xref: /petsc/include/petscmat.h (revision 07e43b41f7cb79bba1664e5473a3e2df04f149fa)
12eac72dbSBarry Smith /*
22eac72dbSBarry Smith      Include file for the matrix component of PETSc
32eac72dbSBarry Smith */
426bd1501SBarry Smith #ifndef PETSCMAT_H
526bd1501SBarry Smith #define PETSCMAT_H
6ac09b921SBarry Smith 
72c8e378dSBarry Smith #include <petscvec.h>
82eac72dbSBarry Smith 
9ac09b921SBarry Smith /* SUBMANSEC = Mat */
10ac09b921SBarry Smith 
11d9274352SBarry Smith /*S
128f6c3df8SBarry Smith      Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without
138f6c3df8SBarry Smith            an explicit sparse representation (such as matrix-free operators)
142eac72dbSBarry Smith 
15d91e6319SBarry Smith    Level: beginner
16d91e6319SBarry Smith 
172ef1f0ffSBarry Smith    Note:
182ef1f0ffSBarry Smith    See [](doc_matrix) and `MatType` for available matrix types
192ef1f0ffSBarry Smith 
202ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](doc_matrix), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()`
21d9274352SBarry Smith S*/
22d9274352SBarry Smith typedef struct _p_Mat *Mat;
23d9274352SBarry Smith 
2476bdecfbSBarry Smith /*J
258f6c3df8SBarry Smith     MatType - String with the name of a PETSc matrix type
26d9274352SBarry Smith 
27d9274352SBarry Smith    Level: beginner
28d9274352SBarry Smith 
292ef1f0ffSBarry Smith    Note:
302ef1f0ffSBarry Smith    [](doc_matrix) for a table of available matrix types
312ef1f0ffSBarry Smith 
322ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()`
3376bdecfbSBarry Smith J*/
3419fd82e9SBarry Smith typedef const char *MatType;
35273d9f13SBarry Smith #define MATSAME                      "same"
365a11e1b2SBarry Smith #define MATMAIJ                      "maij"
37273d9f13SBarry Smith #define MATSEQMAIJ                   "seqmaij"
38273d9f13SBarry Smith #define MATMPIMAIJ                   "mpimaij"
3949bd79ccSDebojyoti Ghosh #define MATKAIJ                      "kaij"
4049bd79ccSDebojyoti Ghosh #define MATSEQKAIJ                   "seqkaij"
4149bd79ccSDebojyoti Ghosh #define MATMPIKAIJ                   "mpikaij"
42273d9f13SBarry Smith #define MATIS                        "is"
435a11e1b2SBarry Smith #define MATAIJ                       "aij"
44273d9f13SBarry Smith #define MATSEQAIJ                    "seqaij"
45273d9f13SBarry Smith #define MATMPIAIJ                    "mpiaij"
465a11e1b2SBarry Smith #define MATAIJCRL                    "aijcrl"
475a11e1b2SBarry Smith #define MATSEQAIJCRL                 "seqaijcrl"
485a11e1b2SBarry Smith #define MATMPIAIJCRL                 "mpiaijcrl"
499ae82921SPaul Mullowney #define MATAIJCUSPARSE               "aijcusparse"
509ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE            "seqaijcusparse"
519ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE            "mpiaijcusparse"
5247d993e7Ssuyashtn #define MATAIJHIPSPARSE              "aijhipsparse"
5347d993e7Ssuyashtn #define MATSEQAIJHIPSPARSE           "seqaijhipsparse"
5447d993e7Ssuyashtn #define MATMPIAIJHIPSPARSE           "mpiaijhipsparse"
558c3ff71bSJunchao Zhang #define MATAIJKOKKOS                 "aijkokkos"
568c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS              "seqaijkokkos"
578c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS              "mpiaijkokkos"
58d67ff14aSKarl Rupp #define MATAIJVIENNACL               "aijviennacl"
59d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL            "seqaijviennacl"
60d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL            "mpiaijviennacl"
615a11e1b2SBarry Smith #define MATAIJPERM                   "aijperm"
625a11e1b2SBarry Smith #define MATSEQAIJPERM                "seqaijperm"
635a11e1b2SBarry Smith #define MATMPIAIJPERM                "mpiaijperm"
644dfdc2d9SRichard Tran Mills #define MATAIJSELL                   "aijsell"
654dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL                "seqaijsell"
664dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL                "mpiaijsell"
674a2a386eSRichard Tran Mills #define MATAIJMKL                    "aijmkl"
684a2a386eSRichard Tran Mills #define MATSEQAIJMKL                 "seqaijmkl"
694a2a386eSRichard Tran Mills #define MATMPIAIJMKL                 "mpiaijmkl"
70b5b72c8aSIrina Sokolova #define MATBAIJMKL                   "baijmkl"
71b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL                "seqbaijmkl"
72b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL                "mpibaijmkl"
73273d9f13SBarry Smith #define MATSHELL                     "shell"
74c1fff1c6SRichard Tran Mills #define MATCENTERING                 "centering"
755a11e1b2SBarry Smith #define MATDENSE                     "dense"
76637a0070SStefano Zampini #define MATDENSECUDA                 "densecuda"
7747d993e7Ssuyashtn #define MATDENSEHIP                  "densehip"
78209238afSKris Buschelman #define MATSEQDENSE                  "seqdense"
79bfc799aaSStefano Zampini #define MATSEQDENSECUDA              "seqdensecuda"
8047d993e7Ssuyashtn #define MATSEQDENSEHIP               "seqdensehip"
81273d9f13SBarry Smith #define MATMPIDENSE                  "mpidense"
82637a0070SStefano Zampini #define MATMPIDENSECUDA              "mpidensecuda"
8347d993e7Ssuyashtn #define MATMPIDENSEHIP               "mpidensehip"
84db31f6deSJed Brown #define MATELEMENTAL                 "elemental"
85d24d4204SJose E. Roman #define MATSCALAPACK                 "scalapack"
865a11e1b2SBarry Smith #define MATBAIJ                      "baij"
87273d9f13SBarry Smith #define MATSEQBAIJ                   "seqbaij"
88273d9f13SBarry Smith #define MATMPIBAIJ                   "mpibaij"
89273d9f13SBarry Smith #define MATMPIADJ                    "mpiadj"
905a11e1b2SBarry Smith #define MATSBAIJ                     "sbaij"
91273d9f13SBarry Smith #define MATSEQSBAIJ                  "seqsbaij"
92273d9f13SBarry Smith #define MATMPISBAIJ                  "mpisbaij"
93cebc7f6cSBarry Smith #define MATMFFD                      "mffd"
94c8a8475eSBarry Smith #define MATNORMAL                    "normal"
95c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN           "normalh"
96ab92ecdeSBarry Smith #define MATLRC                       "lrc"
972a6744ebSBarry Smith #define MATSCATTER                   "scatter"
98421e10b8SBarry Smith #define MATBLOCKMAT                  "blockmat"
99793850ffSBarry Smith #define MATCOMPOSITE                 "composite"
1001f8c7532SHong Zhang #define MATFFT                       "fft"
1011f8c7532SHong Zhang #define MATFFTW                      "fftw"
102e133240eSMatthew G Knepley #define MATSEQCUFFT                  "seqcufft"
10347d993e7Ssuyashtn #define MATSEQHIPFFT                 "seqhipfft"
104013e2dc7SBarry Smith #define MATTRANSPOSEMAT              PETSC_DEPRECATED_MACRO("GCC warning \"MATTRANSPOSEMAT macro is deprecated use MATTRANSPOSEVIRTUAL (since version 3.18)\"") "transpose"
105013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL          "transpose"
106013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose"
10772ca8751SBarry Smith #define MATSCHURCOMPLEMENT           "schurcomplement"
1081d6018f0SLisandro Dalcin #define MATPYTHON                    "python"
10963c07aadSStefano Zampini #define MATHYPRE                     "hypre"
110f91d8e95SBarry Smith #define MATHYPRESTRUCT               "hyprestruct"
111a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT              "hypresstruct"
112ee1cef2cSJed Brown #define MATSUBMATRIX                 "submatrix"
1132c0dbf93SJed Brown #define MATLOCALREF                  "localref"
114d8588912SDave May #define MATNEST                      "nest"
115c094ef40SMatthew G. Knepley #define MATPREALLOCATOR              "preallocator"
116d4002b98SHong Zhang #define MATSELL                      "sell"
117d4002b98SHong Zhang #define MATSEQSELL                   "seqsell"
118d4002b98SHong Zhang #define MATMPISELL                   "mpisell"
1192d1451d4SHong Zhang #define MATSELLCUDA                  "sellcuda"
1202d1451d4SHong Zhang #define MATSEQSELLCUDA               "seqsellcuda"
1212d1451d4SHong Zhang #define MATMPISELLCUDA               "mpisellcuda"
122a3b2e22bSHong Zhang #define MATDUMMY                     "dummy"
123cd929ea3SAlp Dener #define MATLMVM                      "lmvm"
12478e4361aSAlp Dener #define MATLMVMDFP                   "lmvmdfp"
12578e4361aSAlp Dener #define MATLMVMBFGS                  "lmvmbfgs"
12678e4361aSAlp Dener #define MATLMVMSR1                   "lmvmsr1"
127864588a7SAlp Dener #define MATLMVMBROYDEN               "lmvmbroyden"
128864588a7SAlp Dener #define MATLMVMBADBROYDEN            "lmvmbadbroyden"
129864588a7SAlp Dener #define MATLMVMSYMBROYDEN            "lmvmsymbroyden"
130864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN         "lmvmsymbadbroyden"
131864588a7SAlp Dener #define MATLMVMDIAGBROYDEN           "lmvmdiagbroyden"
1323423f386SBarry Smith #define MATCONSTANTDIAGONAL          "constantdiagonal"
133c7a4214aSPierre Jolivet #define MATHTOOL                     "htool"
13453022affSStefano Zampini #define MATH2OPUS                    "h2opus"
135773941d6SBarry Smith 
13676bdecfbSBarry Smith /*J
1373ca39a21SBarry Smith     MatSolverType - String with the name of a PETSc matrix solver type.
1389989ab13SBarry Smith 
139c2b89b5dSBarry Smith     For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc
1409989ab13SBarry Smith 
1419989ab13SBarry Smith    Level: beginner
1429989ab13SBarry Smith 
1432ef1f0ffSBarry Smith    Note:
1442ef1f0ffSBarry Smith    `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package for which you can use --download-suitesparse
145c7ccbb75SBarry Smith 
1462ef1f0ffSBarry Smith .seealso: [](sec_matfactor), [](chapter_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()`
14776bdecfbSBarry Smith J*/
148ea799195SBarry Smith typedef const char *MatSolverType;
1492692d6eeSBarry Smith #define MATSOLVERSUPERLU       "superlu"
1502692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST  "superlu_dist"
15108f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK     "strumpack"
1522692d6eeSBarry Smith #define MATSOLVERUMFPACK       "umfpack"
15320db9a53SJed Brown #define MATSOLVERCHOLMOD       "cholmod"
154d89f5e7aSBarry Smith #define MATSOLVERKLU           "klu"
155d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL     "elemental"
156d24d4204SJose E. Roman #define MATSOLVERSCALAPACK     "scalapack"
1572692d6eeSBarry Smith #define MATSOLVERESSL          "essl"
1582692d6eeSBarry Smith #define MATSOLVERLUSOL         "lusol"
1592692d6eeSBarry Smith #define MATSOLVERMUMPS         "mumps"
160d615f992SSatish Balay #define MATSOLVERMKL_PARDISO   "mkl_pardiso"
161d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO  "mkl_cpardiso"
1622692d6eeSBarry Smith #define MATSOLVERPASTIX        "pastix"
1632692d6eeSBarry Smith #define MATSOLVERMATLAB        "matlab"
1642692d6eeSBarry Smith #define MATSOLVERPETSC         "petsc"
1652692d6eeSBarry Smith #define MATSOLVERBAS           "bas"
1669ae82921SPaul Mullowney #define MATSOLVERCUSPARSE      "cusparse"
167bddcd29dSMark Adams #define MATSOLVERCUSPARSEBAND  "cusparseband"
168bfc799aaSStefano Zampini #define MATSOLVERCUDA          "cuda"
16947d993e7Ssuyashtn #define MATSOLVERHIPSPARSE     "hipsparse"
17047d993e7Ssuyashtn #define MATSOLVERHIPSPARSEBAND "hipsparseband"
17147d993e7Ssuyashtn #define MATSOLVERHIP           "hip"
172930e68a5SMark Adams #define MATSOLVERKOKKOS        "kokkos"
1738f7e8f9dSMark Adams #define MATSOLVERKOKKOSDEVICE  "kokkosdevice"
174a2fc1e05SToby Isaac #define MATSOLVERSPQR          "spqr"
175c0cdd4a1SDahai Guo 
176b24902e0SBarry Smith /*E
177b24902e0SBarry Smith     MatFactorType - indicates what type of factorization is requested
178b24902e0SBarry Smith 
179b24902e0SBarry Smith     Level: beginner
180b24902e0SBarry Smith 
1812ef1f0ffSBarry Smith     Values:
1822ef1f0ffSBarry Smith +  `MAT_FACTOR_LU` - LU factorization
1832ef1f0ffSBarry Smith .  `MAT_FACTOR_CHOLESKY` - Cholesky factorization
1842ef1f0ffSBarry Smith .  `MAT_FACTOR_ILU` - ILU factorization
1852ef1f0ffSBarry Smith .  `MAT_FACTOR_ICC` - incomplete Cholesky factorization
1862ef1f0ffSBarry Smith .  `MAT_FACTOR_ILUDT` - ILU factorization with drop tolerance
1872ef1f0ffSBarry Smith -  `MAT_FACTOR_QR` - QR factorization
188b24902e0SBarry Smith 
1892ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()`
190b24902e0SBarry Smith E*/
1919371c9d4SSatish Balay typedef enum {
1929371c9d4SSatish Balay   MAT_FACTOR_NONE,
1939371c9d4SSatish Balay   MAT_FACTOR_LU,
1949371c9d4SSatish Balay   MAT_FACTOR_CHOLESKY,
1959371c9d4SSatish Balay   MAT_FACTOR_ILU,
1969371c9d4SSatish Balay   MAT_FACTOR_ICC,
1979371c9d4SSatish Balay   MAT_FACTOR_ILUDT,
1989371c9d4SSatish Balay   MAT_FACTOR_QR,
1999371c9d4SSatish Balay   MAT_FACTOR_NUM_TYPES
2009371c9d4SSatish Balay } MatFactorType;
201014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[];
202e92e720dSBarry Smith 
203ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *);
204ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *);
205f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *);
206d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatFactorGetCanUseOrdering() (since version 3.15)") static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b)
207d71ae5a4SJacob Faibussowitsch {
2089371c9d4SSatish Balay   return MatFactorGetCanUseOrdering(A, b);
2099371c9d4SSatish Balay }
210ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *);
211014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *);
2127abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType);
2132430ea28SJose E. Roman PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatSolverFunction)(Mat, MatFactorType, Mat *);
2142430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode            MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFunction);
2152430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode            MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFunction *);
21625ef9dfeSBarry Smith typedef MatSolverType MatSolverPackage PETSC_DEPRECATED_TYPEDEF("Use MatSolverType (since version 3.9)");
217d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSolverTypeRegister() (since version 3.9)") static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFunction f)
218d71ae5a4SJacob Faibussowitsch {
2199371c9d4SSatish Balay   return MatSolverTypeRegister(stype, mtype, ftype, f);
2209371c9d4SSatish Balay }
221d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSolverTypeGet() (since version 3.9)") static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFunction *f)
222d71ae5a4SJacob Faibussowitsch {
2239371c9d4SSatish Balay   return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f);
2249371c9d4SSatish Balay }
2259989ab13SBarry Smith 
2264222ddf1SHong Zhang /*E
2274222ddf1SHong Zhang     MatProductType - indicates what type of matrix product is requested
2284222ddf1SHong Zhang 
2294222ddf1SHong Zhang     Level: beginner
2304222ddf1SHong Zhang 
2312ef1f0ffSBarry Smith     Values:
2322ef1f0ffSBarry Smith +  `MATPRODUCT_AB` - product of two matrices
2332ef1f0ffSBarry Smith .  `MATPRODUCT_AtB` - product of the transpose of a given matrix with a matrix
2342ef1f0ffSBarry Smith .  `MATPRODUCT_ABt` - product of a matrix with the transpose of another given matrix
2352ef1f0ffSBarry Smith .  `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself
2362ef1f0ffSBarry Smith .  `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix
2372ef1f0ffSBarry Smith -  `MATPRODUCT_ABC` - the product of three matrices
2382ef1f0ffSBarry Smith 
2392ef1f0ffSBarry Smith .seealso: [](sec_matmatproduct), [](chapter_matrices), `MatProductSetType()`
2404222ddf1SHong Zhang E*/
2419371c9d4SSatish Balay typedef enum {
2429371c9d4SSatish Balay   MATPRODUCT_UNSPECIFIED = 0,
2439371c9d4SSatish Balay   MATPRODUCT_AB,
2449371c9d4SSatish Balay   MATPRODUCT_AtB,
2459371c9d4SSatish Balay   MATPRODUCT_ABt,
2469371c9d4SSatish Balay   MATPRODUCT_PtAP,
2479371c9d4SSatish Balay   MATPRODUCT_RARt,
2489371c9d4SSatish Balay   MATPRODUCT_ABC
2499371c9d4SSatish Balay } MatProductType;
250544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[];
2514222ddf1SHong Zhang 
2524222ddf1SHong Zhang /*J
2534222ddf1SHong Zhang     MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation
2544222ddf1SHong Zhang 
2554222ddf1SHong Zhang    Level: beginner
2564222ddf1SHong Zhang 
2572ef1f0ffSBarry Smith .seealso: [](sec_matmatproduct), [](chapter_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType`
2584222ddf1SHong Zhang J*/
2594222ddf1SHong Zhang typedef const char *MatProductAlgorithm;
2603e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT         "default"
2613e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED          "sorted"
2623e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE        "scalable"
2633e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST    "scalable_fast"
2643e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP            "heap"
2653e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP           "btheap"
2663e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED     "llcondensed"
2673e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE        "rowmerge"
2683e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT    "outerproduct"
2693e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB             "at*b"
2703e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP             "rap"
2713e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE     "nonscalable"
2723e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI          "seqmpi"
2733e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND         "backend"
2743e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING     "overlapping"
2753e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED          "merged"
2763e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE       "allatonce"
2773e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged"
2783e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV      "allgatherv"
2793e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC          "cyclic"
2803e662e0bSHong Zhang #if defined(PETSC_HAVE_HYPRE)
2813e662e0bSHong Zhang   #define MATPRODUCTALGORITHMHYPRE "hypre"
2823e662e0bSHong Zhang #endif
2834222ddf1SHong Zhang 
2844222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *);
2854222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat);
2864222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType);
2874222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm);
2884222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal);
2894222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat);
2904222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat);
2914222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat);
2924222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat);
2934417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat);
2946718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer);
295c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *);
296c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *);
2974222ddf1SHong Zhang 
298c06d978dSMatthew Knepley /* Logging support */
2990700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */
300014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID;
301335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID;
302014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID;
303014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID;
304014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID;
305014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID;
306014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID;
307014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID;
308c06d978dSMatthew Knepley 
309ceb03754SKris Buschelman /*E
3102ef1f0ffSBarry Smith     MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions
311cf37664fSBarry Smith      are to be reused to store the new matrix values.
312cf37664fSBarry Smith 
3132ef1f0ffSBarry Smith    Values:
3142ef1f0ffSBarry Smith +  `MAT_INITIAL_MATRIX` - create a new matrix
3152ef1f0ffSBarry Smith .  `MAT_REUSE_MATRIX` - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX`
3162ef1f0ffSBarry Smith .  `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions)
3172ef1f0ffSBarry Smith -  `MAT_IGNORE_MATRIX` - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions)
318ceb03754SKris Buschelman 
319ceb03754SKris Buschelman     Level: beginner
320ceb03754SKris Buschelman 
3212ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()`
322ceb03754SKris Buschelman E*/
3239371c9d4SSatish Balay typedef enum {
3249371c9d4SSatish Balay   MAT_INITIAL_MATRIX,
3259371c9d4SSatish Balay   MAT_REUSE_MATRIX,
3269371c9d4SSatish Balay   MAT_IGNORE_MATRIX,
3279371c9d4SSatish Balay   MAT_INPLACE_MATRIX
3289371c9d4SSatish Balay } MatReuse;
329ceb03754SKris Buschelman 
3305494a064SHong Zhang /*E
3312ef1f0ffSBarry Smith     MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()`
3322ef1f0ffSBarry Smith      include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`.
3335494a064SHong Zhang 
3342ef1f0ffSBarry Smith     Level: developer
3355494a064SHong Zhang 
3362ef1f0ffSBarry Smith     Values:
3372ef1f0ffSBarry Smith +  `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values
3382ef1f0ffSBarry Smith -  `MAT_GET_VALUES` - copy the matrix values
3392ef1f0ffSBarry Smith 
3402ef1f0ffSBarry Smith     Developer Note:
3412ef1f0ffSBarry Smith     Why is not just a boolean used for this information?
3422ef1f0ffSBarry Smith 
3432ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()`
3445494a064SHong Zhang E*/
3459371c9d4SSatish Balay typedef enum {
3469371c9d4SSatish Balay   MAT_DO_NOT_GET_VALUES,
3479371c9d4SSatish Balay   MAT_GET_VALUES
3489371c9d4SSatish Balay } MatCreateSubMatrixOption;
3495494a064SHong Zhang 
350607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void);
351c06d978dSMatthew Knepley 
352014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *);
353014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt);
35419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType);
3550d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *);
3560d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType);
357014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat);
358fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]);
359bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat));
36023bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]);
361014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]);
36226cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]);
36326cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]);
364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]);
365014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]);
36684d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool);
367f69a0ea3SMatthew Knepley 
368140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList;
369140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList;
370140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList;
37128988994SBarry Smith 
3723b224e63SBarry Smith /*E
373aa6c7ce3SBarry Smith     MatStructure - Indicates if two matrices have the same nonzero structure
3743b224e63SBarry Smith 
3753b224e63SBarry Smith     Level: beginner
3763b224e63SBarry Smith 
3772ef1f0ffSBarry Smith    Values:
3782ef1f0ffSBarry Smith +  `SAME_NONZERO_PATTERN`  - the two matrices have identical nonzero patterns
3792ef1f0ffSBarry Smith .  `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns
3802ef1f0ffSBarry Smith .  `SUBSET_NONZERO_PATTERN` - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix
3812ef1f0ffSBarry Smith -  `UNKNOWN_NONZERO_PATTERN` - there is no known relationship between the nonzero patterns. In this case the implementations
3822ef1f0ffSBarry Smith                                may try to detect a relationship to optimize the operation
383531d0c6aSBarry Smith 
3842ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()`
3853b224e63SBarry Smith E*/
3869371c9d4SSatish Balay typedef enum {
3879371c9d4SSatish Balay   DIFFERENT_NONZERO_PATTERN,
3889371c9d4SSatish Balay   SUBSET_NONZERO_PATTERN,
3899371c9d4SSatish Balay   SAME_NONZERO_PATTERN,
3909371c9d4SSatish Balay   UNKNOWN_NONZERO_PATTERN
3919371c9d4SSatish Balay } MatStructure;
392d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[];
3933b224e63SBarry Smith 
3949779e05dSSatish Balay #if defined                 PETSC_HAVE_MKL_SPARSE
395ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
396ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
39780095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
398ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
39980095d54SIrina Sokolova #endif
400cd929ea3SAlp Dener 
401d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
402d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
403d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]);
404d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
405*07e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *);
406*07e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *);
407*07e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *);
408*07e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt);
40980095d54SIrina Sokolova 
410014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
411014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
412014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
413014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
414014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4158f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4166a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]);
417014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *);
4183b00a383SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *);
4193b00a383SHong Zhang 
420014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
421014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
422014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4237e8381f9SStefano Zampini 
424e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]);
42582a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]);
4267e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode);
427d21a29f3SJed Brown 
428014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *);
429014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
430d21a29f3SJed Brown 
431014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
432014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
43338f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
434014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4354cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]);
436dfb205c3SBarry Smith 
437014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *);
438c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *);
439014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *);
440c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *);
441986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *);
442267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *);
443c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *);
444014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
445014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
446c0cdd4a1SDahai Guo 
447014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *);
448014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter);
449014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *);
450014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *);
451014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat);
452014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat);
4539371c9d4SSatish Balay typedef enum {
4549371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_RIGHT,
4559371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_LEFT
4569371c9d4SSatish Balay } MatCompositeMergeType;
4578c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType);
458014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *);
4599371c9d4SSatish Balay typedef enum {
4609371c9d4SSatish Balay   MAT_COMPOSITE_ADDITIVE,
4619371c9d4SSatish Balay   MAT_COMPOSITE_MULTIPLICATIVE
4629371c9d4SSatish Balay } MatCompositeType;
463014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType);
4646dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *);
4653b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure);
4663b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *);
4676d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *);
4688b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *);
46903049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *);
4706d7c1e57SBarry Smith 
47119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *);
472014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *);
473dedccee8SHong Zhang 
474014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *);
4758060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *);
476d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *);
47706511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *);
478fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *);
47965f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *);
48054e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *);
48154e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS);
482014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *);
4833423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *);
4841472f72bSBarry Smith 
485978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE)
486d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
487978814f1SStefano Zampini #endif
488978814f1SStefano Zampini 
489014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]);
490ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]);
4911d6018f0SLisandro Dalcin 
492846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat);
493014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat);
494014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *);
495e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *);
49621c89e3eSBarry Smith 
497014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat);
498014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat);
499014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat);
500014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *);
501014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *);
502713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **);
5030da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *);
504479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat);
5058a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *);
50699cafbc1SBarry Smith 
5078ed539a5SBarry Smith /* ------------------------------------------------------------*/
508014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
5098a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode);
510014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
511014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]);
512014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]);
513014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]);
51473a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom);
51584cb2905SBarry Smith 
5162ef4de8bSBarry Smith /*S
5172ef1f0ffSBarry Smith      MatStencil - Data structure (C struct) for storing information about rows and
5182ef1f0ffSBarry Smith         columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()`
51962ef0227SBarry Smith 
5202ef1f0ffSBarry Smith    Level: beginner
5212ef1f0ffSBarry Smith 
5222ef1f0ffSBarry Smith    Notes:
52362ef0227SBarry Smith    The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored).
52487497f52SBarry Smith    The c represents the the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored.
52562ef0227SBarry Smith 
52687497f52SBarry Smith    For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`.
527be479b30SJed Brown 
5282ef1f0ffSBarry Smith    For staggered grids, see `DMStagStencil`
5292ef4de8bSBarry Smith 
5302ef1f0ffSBarry Smith    Fortran Note:
5312ef1f0ffSBarry Smith    See `MatSetValuesStencil()` for details.
5322ef4de8bSBarry Smith 
5332ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`,
5342ef1f0ffSBarry Smith           `DMStagStencil`
5352ef4de8bSBarry Smith S*/
536435da068SBarry Smith typedef struct {
537c1ac3661SBarry Smith   PetscInt k, j, i, c;
538435da068SBarry Smith } MatStencil;
5392ef4de8bSBarry Smith 
540014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
541014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
542014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt);
543435da068SBarry Smith 
544d91e6319SBarry Smith /*E
5452ef1f0ffSBarry Smith     MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use
546d91e6319SBarry Smith 
547d91e6319SBarry Smith     Level: beginner
548d91e6319SBarry Smith 
5492ef1f0ffSBarry Smith     Values:
5502ef1f0ffSBarry Smith +   `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix
5512ef1f0ffSBarry Smith -   `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted
5522ef1f0ffSBarry Smith 
5532ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()`
554d91e6319SBarry Smith E*/
5559371c9d4SSatish Balay typedef enum {
5569371c9d4SSatish Balay   MAT_FLUSH_ASSEMBLY = 1,
5579371c9d4SSatish Balay   MAT_FINAL_ASSEMBLY = 0
5589371c9d4SSatish Balay } MatAssemblyType;
559014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType);
560014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType);
561014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *);
5624f9c727eSBarry Smith 
563d91e6319SBarry Smith /*E
5642ef1f0ffSBarry Smith     MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage
565d91e6319SBarry Smith 
566d91e6319SBarry Smith     Level: beginner
567d91e6319SBarry Smith 
5682ef1f0ffSBarry Smith    Note:
5692ef1f0ffSBarry Smith    See `MatSetOption()` for the use of the options
5702ef1f0ffSBarry Smith 
5712ef1f0ffSBarry Smith    Developer Note:
57295452b02SPatrick Sanan    Entries that are negative need not be called collectively by all processes.
573382164b0SBarry Smith 
5742ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatSetOption()`
575d91e6319SBarry Smith E*/
5769371c9d4SSatish Balay typedef enum {
5779371c9d4SSatish Balay   MAT_OPTION_MIN                  = -3,
578c5e4d11fSDmitry Karpeev   MAT_UNUSED_NONZERO_LOCATION_ERR = -2,
57992d4d306SBarry Smith   MAT_ROW_ORIENTED                = -1,
580382164b0SBarry Smith   MAT_SYMMETRIC                   = 1,
581382164b0SBarry Smith   MAT_STRUCTURALLY_SYMMETRIC      = 2,
5828c78258cSHong Zhang   MAT_FORCE_DIAGONAL_ENTRIES      = 3,
583382164b0SBarry Smith   MAT_IGNORE_OFF_PROC_ENTRIES     = 4,
584382164b0SBarry Smith   MAT_USE_HASH_TABLE              = 5,
585382164b0SBarry Smith   MAT_KEEP_NONZERO_PATTERN        = 6,
586382164b0SBarry Smith   MAT_IGNORE_ZERO_ENTRIES         = 7,
587382164b0SBarry Smith   MAT_USE_INODES                  = 8,
588382164b0SBarry Smith   MAT_HERMITIAN                   = 9,
589382164b0SBarry Smith   MAT_SYMMETRY_ETERNAL            = 10,
590c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_LOCATION_ERR    = 11,
591382164b0SBarry Smith   MAT_IGNORE_LOWER_TRIANGULAR     = 12,
592382164b0SBarry Smith   MAT_ERROR_LOWER_TRIANGULAR      = 13,
593382164b0SBarry Smith   MAT_GETROW_UPPERTRIANGULAR      = 14,
594382164b0SBarry Smith   MAT_SPD                         = 15,
59592d4d306SBarry Smith   MAT_NO_OFF_PROC_ZERO_ROWS       = 16,
59692d4d306SBarry Smith   MAT_NO_OFF_PROC_ENTRIES         = 17,
59792d4d306SBarry Smith   MAT_NEW_NONZERO_LOCATIONS       = 18,
598c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_ALLOCATION_ERR  = 19,
599c5e4d11fSDmitry Karpeev   MAT_SUBSET_OFF_PROC_ENTRIES     = 20,
600c10200c1SHong Zhang   MAT_SUBMAT_SINGLEIS             = 21,
601957cac9fSHong Zhang   MAT_STRUCTURE_ONLY              = 22,
602071fcb05SBarry Smith   MAT_SORTED_FULL                 = 23,
6031a2c6b5cSJunchao Zhang   MAT_FORM_EXPLICIT_TRANSPOSE     = 24,
604b94d7dedSBarry Smith   MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25,
605b94d7dedSBarry Smith   MAT_SPD_ETERNAL                 = 26,
6069371c9d4SSatish Balay   MAT_OPTION_MAX                  = 27
6079371c9d4SSatish Balay } MatOption;
608e057df02SPaul Mullowney 
6090f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions;
610014dd563SJed Brown PETSC_EXTERN PetscErrorCode     MatSetOption(Mat, MatOption, PetscBool);
6117d68702bSBarry Smith PETSC_EXTERN PetscErrorCode     MatGetOption(Mat, MatOption, PetscBool *);
612856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode     MatPropagateSymmetryOptions(Mat, Mat);
61319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode     MatGetType(Mat, MatType *);
61484cb2905SBarry Smith 
615014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
616014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
617014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
618014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRowUpperTriangular(Mat);
619014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRowUpperTriangular(Mat);
620014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetColumnVector(Mat, Vec, PetscInt);
6218c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArray(Mat, PetscScalar *[]);
6228f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]);
623d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]);
6248c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArray(Mat, PetscScalar *[]);
6258f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]);
626d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]);
62721e72a00SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *);
628bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
6294099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetType(Mat, MatType);
630ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode    MatSeqAIJKron(Mat, Mat, MatReuse, Mat *);
631388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode    MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *));
6324099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList;
633cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJGetArray(Mat, PetscScalar *[]);
634cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJRestoreArray(Mat, PetscScalar *[]);
6358397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJGetArray(Mat, PetscScalar *[]);
6368397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]);
6378c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArray(Mat, PetscScalar *[]);
6388c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArray(Mat, PetscScalar *[]);
639d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDensePlaceArray(Mat, const PetscScalar[]);
640d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseReplaceArray(Mat, const PetscScalar[]);
641d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseResetArray(Mat);
6428572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArrayRead(Mat, const PetscScalar *[]);
6438572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayRead(Mat, const PetscScalar *[]);
6446947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWrite(Mat, PetscScalar *[]);
6456947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWrite(Mat, PetscScalar *[]);
646cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *);
647cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]);
648cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *);
649cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]);
650cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *);
651cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]);
652014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSize(Mat, PetscInt *);
653014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSize(Mat, PetscInt);
654014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSizes(Mat, PetscInt *, PetscInt *);
655014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizes(Mat, PetscInt, PetscInt);
65633d57670SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizesFromMats(Mat, Mat, Mat);
6570da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode    MatSetVariableBlockSizes(Mat, PetscInt, PetscInt *);
6580da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode    MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt **);
6590da83c2eSBarry Smith 
66086aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]);
66186aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]);
6626947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *);
6636947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *);
6646947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *);
6656947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *);
6666947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *);
6676947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *);
668a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
6695ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *);
6701620fd73SBarry Smith 
671014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec);
672014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec);
673014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec);
674014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec);
675014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec);
676014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *);
677014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *);
678014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec);
679014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec);
680014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat);
681bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat);
682eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat);
683f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec);
684f5edf698SHong Zhang 
685d91e6319SBarry Smith /*E
686d91e6319SBarry Smith     MatDuplicateOption - Indicates if a duplicated sparse matrix should have
687d91e6319SBarry Smith   its numerical values copied over or just its nonzero structure.
688d91e6319SBarry Smith 
689d91e6319SBarry Smith     Level: beginner
690d91e6319SBarry Smith 
6912ef1f0ffSBarry Smith     Values:
6922ef1f0ffSBarry Smith +   `MAT_DO_NOT_COPY_VALUES`    - Create a matrix using the same nonzero pattern as the original matrix,
6932ef1f0ffSBarry Smith                                with zeros for the numerical values
6942ef1f0ffSBarry Smith .   `MAT_COPY_VALUES`           - Create a matrix with the same nonzero pattern as the original matrix
6952ef1f0ffSBarry Smith                                and with the same numerical values.
6962ef1f0ffSBarry Smith -   `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix
6972ef1f0ffSBarry Smith                                and does not copy it, using zeros for the numerical values. The parent and
6982ef1f0ffSBarry Smith                                child matrices will share their index (i and j) arrays, and you cannot
6992ef1f0ffSBarry Smith                                insert new nonzero entries into either matrix
7000018da39SRichard Tran Mills 
70187497f52SBarry Smith   Note:
70287497f52SBarry Smith   Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in
70387497f52SBarry Smith   this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified.
70470dcbbb9SBarry Smith 
7052ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatDuplicate()`
706d91e6319SBarry Smith E*/
7079371c9d4SSatish Balay typedef enum {
7089371c9d4SSatish Balay   MAT_DO_NOT_COPY_VALUES,
7099371c9d4SSatish Balay   MAT_COPY_VALUES,
7109371c9d4SSatish Balay   MAT_SHARE_NONZERO_PATTERN
7119371c9d4SSatish Balay } MatDuplicateOption;
7122e8a6d31SBarry Smith 
71319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *);
714014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *);
71594a9d846SBarry Smith 
716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure);
717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer);
718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *);
719014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *);
720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *);
721014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *);
722014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *);
723b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *);
724b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *);
725014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *);
726014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer);
7277b80b807SBarry Smith 
7281a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7291a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7301a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7311a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
732d4fbbf0eSBarry Smith 
733d91e6319SBarry Smith /*S
73487497f52SBarry Smith      MatInfo - Context of matrix information, used with `MatGetInfo()`
735d91e6319SBarry Smith 
736d91e6319SBarry Smith    Level: intermediate
737d91e6319SBarry Smith 
7382ef1f0ffSBarry Smith    Fortran Note:
7392ef1f0ffSBarry Smith    Information is stored as a double-precision array of dimension `MAT_INFO_SIZE`
7402ef1f0ffSBarry Smith 
7412ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatGetInfo()`, `MatInfoType`
742d91e6319SBarry Smith S*/
7434e220ebcSLois Curfman McInnes typedef struct {
744b0a32e0cSBarry Smith   PetscLogDouble block_size;                          /* block size */
745b0a32e0cSBarry Smith   PetscLogDouble nz_allocated, nz_used, nz_unneeded;  /* number of nonzeros */
746b0a32e0cSBarry Smith   PetscLogDouble memory;                              /* memory allocated */
747b0a32e0cSBarry Smith   PetscLogDouble assemblies;                          /* number of matrix assemblies called */
748b0a32e0cSBarry Smith   PetscLogDouble mallocs;                             /* number of mallocs during MatSetValues() */
749b0a32e0cSBarry Smith   PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */
750b0a32e0cSBarry Smith   PetscLogDouble factor_mallocs;                      /* number of mallocs during factorization */
7514e220ebcSLois Curfman McInnes } MatInfo;
7524e220ebcSLois Curfman McInnes 
753d9274352SBarry Smith /*E
754d9274352SBarry Smith     MatInfoType - Indicates if you want information about the local part of the matrix,
755d9274352SBarry Smith      the entire parallel matrix or the maximum over all the local parts.
756d9274352SBarry Smith 
757d9274352SBarry Smith     Level: beginner
758d9274352SBarry Smith 
7592ef1f0ffSBarry Smith     Values:
7602ef1f0ffSBarry Smith +   `MAT_LOCAL` - values for each MPI process part of the matrix
7612ef1f0ffSBarry Smith .   `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes
7622ef1f0ffSBarry Smith -   `MAT_GLOBAL_SUM` - sum of each value over all MPI processes
763d9274352SBarry Smith 
7642ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatGetInfo()`, `MatInfo`
765d9274352SBarry Smith E*/
7669371c9d4SSatish Balay typedef enum {
7679371c9d4SSatish Balay   MAT_LOCAL      = 1,
7689371c9d4SSatish Balay   MAT_GLOBAL_MAX = 2,
7699371c9d4SSatish Balay   MAT_GLOBAL_SUM = 3
7709371c9d4SSatish Balay } MatInfoType;
771014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *);
772014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec);
773014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]);
774014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]);
775014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]);
776014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]);
777014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec);
778014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *);
7797fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *);
7807fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat);
781014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *);
782014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *);
783014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec);
784014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode);
785a52676ecSHong Zhang 
786014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *);
787014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *);
788014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *);
789014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
790014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
791e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
792e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
793a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
794a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
795cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
7964222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
797447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
79886919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *);
7997b80b807SBarry Smith 
800014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *);
801014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *);
802857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *);
803857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *);
804857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *);
805857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *);
806857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *);
807857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *);
808857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *);
809014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat);
8101b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat);
811014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
812014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec);
813014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
814014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
815014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec);
8177b80b807SBarry Smith 
818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *);
819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *);
820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *);
821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **);
822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *);
823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **);
824566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *);
8255ef9f2a5SBarry Smith 
8267dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
827d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatrices() (since version 3.8)") static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
828d71ae5a4SJacob Faibussowitsch {
8299371c9d4SSatish Balay   return MatCreateSubMatrices(mat, n, irow, icol, scall, submat);
8309371c9d4SSatish Balay }
8317dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
832d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatricesMPI() (since version 3.8)") static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
833d71ae5a4SJacob Faibussowitsch {
8349371c9d4SSatish Balay   return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat);
8359371c9d4SSatish Balay }
836014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]);
837df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]);
8387dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *);
839d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatrix() (since version 3.8)") static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat)
840d71ae5a4SJacob Faibussowitsch {
8419371c9d4SSatish Balay   return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat);
8429371c9d4SSatish Balay }
843014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *);
844014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *);
845014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *);
846014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *);
8477b80b807SBarry Smith 
848014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *);
849014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *);
850014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat);
851014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *);
8528a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *);
853014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
854ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *);
855f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *);
856014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *);
857014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]);
8588efafbd8SBarry Smith 
859014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt);
860aa1e27eaSFande Kong PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov);
861d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool);
8627b80b807SBarry Smith 
863014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
86422440eb1SKris Buschelman 
8657bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
8662df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
8677bab7c10SHong Zhang 
868014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *);
869014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *);
87022440eb1SKris Buschelman 
871014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
872014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *);
873bc011b1eSHong Zhang 
874014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure);
875014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure);
8761c741599SHong Zhang 
877014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar);
878014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar);
8797b80b807SBarry Smith 
880014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping);
881014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
882a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *);
88381fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout);
884014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
885014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
886014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
887014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
888e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
889014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
890014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
891052efed2SBarry Smith 
892014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt);
893014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *);
89490f02eecSBarry Smith 
895014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec);
896014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec);
897014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec);
89830b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *);
89930b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *);
90030b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *);
9012a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *);
902d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateVecs() (since version 3.6)") static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y)
903d71ae5a4SJacob Faibussowitsch {
9049371c9d4SSatish Balay   return MatCreateVecs(mat, x, y);
9059371c9d4SSatish Balay }
90653cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *);
907014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *);
908014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *);
9093a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *);
9109c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *);
911bd481603SBarry Smith 
912bd481603SBarry Smith /*MC
9131620fd73SBarry Smith    MatSetValue - Set a single entry into a matrix.
9141620fd73SBarry Smith 
91520f4b53cSBarry Smith    Not Collective
9161620fd73SBarry Smith 
917a9834a7dSSatish Balay    Synopsis:
918a9834a7dSSatish Balay      #include <petscmat.h>
919a9834a7dSSatish Balay      PetscErrorCode MatSetValue(Mat m,PetscInt row,PetscInt col,PetscScalar value,InsertMode mode)
920a9834a7dSSatish Balay 
9211620fd73SBarry Smith    Input Parameters:
9221620fd73SBarry Smith +  m - the matrix
9231620fd73SBarry Smith .  row - the row location of the entry
9241620fd73SBarry Smith .  col - the column location of the entry
9251620fd73SBarry Smith .  value - the value to insert
92687497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
9271620fd73SBarry Smith 
9281620fd73SBarry Smith    Level: beginner
9291620fd73SBarry Smith 
9302ef1f0ffSBarry Smith    Note:
9312ef1f0ffSBarry Smith    For efficiency one should use `MatSetValues()` and set several values simultaneously.
9322ef1f0ffSBarry Smith 
9332ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `InsertMode`, `MatGetValue()`, `MatSetValues()`,
9342ef1f0ffSBarry Smith           `MatSetValueLocal()`, `MatSetValuesLocal()`
9351620fd73SBarry Smith M*/
936d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValue(Mat v, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
937d71ae5a4SJacob Faibussowitsch {
9389371c9d4SSatish Balay   return MatSetValues(v, 1, &i, 1, &j, &va, mode);
9399371c9d4SSatish Balay }
9401620fd73SBarry Smith 
941e5e5a7b5SPatrick Sanan /*@C
942e5e5a7b5SPatrick Sanan    MatGetValue - Gets a single value from a matrix
9431620fd73SBarry Smith 
944e5e5a7b5SPatrick Sanan    Not Collective; can only return a value owned by the given process
945e5e5a7b5SPatrick Sanan 
946e5e5a7b5SPatrick Sanan    Input Parameters:
947e5e5a7b5SPatrick Sanan +  mat - the matrix
948e5e5a7b5SPatrick Sanan .  row - the row location of the entry
949e5e5a7b5SPatrick Sanan -  col - the column location of the entry
950e5e5a7b5SPatrick Sanan 
951e5e5a7b5SPatrick Sanan    Output Parameter:
952e5e5a7b5SPatrick Sanan .  va - the value
953e5e5a7b5SPatrick Sanan 
9542ef1f0ffSBarry Smith    Level: advanced
9552ef1f0ffSBarry Smith 
956e5e5a7b5SPatrick Sanan    Notes:
9572ef1f0ffSBarry Smith    The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd` before this call
9582ef1f0ffSBarry Smith 
95987497f52SBarry Smith    For efficiency one should use `MatGetValues()` and get several values simultaneously.
960e5e5a7b5SPatrick Sanan 
96187497f52SBarry Smith    See notes for `MatGetValues()`.
962e5e5a7b5SPatrick Sanan 
9632ef1f0ffSBarry Smith .seealso: [](chapter_matrices),  `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()`
964e5e5a7b5SPatrick Sanan @*/
965d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va)
966d71ae5a4SJacob Faibussowitsch {
9679371c9d4SSatish Balay   return MatGetValues(mat, 1, &row, 1, &col, va);
9689371c9d4SSatish Balay }
969e5e5a7b5SPatrick Sanan 
970e5e5a7b5SPatrick Sanan /*MC
9712ef1f0ffSBarry Smith    MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes.
972e5e5a7b5SPatrick Sanan 
973e5e5a7b5SPatrick Sanan    Not Collective
974e5e5a7b5SPatrick Sanan 
975e5e5a7b5SPatrick Sanan    Input Parameters:
976e5e5a7b5SPatrick Sanan +  m - the matrix
977e5e5a7b5SPatrick Sanan .  row - the row location of the entry
978e5e5a7b5SPatrick Sanan .  col - the column location of the entry
979e5e5a7b5SPatrick Sanan .  value - the value to insert
98087497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
981e5e5a7b5SPatrick Sanan 
9822ef1f0ffSBarry Smith    Level: intermediate
9832ef1f0ffSBarry Smith 
984e5e5a7b5SPatrick Sanan    Notes:
98587497f52SBarry Smith    For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously.
986e5e5a7b5SPatrick Sanan 
98787497f52SBarry Smith    See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used.
988e5e5a7b5SPatrick Sanan 
9892ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatSetValue()`, `MatSetValuesLocal()`
990e5e5a7b5SPatrick Sanan M*/
991d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValueLocal(Mat v, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
992d71ae5a4SJacob Faibussowitsch {
9939371c9d4SSatish Balay   return MatSetValuesLocal(v, 1, &i, 1, &j, &va, mode);
9949371c9d4SSatish Balay }
9951620fd73SBarry Smith 
9961620fd73SBarry Smith /*MC
997d0609cedSBarry Smith    MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per
998bd481603SBarry Smith        row in a matrix providing the data that one can use to correctly preallocate the matrix.
999bd481603SBarry Smith 
1000bd481603SBarry Smith    Synopsis:
1001aaa7dc30SBarry Smith    #include <petscmat.h>
1002d0609cedSBarry Smith    PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz)
1003bd481603SBarry Smith 
1004d083f849SBarry Smith    Collective
1005bd481603SBarry Smith 
1006bd481603SBarry Smith    Input Parameters:
1007bd481603SBarry Smith +  comm - the communicator that will share the eventually allocated matrix
1008859fcb39SBarry Smith .  nrows - the number of LOCAL rows in the matrix
1009859fcb39SBarry Smith -  ncols - the number of LOCAL columns in the matrix
1010bd481603SBarry Smith 
1011bd481603SBarry Smith    Output Parameters:
1012bd481603SBarry Smith +  dnz - the array that will be passed to the matrix preallocation routines
1013a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1014bd481603SBarry Smith 
10152ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1016bd481603SBarry Smith 
1017bd481603SBarry Smith    Notes:
10182ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
10192ef1f0ffSBarry Smith    the use of this routine
10202ef1f0ffSBarry Smith 
1021d0609cedSBarry Smith    This is a macro that handles its own error checking, it does not return an error code.
1022d0609cedSBarry Smith 
10232ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1024bd481603SBarry Smith 
10252ef1f0ffSBarry Smith    Developer Note:
10262ef1f0ffSBarry Smith     This is a MACRO not a function because it has a leading { that is closed by `PetscPreallocateFinalize()`.
1027bd481603SBarry Smith 
10282ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1029db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1030bd481603SBarry Smith M*/
10319371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \
10329371c9d4SSatish Balay   do { \
10333ba16761SJacob Faibussowitsch     PetscInt              __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \
10343ba16761SJacob Faibussowitsch     PetscInt PETSC_UNUSED __start; \
10359566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \
10369566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \
10379371c9d4SSatish Balay     __start = __end - __ncols; \
10389371c9d4SSatish Balay     (void)__start; \
10399566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \
10405f80ce2aSJacob Faibussowitsch   __rstart -= __nrows
10417c922b88SBarry Smith 
1042d0609cedSBarry Smith #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO("GCC warning \"Use MatPreallocateBegin() (since version 3.18)\"") MatPreallocateBegin(__VA_ARGS__)
1043d0609cedSBarry Smith 
1044bd481603SBarry Smith /*MC
1045bd481603SBarry Smith    MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1046bd481603SBarry Smith        inserted using a local number of the rows and columns
1047bd481603SBarry Smith 
1048bd481603SBarry Smith    Synopsis:
1049aaa7dc30SBarry Smith    #include <petscmat.h>
1050c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1051bd481603SBarry Smith 
1052bd481603SBarry Smith    Not Collective
1053bd481603SBarry Smith 
1054bd481603SBarry Smith    Input Parameters:
1055784ac674SJed Brown +  map - the row mapping from local numbering to global numbering
1056bd481603SBarry Smith .  nrows - the number of rows indicated
10571d73ed98SBarry Smith .  rows - the indices of the rows
1058784ac674SJed Brown .  cmap - the column mapping from local to global numbering
1059bd481603SBarry Smith .  ncols - the number of columns in the matrix
1060bd481603SBarry Smith .  cols - the columns indicated
1061bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1062a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1063bd481603SBarry Smith 
10642ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1065bd481603SBarry Smith 
1066bd481603SBarry Smith    Notes:
10672ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
10682ef1f0ffSBarry Smith    the use of this routine
1069bd481603SBarry Smith 
10702ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1071bd481603SBarry Smith 
10722ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1073db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()`
1074bd481603SBarry Smith M*/
107594bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
10769371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1077c4f061fbSSatish Balay 
1078bd481603SBarry Smith /*MC
1079c1154cd5SBarry Smith    MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1080c1154cd5SBarry Smith        inserted using a local number of the rows and columns. This version removes any duplicate columns in cols
1081c1154cd5SBarry Smith 
1082c1154cd5SBarry Smith    Synopsis:
1083c1154cd5SBarry Smith    #include <petscmat.h>
1084c1154cd5SBarry Smith    PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1085c1154cd5SBarry Smith 
1086c1154cd5SBarry Smith    Not Collective
1087c1154cd5SBarry Smith 
1088c1154cd5SBarry Smith    Input Parameters:
1089c1154cd5SBarry Smith +  map - the row mapping from local numbering to global numbering
1090c1154cd5SBarry Smith .  nrows - the number of rows indicated
1091c1154cd5SBarry Smith .  rows - the indices of the rows (these values are mapped to the global values)
1092c1154cd5SBarry Smith .  cmap - the column mapping from local to global numbering
1093c1154cd5SBarry Smith .  ncols - the number of columns in the matrix   (this value will be changed if duplicate columns are found)
1094c1154cd5SBarry Smith .  cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed)
1095c1154cd5SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1096a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1097c1154cd5SBarry Smith 
10982ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1099c1154cd5SBarry Smith 
1100c1154cd5SBarry Smith    Notes:
11012ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11022ef1f0ffSBarry Smith    the use of this routine
1103c1154cd5SBarry Smith 
11042ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1105c1154cd5SBarry Smith 
11062ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1107db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1108c1154cd5SBarry Smith M*/
110994bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11109371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1111c1154cd5SBarry Smith 
1112c1154cd5SBarry Smith /*MC
1113d6e23781SBarry Smith    MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1114bd481603SBarry Smith        inserted using a local number of the rows and columns
1115bd481603SBarry Smith 
1116bd481603SBarry Smith    Synopsis:
1117aaa7dc30SBarry Smith    #include <petscmat.h>
1118d6e23781SBarry Smith    PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1119d6e23781SBarry Smith 
1120d6e23781SBarry Smith    Not Collective
1121d6e23781SBarry Smith 
1122d6e23781SBarry Smith    Input Parameters:
1123d6e23781SBarry Smith +  map - the row mapping from local numbering to global numbering
1124d6e23781SBarry Smith .  nrows - the number of rows indicated
1125d6e23781SBarry Smith .  rows - the indices of the rows
1126d6e23781SBarry Smith .  cmap - the column mapping from local to global numbering
1127d6e23781SBarry Smith .  ncols - the number of columns in the matrix
1128d6e23781SBarry Smith .  cols - the columns indicated
1129d6e23781SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1130a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1131d6e23781SBarry Smith 
11322ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1133d6e23781SBarry Smith 
1134d6e23781SBarry Smith    Notes:
11352ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11362ef1f0ffSBarry Smith    the use of this routine
1137d6e23781SBarry Smith 
11382ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1139d6e23781SBarry Smith 
11402ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1141db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`
1142d6e23781SBarry Smith M*/
114394bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11449371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1145d6e23781SBarry Smith 
1146d6e23781SBarry Smith /*MC
1147d6e23781SBarry Smith    MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1148d6e23781SBarry Smith        inserted using a local number of the rows and columns
1149d6e23781SBarry Smith 
1150d6e23781SBarry Smith    Synopsis:
1151d6e23781SBarry Smith    #include <petscmat.h>
1152d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1153bd481603SBarry Smith 
1154bd481603SBarry Smith    Not Collective
1155bd481603SBarry Smith 
1156bd481603SBarry Smith    Input Parameters:
1157bd481603SBarry Smith +  map - the mapping between local numbering and global numbering
1158bd481603SBarry Smith .  nrows - the number of rows indicated
11591d73ed98SBarry Smith .  rows - the indices of the rows
1160bd481603SBarry Smith .  ncols - the number of columns in the matrix
1161bd481603SBarry Smith .  cols - the columns indicated
1162bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1163a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1164bd481603SBarry Smith 
11652ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1166bd481603SBarry Smith 
1167bd481603SBarry Smith    Notes:
11682ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11692ef1f0ffSBarry Smith    the use of this routine
1170bd481603SBarry Smith 
11712ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1172bd481603SBarry Smith 
11732ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`
1174db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1175bd481603SBarry Smith M*/
117694bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \
11779371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));)
1178e83a5d19SLisandro Dalcin 
1179bd481603SBarry Smith /*MC
1180bd481603SBarry Smith    MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1181bd481603SBarry Smith        inserted using a local number of the rows and columns
1182bd481603SBarry Smith 
1183bd481603SBarry Smith    Synopsis:
1184aaa7dc30SBarry Smith    #include <petscmat.h>
1185c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1186bd481603SBarry Smith 
1187bd481603SBarry Smith    Not Collective
1188bd481603SBarry Smith 
1189bd481603SBarry Smith    Input Parameters:
119064075487SBarry Smith +  row - the row
1191bd481603SBarry Smith .  ncols - the number of columns in the matrix
1192a50f8bf6SHong Zhang -  cols - the columns indicated
1193a50f8bf6SHong Zhang 
1194a50f8bf6SHong Zhang    Output Parameters:
1195a50f8bf6SHong Zhang +  dnz - the array that will be passed to the matrix preallocation routines
1196a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1197bd481603SBarry Smith 
11982ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1199bd481603SBarry Smith 
1200bd481603SBarry Smith    Notes:
12012ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12022ef1f0ffSBarry Smith    the use of this routine
1203bd481603SBarry Smith 
12042ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1205bd481603SBarry Smith 
1206d0609cedSBarry Smith    This is a MACRO not a function because it uses variables declared in MatPreallocateBegin().
12071620fd73SBarry Smith 
12082ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1209db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1210bd481603SBarry Smith M*/
12119371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \
12129371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \
121364075487SBarry Smith     if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \
1214a6042fd4SStefano Zampini     else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12159371c9d4SSatish Balay   })
12167c922b88SBarry Smith 
1217bd481603SBarry Smith /*MC
1218d6e23781SBarry Smith    MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1219bd481603SBarry Smith        inserted using a local number of the rows and columns
1220bd481603SBarry Smith 
1221bd481603SBarry Smith    Synopsis:
1222aaa7dc30SBarry Smith    #include <petscmat.h>
1223d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1224bd481603SBarry Smith 
1225bd481603SBarry Smith    Not Collective
1226bd481603SBarry Smith 
1227bd481603SBarry Smith    Input Parameters:
1228bd481603SBarry Smith +  nrows - the number of rows indicated
12291d73ed98SBarry Smith .  rows - the indices of the rows
1230bd481603SBarry Smith .  ncols - the number of columns in the matrix
1231bd481603SBarry Smith .  cols - the columns indicated
1232bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1233a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1234bd481603SBarry Smith 
12352ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1236bd481603SBarry Smith 
1237bd481603SBarry Smith    Notes:
12382ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12392ef1f0ffSBarry Smith    the use of this routine
1240bd481603SBarry Smith 
12412ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1242bd481603SBarry Smith 
1243d0609cedSBarry Smith    This is a MACRO not a function because it uses variables declared in MatPreallocateBegin().
12441620fd73SBarry Smith 
12452ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`,
1246db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1247bd481603SBarry Smith M*/
124894bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \
12499371c9d4SSatish Balay   PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \
1250d3d32019SBarry Smith     if (cols[__i] >= __end) onz[row - __rstart]++; \
1251a6042fd4SStefano Zampini     else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12529371c9d4SSatish Balay   })
1253d3d32019SBarry Smith 
1254bd481603SBarry Smith /*MC
1255a6042fd4SStefano Zampini    MatPreallocateLocation -  An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists
125616371a99SBarry Smith 
125716371a99SBarry Smith    Synopsis:
1258aaa7dc30SBarry Smith    #include <petscmat.h>
125916371a99SBarry Smith    PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz)
126016371a99SBarry Smith 
126116371a99SBarry Smith    Not Collective
126216371a99SBarry Smith 
126316371a99SBarry Smith    Input Parameters:
1264a2b725a8SWilliam Gropp +  A - matrix
126516371a99SBarry Smith .  row - row where values exist (must be local to this process)
126616371a99SBarry Smith .  ncols - number of columns
126716371a99SBarry Smith .  cols - columns with nonzeros
126816371a99SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1269a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
127016371a99SBarry Smith 
12712ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
127216371a99SBarry Smith 
127316371a99SBarry Smith    Notes:
12742ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12752ef1f0ffSBarry Smith    the use of this routine
127616371a99SBarry Smith 
12772ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
127816371a99SBarry Smith 
127916371a99SBarry Smith    This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines.
128016371a99SBarry Smith 
12812ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1282db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
128316371a99SBarry Smith M*/
1284d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz))
128516371a99SBarry Smith 
128616371a99SBarry Smith /*MC
1287d0609cedSBarry Smith    MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per
1288bd481603SBarry Smith        row in a matrix providing the data that one can use to correctly preallocate the matrix.
1289bd481603SBarry Smith 
1290bd481603SBarry Smith    Synopsis:
1291aaa7dc30SBarry Smith    #include <petscmat.h>
1292d0609cedSBarry Smith    PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz)
1293bd481603SBarry Smith 
1294d083f849SBarry Smith    Collective
1295bd481603SBarry Smith 
1296bd481603SBarry Smith    Input Parameters:
129716371a99SBarry Smith +  dnz - the array that was be passed to the matrix preallocation routines
1298a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1299bd481603SBarry Smith 
13002ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1301bd481603SBarry Smith 
1302bd481603SBarry Smith    Notes:
13032ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
13042ef1f0ffSBarry Smith    the use of this routine
1305d0609cedSBarry Smith 
13062ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1307bd481603SBarry Smith 
13082ef1f0ffSBarry Smith    Developer Note:
1309d0609cedSBarry Smith     This is a MACRO not a function because it closes the { started in MatPreallocateBegin().
13101620fd73SBarry Smith 
13112ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1312db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1313bd481603SBarry Smith M*/
13149371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \
13159371c9d4SSatish Balay   PetscCall(PetscFree2(dnz, onz)); \
13169371c9d4SSatish Balay   } \
13179371c9d4SSatish Balay   while (0)
1318d0609cedSBarry Smith 
1319d0609cedSBarry Smith #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO("GCC warning \"Use MatPreallocateEnd() (since version 3.18)\"") MatPreallocateEnd(__VA_ARGS__)
13207c922b88SBarry Smith 
13217b80b807SBarry Smith /* Routines unique to particular data structures */
1322014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *);
1323698d4c6aSKris Buschelman 
1324014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *);
1325014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *);
1326698d4c6aSKris Buschelman 
1327014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]);
1328014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]);
1329014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1330014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1331014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1332014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool);
13337b80b807SBarry Smith 
1334a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4
1335a96a251dSBarry Smith 
1336014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1337014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1338014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]);
133919b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt);
1340273d9f13SBarry Smith 
1341014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1342014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1343014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1344014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1345014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1346014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1347014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1348014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]);
1349b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *);
1350252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *);
1351014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]);
1352014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]);
13539230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
13549230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
1355014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *);
1356273d9f13SBarry Smith 
135749a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *);
1358ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt);
1359d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatDenseSetLDA() (since version 3.14)") static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda)
1360d71ae5a4SJacob Faibussowitsch {
13619371c9d4SSatish Balay   return MatDenseSetLDA(A, lda);
13629371c9d4SSatish Balay }
1363014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *);
13641b807ce4Svictorle 
1365621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1366621e819fSSatish Balay 
1367014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat);
1368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat);
13692e8a6d31SBarry Smith 
1370014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *);
13717cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *);
13727b80b807SBarry Smith /*
13737b80b807SBarry Smith   These routines are not usually accessed directly, rather solving is
137494b7f48cSBarry Smith   done through the KSP and PC interfaces.
13757b80b807SBarry Smith */
13767b80b807SBarry Smith 
137776bdecfbSBarry Smith /*J
13782ef1f0ffSBarry Smith     MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used
13792ef1f0ffSBarry Smith     to reduce fill in sparse factorizations.
1380d9274352SBarry Smith 
1381d9274352SBarry Smith    Level: beginner
1382d9274352SBarry Smith 
13832c7c0729SBarry Smith    Notes:
13842ef1f0ffSBarry Smith    If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external package called utilizes one
13852ef1f0ffSBarry Smith    in the external the factorization package
13862c7c0729SBarry Smith 
13872ef1f0ffSBarry Smith    There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()`
13882ef1f0ffSBarry Smith 
13892ef1f0ffSBarry Smith    Developer Note:
13902ef1f0ffSBarry Smith    This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning`
13912ef1f0ffSBarry Smith 
13922ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`,
13932ef1f0ffSBarry Smith           `PCFactorSetOrderingType()`
139476bdecfbSBarry Smith J*/
139519fd82e9SBarry Smith typedef const char *MatOrderingType;
13962692d6eeSBarry Smith #define MATORDERINGNATURAL       "natural"
13972692d6eeSBarry Smith #define MATORDERINGND            "nd"
13982692d6eeSBarry Smith #define MATORDERING1WD           "1wd"
13992692d6eeSBarry Smith #define MATORDERINGRCM           "rcm"
14002692d6eeSBarry Smith #define MATORDERINGQMD           "qmd"
14012692d6eeSBarry Smith #define MATORDERINGROWLENGTH     "rowlength"
1402510184a7SJed Brown #define MATORDERINGWBM           "wbm"
1403fc1bef75SJed Brown #define MATORDERINGSPECTRAL      "spectral"
1404312e372aSBarry Smith #define MATORDERINGAMD           "amd"           /* only works if UMFPACK is installed with PETSc */
1405048412efSPablo Brubeck #define MATORDERINGMETISND       "metisnd"       /* only works if METIS is installed with PETSc */
14069bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */
14072c7c0729SBarry Smith #define MATORDERINGEXTERNAL      "external"      /* uses an ordering type internal to the factorization package */
1408b12f92e5SBarry Smith 
140919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrdering(Mat, MatOrderingType, IS *, IS *);
1410140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrderingList(PetscFunctionList *);
1411bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode    MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *));
1412140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList;
1413d4fbbf0eSBarry Smith 
1414013e2dc7SBarry Smith #include "petscmatcoarsen.h"
1415013e2dc7SBarry Smith 
1416014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS);
1417fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *);
1418a2ce50c7SBarry Smith 
14194ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *);
14204ac6704cSBarry Smith 
1421d91e6319SBarry Smith /*S
14222ef1f0ffSBarry Smith     MatFactorShiftType - Type of numeric shift used for factorizations
1423d90ac83dSHong Zhang 
14242ef1f0ffSBarry Smith    Values:
14252ef1f0ffSBarry Smith +  `MAT_SHIFT_NONE` - do not shift the matrix diagonal entries
14262ef1f0ffSBarry Smith .  `MAT_SHIFT_NONZERO` - shift the entries to be non-zero
14272ef1f0ffSBarry Smith .  `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite
14282ef1f0ffSBarry Smith -  `MAT_SHIFT_INBLOCKS` - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ`
1429d90ac83dSHong Zhang 
14302ef1f0ffSBarry Smith    Level: intermediate
14312ef1f0ffSBarry Smith 
14322ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()`
1433d90ac83dSHong Zhang S*/
14349371c9d4SSatish Balay typedef enum {
14359371c9d4SSatish Balay   MAT_SHIFT_NONE,
14369371c9d4SSatish Balay   MAT_SHIFT_NONZERO,
14379371c9d4SSatish Balay   MAT_SHIFT_POSITIVE_DEFINITE,
14389371c9d4SSatish Balay   MAT_SHIFT_INBLOCKS
14399371c9d4SSatish Balay } MatFactorShiftType;
14406a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[];
14415e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[];
1442d90ac83dSHong Zhang 
1443d90ac83dSHong Zhang /*S
1444ec5066bdSBarry Smith     MatFactorError - indicates what type of error was generated in a matrix factorization
14459aa7eafdSHong Zhang 
14462ef1f0ffSBarry Smith     Values:
14472ef1f0ffSBarry Smith +   `MAT_FACTOR_NOERROR` - there was no error during the factorization
14482ef1f0ffSBarry Smith .   `MAT_FACTOR_STRUCT_ZEROPIVOT` - there was a missing entry in a diagonal location of the matrix
14492ef1f0ffSBarry Smith .   `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization
14502ef1f0ffSBarry Smith .   `MAT_FACTOR_OUTMEMORY` - the factorization has run out of memory
14512ef1f0ffSBarry Smith -   `MAT_FACTOR_OTHER` - some other error has occurred.
14529aa7eafdSHong Zhang 
14532ef1f0ffSBarry Smith     Level: intermediate
145400e125f8SBarry Smith 
14552ef1f0ffSBarry Smith     Note:
14562ef1f0ffSBarry Smith     When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason`
14572ef1f0ffSBarry Smith 
14582ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`,
14592ef1f0ffSBarry Smith           `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason`
14609aa7eafdSHong Zhang S*/
14619371c9d4SSatish Balay typedef enum {
14629371c9d4SSatish Balay   MAT_FACTOR_NOERROR,
14639371c9d4SSatish Balay   MAT_FACTOR_STRUCT_ZEROPIVOT,
14649371c9d4SSatish Balay   MAT_FACTOR_NUMERIC_ZEROPIVOT,
14659371c9d4SSatish Balay   MAT_FACTOR_OUTMEMORY,
14669371c9d4SSatish Balay   MAT_FACTOR_OTHER
14679371c9d4SSatish Balay } MatFactorError;
14689aa7eafdSHong Zhang 
146900e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *);
1470b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat);
14717b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *);
147200e125f8SBarry Smith 
14739aa7eafdSHong Zhang /*S
1474422a814eSBarry Smith    MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization
1475b00f7748SHong Zhang 
1476b00f7748SHong Zhang    Level: developer
1477b00f7748SHong Zhang 
14782ef1f0ffSBarry Smith    Note:
14792ef1f0ffSBarry Smith    You can use `MatFactorInfoInitialize()` to set default values.
1480b00f7748SHong Zhang 
14812ef1f0ffSBarry Smith    Fortran Note:
14822ef1f0ffSBarry Smith    The data is available in a double precision arrays of size `MAT_FACTORINFO_SIZE`
14832ef1f0ffSBarry Smith 
14842ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`,
14852ef1f0ffSBarry Smith           `MatICCFactorSymbolic()`, `MatICCFactor()`,  `MatFactorInfoInitialize()`
1486b00f7748SHong Zhang S*/
1487b00f7748SHong Zhang typedef struct {
148815e8a5b3SHong Zhang   PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */
148985317021SBarry Smith   PetscReal usedt;
149015e8a5b3SHong Zhang   PetscReal dt;            /* drop tolerance */
1491b00f7748SHong Zhang   PetscReal dtcol;         /* tolerance for pivoting */
149215e8a5b3SHong Zhang   PetscReal dtcount;       /* maximum nonzeros to be allowed per row */
149367e28bfeSBarry Smith   PetscReal fill;          /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */
1494348344bbSBarry Smith   PetscReal levels;        /* ICC/ILU(levels) */
1495bcd9e38bSBarry Smith   PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0
1496bcd9e38bSBarry Smith                                    factorization may be faster if do not pivot */
149715e8a5b3SHong Zhang   PetscReal zeropivot;     /* pivot is called zero if less than this */
1498f4db908eSBarry Smith   PetscReal shifttype;     /* type of shift added to matrix factor to prevent zero pivots */
1499f4db908eSBarry Smith   PetscReal shiftamount;   /* how large the shift is */
150015e8a5b3SHong Zhang } MatFactorInfo;
1501ffa6d0a5SLois Curfman McInnes 
1502014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *);
15039a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *);
15049a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15059a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *);
15069a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *);
15079a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *);
15089a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15099a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15109a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15119a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *);
15129a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *);
15133f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *);
15143f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15153f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *);
1516014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *);
1517014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec);
1518014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec);
1519014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec);
1520014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec);
1521014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec);
1522014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec);
1523014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs);
15247c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat);
15257c2f51b8SStefano Zampini 
15269371c9d4SSatish Balay typedef enum {
15279371c9d4SSatish Balay   MAT_FACTOR_SCHUR_UNFACTORED,
15289371c9d4SSatish Balay   MAT_FACTOR_SCHUR_FACTORED,
15299371c9d4SSatish Balay   MAT_FACTOR_SCHUR_INVERTED
15309371c9d4SSatish Balay } MatFactorSchurStatus;
15318e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS);
15327c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15337c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus);
15345a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat);
15357c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15365a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec);
15375a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec);
15386dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat);
1539bb5a7306SBarry Smith 
15408a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat);
1541d91e6319SBarry Smith /*E
1542d91e6319SBarry Smith     MatSORType - What type of (S)SOR to perform
1543bb1eb677SSatish Balay 
15442ef1f0ffSBarry Smith    Values:
15452ef1f0ffSBarry Smith +  `SOR_FORWARD_SWEEP` - do a sweep from the first row of the matrix to the last
15462ef1f0ffSBarry Smith .  `SOR_BACKWARD_SWEEP` -  do a sweep from the last row to the first
15472ef1f0ffSBarry Smith .  `SOR_SYMMETRIC_SWEEP` - do a sweep from the first row to the last and then back to the first
15482ef1f0ffSBarry Smith .  `SOR_LOCAL_FORWARD_SWEEP` - each MPI rank does its own forward sweep with no communication
15492ef1f0ffSBarry Smith .  `SOR_LOCAL_BACKWARD_SWEEP` - each MPI rank does its own backward sweep with no communication
15502ef1f0ffSBarry Smith .  `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI rank does its own symmetric sweep with no communication
15512ef1f0ffSBarry Smith .  `SOR_ZERO_INITIAL_GUESS` - indicates the initial solution is zero so the sweep can avoid unneeded computation
15522ef1f0ffSBarry Smith .  `SOR_EISENSTAT` - apply the Eisentat application of SOR, see `PCEISENSTAT`
15532ef1f0ffSBarry Smith .  `SOR_APPLY_UPPER` - multiply by the upper triangular portion of the matrix
15542ef1f0ffSBarry Smith -  `SOR_APPLY_LOWER` - multiply by the lower triangular portion of the matrix
15552ef1f0ffSBarry Smith 
1556d91e6319SBarry Smith     Level: beginner
1557d91e6319SBarry Smith 
15582ef1f0ffSBarry Smith    Note:
15592ef1f0ffSBarry Smith    These may be bitwise ORd together
1560d9274352SBarry Smith 
15612ef1f0ffSBarry Smith    Developer Note:
15622ef1f0ffSBarry Smith    Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below
1563d91e6319SBarry Smith 
15642ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatSOR()`
1565d91e6319SBarry Smith E*/
15669371c9d4SSatish Balay typedef enum {
15679371c9d4SSatish Balay   SOR_FORWARD_SWEEP         = 1,
15689371c9d4SSatish Balay   SOR_BACKWARD_SWEEP        = 2,
15699371c9d4SSatish Balay   SOR_SYMMETRIC_SWEEP       = 3,
15709371c9d4SSatish Balay   SOR_LOCAL_FORWARD_SWEEP   = 4,
15719371c9d4SSatish Balay   SOR_LOCAL_BACKWARD_SWEEP  = 8,
15729371c9d4SSatish Balay   SOR_LOCAL_SYMMETRIC_SWEEP = 12,
15739371c9d4SSatish Balay   SOR_ZERO_INITIAL_GUESS    = 16,
15749371c9d4SSatish Balay   SOR_EISENSTAT             = 32,
15759371c9d4SSatish Balay   SOR_APPLY_UPPER           = 64,
15769371c9d4SSatish Balay   SOR_APPLY_LOWER           = 128
15779371c9d4SSatish Balay } MatSORType;
1578014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
15798ed539a5SBarry Smith 
15807086a01eSPeter Brune /*S
15817086a01eSPeter Brune      MatColoring - Object for managing the coloring of matrices.
15827086a01eSPeter Brune 
15837086a01eSPeter Brune    Level: beginner
15847086a01eSPeter Brune 
1585ec5066bdSBarry Smith    Notes:
158687497f52SBarry Smith    Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
158787497f52SBarry Smith    matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors).
1588ec5066bdSBarry Smith 
158987497f52SBarry Smith    Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This
15902ef1f0ffSBarry Smith    same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices.
1591ec5066bdSBarry Smith 
15922ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`,
15932ef1f0ffSBarry Smith           `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`,  `MatColoringSetWeightType()`,
15942ef1f0ffSBarry Smith           `MatColoringSetWeights()`, `MatCoarsenType`,  `MatCoarsen`
15957086a01eSPeter Brune S*/
1596d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring;
1597d4db15c4SBarry Smith 
1598d4db15c4SBarry Smith /*J
1599d4db15c4SBarry Smith     MatColoringType - String with the name of a PETSc matrix coloring
1600d9274352SBarry Smith 
1601d9274352SBarry Smith    Level: beginner
1602d9274352SBarry Smith 
16032ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring`
160476bdecfbSBarry Smith J*/
160519fd82e9SBarry Smith typedef const char *MatColoringType;
16065567d71aSPeter Brune #define MATCOLORINGJP      "jp"
1607b9acb617SPeter Brune #define MATCOLORINGPOWER   "power"
16082692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural"
16092692d6eeSBarry Smith #define MATCOLORINGSL      "sl"
16102692d6eeSBarry Smith #define MATCOLORINGLF      "lf"
16112692d6eeSBarry Smith #define MATCOLORINGID      "id"
16128121bdceSPeter Brune #define MATCOLORINGGREEDY  "greedy"
1613b12f92e5SBarry Smith 
16148ac6da0aSPeter Brune /*E
16152ef1f0ffSBarry Smith    MatColoringWeightType - Type of weight scheme used for the coloring algorithm
16168ac6da0aSPeter Brune 
16172ef1f0ffSBarry Smith     Values:
161887497f52SBarry Smith +   `MAT_COLORING_RANDOM`  - Random weights
161987497f52SBarry Smith .   `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering.
162087497f52SBarry Smith -   `MAT_COLORING_LF`      - Last-first weighting.
16218ac6da0aSPeter Brune 
16228ac6da0aSPeter Brune     Level: intermediate
16238ac6da0aSPeter Brune 
16242ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()`
16258ac6da0aSPeter Brune E*/
16269371c9d4SSatish Balay typedef enum {
16279371c9d4SSatish Balay   MAT_COLORING_WEIGHT_RANDOM,
16289371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LEXICAL,
16299371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LF,
16309371c9d4SSatish Balay   MAT_COLORING_WEIGHT_SL
16319371c9d4SSatish Balay } MatColoringWeightType;
16328ac6da0aSPeter Brune 
1633335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *);
1634d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *);
1635335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *);
1636335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer);
1637335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType);
1638335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring);
1639335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt);
1640335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *);
1641335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt);
1642335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *);
1643335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *);
1644335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring));
1645014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *);
16468ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType);
1647c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *);
16488ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm);
1649bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring);
1650d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatColoringTest() (since version 3.10)") static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring)
1651d71ae5a4SJacob Faibussowitsch {
16529371c9d4SSatish Balay   return MatColoringTest(matcoloring, iscoloring);
16539371c9d4SSatish Balay }
1654bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring);
1655639f9d9dSBarry Smith 
1656d9274352SBarry Smith /*S
165787497f52SBarry Smith      MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring
1658639f9d9dSBarry Smith 
1659d9274352SBarry Smith    Level: beginner
1660d9274352SBarry Smith 
1661ec5066bdSBarry Smith    Notes:
166287497f52SBarry Smith    This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()`
1663ec5066bdSBarry Smith 
16642ef1f0ffSBarry Smith    The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object
16652ef1f0ffSBarry Smith 
16662ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()`
1667d9274352SBarry Smith S*/
1668e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring;
1669639f9d9dSBarry Smith 
1670014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *);
1671014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *);
1672014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer);
1673014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *);
1674014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **);
1675014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal);
1676014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring);
1677d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *);
1678014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec);
1679edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]);
1680f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring);
1681f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt);
1682bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *);
1683b1683b59SHong Zhang 
1684b1683b59SHong Zhang /*S
1685b9af6bddSHong Zhang      MatTransposeColoring - Object for computing a sparse matrix product C=A*B^T via coloring
1686b1683b59SHong Zhang 
16872ef1f0ffSBarry Smith    Level: developer
1688b1683b59SHong Zhang 
16892ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()`
1690b1683b59SHong Zhang S*/
1691b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring;
1692b1683b59SHong Zhang 
1693014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *);
1694014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat);
1695014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat);
1696014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *);
1697b1683b59SHong Zhang 
1698d9274352SBarry Smith /*S
1699d9274352SBarry Smith      MatPartitioning - Object for managing the partitioning of a matrix or graph
1700d9274352SBarry Smith 
1701d9274352SBarry Smith    Level: beginner
1702d9274352SBarry Smith 
170387497f52SBarry Smith    Note:
170487497f52SBarry Smith      There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations
170587497f52SBarry Smith      via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`)
1706ec5066bdSBarry Smith 
1707ec5066bdSBarry Smith    Developers Note:
17082ef1f0ffSBarry Smith      It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed
1709ec5066bdSBarry Smith 
17102ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`,
17112ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
1712d9274352SBarry Smith S*/
171391e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning;
1714d9274352SBarry Smith 
171576bdecfbSBarry Smith /*J
17168f6c3df8SBarry Smith     MatPartitioningType - String with the name of a PETSc matrix partitioning
1717d9274352SBarry Smith 
1718d9274352SBarry Smith    Level: beginner
17190d04baf8SBarry Smith dm
17202ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`,
17212ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
172276bdecfbSBarry Smith J*/
172319fd82e9SBarry Smith typedef const char *MatPartitioningType;
17242692d6eeSBarry Smith #define MATPARTITIONINGCURRENT  "current"
1725aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE  "average"
17262692d6eeSBarry Smith #define MATPARTITIONINGSQUARE   "square"
17272692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis"
17282692d6eeSBarry Smith #define MATPARTITIONINGCHACO    "chaco"
17292692d6eeSBarry Smith #define MATPARTITIONINGPARTY    "party"
173050d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch"
173188d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch"
173271306c60Sjroman 
1733014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *);
173419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType);
1735014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt);
1736014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat);
1737252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt);
1738014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]);
1739014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]);
1740ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool);
1741ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *);
1742014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *);
1743fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *);
1744668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS);
1745f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *);
1746014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *);
1747bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning));
1748014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer);
1749fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]);
1750014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning);
175119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *);
1752ca161407SBarry Smith 
175327538973SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part);
1754014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning);
1755014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *);
17560752156aSBarry Smith 
17579371c9d4SSatish Balay typedef enum {
17589371c9d4SSatish Balay   MP_CHACO_MULTILEVEL = 1,
17599371c9d4SSatish Balay   MP_CHACO_SPECTRAL   = 2,
17609371c9d4SSatish Balay   MP_CHACO_LINEAR     = 4,
17619371c9d4SSatish Balay   MP_CHACO_RANDOM     = 5,
17629371c9d4SSatish Balay   MP_CHACO_SCATTERED  = 6
17639371c9d4SSatish Balay } MPChacoGlobalType;
17646a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[];
17659371c9d4SSatish Balay typedef enum {
17669371c9d4SSatish Balay   MP_CHACO_KERNIGHAN = 1,
17679371c9d4SSatish Balay   MP_CHACO_NONE      = 2
17689371c9d4SSatish Balay } MPChacoLocalType;
17696a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[];
17709371c9d4SSatish Balay typedef enum {
17719371c9d4SSatish Balay   MP_CHACO_LANCZOS = 0,
17729371c9d4SSatish Balay   MP_CHACO_RQI     = 1
17739371c9d4SSatish Balay } MPChacoEigenType;
17746a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[];
1775b6956c12SJose Roman 
1776014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType);
1777014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *);
1778014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType);
1779014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *);
1780014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal);
1781014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType);
1782014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *);
1783014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal);
1784014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *);
1785014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt);
1786014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *);
178771306c60Sjroman 
178871306c60Sjroman #define MP_PARTY_OPT "opt"
178971306c60Sjroman #define MP_PARTY_LIN "lin"
179071306c60Sjroman #define MP_PARTY_SCA "sca"
179171306c60Sjroman #define MP_PARTY_RAN "ran"
179271306c60Sjroman #define MP_PARTY_GBF "gbf"
179371306c60Sjroman #define MP_PARTY_GCF "gcf"
179471306c60Sjroman #define MP_PARTY_BUB "bub"
179571306c60Sjroman #define MP_PARTY_DEF "def"
1796014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *);
179771306c60Sjroman #define MP_PARTY_HELPFUL_SETS  "hs"
179871306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl"
179971306c60Sjroman #define MP_PARTY_NONE          "no"
1800014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *);
1801014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal);
1802014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool);
1803014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool);
180471306c60Sjroman 
18059371c9d4SSatish Balay typedef enum {
18069371c9d4SSatish Balay   MP_PTSCOTCH_DEFAULT,
18079371c9d4SSatish Balay   MP_PTSCOTCH_QUALITY,
18089371c9d4SSatish Balay   MP_PTSCOTCH_SPEED,
18099371c9d4SSatish Balay   MP_PTSCOTCH_BALANCE,
18109371c9d4SSatish Balay   MP_PTSCOTCH_SAFETY,
18119371c9d4SSatish Balay   MP_PTSCOTCH_SCALABILITY
18129371c9d4SSatish Balay } MPPTScotchStrategyType;
18136a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[];
1814e0f1cffaSJose Roman 
1815014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal);
1816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *);
1817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType);
1818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *);
181971306c60Sjroman 
1820b43b03e9SMark F. Adams /*
18216294fa2bSFande Kong  * hierarchical partitioning
18226294fa2bSFande Kong  */
18234e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *);
18244e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *);
18254e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt);
18264e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt);
18276294fa2bSFande Kong 
1828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *);
1829591294e4SBarry Smith 
18300752156aSBarry Smith /*
1831c786d857SStefano Zampini     If you add entries here you must also add them to src/mat/f90-mod/petscmat.h
1832c786d857SStefano Zampini     If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx
1833d4fbbf0eSBarry Smith */
18349371c9d4SSatish Balay typedef enum {
18359371c9d4SSatish Balay   MATOP_SET_VALUES               = 0,
18361c1c02c0SLois Curfman McInnes   MATOP_GET_ROW                  = 1,
18371c1c02c0SLois Curfman McInnes   MATOP_RESTORE_ROW              = 2,
18381c1c02c0SLois Curfman McInnes   MATOP_MULT                     = 3,
18391c1c02c0SLois Curfman McInnes   MATOP_MULT_ADD                 = 4,
18407c922b88SBarry Smith   MATOP_MULT_TRANSPOSE           = 5,
18417c922b88SBarry Smith   MATOP_MULT_TRANSPOSE_ADD       = 6,
18421c1c02c0SLois Curfman McInnes   MATOP_SOLVE                    = 7,
18431c1c02c0SLois Curfman McInnes   MATOP_SOLVE_ADD                = 8,
18447c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE          = 9,
18457c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE_ADD      = 10,
18461c1c02c0SLois Curfman McInnes   MATOP_LUFACTOR                 = 11,
18471c1c02c0SLois Curfman McInnes   MATOP_CHOLESKYFACTOR           = 12,
1848a714c06dSBarry Smith   MATOP_SOR                      = 13,
18491c1c02c0SLois Curfman McInnes   MATOP_TRANSPOSE                = 14,
18501c1c02c0SLois Curfman McInnes   MATOP_GETINFO                  = 15,
18511c1c02c0SLois Curfman McInnes   MATOP_EQUAL                    = 16,
18521c1c02c0SLois Curfman McInnes   MATOP_GET_DIAGONAL             = 17,
18531c1c02c0SLois Curfman McInnes   MATOP_DIAGONAL_SCALE           = 18,
18541c1c02c0SLois Curfman McInnes   MATOP_NORM                     = 19,
18551c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_BEGIN           = 20,
18561c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_END             = 21,
1857d519adbfSMatthew Knepley   MATOP_SET_OPTION               = 22,
1858d519adbfSMatthew Knepley   MATOP_ZERO_ENTRIES             = 23,
1859d519adbfSMatthew Knepley   MATOP_ZERO_ROWS                = 24,
1860d519adbfSMatthew Knepley   MATOP_LUFACTOR_SYMBOLIC        = 25,
1861d519adbfSMatthew Knepley   MATOP_LUFACTOR_NUMERIC         = 26,
1862d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27,
1863d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_NUMERIC  = 28,
1864e5f2d425SStefano Zampini   MATOP_SETUP                    = 29,
1865d519adbfSMatthew Knepley   MATOP_ILUFACTOR_SYMBOLIC       = 30,
1866d519adbfSMatthew Knepley   MATOP_ICCFACTOR_SYMBOLIC       = 31,
1867a5b7ff6bSBarry Smith   MATOP_GET_DIAGONAL_BLOCK       = 32,
1868e5f2d425SStefano Zampini   MATOP_SET_INF                  = 33,
1869d519adbfSMatthew Knepley   MATOP_DUPLICATE                = 34,
1870d519adbfSMatthew Knepley   MATOP_FORWARD_SOLVE            = 35,
1871d519adbfSMatthew Knepley   MATOP_BACKWARD_SOLVE           = 36,
1872d519adbfSMatthew Knepley   MATOP_ILUFACTOR                = 37,
1873d519adbfSMatthew Knepley   MATOP_ICCFACTOR                = 38,
1874d519adbfSMatthew Knepley   MATOP_AXPY                     = 39,
18757dae84e0SHong Zhang   MATOP_CREATE_SUBMATRICES       = 40,
1876d519adbfSMatthew Knepley   MATOP_INCREASE_OVERLAP         = 41,
1877d519adbfSMatthew Knepley   MATOP_GET_VALUES               = 42,
1878d519adbfSMatthew Knepley   MATOP_COPY                     = 43,
1879d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX              = 44,
1880d519adbfSMatthew Knepley   MATOP_SCALE                    = 45,
1881d519adbfSMatthew Knepley   MATOP_SHIFT                    = 46,
188235153367SBarry Smith   MATOP_DIAGONAL_SET             = 47,
18839d39f69dSJed Brown   MATOP_ZERO_ROWS_COLUMNS        = 48,
18849d39f69dSJed Brown   MATOP_SET_RANDOM               = 49,
1885d519adbfSMatthew Knepley   MATOP_GET_ROW_IJ               = 50,
1886d519adbfSMatthew Knepley   MATOP_RESTORE_ROW_IJ           = 51,
1887d519adbfSMatthew Knepley   MATOP_GET_COLUMN_IJ            = 52,
1888d519adbfSMatthew Knepley   MATOP_RESTORE_COLUMN_IJ        = 53,
1889d519adbfSMatthew Knepley   MATOP_FDCOLORING_CREATE        = 54,
1890d519adbfSMatthew Knepley   MATOP_COLORING_PATCH           = 55,
1891d519adbfSMatthew Knepley   MATOP_SET_UNFACTORED           = 56,
1892d519adbfSMatthew Knepley   MATOP_PERMUTE                  = 57,
1893d519adbfSMatthew Knepley   MATOP_SET_VALUES_BLOCKED       = 58,
18947dae84e0SHong Zhang   MATOP_CREATE_SUBMATRIX         = 59,
1895d519adbfSMatthew Knepley   MATOP_DESTROY                  = 60,
1896d519adbfSMatthew Knepley   MATOP_VIEW                     = 61,
1897d519adbfSMatthew Knepley   MATOP_CONVERT_FROM             = 62,
1898e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_63=63 */
18997bab7c10SHong Zhang   MATOP_MATMAT_MULT_SYMBOLIC    = 64,
19007bab7c10SHong Zhang   MATOP_MATMAT_MULT_NUMERIC     = 65,
1901d519adbfSMatthew Knepley   MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66,
1902d519adbfSMatthew Knepley   MATOP_SET_VALUES_LOCAL        = 67,
1903d519adbfSMatthew Knepley   MATOP_ZERO_ROWS_LOCAL         = 68,
1904d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX_ABS         = 69,
1905d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN_ABS         = 70,
1906d519adbfSMatthew Knepley   MATOP_CONVERT                 = 71,
1907e5f2d425SStefano Zampini   MATOP_HAS_OPERATION           = 72,
19089d39f69dSJed Brown   /* MATOP_PLACEHOLDER_73=73, */
1909d519adbfSMatthew Knepley   MATOP_SET_VALUES_ADIFOR = 74,
1910d519adbfSMatthew Knepley   MATOP_FD_COLORING_APPLY = 75,
1911d519adbfSMatthew Knepley   MATOP_SET_FROM_OPTIONS  = 76,
1912e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_77=77, */
1913e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_78=78, */
19149d39f69dSJed Brown   MATOP_FIND_ZERO_DIAGONALS       = 79,
1915d519adbfSMatthew Knepley   MATOP_MULT_MULTIPLE             = 80,
1916d519adbfSMatthew Knepley   MATOP_SOLVE_MULTIPLE            = 81,
1917d519adbfSMatthew Knepley   MATOP_GET_INERTIA               = 82,
1918d519adbfSMatthew Knepley   MATOP_LOAD                      = 83,
1919d519adbfSMatthew Knepley   MATOP_IS_SYMMETRIC              = 84,
1920d519adbfSMatthew Knepley   MATOP_IS_HERMITIAN              = 85,
1921d519adbfSMatthew Knepley   MATOP_IS_STRUCTURALLY_SYMMETRIC = 86,
1922820469bcSHong Zhang   MATOP_SET_VALUES_BLOCKEDLOCAL   = 87,
1923b41ce5d5SBarry Smith   MATOP_CREATE_VECS               = 88,
1924e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_89=89, */
1925d519adbfSMatthew Knepley   MATOP_MAT_MULT_SYMBOLIC = 90,
1926d519adbfSMatthew Knepley   MATOP_MAT_MULT_NUMERIC  = 91,
1927e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_92=92, */
1928d519adbfSMatthew Knepley   MATOP_PTAP_SYMBOLIC = 93,
1929d519adbfSMatthew Knepley   MATOP_PTAP_NUMERIC  = 94,
1930e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_95=95, */
1931bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96,
1932bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_NUMER = 97,
1933e5f2d425SStefano Zampini   MATOP_BIND_TO_CPU              = 98,
19347a3c3d58SStefano Zampini   MATOP_PRODUCTSETFROMOPTIONS    = 99,
19357a3c3d58SStefano Zampini   MATOP_PRODUCTSYMBOLIC          = 100,
19367a3c3d58SStefano Zampini   MATOP_PRODUCTNUMERIC           = 101,
1937d519adbfSMatthew Knepley   MATOP_CONJUGATE                = 102,
1938e5f2d425SStefano Zampini   MATOP_VIEW_NATIVE              = 103,
1939d519adbfSMatthew Knepley   MATOP_SET_VALUES_ROW           = 104,
1940d519adbfSMatthew Knepley   MATOP_REAL_PART                = 105,
1941bda6c4cbSBarry Smith   MATOP_IMAGINARY_PART           = 106,
1942bda6c4cbSBarry Smith   MATOP_GET_ROW_UPPER_TRIANGULAR = 107,
1943bda6c4cbSBarry Smith   MATOP_RESTORE_ROW_UPPER_TRIANG = 108,
1944bda6c4cbSBarry Smith   MATOP_MAT_SOLVE                = 109,
194529eadf9eSStefano Zampini   MATOP_MAT_SOLVE_TRANSPOSE      = 110,
1946d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN              = 111,
19470e8d04f7SBarry Smith   MATOP_GET_COLUMN_VECTOR        = 112,
1948d519adbfSMatthew Knepley   MATOP_MISSING_DIAGONAL         = 113,
19490e8d04f7SBarry Smith   MATOP_GET_SEQ_NONZERO_STRUCTUR = 114,
195089c6957cSBarry Smith   MATOP_CREATE                   = 115,
195189c6957cSBarry Smith   MATOP_GET_GHOSTS               = 116,
19520e8d04f7SBarry Smith   MATOP_GET_LOCAL_SUB_MATRIX     = 117,
19530e8d04f7SBarry Smith   MATOP_RESTORE_LOCALSUB_MATRIX  = 118,
1954eeffb40dSHong Zhang   MATOP_MULT_DIAGONAL_BLOCK      = 119,
19550e8d04f7SBarry Smith   MATOP_HERMITIAN_TRANSPOSE      = 120,
19560e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANSPOSE = 121,
19570e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANS_ADD = 122,
19580e8d04f7SBarry Smith   MATOP_GET_MULTI_PROC_BLOCK     = 123,
19599d39f69dSJed Brown   MATOP_FIND_NONZERO_ROWS        = 124,
19600e8d04f7SBarry Smith   MATOP_GET_COLUMN_NORMS         = 125,
19619d39f69dSJed Brown   MATOP_INVERT_BLOCK_DIAGONAL    = 126,
1962e5f2d425SStefano Zampini   MATOP_INVERT_VBLOCK_DIAGONAL   = 127,
1963b41ce5d5SBarry Smith   MATOP_CREATE_SUB_MATRICES_MPI  = 128,
19642b8ad9a3SHong Zhang   MATOP_SET_VALUES_BATCH         = 129,
1965e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_130=130, */
19660e8d04f7SBarry Smith   MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131,
1967e9b602ebSSatish Balay   MATOP_TRANSPOSE_MAT_MULT_NUMER = 132,
19680e8d04f7SBarry Smith   MATOP_TRANSPOSE_COLORING_CREAT = 133,
19690e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_SPT = 134,
19700e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_DEN = 135,
1971e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_136=136, */
19720e8d04f7SBarry Smith   MATOP_RART_SYMBOLIC         = 137,
19730e8d04f7SBarry Smith   MATOP_RART_NUMERIC          = 138,
1974e09a3074SHong Zhang   MATOP_SET_BLOCK_SIZES       = 139,
1975f9426fe0SMark Adams   MATOP_AYPX                  = 140,
19761919a2e2SJed Brown   MATOP_RESIDUAL              = 141,
19779c8f2541SHong Zhang   MATOP_FDCOLORING_SETUP      = 142,
1978e5f2d425SStefano Zampini   MATOP_FIND_OFFBLOCK_ENTRIES = 143,
19792d033e1fSHong Zhang   MATOP_MPICONCATENATESEQ     = 144,
1980bb01b7b0SPatrick Sanan   MATOP_DESTROYSUBMATRICES    = 145,
1981e265f6d6SPatrick Sanan   MATOP_TRANSPOSE_SOLVE       = 146,
1982e265f6d6SPatrick Sanan   MATOP_GET_VALUES_LOCAL      = 147
1983fae171e0SBarry Smith } MatOperation;
19840c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void));
1985976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void));
1986976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *);
198794342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *);
1988d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatProductClear() (since version 3.14)") static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A)
1989d71ae5a4SJacob Faibussowitsch {
19909371c9d4SSatish Balay   return MatProductClear(A);
19919371c9d4SSatish Balay }
1992014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void));
1993014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void));
1994014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *);
1995800f99ffSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *));
1996db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType);
1997f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
1998f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
19990c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat);
2000b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType);
2001b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *);
2002112a2221SBarry Smith 
200390ace30eSBarry Smith /*
200490ace30eSBarry Smith    Codes for matrices stored on disk. By default they are
200590ace30eSBarry Smith    stored in a universal format. By changing the format with
20066a9046bcSBarry Smith    PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will
200790ace30eSBarry Smith    be stored in a way natural for the matrix, for example dense matrices
200890ace30eSBarry Smith    would be stored as dense. Matrices stored this way may only be
2009f4403165SShri Abhyankar    read into matrices of the same type.
201090ace30eSBarry Smith */
201190ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1
201290ace30eSBarry Smith 
2013014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal);
201475d48cdbSStefano Zampini 
20158546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType);
201675d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
201775d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool);
2018f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool);
2019014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *);
20203b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *);
2021014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat);
2022e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
202325ef9dfeSBarry Smith PETSC_EXTERN                PETSC_DEPRECATED_FUNCTION("Use the MatConvert() interface (since version 3.10)") PetscErrorCode MatISGetMPIXAIJ(Mat, MatReuse, Mat *);
20241f4e1ec7SBarry Smith 
2025d9274352SBarry Smith /*S
2026d9274352SBarry Smith      MatNullSpace - Object that removes a null space from a vector, i.e.
2027cb6b9846SMatthew Knepley          orthogonalizes the vector to a subspace
2028d9274352SBarry Smith 
2029f7a9e4ceSBarry Smith    Level: advanced
2030d9274352SBarry Smith 
20312ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()`
2032d9274352SBarry Smith S*/
203374637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace;
2034d9274352SBarry Smith 
2035014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *);
2036014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *);
2037014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *);
2038d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec);
2039014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *);
20405fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *);
20415fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace);
2042014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace);
2043014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace);
2044014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *);
2045014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *);
2046014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer);
2047014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **);
2048014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *);
204974637425SBarry Smith 
2050014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS);
2051014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal);
2052014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *);
20533f1d51d7SBarry Smith 
2054014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *);
2055014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *);
2056014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *);
2057c4f061fbSSatish Balay 
20580bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *);
20590bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *);
20600bacdadaSStefano Zampini 
2061d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatComputeOperator() (since version 3.12)") static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B)
2062d71ae5a4SJacob Faibussowitsch {
2063f22e26b7SPierre Jolivet   return MatComputeOperator(A, PETSC_NULLPTR, B);
20649371c9d4SSatish Balay }
2065d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatComputeOperatorTranspose() (since version 3.12)") static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B)
2066d71ae5a4SJacob Faibussowitsch {
2067f22e26b7SPierre Jolivet   return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B);
20689371c9d4SSatish Balay }
2069b0a32e0cSBarry Smith 
207049bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *);
207149bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *);
2072a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **);
2073a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2074a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **);
2075a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **);
2076a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **);
2077a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2078a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **);
2079a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **);
2080dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat);
2081dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]);
2082dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]);
2083910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *);
208449bd79ccSDebojyoti Ghosh 
2085014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec);
208604f1ad80SBarry Smith 
2087014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2088014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec);
2089014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *);
2090014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *));
2091014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec));
2092014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt);
2093014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat);
2094014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal);
2095014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt);
2096014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *);
2097014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]);
2098014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *);
2099014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *);
2100e884886fSBarry Smith 
21016370053bSBarry Smith /*S
21026370053bSBarry Smith     MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free
21036370053bSBarry Smith               Jacobian vector products
2104e884886fSBarry Smith 
21052ef1f0ffSBarry Smith     Level: developer
21062ef1f0ffSBarry Smith 
210795452b02SPatrick Sanan     Notes:
210887497f52SBarry Smith     `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure
21096370053bSBarry Smith 
21102ef1f0ffSBarry Smith      MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure
21116370053bSBarry Smith 
21122ef1f0ffSBarry Smith     This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator`
21136370053bSBarry Smith 
21142ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`,
21152ef1f0ffSBarry Smith           `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator`
21166370053bSBarry Smith S*/
2117e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD;
2118e884886fSBarry Smith 
211976bdecfbSBarry Smith /*J
21202ef1f0ffSBarry Smith     MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function
2121e884886fSBarry Smith 
2122e884886fSBarry Smith    Level: beginner
2123e884886fSBarry Smith 
21242ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()`
212576bdecfbSBarry Smith J*/
212619fd82e9SBarry Smith typedef const char *MatMFFDType;
2127e884886fSBarry Smith #define MATMFFD_DS "ds"
2128e884886fSBarry Smith #define MATMFFD_WP "wp"
2129e884886fSBarry Smith 
213019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType);
2131bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD));
2132e884886fSBarry Smith 
2133014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal);
2134014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool);
2135e884886fSBarry Smith 
213661ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType);
213761ab5df0SBarry Smith 
2138014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *);
2139014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *);
21407dbadf16SMatthew Knepley 
214153022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS
214253022affSStefano Zampini PETSC_EXTERN_TYPEDEF typedef PetscScalar (*MatH2OpusKernel)(PetscInt, PetscReal[], PetscReal[], void *);
214353022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernel, void *, PetscReal, PetscInt, PetscInt, Mat *);
214453022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *);
214553022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal);
214653022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat);
214753022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal);
214853022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool);
214953022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *);
215053022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *);
215153022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *);
2152300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar);
2153a0d2e7d8SStefano Zampini #endif
2154a0d2e7d8SStefano Zampini 
2155c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL
215698e73e17SPierre Jolivet PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatHtoolKernel)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *);
2157c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernel, void *, Mat *);
2158c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernel, void *);
215998e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *);
216098e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *);
216198e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool);
21622ef1f0ffSBarry Smith 
2163c7a4214aSPierre Jolivet /*E
216487497f52SBarry Smith      MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL`
2165c7a4214aSPierre Jolivet 
21662ef1f0ffSBarry Smith    Level: intermediate
2167c7a4214aSPierre Jolivet 
2168c7a4214aSPierre Jolivet     Values:
216987497f52SBarry Smith +   `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation
217087497f52SBarry Smith .   `MAT_HTOOL_COMPRESSOR_FULL_ACA` - full adaptive cross approximation
217187497f52SBarry Smith -   `MAT_HTOOL_COMPRESSOR_SVD` - singular value decomposition
2172c7a4214aSPierre Jolivet 
21732ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType`
2174c7a4214aSPierre Jolivet E*/
21759371c9d4SSatish Balay typedef enum {
21769371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA,
21779371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_FULL_ACA,
21789371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SVD
21799371c9d4SSatish Balay } MatHtoolCompressorType;
21802ef1f0ffSBarry Smith 
218198e73e17SPierre Jolivet /*E
218287497f52SBarry Smith      MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL`
218398e73e17SPierre Jolivet 
21842ef1f0ffSBarry Smith    Level: intermediate
218598e73e17SPierre Jolivet 
218698e73e17SPierre Jolivet     Values:
218787497f52SBarry Smith +   `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default) - axis computed via principle component analysis, split uniformly
218887497f52SBarry Smith .   `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC` - axis computed via principle component analysis, split barycentrically
218987497f52SBarry Smith .   `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR` - axis along the largest extent of the bounding box, split uniformly
219087497f52SBarry Smith -   `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically
219198e73e17SPierre Jolivet 
21922ef1f0ffSBarry Smith     Note:
21932ef1f0ffSBarry Smith     Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types
219498e73e17SPierre Jolivet 
21952ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType`
219698e73e17SPierre Jolivet E*/
21979371c9d4SSatish Balay typedef enum {
21989371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_REGULAR,
21999371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC,
22009371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR,
22019371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC
22029371c9d4SSatish Balay } MatHtoolClusteringType;
2203c7a4214aSPierre Jolivet #endif
2204c7a4214aSPierre Jolivet 
220597969023SHong Zhang #ifdef PETSC_HAVE_MUMPS
2206014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt);
2207bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *);
2208b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal);
2209bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *);
2210bc6112feSHong Zhang 
2211ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *);
2212ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *);
2213ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *);
2214ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *);
22155c0bae8cSAshish Patel PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **);
221689a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat);
22170e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat);
221897969023SHong Zhang #endif
221923a5497aSJed Brown 
2220b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO
2221d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt);
2222b500a6b7SJose David Bermeol #endif
2223b500a6b7SJose David Bermeol 
2224d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO
2225d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt);
2226d305a81bSVasiliy Kozyrev #endif
2227d305a81bSVasiliy Kozyrev 
2228d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU
2229014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal);
2230d954db57SHong Zhang #endif
2231d954db57SHong Zhang 
2232fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST
2233fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *);
2234fb785984SHong Zhang #endif
2235fb785984SHong Zhang 
2236575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK
2237542aee0fSPieter Ghysels /*E
22382ef1f0ffSBarry Smith     MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK``
2239542aee0fSPieter Ghysels 
2240542aee0fSPieter Ghysels     Level: intermediate
22412ef1f0ffSBarry Smith 
22422ef1f0ffSBarry Smith     Values:
22432ef1f0ffSBarry Smith +  `MAT_STRUMPACK_NATURAL` - use the current ordering
22442ef1f0ffSBarry Smith .  `MAT_STRUMPACK_METIS` - use MeTis to compute an ordering
22452ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PARMETIS` - use ParMeTis to compute an ordering
22462ef1f0ffSBarry Smith .  `MAT_STRUMPACK_SCOTCH` - use Scotch to compute an ordering
22472ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PTSCOTCH` - use parallel Scotch to compute an ordering
22482ef1f0ffSBarry Smith -  `MAT_STRUMPACK_RCM` - use an RCM ordering
22492ef1f0ffSBarry Smith 
22502ef1f0ffSBarry Smith     Developer Note:
22512ef1f0ffSBarry Smith     Should be called `MatSTRUMPACKReorderingType`
22522ef1f0ffSBarry Smith 
22532ef1f0ffSBarry Smith .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetHSSRelTol()`, `MatSTRUMPACKSetReordering()`
2254542aee0fSPieter Ghysels E*/
22559371c9d4SSatish Balay typedef enum {
22569371c9d4SSatish Balay   MAT_STRUMPACK_NATURAL  = 0,
225734f43fa5SPieter Ghysels   MAT_STRUMPACK_METIS    = 1,
225834f43fa5SPieter Ghysels   MAT_STRUMPACK_PARMETIS = 2,
225934f43fa5SPieter Ghysels   MAT_STRUMPACK_SCOTCH   = 3,
226034f43fa5SPieter Ghysels   MAT_STRUMPACK_PTSCOTCH = 4,
22619371c9d4SSatish Balay   MAT_STRUMPACK_RCM      = 5
22629371c9d4SSatish Balay } MatSTRUMPACKReordering;
22632ef1f0ffSBarry Smith 
226434f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering);
2265575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool);
226634f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSRelTol(Mat, PetscReal);
2267d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSTRUMPACKSetHSSRelTol() (since version 3.9)") static inline PetscErrorCode MatSTRUMPACKSetHSSRelCompTol(Mat mat, PetscReal rtol)
2268d71ae5a4SJacob Faibussowitsch {
22699371c9d4SSatish Balay   return MatSTRUMPACKSetHSSRelTol(mat, rtol);
22709371c9d4SSatish Balay }
227134f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSAbsTol(Mat, PetscReal);
227234f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMinSepSize(Mat, PetscInt);
2273d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSTRUMPACKSetHSSMinSepSize() (since version 3.9)") static inline PetscErrorCode MatSTRUMPACKSetHSSMinSize(Mat mat, PetscInt hssminsize)
2274d71ae5a4SJacob Faibussowitsch {
22759371c9d4SSatish Balay   return MatSTRUMPACKSetHSSMinSepSize(mat, hssminsize);
22769371c9d4SSatish Balay }
227734f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMaxRank(Mat, PetscInt);
2278a36bf211SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSLeafSize(Mat, PetscInt);
2279575704cbSPieter Ghysels #endif
2280575704cbSPieter Ghysels 
2281b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool);
22822216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *);
2283d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatBindToCPU (since v3.13)") static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg)
2284d71ae5a4SJacob Faibussowitsch {
22859371c9d4SSatish Balay   return MatBindToCPU(A, flg);
22869371c9d4SSatish Balay }
228765a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool);
2288e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *);
2289e7e92044SBarry Smith 
2290042217e8SBarry Smith typedef struct _n_SplitCSRMat *PetscSplitCSRDataStructure;
2291042217e8SBarry Smith PETSC_EXTERN PetscErrorCode    MatCUSPARSEGetDeviceMatWrite(Mat, PetscSplitCSRDataStructure *);
2292a587d139SMark 
2293a587d139SMark #ifdef PETSC_HAVE_KOKKOS_KERNELS
2294042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatKokkosGetDeviceMatWrite(Mat, PetscSplitCSRDataStructure *);
2295042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJKokkosSetDeviceMat(Mat, PetscSplitCSRDataStructure);
2296042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJKokkosGetDeviceMat(Mat, PetscSplitCSRDataStructure *);
2297a587d139SMark #endif
2298a587d139SMark 
2299aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA
23003f9c0db1SPaul Mullowney /*E
23012ef1f0ffSBarry Smith     MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU)
23022692e278SPaul Mullowney     matrices.
2303e057df02SPaul Mullowney 
23042ef1f0ffSBarry Smith     Values:
230587497f52SBarry Smith +   `MAT_CUSPARSE_CSR` - Compressed Sparse Row
230687497f52SBarry Smith .   `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later).
230787497f52SBarry Smith -   `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later).
2308e057df02SPaul Mullowney 
2309e057df02SPaul Mullowney     Level: intermediate
2310e057df02SPaul Mullowney 
23112ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation`
2312e057df02SPaul Mullowney E*/
2313e057df02SPaul Mullowney 
23149371c9d4SSatish Balay typedef enum {
23159371c9d4SSatish Balay   MAT_CUSPARSE_CSR,
23169371c9d4SSatish Balay   MAT_CUSPARSE_ELL,
23179371c9d4SSatish Balay   MAT_CUSPARSE_HYB
23189371c9d4SSatish Balay } MatCUSPARSEStorageFormat;
2319e057df02SPaul Mullowney 
2320e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */
2321e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[];
2322e057df02SPaul Mullowney 
23233f9c0db1SPaul Mullowney /*E
23242ef1f0ffSBarry Smith     MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU)
23252692e278SPaul Mullowney     matrices whose operation should use a particular storage format.
2326e057df02SPaul Mullowney 
23272ef1f0ffSBarry Smith     Values:
232887497f52SBarry Smith +   `MAT_CUSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel MatMult
232987497f52SBarry Smith .   `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel MatMult
233087497f52SBarry Smith .   `MAT_CUSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) MatMult
23312ef1f0ffSBarry Smith -   `MAT_CUSPARSE_ALL` - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices
2332e057df02SPaul Mullowney 
2333e057df02SPaul Mullowney     Level: intermediate
2334e057df02SPaul Mullowney 
23352ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat`
2336e057df02SPaul Mullowney E*/
23379371c9d4SSatish Balay typedef enum {
23389371c9d4SSatish Balay   MAT_CUSPARSE_MULT_DIAG,
23399371c9d4SSatish Balay   MAT_CUSPARSE_MULT_OFFDIAG,
23409371c9d4SSatish Balay   MAT_CUSPARSE_MULT,
23419371c9d4SSatish Balay   MAT_CUSPARSE_ALL
23429371c9d4SSatish Balay } MatCUSPARSEFormatOperation;
2343e057df02SPaul Mullowney 
234410e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
234510e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2346e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat);
2347365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool);
23485f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
23495f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
23505f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **);
23515f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **);
23525f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **);
23535f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **);
23545f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **);
23555f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **);
2356637a0070SStefano Zampini 
2357637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
2358637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
2359637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **);
2360637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **);
2361637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **);
2362637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **);
2363637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **);
2364637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **);
2365637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *);
2366d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *);
2367637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat);
23682d1451d4SHong Zhang 
23692d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
23702d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
23719ae82921SPaul Mullowney #endif
23729ae82921SPaul Mullowney 
237347d993e7Ssuyashtn #ifdef PETSC_HAVE_HIP
237447d993e7Ssuyashtn /*E
23752ef1f0ffSBarry Smith     MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU)
237647d993e7Ssuyashtn     matrices.
237747d993e7Ssuyashtn 
237847d993e7Ssuyashtn     Level: intermediate
237947d993e7Ssuyashtn 
23802ef1f0ffSBarry Smith     Values:
23812ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_CSR` - Compressed Sparse Row
23822ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_ELL` - Ellpack
23832ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format
238447d993e7Ssuyashtn 
23852ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation`
238647d993e7Ssuyashtn E*/
238747d993e7Ssuyashtn 
238847d993e7Ssuyashtn typedef enum {
238947d993e7Ssuyashtn   MAT_HIPSPARSE_CSR,
239047d993e7Ssuyashtn   MAT_HIPSPARSE_ELL,
239147d993e7Ssuyashtn   MAT_HIPSPARSE_HYB
239247d993e7Ssuyashtn } MatHIPSPARSEStorageFormat;
239347d993e7Ssuyashtn 
239447d993e7Ssuyashtn /* these will be strings associated with enumerated type defined above */
239547d993e7Ssuyashtn PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[];
239647d993e7Ssuyashtn 
239747d993e7Ssuyashtn /*E
23982ef1f0ffSBarry Smith     MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU)
239947d993e7Ssuyashtn     matrices whose operation should use a particular storage format.
240047d993e7Ssuyashtn 
240147d993e7Ssuyashtn     Level: intermediate
240247d993e7Ssuyashtn 
24032ef1f0ffSBarry Smith     Values:
24042ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()`
24052ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel `MatMul()t`
24062ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()`
24072ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_ALL` - sets the storage format for all HIPSPARSE (GPU) matrices
24082ef1f0ffSBarry Smith 
24092ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat`
241047d993e7Ssuyashtn E*/
241147d993e7Ssuyashtn typedef enum {
241247d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_DIAG,
241347d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_OFFDIAG,
241447d993e7Ssuyashtn   MAT_HIPSPARSE_MULT,
241547d993e7Ssuyashtn   MAT_HIPSPARSE_ALL
241647d993e7Ssuyashtn } MatHIPSPARSEFormatOperation;
241747d993e7Ssuyashtn 
241847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
241947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
242047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat);
242147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool);
242247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
242347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
242447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **);
242547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **);
242647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **);
242747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **);
242847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **);
242947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **);
243047d993e7Ssuyashtn 
243147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
243247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
243347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **);
243447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **);
243547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **);
243647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **);
243747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **);
243847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **);
243947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *);
244047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *);
244147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat);
244247d993e7Ssuyashtn #endif
244347d993e7Ssuyashtn 
2444d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL)
2445d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2446d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2447d67ff14aSKarl Rupp #endif
2448d67ff14aSKarl Rupp 
244954efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW)
2450014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec);
2451014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec);
24522a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *);
245354efbe56SHong Zhang #endif
245454efbe56SHong Zhang 
2455d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
2456d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2457d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt);
2458d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *);
2459d24d4204SJose E. Roman #endif
2460d24d4204SJose E. Roman 
2461014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *);
2462014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *);
2463014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]);
2464014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]);
2465014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***);
2466014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *);
246719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType);
2468014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]);
2469014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat);
2470d8588912SDave May 
24714325cce7SMatthew G Knepley PETSC_EXTERN PetscErrorCode MatChop(Mat, PetscReal);
2472e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *);
24734325cce7SMatthew G Knepley 
2474b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **);
247553dd7562SDmitry Karpeev 
2476c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat);
2477c094ef40SMatthew G. Knepley 
2478539c167fSBarry Smith PETSC_INTERN PetscErrorCode MatHeaderMerge(Mat, Mat *);
2479539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *);
24801a2c6b5cSJunchao Zhang 
24817ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *);
248272833a62Smarkadams4 
24832d776b49SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, Mat *);
2484dec0b466SHong Zhang PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat);
2485ad6ad4e1SHansol  Suh 
2486ad6ad4e1SHansol  Suh PETSC_EXTERN PetscErrorCode VecCreateMatDense(Vec, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *);
248723a5497aSJed Brown #endif
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