUTE                   = 57,
1781d519adbfSMatthew Knepley   MATOP_SET_VALUES_BLOCKED        = 58,
17827dae84e0SHong Zhang   MATOP_CREATE_SUBMATRIX          = 59,
1783d519adbfSMatthew Knepley   MATOP_DESTROY                   = 60,
1784d519adbfSMatthew Knepley   MATOP_VIEW                      = 61,
1785d519adbfSMatthew Knepley   MATOP_CONVERT_FROM              = 62,
1786e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_63=63 */
17877bab7c10SHong Zhang   MATOP_MATMAT_MULT_SYMBOLIC      = 64,
17887bab7c10SHong Zhang   MATOP_MATMAT_MULT_NUMERIC       = 65,
1789d519adbfSMatthew Knepley   MATOP_SET_LOCAL_TO_GLOBAL_MAP   = 66,
1790d519adbfSMatthew Knepley   MATOP_SET_VALUES_LOCAL          = 67,
1791d519adbfSMatthew Knepley   MATOP_ZERO_ROWS_LOCAL           = 68,
1792d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX_ABS           = 69,
1793d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN_ABS           = 70,
1794d519adbfSMatthew Knepley   MATOP_CONVERT                   = 71,
1795e5f2d425SStefano Zampini   MATOP_HAS_OPERATION             = 72,
17969d39f69dSJed Brown   /* MATOP_PLACEHOLDER_73=73, */
1797d519adbfSMatthew Knepley   MATOP_SET_VALUES_ADIFOR         = 74,
1798d519adbfSMatthew Knepley   MATOP_FD_COLORING_APPLY         = 75,
1799d519adbfSMatthew Knepley   MATOP_SET_FROM_OPTIONS          = 76,
1800e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_77=77, */
1801e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_78=78, */
18029d39f69dSJed Brown   MATOP_FIND_ZERO_DIAGONALS       = 79,
1803d519adbfSMatthew Knepley   MATOP_MULT_MULTIPLE             = 80,
1804d519adbfSMatthew Knepley   MATOP_SOLVE_MULTIPLE            = 81,
1805d519adbfSMatthew Knepley   MATOP_GET_INERTIA               = 82,
1806d519adbfSMatthew Knepley   MATOP_LOAD                      = 83,
1807d519adbfSMatthew Knepley   MATOP_IS_SYMMETRIC              = 84,
1808d519adbfSMatthew Knepley   MATOP_IS_HERMITIAN              = 85,
1809d519adbfSMatthew Knepley   MATOP_IS_STRUCTURALLY_SYMMETRIC = 86,
1810820469bcSHong Zhang   MATOP_SET_VALUES_BLOCKEDLOCAL   = 87,
1811b41ce5d5SBarry Smith   MATOP_CREATE_VECS               = 88,
1812e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_89=89, */
1813d519adbfSMatthew Knepley   MATOP_MAT_MULT_SYMBOLIC         = 90,
1814d519adbfSMatthew Knepley   MATOP_MAT_MULT_NUMERIC          = 91,
1815e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_92=92, */
1816d519adbfSMatthew Knepley   MATOP_PTAP_SYMBOLIC             = 93,
1817d519adbfSMatthew Knepley   MATOP_PTAP_NUMERIC              = 94,
1818e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_95=95, */
1819bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_SYMBO  = 96,
1820bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_NUMER  = 97,
1821e5f2d425SStefano Zampini   MATOP_BIND_TO_CPU               = 98,
18227a3c3d58SStefano Zampini   MATOP_PRODUCTSETFROMOPTIONS     = 99,
18237a3c3d58SStefano Zampini   MATOP_PRODUCTSYMBOLIC           = 100,
18247a3c3d58SStefano Zampini   MATOP_PRODUCTNUMERIC            = 101,
1825d519adbfSMatthew Knepley   MATOP_CONJUGATE                 = 102,
1826e5f2d425SStefano Zampini   MATOP_VIEW_NATIVE               = 103,
1827d519adbfSMatthew Knepley   MATOP_SET_VALUES_ROW            = 104,
1828d519adbfSMatthew Knepley   MATOP_REAL_PART                 = 105,
1829bda6c4cbSBarry Smith   MATOP_IMAGINARY_PART            = 106,
1830bda6c4cbSBarry Smith   MATOP_GET_ROW_UPPER_TRIANGULAR  = 107,
1831bda6c4cbSBarry Smith   MATOP_RESTORE_ROW_UPPER_TRIANG  = 108,
1832bda6c4cbSBarry Smith   MATOP_MAT_SOLVE                 = 109,
183329eadf9eSStefano Zampini   MATOP_MAT_SOLVE_TRANSPOSE       = 110,
1834d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN               = 111,
18350e8d04f7SBarry Smith   MATOP_GET_COLUMN_VECTOR         = 112,
1836d519adbfSMatthew Knepley   MATOP_MISSING_DIAGONAL          = 113,
18370e8d04f7SBarry Smith   MATOP_GET_SEQ_NONZERO_STRUCTUR  = 114,
183889c6957cSBarry Smith   MATOP_CREATE                    = 115,
183989c6957cSBarry Smith   MATOP_GET_GHOSTS                = 116,
18400e8d04f7SBarry Smith   MATOP_GET_LOCAL_SUB_MATRIX      = 117,
18410e8d04f7SBarry Smith   MATOP_RESTORE_LOCALSUB_MATRIX   = 118,
1842eeffb40dSHong Zhang   MATOP_MULT_DIAGONAL_BLOCK       = 119,
18430e8d04f7SBarry Smith   MATOP_HERMITIAN_TRANSPOSE       = 120,
18440e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANSPOSE  = 121,
18450e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANS_ADD  = 122,
18460e8d04f7SBarry Smith   MATOP_GET_MULTI_PROC_BLOCK      = 123,
18479d39f69dSJed Brown   MATOP_FIND_NONZERO_ROWS         = 124,
18480e8d04f7SBarry Smith   MATOP_GET_COLUMN_NORMS          = 125,
18499d39f69dSJed Brown   MATOP_INVERT_BLOCK_DIAGONAL     = 126,
1850e5f2d425SStefano Zampini   MATOP_INVERT_VBLOCK_DIAGONAL    = 127,
1851b41ce5d5SBarry Smith   MATOP_CREATE_SUB_MATRICES_MPI   = 128,
18522b8ad9a3SHong Zhang   MATOP_SET_VALUES_BATCH          = 129,
1853e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_130=130, */
18540e8d04f7SBarry Smith   MATOP_TRANSPOSE_MAT_MULT_SYMBO  = 131,
1855e9b602ebSSatish Balay   MATOP_TRANSPOSE_MAT_MULT_NUMER  = 132,
18560e8d04f7SBarry Smith   MATOP_TRANSPOSE_COLORING_CREAT  = 133,
18570e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_SPT  = 134,
18580e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_DEN  = 135,
1859e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_136=136, */
18600e8d04f7SBarry Smith   MATOP_RART_SYMBOLIC             = 137,
18610e8d04f7SBarry Smith   MATOP_RART_NUMERIC              = 138,
1862e09a3074SHong Zhang   MATOP_SET_BLOCK_SIZES           = 139,
1863f9426fe0SMark Adams   MATOP_AYPX                      = 140,
18641919a2e2SJed Brown   MATOP_RESIDUAL                  = 141,
18659c8f2541SHong Zhang   MATOP_FDCOLORING_SETUP          = 142,
1866e5f2d425SStefano Zampini   MATOP_FIND_OFFBLOCK_ENTRIES     = 143,
18672d033e1fSHong Zhang   MATOP_MPICONCATENATESEQ         = 144,
1868bb01b7b0SPatrick Sanan   MATOP_DESTROYSUBMATRICES        = 145,
1869e265f6d6SPatrick Sanan   MATOP_TRANSPOSE_SOLVE           = 146,
1870e265f6d6SPatrick Sanan   MATOP_GET_VALUES_LOCAL          = 147
1871fae171e0SBarry Smith } MatOperation;
18720c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void));
1873976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void));
1874976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *);
187594342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *);
18769371c9d4SSatish Balay PETSC_DEPRECATED_FUNCTION("Use MatProductClear() (since version 3.14)") static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A) {
18779371c9d4SSatish Balay   return MatProductClear(A);
18789371c9d4SSatish Balay }
1879014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void));
1880014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void));
1881014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *);
1882800f99ffSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *));
1883db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType);
1884f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
1885f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
18860c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat);
1887b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType);
1888b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *);
1889112a2221SBarry Smith 
189090ace30eSBarry Smith /*
189190ace30eSBarry Smith    Codes for matrices stored on disk. By default they are
189290ace30eSBarry Smith    stored in a universal format. By changing the format with
18936a9046bcSBarry Smith    PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will
189490ace30eSBarry Smith    be stored in a way natural for the matrix, for example dense matrices
189590ace30eSBarry Smith    would be stored as dense. Matrices stored this way may only be
1896f4403165SShri Abhyankar    read into matrices of the same type.
189790ace30eSBarry Smith */
189890ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1
189990ace30eSBarry Smith 
1900014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal);
190175d48cdbSStefano Zampini 
19028546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType);
190375d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
190475d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool);
1905f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool);
1906014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *);
19073b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *);
1908014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat);
1909e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
191025ef9dfeSBarry Smith PETSC_EXTERN                PETSC_DEPRECATED_FUNCTION("Use the MatConvert() interface (since version 3.10)") PetscErrorCode MatISGetMPIXAIJ(Mat, MatReuse, Mat *);
19111f4e1ec7SBarry Smith 
1912d9274352SBarry Smith /*S
1913d9274352SBarry Smith      MatNullSpace - Object that removes a null space from a vector, i.e.
1914cb6b9846SMatthew Knepley          orthogonalizes the vector to a subspace
1915d9274352SBarry Smith 
1916f7a9e4ceSBarry Smith    Level: advanced
1917d9274352SBarry Smith 
191887497f52SBarry Smith .seealso: `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()`
1919d9274352SBarry Smith S*/
192074637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace;
1921d9274352SBarry Smith 
1922014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *);
1923014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *);
1924014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *);
1925d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec);
1926014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *);
19275fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *);
19285fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace);
1929014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace);
1930014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace);
1931014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *);
1932014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *);
1933014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer);
1934014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **);
1935014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *);
193674637425SBarry Smith 
1937014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS);
1938014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal);
1939014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *);
19403f1d51d7SBarry Smith 
1941014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *);
1942014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *);
1943014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *);
1944c4f061fbSSatish Balay 
19450bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *);
19460bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *);
19470bacdadaSStefano Zampini 
19489371c9d4SSatish Balay PETSC_DEPRECATED_FUNCTION("Use MatComputeOperator() (since version 3.12)") static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B) {
19499371c9d4SSatish Balay   return MatComputeOperator(A, NULL, B);
19509371c9d4SSatish Balay }
19519371c9d4SSatish Balay PETSC_DEPRECATED_FUNCTION("Use MatComputeOperatorTranspose() (since version 3.12)") static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B) {
19529371c9d4SSatish Balay   return MatComputeOperatorTranspose(A, NULL, B);
19539371c9d4SSatish Balay }
1954b0a32e0cSBarry Smith 
195549bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *);
195649bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *);
1957a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **);
1958a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
1959a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **);
1960a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **);
1961a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **);
1962a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
1963a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **);
1964a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **);
1965dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat);
1966dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]);
1967dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]);
1968910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *);
196949bd79ccSDebojyoti Ghosh 
1970014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec);
197104f1ad80SBarry Smith 
1972014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
1973014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec);
1974014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *);
1975014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *));
1976014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec));
1977014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt);
1978014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat);
1979014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal);
1980014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt);
1981014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *);
1982014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]);
1983014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *);
1984014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *);
1985e884886fSBarry Smith 
19866370053bSBarry Smith /*S
19876370053bSBarry Smith     MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free
19886370053bSBarry Smith               Jacobian vector products
1989e884886fSBarry Smith 
199095452b02SPatrick Sanan     Notes:
199187497f52SBarry Smith     `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure
19926370053bSBarry Smith 
199387497f52SBarry Smith     MatMFFD*() methods actually take the Mat as their first argument. Not a `MatMFFD` data structure
19946370053bSBarry Smith 
19956370053bSBarry Smith     Level: developer
19966370053bSBarry Smith 
1997db781477SPatrick Sanan .seealso: `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`
19986370053bSBarry Smith S*/
1999e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD;
2000e884886fSBarry Smith 
200176bdecfbSBarry Smith /*J
2002e884886fSBarry Smith     MatMFFDType - algorithm used to compute the h used in computing matrix-vector products via differencing of the function
2003e884886fSBarry Smith 
2004e884886fSBarry Smith    Level: beginner
2005e884886fSBarry Smith 
2006db781477SPatrick Sanan .seealso: `MatMFFDSetType()`, `MatMFFDRegister()`
200776bdecfbSBarry Smith J*/
200819fd82e9SBarry Smith typedef const char *MatMFFDType;
2009e884886fSBarry Smith #define MATMFFD_DS "ds"
2010e884886fSBarry Smith #define MATMFFD_WP "wp"
2011e884886fSBarry Smith 
201219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType);
2013bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD));
2014e884886fSBarry Smith 
2015014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal);
2016014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool);
2017e884886fSBarry Smith 
201861ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType);
201961ab5df0SBarry Smith 
2020014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *);
2021014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *);
20227dbadf16SMatthew Knepley 
202353022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS
202453022affSStefano Zampini PETSC_EXTERN_TYPEDEF typedef PetscScalar (*MatH2OpusKernel)(PetscInt, PetscReal[], PetscReal[], void *);
202553022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernel, void *, PetscReal, PetscInt, PetscInt, Mat *);
202653022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *);
202753022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal);
202853022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat);
202953022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal);
203053022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool);
203153022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *);
203253022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *);
203353022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *);
2034300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar);
2035a0d2e7d8SStefano Zampini #endif
2036a0d2e7d8SStefano Zampini 
2037c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL
203898e73e17SPierre Jolivet PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatHtoolKernel)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *);
2039c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernel, void *, Mat *);
2040c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernel, void *);
204198e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *);
204298e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *);
204398e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool);
2044c7a4214aSPierre Jolivet /*E
204587497f52SBarry Smith      MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL`
2046c7a4214aSPierre Jolivet 
2047c7a4214aSPierre Jolivet    Level: beginner
2048c7a4214aSPierre Jolivet 
2049c7a4214aSPierre Jolivet     Values:
205087497f52SBarry Smith +   `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation
205187497f52SBarry Smith .   `MAT_HTOOL_COMPRESSOR_FULL_ACA` - full adaptive cross approximation
205287497f52SBarry Smith -   `MAT_HTOOL_COMPRESSOR_SVD` - singular value decomposition
2053c7a4214aSPierre Jolivet 
2054db781477SPatrick Sanan .seealso: `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType`
2055c7a4214aSPierre Jolivet E*/
20569371c9d4SSatish Balay typedef enum {
20579371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA,
20589371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_FULL_ACA,
20599371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SVD
20609371c9d4SSatish Balay } MatHtoolCompressorType;
206198e73e17SPierre Jolivet /*E
206287497f52SBarry Smith      MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL`
206398e73e17SPierre Jolivet 
206498e73e17SPierre Jolivet    Level: beginner
206598e73e17SPierre Jolivet 
206698e73e17SPierre Jolivet     Values:
206787497f52SBarry Smith +   `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default) - axis computed via principle component analysis, split uniformly
206887497f52SBarry Smith .   `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC` - axis computed via principle component analysis, split barycentrically
206987497f52SBarry Smith .   `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR` - axis along the largest extent of the bounding box, split uniformly
207087497f52SBarry Smith -   `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically
207198e73e17SPierre Jolivet 
207298e73e17SPierre Jolivet     Notes: higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types
207398e73e17SPierre Jolivet 
2074db781477SPatrick Sanan .seealso: `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType`
207598e73e17SPierre Jolivet E*/
20769371c9d4SSatish Balay typedef enum {
20779371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_REGULAR,
20789371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC,
20799371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR,
20809371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC
20819371c9d4SSatish Balay } MatHtoolClusteringType;
2082c7a4214aSPierre Jolivet #endif
2083c7a4214aSPierre Jolivet 
208497969023SHong Zhang #ifdef PETSC_HAVE_MUMPS
2085014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt);
2086bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *);
2087b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal);
2088bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *);
2089bc6112feSHong Zhang 
2090ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *);
2091ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *);
2092ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *);
2093ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *);
209489a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat);
20950e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat);
209697969023SHong Zhang #endif
209723a5497aSJed Brown 
2098b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO
2099d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt);
2100b500a6b7SJose David Bermeol #endif
2101b500a6b7SJose David Bermeol 
2102d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO
2103d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt);
2104d305a81bSVasiliy Kozyrev #endif
2105d305a81bSVasiliy Kozyrev 
2106d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU
2107014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal);
2108d954db57SHong Zhang #endif
2109d954db57SHong Zhang 
2110fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST
2111fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *);
2112fb785984SHong Zhang #endif
2113fb785984SHong Zhang 
2114575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK
2115542aee0fSPieter Ghysels /*E
211687497f52SBarry Smith     MatSTRUMPACKReordering - sparsity reducing ordering to be used in `STRUMPACK`
2117542aee0fSPieter Ghysels 
2118542aee0fSPieter Ghysels     Level: intermediate
2119542aee0fSPieter Ghysels E*/
21209371c9d4SSatish Balay typedef enum {
21219371c9d4SSatish Balay   MAT_STRUMPACK_NATURAL  = 0,
212234f43fa5SPieter Ghysels   MAT_STRUMPACK_METIS    = 1,
212334f43fa5SPieter Ghysels   MAT_STRUMPACK_PARMETIS = 2,
212434f43fa5SPieter Ghysels   MAT_STRUMPACK_SCOTCH   = 3,
212534f43fa5SPieter Ghysels   MAT_STRUMPACK_PTSCOTCH = 4,
21269371c9d4SSatish Balay   MAT_STRUMPACK_RCM      = 5
21279371c9d4SSatish Balay } MatSTRUMPACKReordering;
212834f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering);
2129575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool);
213034f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSRelTol(Mat, PetscReal);
21319371c9d4SSatish Balay PETSC_DEPRECATED_FUNCTION("Use MatSTRUMPACKSetHSSRelTol() (since version 3.9)") static inline PetscErrorCode MatSTRUMPACKSetHSSRelCompTol(Mat mat, PetscReal rtol) {
21329371c9d4SSatish Balay   return MatSTRUMPACKSetHSSRelTol(mat, rtol);
21339371c9d4SSatish Balay }
213434f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSAbsTol(Mat, PetscReal);
213534f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMinSepSize(Mat, PetscInt);
21369371c9d4SSatish Balay PETSC_DEPRECATED_FUNCTION("Use MatSTRUMPACKSetHSSMinSepSize() (since version 3.9)") static inline PetscErrorCode MatSTRUMPACKSetHSSMinSize(Mat mat, PetscInt hssminsize) {
21379371c9d4SSatish Balay   return MatSTRUMPACKSetHSSMinSepSize(mat, hssminsize);
21389371c9d4SSatish Balay }
213934f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMaxRank(Mat, PetscInt);
2140a36bf211SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSLeafSize(Mat, PetscInt);
2141575704cbSPieter Ghysels #endif
2142575704cbSPieter Ghysels 
2143b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool);
21442216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *);
21459371c9d4SSatish Balay PETSC_DEPRECATED_FUNCTION("Use MatBindToCPU (since v3.13)") static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg) {
21469371c9d4SSatish Balay   return MatBindToCPU(A, flg);
21479371c9d4SSatish Balay }
214865a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool);
2149e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *);
2150e7e92044SBarry Smith 
2151042217e8SBarry Smith typedef struct _n_SplitCSRMat *PetscSplitCSRDataStructure;
2152042217e8SBarry Smith PETSC_EXTERN PetscErrorCode    MatCUSPARSEGetDeviceMatWrite(Mat, PetscSplitCSRDataStructure *);
2153a587d139SMark 
2154a587d139SMark #ifdef PETSC_HAVE_KOKKOS_KERNELS
2155042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatKokkosGetDeviceMatWrite(Mat, PetscSplitCSRDataStructure *);
2156042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJKokkosSetDeviceMat(Mat, PetscSplitCSRDataStructure);
2157042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJKokkosGetDeviceMat(Mat, PetscSplitCSRDataStructure *);
2158a587d139SMark #endif
2159a587d139SMark 
2160aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA
21613f9c0db1SPaul Mullowney /*E
2162e057df02SPaul Mullowney     MatCUSPARSEStorageFormat - indicates the storage format for CUSPARSE (GPU)
21632692e278SPaul Mullowney     matrices.
2164e057df02SPaul Mullowney 
2165e057df02SPaul Mullowney     Not Collective
2166e057df02SPaul Mullowney 
216787497f52SBarry Smith +   `MAT_CUSPARSE_CSR` - Compressed Sparse Row
216887497f52SBarry Smith .   `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later).
216987497f52SBarry Smith -   `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later).
2170e057df02SPaul Mullowney 
2171e057df02SPaul Mullowney     Level: intermediate
2172e057df02SPaul Mullowney 
217387497f52SBarry Smith    Developer Note:
2174af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
2175e057df02SPaul Mullowney 
2176db781477SPatrick Sanan .seealso: `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation`
2177e057df02SPaul Mullowney E*/
2178e057df02SPaul Mullowney 
21799371c9d4SSatish Balay typedef enum {
21809371c9d4SSatish Balay   MAT_CUSPARSE_CSR,
21819371c9d4SSatish Balay   MAT_CUSPARSE_ELL,
21829371c9d4SSatish Balay   MAT_CUSPARSE_HYB
21839371c9d4SSatish Balay } MatCUSPARSEStorageFormat;
2184e057df02SPaul Mullowney 
2185e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */
2186e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[];
2187e057df02SPaul Mullowney 
21883f9c0db1SPaul Mullowney /*E
2189e057df02SPaul Mullowney     MatCUSPARSEFormatOperation - indicates the operation of CUSPARSE (GPU)
21902692e278SPaul Mullowney     matrices whose operation should use a particular storage format.
2191e057df02SPaul Mullowney 
2192e057df02SPaul Mullowney     Not Collective
2193e057df02SPaul Mullowney 
219487497f52SBarry Smith +   `MAT_CUSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel MatMult
219587497f52SBarry Smith .   `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel MatMult
219687497f52SBarry Smith .   `MAT_CUSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) MatMult
219787497f52SBarry Smith -   `MAT_CUSPARSE_ALL` - sets the storage format for all CUSPARSE (GPU) matrices
2198e057df02SPaul Mullowney 
2199e057df02SPaul Mullowney     Level: intermediate
2200e057df02SPaul Mullowney 
2201db781477SPatrick Sanan .seealso: `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat`
2202e057df02SPaul Mullowney E*/
22039371c9d4SSatish Balay typedef enum {
22049371c9d4SSatish Balay   MAT_CUSPARSE_MULT_DIAG,
22059371c9d4SSatish Balay   MAT_CUSPARSE_MULT_OFFDIAG,
22069371c9d4SSatish Balay   MAT_CUSPARSE_MULT,
22079371c9d4SSatish Balay   MAT_CUSPARSE_ALL
22089371c9d4SSatish Balay } MatCUSPARSEFormatOperation;
2209e057df02SPaul Mullowney 
221010e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode                  MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
221110e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode                  MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2212e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode                  MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat);
2213365b711fSMark Adams PETSC_EXTERN PetscErrorCode                  MatCUSPARSESetUseCPUSolve(Mat, PetscBool);
2214e8d2b73aSMark Adams typedef struct Mat_SeqAIJCUSPARSETriFactors *Mat_SeqAIJCUSPARSETriFactors_p;
22155f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode                  MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
22165f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode                  MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
22175f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode                  MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **);
22185f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode                  MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **);
22195f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode                  MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **);
22205f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode                  MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **);
22215f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode                  MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **);
22225f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode                  MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **);
2223637a0070SStefano Zampini 
2224637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
2225637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
2226637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat, PetscScalar[]);
2227637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqDenseCUDASetPreallocation(Mat, PetscScalar[]);
2228637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **);
2229637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **);
2230637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **);
2231637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **);
2232637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **);
2233637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **);
2234637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *);
2235d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *);
2236637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat);
22373fa6b06aSMark Adams 
22389ae82921SPaul Mullowney #endif
22399ae82921SPaul Mullowney 
2240d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL)
2241d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2242d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2243d67ff14aSKarl Rupp #endif
2244d67ff14aSKarl Rupp 
224554efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW)
2246014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec);
2247014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec);
22482a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *);
224954efbe56SHong Zhang #endif
225054efbe56SHong Zhang 
2251d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
2252d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2253d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt);
2254d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *);
2255d24d4204SJose E. Roman #endif
2256d24d4204SJose E. Roman 
2257014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *);
2258014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *);
2259014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]);
2260014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]);
2261014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***);
2262014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *);
226319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType);
2264014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]);
2265014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat);
2266d8588912SDave May 
22674325cce7SMatthew G Knepley PETSC_EXTERN PetscErrorCode MatChop(Mat, PetscReal);
2268e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *);
22694325cce7SMatthew G Knepley 
2270b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **);
227153dd7562SDmitry Karpeev 
2272c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat);
2273c094ef40SMatthew G. Knepley 
2274539c167fSBarry Smith PETSC_INTERN PetscErrorCode MatHeaderMerge(Mat, Mat *);
2275539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *);
22761a2c6b5cSJunchao Zhang 
22777ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *);
227872833a62Smarkadams4 
227972833a62Smarkadams4 PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, Mat *);
228072833a62Smarkadams4 PETSC_EXTERN PetscErrorCode MatFilter(Mat, PetscReal, Mat *);
228172833a62Smarkadams4 
228223a5497aSJed Brown #endif
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