xref: /petsc/include/petscmat.h (revision 0b4b7b1c20c2ed4ade67e3d50a7710fe0ffbfca5)
12eac72dbSBarry Smith /*
22eac72dbSBarry Smith      Include file for the matrix component of PETSc
32eac72dbSBarry Smith */
4a4963045SJacob Faibussowitsch #pragma once
5ac09b921SBarry Smith 
62c8e378dSBarry Smith #include <petscvec.h>
72eac72dbSBarry Smith 
8ac09b921SBarry Smith /* SUBMANSEC = Mat */
9ac09b921SBarry Smith 
10d9274352SBarry Smith /*S
118f6c3df8SBarry Smith    Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without
12af27ebaaSBarry Smith          an explicit sparse representation (such as matrix-free operators). Also used to hold representations of graphs
13af27ebaaSBarry Smith          for graph operations such as coloring, `MatColoringCreate()`
142eac72dbSBarry Smith 
15d91e6319SBarry Smith    Level: beginner
16d91e6319SBarry Smith 
172ef1f0ffSBarry Smith    Note:
181cc06b55SBarry Smith    See [](doc_matrix), [](ch_matrices) and `MatType` for available matrix types
192ef1f0ffSBarry Smith 
201cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()`
21d9274352SBarry Smith S*/
22d9274352SBarry Smith typedef struct _p_Mat *Mat;
23d9274352SBarry Smith 
2476bdecfbSBarry Smith /*J
25*0b4b7b1cSBarry Smith    MatType - String with the name of a PETSc matrix type. These are all the matrix formats that PETSc provides.
26d9274352SBarry Smith 
27d9274352SBarry Smith    Level: beginner
28d9274352SBarry Smith 
29*0b4b7b1cSBarry Smith    Notes:
302ef1f0ffSBarry Smith    [](doc_matrix) for a table of available matrix types
312ef1f0ffSBarry Smith 
32*0b4b7b1cSBarry Smith    Use `MatSetType()` or the options database keys `-mat_type` or `dm_mat_type` to set the matrix format to use for a given `Mat`
33*0b4b7b1cSBarry Smith 
341cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()`
3576bdecfbSBarry Smith J*/
3619fd82e9SBarry Smith typedef const char *MatType;
37273d9f13SBarry Smith #define MATSAME                      "same"
385a11e1b2SBarry Smith #define MATMAIJ                      "maij"
39273d9f13SBarry Smith #define MATSEQMAIJ                   "seqmaij"
40273d9f13SBarry Smith #define MATMPIMAIJ                   "mpimaij"
4149bd79ccSDebojyoti Ghosh #define MATKAIJ                      "kaij"
4249bd79ccSDebojyoti Ghosh #define MATSEQKAIJ                   "seqkaij"
4349bd79ccSDebojyoti Ghosh #define MATMPIKAIJ                   "mpikaij"
44273d9f13SBarry Smith #define MATIS                        "is"
455a11e1b2SBarry Smith #define MATAIJ                       "aij"
46273d9f13SBarry Smith #define MATSEQAIJ                    "seqaij"
47273d9f13SBarry Smith #define MATMPIAIJ                    "mpiaij"
485a11e1b2SBarry Smith #define MATAIJCRL                    "aijcrl"
495a11e1b2SBarry Smith #define MATSEQAIJCRL                 "seqaijcrl"
505a11e1b2SBarry Smith #define MATMPIAIJCRL                 "mpiaijcrl"
519ae82921SPaul Mullowney #define MATAIJCUSPARSE               "aijcusparse"
529ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE            "seqaijcusparse"
539ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE            "mpiaijcusparse"
5447d993e7Ssuyashtn #define MATAIJHIPSPARSE              "aijhipsparse"
5547d993e7Ssuyashtn #define MATSEQAIJHIPSPARSE           "seqaijhipsparse"
5647d993e7Ssuyashtn #define MATMPIAIJHIPSPARSE           "mpiaijhipsparse"
578c3ff71bSJunchao Zhang #define MATAIJKOKKOS                 "aijkokkos"
588c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS              "seqaijkokkos"
598c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS              "mpiaijkokkos"
60d67ff14aSKarl Rupp #define MATAIJVIENNACL               "aijviennacl"
61d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL            "seqaijviennacl"
62d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL            "mpiaijviennacl"
635a11e1b2SBarry Smith #define MATAIJPERM                   "aijperm"
645a11e1b2SBarry Smith #define MATSEQAIJPERM                "seqaijperm"
655a11e1b2SBarry Smith #define MATMPIAIJPERM                "mpiaijperm"
664dfdc2d9SRichard Tran Mills #define MATAIJSELL                   "aijsell"
674dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL                "seqaijsell"
684dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL                "mpiaijsell"
694a2a386eSRichard Tran Mills #define MATAIJMKL                    "aijmkl"
704a2a386eSRichard Tran Mills #define MATSEQAIJMKL                 "seqaijmkl"
714a2a386eSRichard Tran Mills #define MATMPIAIJMKL                 "mpiaijmkl"
72b5b72c8aSIrina Sokolova #define MATBAIJMKL                   "baijmkl"
73b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL                "seqbaijmkl"
74b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL                "mpibaijmkl"
75273d9f13SBarry Smith #define MATSHELL                     "shell"
76c1fff1c6SRichard Tran Mills #define MATCENTERING                 "centering"
775a11e1b2SBarry Smith #define MATDENSE                     "dense"
78637a0070SStefano Zampini #define MATDENSECUDA                 "densecuda"
7947d993e7Ssuyashtn #define MATDENSEHIP                  "densehip"
80209238afSKris Buschelman #define MATSEQDENSE                  "seqdense"
81bfc799aaSStefano Zampini #define MATSEQDENSECUDA              "seqdensecuda"
8247d993e7Ssuyashtn #define MATSEQDENSEHIP               "seqdensehip"
83273d9f13SBarry Smith #define MATMPIDENSE                  "mpidense"
84637a0070SStefano Zampini #define MATMPIDENSECUDA              "mpidensecuda"
8547d993e7Ssuyashtn #define MATMPIDENSEHIP               "mpidensehip"
86db31f6deSJed Brown #define MATELEMENTAL                 "elemental"
87d24d4204SJose E. Roman #define MATSCALAPACK                 "scalapack"
885a11e1b2SBarry Smith #define MATBAIJ                      "baij"
89273d9f13SBarry Smith #define MATSEQBAIJ                   "seqbaij"
90273d9f13SBarry Smith #define MATMPIBAIJ                   "mpibaij"
91273d9f13SBarry Smith #define MATMPIADJ                    "mpiadj"
925a11e1b2SBarry Smith #define MATSBAIJ                     "sbaij"
93273d9f13SBarry Smith #define MATSEQSBAIJ                  "seqsbaij"
94273d9f13SBarry Smith #define MATMPISBAIJ                  "mpisbaij"
95cebc7f6cSBarry Smith #define MATMFFD                      "mffd"
96c8a8475eSBarry Smith #define MATNORMAL                    "normal"
97c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN           "normalh"
98ab92ecdeSBarry Smith #define MATLRC                       "lrc"
992a6744ebSBarry Smith #define MATSCATTER                   "scatter"
100421e10b8SBarry Smith #define MATBLOCKMAT                  "blockmat"
101793850ffSBarry Smith #define MATCOMPOSITE                 "composite"
1021f8c7532SHong Zhang #define MATFFT                       "fft"
1031f8c7532SHong Zhang #define MATFFTW                      "fftw"
104e133240eSMatthew G Knepley #define MATSEQCUFFT                  "seqcufft"
10547d993e7Ssuyashtn #define MATSEQHIPFFT                 "seqhipfft"
106edd03b47SJacob Faibussowitsch #define MATTRANSPOSEMAT              PETSC_DEPRECATED_MACRO(3, 18, 0, "MATTRANSPOSEVIRTUAL", ) "transpose"
107013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL          "transpose"
108013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose"
10972ca8751SBarry Smith #define MATSCHURCOMPLEMENT           "schurcomplement"
1101d6018f0SLisandro Dalcin #define MATPYTHON                    "python"
11163c07aadSStefano Zampini #define MATHYPRE                     "hypre"
112f91d8e95SBarry Smith #define MATHYPRESTRUCT               "hyprestruct"
113a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT              "hypresstruct"
114ee1cef2cSJed Brown #define MATSUBMATRIX                 "submatrix"
1152c0dbf93SJed Brown #define MATLOCALREF                  "localref"
116d8588912SDave May #define MATNEST                      "nest"
117c094ef40SMatthew G. Knepley #define MATPREALLOCATOR              "preallocator"
118d4002b98SHong Zhang #define MATSELL                      "sell"
119d4002b98SHong Zhang #define MATSEQSELL                   "seqsell"
120d4002b98SHong Zhang #define MATMPISELL                   "mpisell"
1212d1451d4SHong Zhang #define MATSELLCUDA                  "sellcuda"
1222d1451d4SHong Zhang #define MATSEQSELLCUDA               "seqsellcuda"
1232d1451d4SHong Zhang #define MATMPISELLCUDA               "mpisellcuda"
124773bf0f6SHong Zhang #define MATSELLHIP                   "sellhip"
125773bf0f6SHong Zhang #define MATSEQSELLHIP                "seqsellhip"
126773bf0f6SHong Zhang #define MATMPISELLHIP                "mpisellhip"
127a3b2e22bSHong Zhang #define MATDUMMY                     "dummy"
128cd929ea3SAlp Dener #define MATLMVM                      "lmvm"
12978e4361aSAlp Dener #define MATLMVMDFP                   "lmvmdfp"
130bbb72809SHansol Suh #define MATLMVMDDFP                  "lmvmddfp"
13178e4361aSAlp Dener #define MATLMVMBFGS                  "lmvmbfgs"
132bbb72809SHansol Suh #define MATLMVMDBFGS                 "lmvmdbfgs"
133bbb72809SHansol Suh #define MATLMVMDQN                   "lmvmdqn"
13478e4361aSAlp Dener #define MATLMVMSR1                   "lmvmsr1"
135864588a7SAlp Dener #define MATLMVMBROYDEN               "lmvmbroyden"
136864588a7SAlp Dener #define MATLMVMBADBROYDEN            "lmvmbadbroyden"
137864588a7SAlp Dener #define MATLMVMSYMBROYDEN            "lmvmsymbroyden"
138864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN         "lmvmsymbadbroyden"
139864588a7SAlp Dener #define MATLMVMDIAGBROYDEN           "lmvmdiagbroyden"
1403423f386SBarry Smith #define MATCONSTANTDIAGONAL          "constantdiagonal"
141345a4b08SToby Isaac #define MATDIAGONAL                  "diagonal"
142c7a4214aSPierre Jolivet #define MATHTOOL                     "htool"
14353022affSStefano Zampini #define MATH2OPUS                    "h2opus"
144773941d6SBarry Smith 
14576bdecfbSBarry Smith /*J
146af27ebaaSBarry Smith    MatSolverType - String with the name of a PETSc factorization-based matrix solver type.
1479989ab13SBarry Smith 
148c2b89b5dSBarry Smith    For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc
1499989ab13SBarry Smith 
1509989ab13SBarry Smith    Level: beginner
1519989ab13SBarry Smith 
1522ef1f0ffSBarry Smith    Note:
15316a05f60SBarry Smith    `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as
15416a05f60SBarry Smith    a ./configure option to install them
155c7ccbb75SBarry Smith 
1561cc06b55SBarry Smith .seealso: [](sec_matfactor), [](ch_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()`
15776bdecfbSBarry Smith J*/
158ea799195SBarry Smith typedef const char *MatSolverType;
1592692d6eeSBarry Smith #define MATSOLVERSUPERLU      "superlu"
1602692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST "superlu_dist"
16108f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK    "strumpack"
1622692d6eeSBarry Smith #define MATSOLVERUMFPACK      "umfpack"
16320db9a53SJed Brown #define MATSOLVERCHOLMOD      "cholmod"
164d89f5e7aSBarry Smith #define MATSOLVERKLU          "klu"
165d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL    "elemental"
166d24d4204SJose E. Roman #define MATSOLVERSCALAPACK    "scalapack"
1672692d6eeSBarry Smith #define MATSOLVERESSL         "essl"
1682692d6eeSBarry Smith #define MATSOLVERLUSOL        "lusol"
1692692d6eeSBarry Smith #define MATSOLVERMUMPS        "mumps"
170d615f992SSatish Balay #define MATSOLVERMKL_PARDISO  "mkl_pardiso"
171d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO "mkl_cpardiso"
1722692d6eeSBarry Smith #define MATSOLVERPASTIX       "pastix"
1732692d6eeSBarry Smith #define MATSOLVERMATLAB       "matlab"
1742692d6eeSBarry Smith #define MATSOLVERPETSC        "petsc"
1752692d6eeSBarry Smith #define MATSOLVERBAS          "bas"
1769ae82921SPaul Mullowney #define MATSOLVERCUSPARSE     "cusparse"
177bfc799aaSStefano Zampini #define MATSOLVERCUDA         "cuda"
17847d993e7Ssuyashtn #define MATSOLVERHIPSPARSE    "hipsparse"
17947d993e7Ssuyashtn #define MATSOLVERHIP          "hip"
180930e68a5SMark Adams #define MATSOLVERKOKKOS       "kokkos"
181a2fc1e05SToby Isaac #define MATSOLVERSPQR         "spqr"
1821dd4f53aSPierre Jolivet #define MATSOLVERHTOOL        "htool"
183c0cdd4a1SDahai Guo 
184b24902e0SBarry Smith /*E
185b24902e0SBarry Smith     MatFactorType - indicates what type of factorization is requested
186b24902e0SBarry Smith 
1872ef1f0ffSBarry Smith     Values:
1882ef1f0ffSBarry Smith +  `MAT_FACTOR_LU`       - LU factorization
1892ef1f0ffSBarry Smith .  `MAT_FACTOR_CHOLESKY` - Cholesky factorization
1902ef1f0ffSBarry Smith .  `MAT_FACTOR_ILU`      - ILU factorization
1912ef1f0ffSBarry Smith .  `MAT_FACTOR_ICC`      - incomplete Cholesky factorization
1922ef1f0ffSBarry Smith .  `MAT_FACTOR_ILUDT`    - ILU factorization with drop tolerance
1932ef1f0ffSBarry Smith -  `MAT_FACTOR_QR`       - QR factorization
194b24902e0SBarry Smith 
19516a05f60SBarry Smith     Level: beginner
19616a05f60SBarry Smith 
1971cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()`
198b24902e0SBarry Smith E*/
1999371c9d4SSatish Balay typedef enum {
2009371c9d4SSatish Balay   MAT_FACTOR_NONE,
2019371c9d4SSatish Balay   MAT_FACTOR_LU,
2029371c9d4SSatish Balay   MAT_FACTOR_CHOLESKY,
2039371c9d4SSatish Balay   MAT_FACTOR_ILU,
2049371c9d4SSatish Balay   MAT_FACTOR_ICC,
2059371c9d4SSatish Balay   MAT_FACTOR_ILUDT,
2069371c9d4SSatish Balay   MAT_FACTOR_QR,
2079371c9d4SSatish Balay   MAT_FACTOR_NUM_TYPES
2089371c9d4SSatish Balay } MatFactorType;
209014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[];
210e92e720dSBarry Smith 
211ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *);
212ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *);
213f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *);
214edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 15, 0, "MatFactorGetCanUseOrdering()", ) static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b)
215d71ae5a4SJacob Faibussowitsch {
2169371c9d4SSatish Balay   return MatFactorGetCanUseOrdering(A, b);
2179371c9d4SSatish Balay }
218ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *);
219014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *);
2207abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType);
2218434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode(MatSolverFn)(Mat, MatFactorType, Mat *);
2228434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatSolverFn *MatSolverFunction;
22307e0ed13SBarry Smith 
2248434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFn *);
2258434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFn **);
226edd03b47SJacob Faibussowitsch typedef MatSolverType       MatSolverPackage PETSC_DEPRECATED_TYPEDEF(3, 9, 0, "MatSolverType", );
2278434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeRegister()", ) static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFn *f)
228d71ae5a4SJacob Faibussowitsch {
2299371c9d4SSatish Balay   return MatSolverTypeRegister(stype, mtype, ftype, f);
2309371c9d4SSatish Balay }
2318434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeGet()", ) static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFn **f)
232d71ae5a4SJacob Faibussowitsch {
2339371c9d4SSatish Balay   return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f);
2349371c9d4SSatish Balay }
2359989ab13SBarry Smith 
2364222ddf1SHong Zhang /*E
23795bd0b28SBarry Smith     MatProductType - indicates what type of matrix product to compute
2384222ddf1SHong Zhang 
2392ef1f0ffSBarry Smith     Values:
2402ef1f0ffSBarry Smith +  `MATPRODUCT_AB`   - product of two matrices
2412ef1f0ffSBarry Smith .  `MATPRODUCT_AtB`  - product of the transpose of a given matrix with a matrix
2422ef1f0ffSBarry Smith .  `MATPRODUCT_ABt`  - product of a matrix with the transpose of another given matrix
2432ef1f0ffSBarry Smith .  `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself
2442ef1f0ffSBarry Smith .  `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix
2452ef1f0ffSBarry Smith -  `MATPRODUCT_ABC`  - the product of three matrices
2462ef1f0ffSBarry Smith 
24716a05f60SBarry Smith     Level: beginner
24816a05f60SBarry Smith 
2491cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatProductSetType()`
2504222ddf1SHong Zhang E*/
2519371c9d4SSatish Balay typedef enum {
2529371c9d4SSatish Balay   MATPRODUCT_UNSPECIFIED = 0,
2539371c9d4SSatish Balay   MATPRODUCT_AB,
2549371c9d4SSatish Balay   MATPRODUCT_AtB,
2559371c9d4SSatish Balay   MATPRODUCT_ABt,
2569371c9d4SSatish Balay   MATPRODUCT_PtAP,
2579371c9d4SSatish Balay   MATPRODUCT_RARt,
2589371c9d4SSatish Balay   MATPRODUCT_ABC
2599371c9d4SSatish Balay } MatProductType;
260544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[];
2614222ddf1SHong Zhang 
2624222ddf1SHong Zhang /*J
2634222ddf1SHong Zhang     MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation
2644222ddf1SHong Zhang 
2654222ddf1SHong Zhang    Level: beginner
2664222ddf1SHong Zhang 
2671cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType`
2684222ddf1SHong Zhang J*/
2694222ddf1SHong Zhang typedef const char *MatProductAlgorithm;
2703e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT         "default"
2713e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED          "sorted"
2723e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE        "scalable"
2733e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST    "scalable_fast"
2743e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP            "heap"
2753e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP           "btheap"
2763e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED     "llcondensed"
2773e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE        "rowmerge"
2783e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT    "outerproduct"
2793e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB             "at*b"
2803e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP             "rap"
2813e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE     "nonscalable"
2823e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI          "seqmpi"
2833e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND         "backend"
2843e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING     "overlapping"
2853e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED          "merged"
2863e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE       "allatonce"
2873e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged"
2883e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV      "allgatherv"
2893e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC          "cyclic"
2903e662e0bSHong Zhang #define MATPRODUCTALGORITHMHYPRE           "hypre"
2914222ddf1SHong Zhang 
2924222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *);
2934222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat);
2944222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType);
2954222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm);
2968fcac130SJose E. Roman PETSC_EXTERN PetscErrorCode MatProductGetAlgorithm(Mat, MatProductAlgorithm *);
2974222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal);
2984222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat);
2994222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat);
3004222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat);
3014222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat);
3024417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat);
3036718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer);
304c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *);
305c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *);
3064222ddf1SHong Zhang 
307c06d978dSMatthew Knepley /* Logging support */
3080700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */
309014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID;
310335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID;
311014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID;
312014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID;
313014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID;
314014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID;
315014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID;
316014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID;
317c06d978dSMatthew Knepley 
318ceb03754SKris Buschelman /*E
3192ef1f0ffSBarry Smith    MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions
320cf37664fSBarry Smith    are to be reused to store the new matrix values.
321cf37664fSBarry Smith 
3222ef1f0ffSBarry Smith    Values:
3232ef1f0ffSBarry Smith +  `MAT_INITIAL_MATRIX` - create a new matrix
3242ef1f0ffSBarry Smith .  `MAT_REUSE_MATRIX`   - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX`
3252ef1f0ffSBarry Smith .  `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions)
3262ef1f0ffSBarry Smith -  `MAT_IGNORE_MATRIX`  - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions)
327ceb03754SKris Buschelman 
328ceb03754SKris Buschelman     Level: beginner
329ceb03754SKris Buschelman 
3301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()`
331ceb03754SKris Buschelman E*/
3329371c9d4SSatish Balay typedef enum {
3339371c9d4SSatish Balay   MAT_INITIAL_MATRIX,
3349371c9d4SSatish Balay   MAT_REUSE_MATRIX,
3359371c9d4SSatish Balay   MAT_IGNORE_MATRIX,
3369371c9d4SSatish Balay   MAT_INPLACE_MATRIX
3379371c9d4SSatish Balay } MatReuse;
338ceb03754SKris Buschelman 
3395494a064SHong Zhang /*E
3402ef1f0ffSBarry Smith     MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()`
3412ef1f0ffSBarry Smith     include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`.
3425494a064SHong Zhang 
3432ef1f0ffSBarry Smith     Values:
3442ef1f0ffSBarry Smith +  `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values
3452ef1f0ffSBarry Smith -  `MAT_GET_VALUES`        - copy the matrix values
3462ef1f0ffSBarry Smith 
34795bd0b28SBarry Smith     Level: developer
34895bd0b28SBarry Smith 
3492ef1f0ffSBarry Smith     Developer Note:
3502ef1f0ffSBarry Smith     Why is not just a boolean used for this information?
3512ef1f0ffSBarry Smith 
3521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()`
3535494a064SHong Zhang E*/
3549371c9d4SSatish Balay typedef enum {
3559371c9d4SSatish Balay   MAT_DO_NOT_GET_VALUES,
3569371c9d4SSatish Balay   MAT_GET_VALUES
3579371c9d4SSatish Balay } MatCreateSubMatrixOption;
3585494a064SHong Zhang 
359607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void);
3604bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatFinalizePackage(void);
361c06d978dSMatthew Knepley 
362014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *);
36377433607SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFromOptions(MPI_Comm, const char *, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt);
36519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType);
3660d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *);
3670d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType);
368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat);
369fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]);
370bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat));
37123bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]);
372014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]);
37326cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]);
37426cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]);
375014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]);
376014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]);
3775d5d24bbSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatGetState(Mat, PetscObjectState *);
37884d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool);
379f69a0ea3SMatthew Knepley 
380140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList;
381140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList;
382140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList;
38328988994SBarry Smith 
3843b224e63SBarry Smith /*E
385aa6c7ce3SBarry Smith    MatStructure - Indicates if two matrices have the same nonzero structure
3863b224e63SBarry Smith 
3872ef1f0ffSBarry Smith    Values:
3882ef1f0ffSBarry Smith +  `SAME_NONZERO_PATTERN`      - the two matrices have identical nonzero patterns
3892ef1f0ffSBarry Smith .  `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns
3902ef1f0ffSBarry Smith .  `SUBSET_NONZERO_PATTERN`    - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix
3912ef1f0ffSBarry Smith -  `UNKNOWN_NONZERO_PATTERN`   - there is no known relationship between the nonzero patterns. In this case the implementations
3922ef1f0ffSBarry Smith                                  may try to detect a relationship to optimize the operation
393531d0c6aSBarry Smith 
39416a05f60SBarry Smith    Level: beginner
39516a05f60SBarry Smith 
396af27ebaaSBarry Smith    Note:
397af27ebaaSBarry Smith    Certain matrix operations (such as `MatAXPY()`) can run much faster if the sparsity pattern of the matrices are the same. But actually determining if
398af27ebaaSBarry Smith    the patterns are the same may be costly. This provides a way for users who know something about the sparsity patterns to provide this information
399af27ebaaSBarry Smith    to certain PETSc routines.
400af27ebaaSBarry Smith 
4011cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()`
4023b224e63SBarry Smith E*/
4039371c9d4SSatish Balay typedef enum {
4049371c9d4SSatish Balay   DIFFERENT_NONZERO_PATTERN,
4059371c9d4SSatish Balay   SUBSET_NONZERO_PATTERN,
4069371c9d4SSatish Balay   SAME_NONZERO_PATTERN,
4079371c9d4SSatish Balay   UNKNOWN_NONZERO_PATTERN
4089371c9d4SSatish Balay } MatStructure;
409d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[];
4103b224e63SBarry Smith 
4119779e05dSSatish Balay #if defined PETSC_HAVE_MKL_SPARSE
412ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
413ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
41480095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
415ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
41680095d54SIrina Sokolova #endif
417cd929ea3SAlp Dener 
4184bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
4194bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
4204bf303faSJacob Faibussowitsch 
421d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
422d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
423d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]);
424d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
42507e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *);
42607e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *);
42707e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *);
42807e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt);
429b921024eSHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *);
43080095d54SIrina Sokolova 
4314bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
4324bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
433fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
434fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetSeqSELL(Mat, Mat *, Mat *, const PetscInt *[]);
4354bf303faSJacob Faibussowitsch 
436014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
437014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
438014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
439014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
440014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4418f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4426a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]);
443014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *);
4443b00a383SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *);
4453b00a383SHong Zhang 
446014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
447014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
448014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4497e8381f9SStefano Zampini 
450e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]);
45182a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]);
4527e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode);
453d21a29f3SJed Brown 
454014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *);
455014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
456d21a29f3SJed Brown 
457014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
458014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
45938f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
460014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4614cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]);
462dfb205c3SBarry Smith 
463014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *);
464c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *);
465014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *);
466c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *);
467986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *);
468267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *);
469bcf2175cSMatthew Knepley PETSC_EXTERN PetscErrorCode MatLRCSetMats(Mat, Mat, Mat, Vec, Mat);
470c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *);
471014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
472014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
473c0cdd4a1SDahai Guo 
474014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *);
475014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter);
476014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *);
477014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *);
478014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat);
479014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat);
4809371c9d4SSatish Balay typedef enum {
4819371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_RIGHT,
4829371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_LEFT
4839371c9d4SSatish Balay } MatCompositeMergeType;
4848c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType);
485014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *);
4860da935d5SPierre Jolivet /*E
4870da935d5SPierre Jolivet     MatCompositeType - indicates what type of `MATCOMPOSITE` is used
4880da935d5SPierre Jolivet 
4890da935d5SPierre Jolivet     Values:
4900da935d5SPierre Jolivet +  `MAT_COMPOSITE_ADDITIVE`       - sum of matrices (default)
4910da935d5SPierre Jolivet -  `MAT_COMPOSITE_MULTIPLICATIVE` - product of matrices
4920da935d5SPierre Jolivet 
4930da935d5SPierre Jolivet     Level: beginner
4940da935d5SPierre Jolivet 
4950da935d5SPierre Jolivet .seealso: [](ch_matrices), `MATCOMPOSITE`, `MatCompositeSetType()`, `MatCompositeGetType()`
4960da935d5SPierre Jolivet E*/
4979371c9d4SSatish Balay typedef enum {
4989371c9d4SSatish Balay   MAT_COMPOSITE_ADDITIVE,
4999371c9d4SSatish Balay   MAT_COMPOSITE_MULTIPLICATIVE
5009371c9d4SSatish Balay } MatCompositeType;
501014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType);
5026dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *);
5033b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure);
5043b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *);
5056d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *);
5068b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *);
50703049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *);
5086d7c1e57SBarry Smith 
50919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *);
510014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *);
511dedccee8SHong Zhang 
512014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *);
5138060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *);
514d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *);
51506511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *);
516fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *);
51765f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *);
51854e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *);
51954e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS);
520014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *);
5213423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *);
522345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatCreateDiagonal(Vec, Mat *);
523345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetDiagonal(Mat, Vec *);
524345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreDiagonal(Mat, Vec *);
525345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetInverseDiagonal(Mat, Vec *);
526345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreInverseDiagonal(Mat, Vec *);
5271472f72bSBarry Smith 
528978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE)
529d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
530978814f1SStefano Zampini #endif
531978814f1SStefano Zampini 
532014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]);
533ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]);
534cc4c1da9SBarry Smith PETSC_EXTERN PetscErrorCode MatPythonCreate(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const char[], Mat *);
5351d6018f0SLisandro Dalcin 
536846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat);
537014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat);
538014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *);
539e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *);
54021c89e3eSBarry Smith 
541014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat);
542014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat);
543014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat);
544014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *);
545014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *);
546713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **);
5470da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *);
548479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat);
5498a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *);
55020c04d79SPierre Jolivet PETSC_EXTERN PetscErrorCode MatComputeVariableBlockEnvelope(Mat);
55199cafbc1SBarry Smith 
552014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
5538a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode);
554014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
555014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]);
556014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]);
557014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]);
55873a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom);
55984cb2905SBarry Smith 
5602ef4de8bSBarry Smith /*S
5612ef1f0ffSBarry Smith    MatStencil - Data structure (C struct) for storing information about rows and
5622ef1f0ffSBarry Smith    columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()`
56362ef0227SBarry Smith 
5642ef1f0ffSBarry Smith    Level: beginner
5652ef1f0ffSBarry Smith 
5662ef1f0ffSBarry Smith    Notes:
56762ef0227SBarry Smith    The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored).
56815229ffcSPierre Jolivet    The c represents the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored.
56962ef0227SBarry Smith 
57087497f52SBarry Smith    For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`.
571be479b30SJed Brown 
5722ef1f0ffSBarry Smith    For staggered grids, see `DMStagStencil`
5732ef4de8bSBarry Smith 
5742ef1f0ffSBarry Smith    Fortran Note:
5752ef1f0ffSBarry Smith    See `MatSetValuesStencil()` for details.
5762ef4de8bSBarry Smith 
5771cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`,
5782ef1f0ffSBarry Smith           `DMStagStencil`
5792ef4de8bSBarry Smith S*/
580435da068SBarry Smith typedef struct {
581c1ac3661SBarry Smith   PetscInt k, j, i, c;
582435da068SBarry Smith } MatStencil;
5832ef4de8bSBarry Smith 
584014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
585014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
586014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt);
587435da068SBarry Smith 
588d91e6319SBarry Smith /*E
5892ef1f0ffSBarry Smith     MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use
590d91e6319SBarry Smith 
5912ef1f0ffSBarry Smith     Values:
5922ef1f0ffSBarry Smith +   `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix
5932ef1f0ffSBarry Smith -   `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted
5942ef1f0ffSBarry Smith 
59516a05f60SBarry Smith     Level: beginner
59616a05f60SBarry Smith 
5971cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()`
598d91e6319SBarry Smith E*/
5999371c9d4SSatish Balay typedef enum {
6009371c9d4SSatish Balay   MAT_FLUSH_ASSEMBLY = 1,
6019371c9d4SSatish Balay   MAT_FINAL_ASSEMBLY = 0
6029371c9d4SSatish Balay } MatAssemblyType;
6034f58015eSStefano Zampini 
604014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType);
605014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType);
606014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *);
6074f9c727eSBarry Smith 
608d91e6319SBarry Smith /*E
6092ef1f0ffSBarry Smith    MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage
610d91e6319SBarry Smith 
611d91e6319SBarry Smith    Level: beginner
612d91e6319SBarry Smith 
6132ef1f0ffSBarry Smith    Note:
6142ef1f0ffSBarry Smith    See `MatSetOption()` for the use of the options
6152ef1f0ffSBarry Smith 
6162ef1f0ffSBarry Smith    Developer Note:
61795452b02SPatrick Sanan    Entries that are negative need not be called collectively by all processes.
618382164b0SBarry Smith 
6191cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetOption()`
620d91e6319SBarry Smith E*/
6219371c9d4SSatish Balay typedef enum {
6229371c9d4SSatish Balay   MAT_OPTION_MIN                  = -3,
623c5e4d11fSDmitry Karpeev   MAT_UNUSED_NONZERO_LOCATION_ERR = -2,
62492d4d306SBarry Smith   MAT_ROW_ORIENTED                = -1,
625382164b0SBarry Smith   MAT_SYMMETRIC                   = 1,
626382164b0SBarry Smith   MAT_STRUCTURALLY_SYMMETRIC      = 2,
6278c78258cSHong Zhang   MAT_FORCE_DIAGONAL_ENTRIES      = 3,
628382164b0SBarry Smith   MAT_IGNORE_OFF_PROC_ENTRIES     = 4,
629382164b0SBarry Smith   MAT_USE_HASH_TABLE              = 5,
630382164b0SBarry Smith   MAT_KEEP_NONZERO_PATTERN        = 6,
631382164b0SBarry Smith   MAT_IGNORE_ZERO_ENTRIES         = 7,
632382164b0SBarry Smith   MAT_USE_INODES                  = 8,
633382164b0SBarry Smith   MAT_HERMITIAN                   = 9,
634382164b0SBarry Smith   MAT_SYMMETRY_ETERNAL            = 10,
635c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_LOCATION_ERR    = 11,
636382164b0SBarry Smith   MAT_IGNORE_LOWER_TRIANGULAR     = 12,
637382164b0SBarry Smith   MAT_ERROR_LOWER_TRIANGULAR      = 13,
638382164b0SBarry Smith   MAT_GETROW_UPPERTRIANGULAR      = 14,
639382164b0SBarry Smith   MAT_SPD                         = 15,
64092d4d306SBarry Smith   MAT_NO_OFF_PROC_ZERO_ROWS       = 16,
64192d4d306SBarry Smith   MAT_NO_OFF_PROC_ENTRIES         = 17,
64292d4d306SBarry Smith   MAT_NEW_NONZERO_LOCATIONS       = 18,
643c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_ALLOCATION_ERR  = 19,
644c5e4d11fSDmitry Karpeev   MAT_SUBSET_OFF_PROC_ENTRIES     = 20,
645c10200c1SHong Zhang   MAT_SUBMAT_SINGLEIS             = 21,
646957cac9fSHong Zhang   MAT_STRUCTURE_ONLY              = 22,
647071fcb05SBarry Smith   MAT_SORTED_FULL                 = 23,
6481a2c6b5cSJunchao Zhang   MAT_FORM_EXPLICIT_TRANSPOSE     = 24,
649b94d7dedSBarry Smith   MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25,
650b94d7dedSBarry Smith   MAT_SPD_ETERNAL                 = 26,
6519371c9d4SSatish Balay   MAT_OPTION_MAX                  = 27
6529371c9d4SSatish Balay } MatOption;
653e057df02SPaul Mullowney 
6540f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions;
655014dd563SJed Brown PETSC_EXTERN PetscErrorCode     MatSetOption(Mat, MatOption, PetscBool);
6567d68702bSBarry Smith PETSC_EXTERN PetscErrorCode     MatGetOption(Mat, MatOption, PetscBool *);
657856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode     MatPropagateSymmetryOptions(Mat, Mat);
65819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode     MatGetType(Mat, MatType *);
65984cb2905SBarry Smith 
660014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
661014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
662014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
663014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRowUpperTriangular(Mat);
664014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRowUpperTriangular(Mat);
665014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetColumnVector(Mat, Vec, PetscInt);
6668c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArray(Mat, PetscScalar *[]);
6678f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]);
668d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]);
6698c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArray(Mat, PetscScalar *[]);
6708f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]);
671d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]);
67221e72a00SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *);
673bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
6744099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetType(Mat, MatType);
675ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode    MatSeqAIJKron(Mat, Mat, MatReuse, Mat *);
676388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode    MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *));
6774099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList;
678cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJGetArray(Mat, PetscScalar *[]);
679cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJRestoreArray(Mat, PetscScalar *[]);
6808397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJGetArray(Mat, PetscScalar *[]);
6818397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]);
6828c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArray(Mat, PetscScalar *[]);
6838c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArray(Mat, PetscScalar *[]);
684d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDensePlaceArray(Mat, const PetscScalar[]);
685d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseReplaceArray(Mat, const PetscScalar[]);
686d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseResetArray(Mat);
6878572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArrayRead(Mat, const PetscScalar *[]);
6888572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayRead(Mat, const PetscScalar *[]);
6896947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWrite(Mat, PetscScalar *[]);
6906947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWrite(Mat, PetscScalar *[]);
691cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *);
692cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]);
693cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *);
694cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]);
695cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *);
696cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]);
697014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSize(Mat, PetscInt *);
698014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSize(Mat, PetscInt);
699014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSizes(Mat, PetscInt *, PetscInt *);
700014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizes(Mat, PetscInt, PetscInt);
70133d57670SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizesFromMats(Mat, Mat, Mat);
7026e25ca73SStefano Zampini PETSC_EXTERN PetscErrorCode    MatSetVariableBlockSizes(Mat, PetscInt, const PetscInt[]);
7036e25ca73SStefano Zampini PETSC_EXTERN PetscErrorCode    MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt *[]);
7040da83c2eSBarry Smith 
70586aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]);
70686aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]);
7076947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *);
7086947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *);
7096947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *);
7106947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *);
7116947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *);
7126947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *);
713a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
7145ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *);
7151620fd73SBarry Smith 
716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec);
717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec);
718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec);
719014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec);
720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec);
721014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *);
722014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *);
723014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec);
724014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec);
725014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat);
726bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat);
727eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat);
728f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec);
729f5edf698SHong Zhang 
730d91e6319SBarry Smith /*E
731d91e6319SBarry Smith   MatDuplicateOption - Indicates if a duplicated sparse matrix should have
732d91e6319SBarry Smith   its numerical values copied over or just its nonzero structure.
733d91e6319SBarry Smith 
7342ef1f0ffSBarry Smith   Values:
7352ef1f0ffSBarry Smith + `MAT_DO_NOT_COPY_VALUES`    - Create a matrix using the same nonzero pattern as the original matrix,
7362ef1f0ffSBarry Smith                                 with zeros for the numerical values
7372ef1f0ffSBarry Smith . `MAT_COPY_VALUES`           - Create a matrix with the same nonzero pattern as the original matrix
7382ef1f0ffSBarry Smith                                 and with the same numerical values.
7392ef1f0ffSBarry Smith - `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix
7402ef1f0ffSBarry Smith                                 and does not copy it, using zeros for the numerical values. The parent and
7412ef1f0ffSBarry Smith                                 child matrices will share their index (i and j) arrays, and you cannot
7422ef1f0ffSBarry Smith                                 insert new nonzero entries into either matrix
7430018da39SRichard Tran Mills 
74416a05f60SBarry Smith   Level: beginner
74516a05f60SBarry Smith 
74687497f52SBarry Smith   Note:
74787497f52SBarry Smith   Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in
74887497f52SBarry Smith   this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified.
74970dcbbb9SBarry Smith 
7501cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicate()`
751d91e6319SBarry Smith E*/
7529371c9d4SSatish Balay typedef enum {
7539371c9d4SSatish Balay   MAT_DO_NOT_COPY_VALUES,
7549371c9d4SSatish Balay   MAT_COPY_VALUES,
7559371c9d4SSatish Balay   MAT_SHARE_NONZERO_PATTERN
7569371c9d4SSatish Balay } MatDuplicateOption;
7572e8a6d31SBarry Smith 
75819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *);
759014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *);
76094a9d846SBarry Smith 
761014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure);
762014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer);
763014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *);
764014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *);
765014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *);
766014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *);
767014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *);
768b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *);
769b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *);
770014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *);
771014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer);
7727b80b807SBarry Smith 
7731a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7741a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7751a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7761a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
777d4fbbf0eSBarry Smith 
778d91e6319SBarry Smith /*S
77987497f52SBarry Smith    MatInfo - Context of matrix information, used with `MatGetInfo()`
780d91e6319SBarry Smith 
781d91e6319SBarry Smith    Level: intermediate
782d91e6319SBarry Smith 
7832ef1f0ffSBarry Smith    Fortran Note:
7842ef1f0ffSBarry Smith    Information is stored as a double-precision array of dimension `MAT_INFO_SIZE`
7852ef1f0ffSBarry Smith 
7861cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetInfo()`, `MatInfoType`
787d91e6319SBarry Smith S*/
7884e220ebcSLois Curfman McInnes typedef struct {
789b0a32e0cSBarry Smith   PetscLogDouble block_size;                          /* block size */
790b0a32e0cSBarry Smith   PetscLogDouble nz_allocated, nz_used, nz_unneeded;  /* number of nonzeros */
791b0a32e0cSBarry Smith   PetscLogDouble memory;                              /* memory allocated */
792b0a32e0cSBarry Smith   PetscLogDouble assemblies;                          /* number of matrix assemblies called */
793b0a32e0cSBarry Smith   PetscLogDouble mallocs;                             /* number of mallocs during MatSetValues() */
794b0a32e0cSBarry Smith   PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */
795b0a32e0cSBarry Smith   PetscLogDouble factor_mallocs;                      /* number of mallocs during factorization */
7964e220ebcSLois Curfman McInnes } MatInfo;
7974e220ebcSLois Curfman McInnes 
798d9274352SBarry Smith /*E
799d9274352SBarry Smith     MatInfoType - Indicates if you want information about the local part of the matrix,
800d9274352SBarry Smith     the entire parallel matrix or the maximum over all the local parts.
801d9274352SBarry Smith 
8022ef1f0ffSBarry Smith     Values:
8032ef1f0ffSBarry Smith +   `MAT_LOCAL`      - values for each MPI process part of the matrix
8042ef1f0ffSBarry Smith .   `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes
8052ef1f0ffSBarry Smith -   `MAT_GLOBAL_SUM` - sum of each value over all MPI processes
806d9274352SBarry Smith 
80716a05f60SBarry Smith     Level: beginner
80816a05f60SBarry Smith 
8091cc06b55SBarry Smith .seealso: [](ch_matrices), `MatGetInfo()`, `MatInfo`
810d9274352SBarry Smith E*/
8119371c9d4SSatish Balay typedef enum {
8129371c9d4SSatish Balay   MAT_LOCAL      = 1,
8139371c9d4SSatish Balay   MAT_GLOBAL_MAX = 2,
8149371c9d4SSatish Balay   MAT_GLOBAL_SUM = 3
8159371c9d4SSatish Balay } MatInfoType;
816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *);
817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec);
818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]);
819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]);
820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]);
821eede4a3fSMark Adams PETSC_EXTERN PetscErrorCode MatGetRowSumAbs(Mat, Vec);
822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]);
823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec);
824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *);
8257fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *);
8267fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat);
827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *);
828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *);
829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec);
830014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode);
831a52676ecSHong Zhang 
832014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *);
833014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *);
834014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *);
835014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
836014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
837e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
838e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
839a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
840a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
841cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
8424222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
843447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
84486919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *);
8457b80b807SBarry Smith 
846014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *);
847014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *);
848857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *);
849857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *);
850857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *);
851857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *);
852857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *);
853857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *);
854857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *);
855014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat);
8561b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat);
857014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
858014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec);
859014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
860014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
861014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
862014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec);
8637b80b807SBarry Smith 
864014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *);
865014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *);
866014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *);
867014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **);
868014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *);
869014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **);
870566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *);
8715ef9f2a5SBarry Smith 
8727dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
873edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrices()", ) static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
874d71ae5a4SJacob Faibussowitsch {
8759371c9d4SSatish Balay   return MatCreateSubMatrices(mat, n, irow, icol, scall, submat);
8769371c9d4SSatish Balay }
8777dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
878edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatricesMPI()", ) static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
879d71ae5a4SJacob Faibussowitsch {
8809371c9d4SSatish Balay   return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat);
8819371c9d4SSatish Balay }
882014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]);
883df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]);
8847dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *);
885edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrix()", ) static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat)
886d71ae5a4SJacob Faibussowitsch {
8879371c9d4SSatish Balay   return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat);
8889371c9d4SSatish Balay }
889014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *);
890014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *);
891014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *);
892014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *);
8937b80b807SBarry Smith 
894014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *);
895014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *);
896014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat);
897014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *);
8988a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *);
899014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
900ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *);
901f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *);
902014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *);
903014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]);
9048efafbd8SBarry Smith 
905014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt);
906aa1e27eaSFande Kong PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov);
907d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool);
9087b80b807SBarry Smith 
909014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
91022440eb1SKris Buschelman 
9117bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
9122df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
9137bab7c10SHong Zhang 
914014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *);
915014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *);
91622440eb1SKris Buschelman 
917014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
918014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *);
919bc011b1eSHong Zhang 
920014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure);
921014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure);
9221c741599SHong Zhang 
923014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar);
924014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar);
9257b80b807SBarry Smith 
926014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping);
927014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
928a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *);
92981fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout);
930014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
931014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
932014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
933014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
934e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
935014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
936014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
937052efed2SBarry Smith 
938014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt);
939014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *);
94090f02eecSBarry Smith 
941014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec);
942014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec);
943014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec);
94430b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *);
94530b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *);
94630b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *);
9472a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *);
948edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 6, 0, "MatCreateVecs()", ) static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y)
949d71ae5a4SJacob Faibussowitsch {
9509371c9d4SSatish Balay   return MatCreateVecs(mat, x, y);
9519371c9d4SSatish Balay }
95253cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *);
953014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *);
954014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *);
9553a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *);
9569c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *);
957bd481603SBarry Smith 
958c8d6c325SJunchao Zhang /*@C
9591620fd73SBarry Smith    MatSetValue - Set a single entry into a matrix.
9601620fd73SBarry Smith 
961e1c5b2e2SJose E. Roman    Not Collective
962a9834a7dSSatish Balay 
9631620fd73SBarry Smith    Input Parameters:
964c8d6c325SJunchao Zhang +  mat  - the matrix
96516a05f60SBarry Smith .  i    - the row location of the entry
96616a05f60SBarry Smith .  j    - the column location of the entry
96716a05f60SBarry Smith .  va   - the value to insert
96887497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
9691620fd73SBarry Smith 
9701620fd73SBarry Smith    Level: beginner
9711620fd73SBarry Smith 
97295bd0b28SBarry Smith    Notes:
97395bd0b28SBarry Smith    This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()`
97495bd0b28SBarry Smith    MUST be called after all calls to `MatSetValue()` have been completed.
97595bd0b28SBarry Smith 
9762ef1f0ffSBarry Smith    For efficiency one should use `MatSetValues()` and set several values simultaneously.
9772ef1f0ffSBarry Smith 
978b43fc34aSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `InsertMode`, `MatGetValue()`, `MatSetValues()`,
9792ef1f0ffSBarry Smith           `MatSetValueLocal()`, `MatSetValuesLocal()`
980c8d6c325SJunchao Zhang @*/
981c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValue(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
982d71ae5a4SJacob Faibussowitsch {
983c8d6c325SJunchao Zhang   return MatSetValues(mat, 1, &i, 1, &j, &va, mode);
9849371c9d4SSatish Balay }
9851620fd73SBarry Smith 
986e5e5a7b5SPatrick Sanan /*@C
987e5e5a7b5SPatrick Sanan    MatGetValue - Gets a single value from a matrix
9881620fd73SBarry Smith 
989e5e5a7b5SPatrick Sanan    Not Collective; can only return a value owned by the given process
990e5e5a7b5SPatrick Sanan 
991e5e5a7b5SPatrick Sanan    Input Parameters:
992e5e5a7b5SPatrick Sanan +  mat - the matrix
993e5e5a7b5SPatrick Sanan .  row - the row location of the entry
994e5e5a7b5SPatrick Sanan -  col - the column location of the entry
995e5e5a7b5SPatrick Sanan 
996e5e5a7b5SPatrick Sanan    Output Parameter:
997e5e5a7b5SPatrick Sanan .  va - the value
998e5e5a7b5SPatrick Sanan 
9992ef1f0ffSBarry Smith    Level: advanced
10002ef1f0ffSBarry Smith 
1001e5e5a7b5SPatrick Sanan    Notes:
1002b43fc34aSPierre Jolivet    The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd()` before this call
10032ef1f0ffSBarry Smith 
100487497f52SBarry Smith    For efficiency one should use `MatGetValues()` and get several values simultaneously.
1005e5e5a7b5SPatrick Sanan 
100687497f52SBarry Smith    See notes for `MatGetValues()`.
1007e5e5a7b5SPatrick Sanan 
1008b43fc34aSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()`
1009e5e5a7b5SPatrick Sanan @*/
1010d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va)
1011d71ae5a4SJacob Faibussowitsch {
10129371c9d4SSatish Balay   return MatGetValues(mat, 1, &row, 1, &col, va);
10139371c9d4SSatish Balay }
1014e5e5a7b5SPatrick Sanan 
1015c8d6c325SJunchao Zhang /*@C
10162ef1f0ffSBarry Smith    MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes.
1017e5e5a7b5SPatrick Sanan 
1018e5e5a7b5SPatrick Sanan    Not Collective
1019e5e5a7b5SPatrick Sanan 
1020e5e5a7b5SPatrick Sanan    Input Parameters:
1021c8d6c325SJunchao Zhang +  mat  - the matrix
102216a05f60SBarry Smith .  i    - the row location of the entry
102316a05f60SBarry Smith .  j    - the column location of the entry
102416a05f60SBarry Smith .  va   - the value to insert
102587497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
1026e5e5a7b5SPatrick Sanan 
10272ef1f0ffSBarry Smith    Level: intermediate
10282ef1f0ffSBarry Smith 
1029e5e5a7b5SPatrick Sanan    Notes:
103087497f52SBarry Smith    For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously.
1031e5e5a7b5SPatrick Sanan 
103287497f52SBarry Smith    See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used.
1033e5e5a7b5SPatrick Sanan 
10341cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSetValue()`, `MatSetValuesLocal()`
1035c8d6c325SJunchao Zhang @*/
1036c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValueLocal(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
1037d71ae5a4SJacob Faibussowitsch {
1038c8d6c325SJunchao Zhang   return MatSetValuesLocal(mat, 1, &i, 1, &j, &va, mode);
10399371c9d4SSatish Balay }
10401620fd73SBarry Smith 
10411620fd73SBarry Smith /*MC
1042d0609cedSBarry Smith    MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per
1043bd481603SBarry Smith    row in a matrix providing the data that one can use to correctly preallocate the matrix.
1044bd481603SBarry Smith 
1045bd481603SBarry Smith    Synopsis:
1046aaa7dc30SBarry Smith    #include <petscmat.h>
1047d0609cedSBarry Smith    PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz)
1048bd481603SBarry Smith 
1049d083f849SBarry Smith    Collective
1050bd481603SBarry Smith 
1051bd481603SBarry Smith    Input Parameters:
1052bd481603SBarry Smith +  comm  - the communicator that will share the eventually allocated matrix
1053859fcb39SBarry Smith .  nrows - the number of LOCAL rows in the matrix
1054859fcb39SBarry Smith -  ncols - the number of LOCAL columns in the matrix
1055bd481603SBarry Smith 
1056bd481603SBarry Smith    Output Parameters:
1057bd481603SBarry Smith +  dnz - the array that will be passed to the matrix preallocation routines
1058a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1059bd481603SBarry Smith 
10602ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1061bd481603SBarry Smith 
1062bd481603SBarry Smith    Notes:
10632ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
10642ef1f0ffSBarry Smith    the use of this routine
10652ef1f0ffSBarry Smith 
1066d0609cedSBarry Smith    This is a macro that handles its own error checking, it does not return an error code.
1067d0609cedSBarry Smith 
10682ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1069bd481603SBarry Smith 
10702ef1f0ffSBarry Smith    Developer Note:
1071af27ebaaSBarry Smith    This is a MACRO, not a function, because it has a leading { that is closed by `PetscPreallocateFinalize()`.
1072bd481603SBarry Smith 
10731cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1074db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1075bd481603SBarry Smith M*/
10769371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \
10779371c9d4SSatish Balay   do { \
10783ba16761SJacob Faibussowitsch     PetscInt              __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \
10793ba16761SJacob Faibussowitsch     PetscInt PETSC_UNUSED __start; \
10809566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \
10819566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \
10829371c9d4SSatish Balay     __start = __end - __ncols; \
10839371c9d4SSatish Balay     (void)__start; \
10849566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \
10855f80ce2aSJacob Faibussowitsch   __rstart -= __nrows
10867c922b88SBarry Smith 
1087edd03b47SJacob Faibussowitsch #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateBegin()", ) MatPreallocateBegin(__VA_ARGS__)
1088d0609cedSBarry Smith 
1089bd481603SBarry Smith /*MC
1090bd481603SBarry Smith    MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1091bd481603SBarry Smith    inserted using a local number of the rows and columns
1092bd481603SBarry Smith 
1093bd481603SBarry Smith    Synopsis:
1094aaa7dc30SBarry Smith    #include <petscmat.h>
1095c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1096bd481603SBarry Smith 
1097bd481603SBarry Smith    Not Collective
1098bd481603SBarry Smith 
1099bd481603SBarry Smith    Input Parameters:
1100784ac674SJed Brown +  map   - the row mapping from local numbering to global numbering
1101bd481603SBarry Smith .  nrows - the number of rows indicated
11021d73ed98SBarry Smith .  rows  - the indices of the rows
1103784ac674SJed Brown .  cmap  - the column mapping from local to global numbering
1104bd481603SBarry Smith .  ncols - the number of columns in the matrix
1105bd481603SBarry Smith .  cols  - the columns indicated
1106bd481603SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1107a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1108bd481603SBarry Smith 
11092ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1110bd481603SBarry Smith 
1111bd481603SBarry Smith    Notes:
11122ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11132ef1f0ffSBarry Smith    the use of this routine
1114bd481603SBarry Smith 
11152ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1116bd481603SBarry Smith 
11171cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1118db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()`
1119bd481603SBarry Smith M*/
112094bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11219371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1122c4f061fbSSatish Balay 
1123bd481603SBarry Smith /*MC
1124c1154cd5SBarry Smith    MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1125c1154cd5SBarry Smith    inserted using a local number of the rows and columns. This version removes any duplicate columns in cols
1126c1154cd5SBarry Smith 
1127c1154cd5SBarry Smith    Synopsis:
1128c1154cd5SBarry Smith    #include <petscmat.h>
1129c1154cd5SBarry Smith    PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1130c1154cd5SBarry Smith 
1131c1154cd5SBarry Smith    Not Collective
1132c1154cd5SBarry Smith 
1133c1154cd5SBarry Smith    Input Parameters:
1134c1154cd5SBarry Smith +  map   - the row mapping from local numbering to global numbering
1135c1154cd5SBarry Smith .  nrows - the number of rows indicated
1136c1154cd5SBarry Smith .  rows  - the indices of the rows (these values are mapped to the global values)
1137c1154cd5SBarry Smith .  cmap  - the column mapping from local to global numbering
1138c1154cd5SBarry Smith .  ncols - the number of columns in the matrix   (this value will be changed if duplicate columns are found)
1139c1154cd5SBarry Smith .  cols  - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed)
1140c1154cd5SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1141a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1142c1154cd5SBarry Smith 
11432ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1144c1154cd5SBarry Smith 
1145c1154cd5SBarry Smith    Notes:
11462ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11472ef1f0ffSBarry Smith    the use of this routine
1148c1154cd5SBarry Smith 
11492ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1150c1154cd5SBarry Smith 
11511cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1152db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1153c1154cd5SBarry Smith M*/
115494bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11559371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1156c1154cd5SBarry Smith 
1157c1154cd5SBarry Smith /*MC
1158d6e23781SBarry Smith    MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1159bd481603SBarry Smith    inserted using a local number of the rows and columns
1160bd481603SBarry Smith 
1161bd481603SBarry Smith    Synopsis:
1162aaa7dc30SBarry Smith    #include <petscmat.h>
1163d6e23781SBarry Smith    PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1164d6e23781SBarry Smith 
1165d6e23781SBarry Smith    Not Collective
1166d6e23781SBarry Smith 
1167d6e23781SBarry Smith    Input Parameters:
1168d6e23781SBarry Smith +  map   - the row mapping from local numbering to global numbering
1169d6e23781SBarry Smith .  nrows - the number of rows indicated
1170d6e23781SBarry Smith .  rows  - the indices of the rows
1171d6e23781SBarry Smith .  cmap  - the column mapping from local to global numbering
1172d6e23781SBarry Smith .  ncols - the number of columns in the matrix
1173d6e23781SBarry Smith .  cols  - the columns indicated
1174d6e23781SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1175a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1176d6e23781SBarry Smith 
11772ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1178d6e23781SBarry Smith 
1179d6e23781SBarry Smith    Notes:
11802ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11812ef1f0ffSBarry Smith    the use of this routine
1182d6e23781SBarry Smith 
11832ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1184d6e23781SBarry Smith 
11851cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1186db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`
1187d6e23781SBarry Smith M*/
118894bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11899371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1190d6e23781SBarry Smith 
1191d6e23781SBarry Smith /*MC
1192d6e23781SBarry Smith    MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1193d6e23781SBarry Smith    inserted using a local number of the rows and columns
1194d6e23781SBarry Smith 
1195d6e23781SBarry Smith    Synopsis:
1196d6e23781SBarry Smith    #include <petscmat.h>
1197d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1198bd481603SBarry Smith 
1199bd481603SBarry Smith    Not Collective
1200bd481603SBarry Smith 
1201bd481603SBarry Smith    Input Parameters:
1202bd481603SBarry Smith +  map   - the mapping between local numbering and global numbering
1203bd481603SBarry Smith .  nrows - the number of rows indicated
12041d73ed98SBarry Smith .  rows  - the indices of the rows
1205bd481603SBarry Smith .  ncols - the number of columns in the matrix
1206bd481603SBarry Smith .  cols  - the columns indicated
1207bd481603SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1208a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1209bd481603SBarry Smith 
12102ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1211bd481603SBarry Smith 
1212bd481603SBarry Smith    Notes:
12132ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12142ef1f0ffSBarry Smith    the use of this routine
1215bd481603SBarry Smith 
12162ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1217bd481603SBarry Smith 
12181cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`
1219db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1220bd481603SBarry Smith M*/
122194bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \
12229371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));)
1223e83a5d19SLisandro Dalcin 
1224bd481603SBarry Smith /*MC
1225bd481603SBarry Smith    MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1226bd481603SBarry Smith    inserted using a local number of the rows and columns
1227bd481603SBarry Smith 
1228bd481603SBarry Smith    Synopsis:
1229aaa7dc30SBarry Smith    #include <petscmat.h>
1230c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1231bd481603SBarry Smith 
1232bd481603SBarry Smith    Not Collective
1233bd481603SBarry Smith 
1234bd481603SBarry Smith    Input Parameters:
123564075487SBarry Smith +  row   - the row
1236bd481603SBarry Smith .  ncols - the number of columns in the matrix
1237a50f8bf6SHong Zhang -  cols  - the columns indicated
1238a50f8bf6SHong Zhang 
1239a50f8bf6SHong Zhang    Output Parameters:
1240a50f8bf6SHong Zhang +  dnz - the array that will be passed to the matrix preallocation routines
1241a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1242bd481603SBarry Smith 
12432ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1244bd481603SBarry Smith 
1245bd481603SBarry Smith    Notes:
12462ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12472ef1f0ffSBarry Smith    the use of this routine
1248bd481603SBarry Smith 
12492ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1250bd481603SBarry Smith 
1251af27ebaaSBarry Smith    This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin().
12521620fd73SBarry Smith 
12531cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1254db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1255bd481603SBarry Smith M*/
12569371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \
12579371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \
125864075487SBarry Smith     if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \
1259a6042fd4SStefano Zampini     else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12609371c9d4SSatish Balay   })
12617c922b88SBarry Smith 
1262bd481603SBarry Smith /*MC
1263d6e23781SBarry Smith    MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1264bd481603SBarry Smith    inserted using a local number of the rows and columns
1265bd481603SBarry Smith 
1266bd481603SBarry Smith    Synopsis:
1267aaa7dc30SBarry Smith    #include <petscmat.h>
1268d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1269bd481603SBarry Smith 
1270bd481603SBarry Smith    Not Collective
1271bd481603SBarry Smith 
1272bd481603SBarry Smith    Input Parameters:
1273bd481603SBarry Smith +  nrows - the number of rows indicated
12741d73ed98SBarry Smith .  rows  - the indices of the rows
1275bd481603SBarry Smith .  ncols - the number of columns in the matrix
1276bd481603SBarry Smith .  cols  - the columns indicated
1277bd481603SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1278a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1279bd481603SBarry Smith 
12802ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1281bd481603SBarry Smith 
1282bd481603SBarry Smith    Notes:
12832ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12842ef1f0ffSBarry Smith    the use of this routine
1285bd481603SBarry Smith 
12862ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1287bd481603SBarry Smith 
1288af27ebaaSBarry Smith    This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin().
12891620fd73SBarry Smith 
12901cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`,
1291db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1292bd481603SBarry Smith M*/
129394bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \
12949371c9d4SSatish Balay   PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \
1295d3d32019SBarry Smith     if (cols[__i] >= __end) onz[row - __rstart]++; \
1296a6042fd4SStefano Zampini     else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12979371c9d4SSatish Balay   })
1298d3d32019SBarry Smith 
1299bd481603SBarry Smith /*MC
1300a6042fd4SStefano Zampini    MatPreallocateLocation -  An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists
130116371a99SBarry Smith 
130216371a99SBarry Smith    Synopsis:
1303aaa7dc30SBarry Smith    #include <petscmat.h>
130416371a99SBarry Smith    PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz)
130516371a99SBarry Smith 
130616371a99SBarry Smith    Not Collective
130716371a99SBarry Smith 
130816371a99SBarry Smith    Input Parameters:
1309a2b725a8SWilliam Gropp +  A     - matrix
131016371a99SBarry Smith .  row   - row where values exist (must be local to this process)
131116371a99SBarry Smith .  ncols - number of columns
131216371a99SBarry Smith .  cols  - columns with nonzeros
131316371a99SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1314a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
131516371a99SBarry Smith 
13162ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
131716371a99SBarry Smith 
131816371a99SBarry Smith    Notes:
13192ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
13202ef1f0ffSBarry Smith    the use of this routine
132116371a99SBarry Smith 
13222ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
132316371a99SBarry Smith 
1324af27ebaaSBarry Smith    Developer Note:
1325af27ebaaSBarry Smith    This is a MACRO, not a function, because it uses a bunch of variables private to the MatPreallocation.... routines.
132616371a99SBarry Smith 
13271cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1328db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
132916371a99SBarry Smith M*/
1330d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz))
133116371a99SBarry Smith 
133216371a99SBarry Smith /*MC
1333d0609cedSBarry Smith    MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per
1334bd481603SBarry Smith    row in a matrix providing the data that one can use to correctly preallocate the matrix.
1335bd481603SBarry Smith 
1336bd481603SBarry Smith    Synopsis:
1337aaa7dc30SBarry Smith    #include <petscmat.h>
1338d0609cedSBarry Smith    PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz)
1339bd481603SBarry Smith 
1340d083f849SBarry Smith    Collective
1341bd481603SBarry Smith 
1342bd481603SBarry Smith    Input Parameters:
134316371a99SBarry Smith +  dnz - the array that was be passed to the matrix preallocation routines
1344a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1345bd481603SBarry Smith 
13462ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1347bd481603SBarry Smith 
1348bd481603SBarry Smith    Notes:
13492ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
13502ef1f0ffSBarry Smith    the use of this routine
1351d0609cedSBarry Smith 
13522ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1353bd481603SBarry Smith 
13542ef1f0ffSBarry Smith    Developer Note:
1355af27ebaaSBarry Smith    This is a MACRO, not a function, because it closes the { started in MatPreallocateBegin().
13561620fd73SBarry Smith 
13571cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1358db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1359bd481603SBarry Smith M*/
13609371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \
13619371c9d4SSatish Balay   PetscCall(PetscFree2(dnz, onz)); \
13629371c9d4SSatish Balay   } \
13639371c9d4SSatish Balay   while (0)
1364d0609cedSBarry Smith 
1365edd03b47SJacob Faibussowitsch #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateEnd()", ) MatPreallocateEnd(__VA_ARGS__)
13667c922b88SBarry Smith 
13677b80b807SBarry Smith /* Routines unique to particular data structures */
1368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *);
1369698d4c6aSKris Buschelman 
1370014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *);
1371014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *);
1372698d4c6aSKris Buschelman 
1373014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]);
1374014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]);
1375014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1376014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1377014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1378014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool);
13797b80b807SBarry Smith 
1380a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4
1381a96a251dSBarry Smith 
1382014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1383014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1384014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]);
138519b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt);
1386273d9f13SBarry Smith 
1387014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1388014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1389014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1390014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1391014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1392014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1393014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1394014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]);
1395b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *);
1396252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *);
1397014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]);
1398014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]);
13999230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
14009230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
1401014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *);
1402273d9f13SBarry Smith 
140349a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *);
1404ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt);
1405edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatDenseSetLDA()", ) static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda)
1406d71ae5a4SJacob Faibussowitsch {
14079371c9d4SSatish Balay   return MatDenseSetLDA(A, lda);
14089371c9d4SSatish Balay }
1409014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *);
14101b807ce4Svictorle 
1411621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1412621e819fSSatish Balay 
1413014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat);
1414014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat);
14152e8a6d31SBarry Smith 
1416014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *);
14177cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *);
14187b80b807SBarry Smith /*
14197b80b807SBarry Smith   These routines are not usually accessed directly, rather solving is
142094b7f48cSBarry Smith   done through the KSP and PC interfaces.
14217b80b807SBarry Smith */
14227b80b807SBarry Smith 
142376bdecfbSBarry Smith /*J
14242ef1f0ffSBarry Smith    MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used
14252ef1f0ffSBarry Smith    to reduce fill in sparse factorizations.
1426d9274352SBarry Smith 
1427d9274352SBarry Smith    Level: beginner
1428d9274352SBarry Smith 
14292c7c0729SBarry Smith    Notes:
143016a05f60SBarry Smith    If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one
143116a05f60SBarry Smith    of its own.
14322c7c0729SBarry Smith 
14332ef1f0ffSBarry Smith    There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()`
14342ef1f0ffSBarry Smith 
14352ef1f0ffSBarry Smith    Developer Note:
14362ef1f0ffSBarry Smith    This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning`
14372ef1f0ffSBarry Smith 
14381cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`,
14392ef1f0ffSBarry Smith           `PCFactorSetOrderingType()`
144076bdecfbSBarry Smith J*/
144119fd82e9SBarry Smith typedef const char *MatOrderingType;
14422692d6eeSBarry Smith #define MATORDERINGNATURAL       "natural"
14432692d6eeSBarry Smith #define MATORDERINGND            "nd"
14442692d6eeSBarry Smith #define MATORDERING1WD           "1wd"
14452692d6eeSBarry Smith #define MATORDERINGRCM           "rcm"
14462692d6eeSBarry Smith #define MATORDERINGQMD           "qmd"
14472692d6eeSBarry Smith #define MATORDERINGROWLENGTH     "rowlength"
1448510184a7SJed Brown #define MATORDERINGWBM           "wbm"
1449fc1bef75SJed Brown #define MATORDERINGSPECTRAL      "spectral"
1450312e372aSBarry Smith #define MATORDERINGAMD           "amd"           /* only works if UMFPACK is installed with PETSc */
1451048412efSPablo Brubeck #define MATORDERINGMETISND       "metisnd"       /* only works if METIS is installed with PETSc */
14529bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */
14532c7c0729SBarry Smith #define MATORDERINGEXTERNAL      "external"      /* uses an ordering type internal to the factorization package */
1454b12f92e5SBarry Smith 
145519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrdering(Mat, MatOrderingType, IS *, IS *);
1456140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrderingList(PetscFunctionList *);
1457bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode    MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *));
1458140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList;
1459d4fbbf0eSBarry Smith 
1460013e2dc7SBarry Smith #include "petscmatcoarsen.h"
1461013e2dc7SBarry Smith 
1462014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS);
1463fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *);
1464a2ce50c7SBarry Smith 
14654ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *);
14664ac6704cSBarry Smith 
1467d91e6319SBarry Smith /*S
14682ef1f0ffSBarry Smith    MatFactorShiftType - Type of numeric shift used for factorizations
1469d90ac83dSHong Zhang 
14702ef1f0ffSBarry Smith    Values:
14712ef1f0ffSBarry Smith +  `MAT_SHIFT_NONE`              - do not shift the matrix diagonal entries
14722ef1f0ffSBarry Smith .  `MAT_SHIFT_NONZERO`           - shift the entries to be non-zero
14732ef1f0ffSBarry Smith .  `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite
14742ef1f0ffSBarry Smith -  `MAT_SHIFT_INBLOCKS`          - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ`
1475d90ac83dSHong Zhang 
14762ef1f0ffSBarry Smith    Level: intermediate
14772ef1f0ffSBarry Smith 
14781cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()`
1479d90ac83dSHong Zhang S*/
14809371c9d4SSatish Balay typedef enum {
14819371c9d4SSatish Balay   MAT_SHIFT_NONE,
14829371c9d4SSatish Balay   MAT_SHIFT_NONZERO,
14839371c9d4SSatish Balay   MAT_SHIFT_POSITIVE_DEFINITE,
14849371c9d4SSatish Balay   MAT_SHIFT_INBLOCKS
14859371c9d4SSatish Balay } MatFactorShiftType;
14866a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[];
14875e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[];
1488d90ac83dSHong Zhang 
1489d90ac83dSHong Zhang /*S
1490ec5066bdSBarry Smith     MatFactorError - indicates what type of error was generated in a matrix factorization
14919aa7eafdSHong Zhang 
14922ef1f0ffSBarry Smith     Values:
14932ef1f0ffSBarry Smith +   `MAT_FACTOR_NOERROR`           - there was no error during the factorization
14942ef1f0ffSBarry Smith .   `MAT_FACTOR_STRUCT_ZEROPIVOT`  - there was a missing entry in a diagonal location of the matrix
14952ef1f0ffSBarry Smith .   `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization
14962ef1f0ffSBarry Smith .   `MAT_FACTOR_OUTMEMORY`         - the factorization has run out of memory
14972ef1f0ffSBarry Smith -   `MAT_FACTOR_OTHER`             - some other error has occurred.
14989aa7eafdSHong Zhang 
14992ef1f0ffSBarry Smith     Level: intermediate
150000e125f8SBarry Smith 
15012ef1f0ffSBarry Smith     Note:
15022ef1f0ffSBarry Smith     When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason`
15032ef1f0ffSBarry Smith 
15041cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`,
15052ef1f0ffSBarry Smith           `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason`
15069aa7eafdSHong Zhang S*/
15079371c9d4SSatish Balay typedef enum {
15089371c9d4SSatish Balay   MAT_FACTOR_NOERROR,
15099371c9d4SSatish Balay   MAT_FACTOR_STRUCT_ZEROPIVOT,
15109371c9d4SSatish Balay   MAT_FACTOR_NUMERIC_ZEROPIVOT,
15119371c9d4SSatish Balay   MAT_FACTOR_OUTMEMORY,
15129371c9d4SSatish Balay   MAT_FACTOR_OTHER
15139371c9d4SSatish Balay } MatFactorError;
15149aa7eafdSHong Zhang 
151500e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *);
1516b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat);
15177b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *);
151800e125f8SBarry Smith 
15199aa7eafdSHong Zhang /*S
1520422a814eSBarry Smith    MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization
1521b00f7748SHong Zhang 
1522b00f7748SHong Zhang    Level: developer
1523b00f7748SHong Zhang 
15242ef1f0ffSBarry Smith    Note:
15252ef1f0ffSBarry Smith    You can use `MatFactorInfoInitialize()` to set default values.
1526b00f7748SHong Zhang 
15272ef1f0ffSBarry Smith    Fortran Note:
15282ef1f0ffSBarry Smith    The data is available in a double precision arrays of size `MAT_FACTORINFO_SIZE`
15292ef1f0ffSBarry Smith 
15301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`,
15312ef1f0ffSBarry Smith           `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()`
1532b00f7748SHong Zhang S*/
1533b00f7748SHong Zhang typedef struct {
153415e8a5b3SHong Zhang   PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */
153585317021SBarry Smith   PetscReal usedt;
153615e8a5b3SHong Zhang   PetscReal dt;            /* drop tolerance */
1537b00f7748SHong Zhang   PetscReal dtcol;         /* tolerance for pivoting */
153815e8a5b3SHong Zhang   PetscReal dtcount;       /* maximum nonzeros to be allowed per row */
153967e28bfeSBarry Smith   PetscReal fill;          /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */
1540348344bbSBarry Smith   PetscReal levels;        /* ICC/ILU(levels) */
1541bcd9e38bSBarry Smith   PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0
1542bcd9e38bSBarry Smith                                    factorization may be faster if do not pivot */
154315e8a5b3SHong Zhang   PetscReal zeropivot;     /* pivot is called zero if less than this */
1544f4db908eSBarry Smith   PetscReal shifttype;     /* type of shift added to matrix factor to prevent zero pivots */
1545f4db908eSBarry Smith   PetscReal shiftamount;   /* how large the shift is */
154615e8a5b3SHong Zhang } MatFactorInfo;
1547ffa6d0a5SLois Curfman McInnes 
1548014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *);
15499a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *);
15509a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15519a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *);
15529a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *);
15539a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *);
15549a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15559a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15569a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15579a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *);
15589a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *);
15593f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *);
15603f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15613f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *);
1562014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *);
1563014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec);
1564014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec);
1565014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec);
1566014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec);
1567014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec);
1568014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec);
1569014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs);
15707c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat);
15717c2f51b8SStefano Zampini 
15729371c9d4SSatish Balay typedef enum {
15739371c9d4SSatish Balay   MAT_FACTOR_SCHUR_UNFACTORED,
15749371c9d4SSatish Balay   MAT_FACTOR_SCHUR_FACTORED,
15759371c9d4SSatish Balay   MAT_FACTOR_SCHUR_INVERTED
15769371c9d4SSatish Balay } MatFactorSchurStatus;
15778e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS);
15787c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15797c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus);
15805a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat);
15817c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15825a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec);
15835a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec);
15846dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat);
1585bb5a7306SBarry Smith 
15868a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat);
1587d91e6319SBarry Smith /*E
1588d91e6319SBarry Smith    MatSORType - What type of (S)SOR to perform
1589bb1eb677SSatish Balay 
15902ef1f0ffSBarry Smith    Values:
15912ef1f0ffSBarry Smith +  `SOR_FORWARD_SWEEP`         - do a sweep from the first row of the matrix to the last
15922ef1f0ffSBarry Smith .  `SOR_BACKWARD_SWEEP`        - do a sweep from the last row to the first
15932ef1f0ffSBarry Smith .  `SOR_SYMMETRIC_SWEEP`       - do a sweep from the first row to the last and then back to the first
1594af27ebaaSBarry Smith .  `SOR_LOCAL_FORWARD_SWEEP`   - each MPI process does its own forward sweep with no communication
1595af27ebaaSBarry Smith .  `SOR_LOCAL_BACKWARD_SWEEP`  - each MPI process does its own backward sweep with no communication
1596af27ebaaSBarry Smith .  `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI process does its own symmetric sweep with no communication
15972ef1f0ffSBarry Smith .  `SOR_ZERO_INITIAL_GUESS`    - indicates the initial solution is zero so the sweep can avoid unneeded computation
15982ef1f0ffSBarry Smith .  `SOR_EISENSTAT`             - apply the Eisentat application of SOR, see `PCEISENSTAT`
15992ef1f0ffSBarry Smith .  `SOR_APPLY_UPPER`           - multiply by the upper triangular portion of the matrix
16002ef1f0ffSBarry Smith -  `SOR_APPLY_LOWER`           - multiply by the lower triangular portion of the matrix
16012ef1f0ffSBarry Smith 
1602d91e6319SBarry Smith    Level: beginner
1603d91e6319SBarry Smith 
16042ef1f0ffSBarry Smith    Note:
16052ef1f0ffSBarry Smith    These may be bitwise ORd together
1606d9274352SBarry Smith 
16072ef1f0ffSBarry Smith    Developer Note:
16082ef1f0ffSBarry Smith    Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below
1609d91e6319SBarry Smith 
16101cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSOR()`
1611d91e6319SBarry Smith E*/
16129371c9d4SSatish Balay typedef enum {
16139371c9d4SSatish Balay   SOR_FORWARD_SWEEP         = 1,
16149371c9d4SSatish Balay   SOR_BACKWARD_SWEEP        = 2,
16159371c9d4SSatish Balay   SOR_SYMMETRIC_SWEEP       = 3,
16169371c9d4SSatish Balay   SOR_LOCAL_FORWARD_SWEEP   = 4,
16179371c9d4SSatish Balay   SOR_LOCAL_BACKWARD_SWEEP  = 8,
16189371c9d4SSatish Balay   SOR_LOCAL_SYMMETRIC_SWEEP = 12,
16199371c9d4SSatish Balay   SOR_ZERO_INITIAL_GUESS    = 16,
16209371c9d4SSatish Balay   SOR_EISENSTAT             = 32,
16219371c9d4SSatish Balay   SOR_APPLY_UPPER           = 64,
16229371c9d4SSatish Balay   SOR_APPLY_LOWER           = 128
16239371c9d4SSatish Balay } MatSORType;
1624014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
16258ed539a5SBarry Smith 
16267086a01eSPeter Brune /*S
16277086a01eSPeter Brune    MatColoring - Object for managing the coloring of matrices.
16287086a01eSPeter Brune 
16297086a01eSPeter Brune    Level: beginner
16307086a01eSPeter Brune 
1631ec5066bdSBarry Smith    Notes:
163287497f52SBarry Smith    Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
163387497f52SBarry Smith    matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors).
1634ec5066bdSBarry Smith 
163587497f52SBarry Smith    Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This
16362ef1f0ffSBarry Smith    same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices.
1637ec5066bdSBarry Smith 
16381cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`,
16392ef1f0ffSBarry Smith           `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`,
16402ef1f0ffSBarry Smith           `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen`
16417086a01eSPeter Brune S*/
1642d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring;
1643d4db15c4SBarry Smith 
1644d4db15c4SBarry Smith /*J
1645d4db15c4SBarry Smith    MatColoringType - String with the name of a PETSc matrix coloring
1646d9274352SBarry Smith 
1647d9274352SBarry Smith    Level: beginner
1648d9274352SBarry Smith 
16491cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring`
165076bdecfbSBarry Smith J*/
165119fd82e9SBarry Smith typedef const char *MatColoringType;
16525567d71aSPeter Brune #define MATCOLORINGJP      "jp"
1653b9acb617SPeter Brune #define MATCOLORINGPOWER   "power"
16542692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural"
16552692d6eeSBarry Smith #define MATCOLORINGSL      "sl"
16562692d6eeSBarry Smith #define MATCOLORINGLF      "lf"
16572692d6eeSBarry Smith #define MATCOLORINGID      "id"
16588121bdceSPeter Brune #define MATCOLORINGGREEDY  "greedy"
1659b12f92e5SBarry Smith 
16608ac6da0aSPeter Brune /*E
16612ef1f0ffSBarry Smith    MatColoringWeightType - Type of weight scheme used for the coloring algorithm
16628ac6da0aSPeter Brune 
16632ef1f0ffSBarry Smith    Values:
166487497f52SBarry Smith +  `MAT_COLORING_RANDOM`  - Random weights
166587497f52SBarry Smith .  `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering.
166687497f52SBarry Smith -  `MAT_COLORING_LF`      - Last-first weighting.
16678ac6da0aSPeter Brune 
16688ac6da0aSPeter Brune     Level: intermediate
16698ac6da0aSPeter Brune 
16701cc06b55SBarry Smith .seealso: [](ch_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()`
16718ac6da0aSPeter Brune E*/
16729371c9d4SSatish Balay typedef enum {
16739371c9d4SSatish Balay   MAT_COLORING_WEIGHT_RANDOM,
16749371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LEXICAL,
16759371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LF,
16769371c9d4SSatish Balay   MAT_COLORING_WEIGHT_SL
16779371c9d4SSatish Balay } MatColoringWeightType;
16788ac6da0aSPeter Brune 
1679335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *);
1680d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *);
1681335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *);
1682335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer);
1683335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType);
1684335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring);
1685335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt);
1686335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *);
1687335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt);
1688335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *);
1689335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *);
1690335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring));
1691014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *);
16928ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType);
1693c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *);
16948ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm);
1695bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring);
1696edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatColoringTest()", ) static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring)
1697d71ae5a4SJacob Faibussowitsch {
16989371c9d4SSatish Balay   return MatColoringTest(matcoloring, iscoloring);
16999371c9d4SSatish Balay }
1700bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring);
1701639f9d9dSBarry Smith 
1702d9274352SBarry Smith /*S
170387497f52SBarry Smith    MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring
1704639f9d9dSBarry Smith 
1705d9274352SBarry Smith    Level: beginner
1706d9274352SBarry Smith 
1707ec5066bdSBarry Smith    Notes:
170887497f52SBarry Smith    This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()`
1709ec5066bdSBarry Smith 
17102ef1f0ffSBarry Smith    The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object
17112ef1f0ffSBarry Smith 
17121cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()`
1713d9274352SBarry Smith S*/
1714e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring;
1715639f9d9dSBarry Smith 
1716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *);
1717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *);
1718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer);
1719014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *);
1720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **);
1721014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal);
1722014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring);
1723d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *);
1724014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec);
1725edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]);
1726f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring);
1727f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt);
1728bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *);
1729b1683b59SHong Zhang 
1730b1683b59SHong Zhang /*S
1731af27ebaaSBarry Smith    MatTransposeColoring - Object for computing a sparse matrix product $C = A*B^T$ via coloring
1732b1683b59SHong Zhang 
17332ef1f0ffSBarry Smith    Level: developer
1734b1683b59SHong Zhang 
17351cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()`
1736b1683b59SHong Zhang S*/
1737b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring;
1738b1683b59SHong Zhang 
1739014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *);
1740014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat);
1741014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat);
1742014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *);
1743b1683b59SHong Zhang 
1744d9274352SBarry Smith /*S
1745d9274352SBarry Smith    MatPartitioning - Object for managing the partitioning of a matrix or graph
1746d9274352SBarry Smith 
1747d9274352SBarry Smith    Level: beginner
1748d9274352SBarry Smith 
174987497f52SBarry Smith    Note:
175087497f52SBarry Smith    There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations
175187497f52SBarry Smith    via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`)
1752ec5066bdSBarry Smith 
1753b5e6e808SPierre Jolivet    Developer Note:
17542ef1f0ffSBarry Smith    It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed
1755ec5066bdSBarry Smith 
17561cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`,
17572ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
1758d9274352SBarry Smith S*/
175991e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning;
1760d9274352SBarry Smith 
176176bdecfbSBarry Smith /*J
17628f6c3df8SBarry Smith     MatPartitioningType - String with the name of a PETSc matrix partitioning
1763d9274352SBarry Smith 
1764d9274352SBarry Smith    Level: beginner
17650d04baf8SBarry Smith dm
17661cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`,
17672ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
176876bdecfbSBarry Smith J*/
176919fd82e9SBarry Smith typedef const char *MatPartitioningType;
17702692d6eeSBarry Smith #define MATPARTITIONINGCURRENT  "current"
1771aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE  "average"
17722692d6eeSBarry Smith #define MATPARTITIONINGSQUARE   "square"
17732692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis"
17742692d6eeSBarry Smith #define MATPARTITIONINGCHACO    "chaco"
17752692d6eeSBarry Smith #define MATPARTITIONINGPARTY    "party"
177650d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch"
177788d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch"
177871306c60Sjroman 
1779014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *);
178019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType);
1781014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt);
1782014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat);
1783252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt);
1784014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]);
1785014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]);
1786ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool);
1787ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *);
1788014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *);
1789fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *);
1790668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS);
1791f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *);
1792014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *);
1793bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning));
1794014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer);
1795fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]);
1796014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning);
179719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *);
1798ca161407SBarry Smith 
179927538973SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part);
1800014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning);
1801014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *);
18020752156aSBarry Smith 
18039371c9d4SSatish Balay typedef enum {
18049371c9d4SSatish Balay   MP_CHACO_MULTILEVEL = 1,
18059371c9d4SSatish Balay   MP_CHACO_SPECTRAL   = 2,
18069371c9d4SSatish Balay   MP_CHACO_LINEAR     = 4,
18079371c9d4SSatish Balay   MP_CHACO_RANDOM     = 5,
18089371c9d4SSatish Balay   MP_CHACO_SCATTERED  = 6
18099371c9d4SSatish Balay } MPChacoGlobalType;
18106a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[];
18119371c9d4SSatish Balay typedef enum {
18129371c9d4SSatish Balay   MP_CHACO_KERNIGHAN = 1,
18139371c9d4SSatish Balay   MP_CHACO_NONE      = 2
18149371c9d4SSatish Balay } MPChacoLocalType;
18156a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[];
18169371c9d4SSatish Balay typedef enum {
18179371c9d4SSatish Balay   MP_CHACO_LANCZOS = 0,
18189371c9d4SSatish Balay   MP_CHACO_RQI     = 1
18199371c9d4SSatish Balay } MPChacoEigenType;
18206a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[];
1821b6956c12SJose Roman 
1822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType);
1823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *);
1824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType);
1825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *);
1826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal);
1827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType);
1828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *);
1829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal);
1830014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *);
1831014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt);
1832014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *);
183371306c60Sjroman 
183471306c60Sjroman #define MP_PARTY_OPT "opt"
183571306c60Sjroman #define MP_PARTY_LIN "lin"
183671306c60Sjroman #define MP_PARTY_SCA "sca"
183771306c60Sjroman #define MP_PARTY_RAN "ran"
183871306c60Sjroman #define MP_PARTY_GBF "gbf"
183971306c60Sjroman #define MP_PARTY_GCF "gcf"
184071306c60Sjroman #define MP_PARTY_BUB "bub"
184171306c60Sjroman #define MP_PARTY_DEF "def"
1842014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *);
184371306c60Sjroman #define MP_PARTY_HELPFUL_SETS  "hs"
184471306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl"
184571306c60Sjroman #define MP_PARTY_NONE          "no"
1846014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *);
1847014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal);
1848014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool);
1849014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool);
185071306c60Sjroman 
18519371c9d4SSatish Balay typedef enum {
18529371c9d4SSatish Balay   MP_PTSCOTCH_DEFAULT,
18539371c9d4SSatish Balay   MP_PTSCOTCH_QUALITY,
18549371c9d4SSatish Balay   MP_PTSCOTCH_SPEED,
18559371c9d4SSatish Balay   MP_PTSCOTCH_BALANCE,
18569371c9d4SSatish Balay   MP_PTSCOTCH_SAFETY,
18579371c9d4SSatish Balay   MP_PTSCOTCH_SCALABILITY
18589371c9d4SSatish Balay } MPPTScotchStrategyType;
18596a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[];
1860e0f1cffaSJose Roman 
1861014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal);
1862014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *);
1863014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType);
1864014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *);
186571306c60Sjroman 
1866b43b03e9SMark F. Adams /*
18676294fa2bSFande Kong  * hierarchical partitioning
18686294fa2bSFande Kong  */
18694e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *);
18704e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *);
18714e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt);
18724e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt);
18736294fa2bSFande Kong 
1874014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *);
1875591294e4SBarry Smith 
18760752156aSBarry Smith /*
1877c786d857SStefano Zampini     If you add entries here you must also add them to src/mat/f90-mod/petscmat.h
1878c786d857SStefano Zampini     If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx
1879d4fbbf0eSBarry Smith */
18809371c9d4SSatish Balay typedef enum {
18819371c9d4SSatish Balay   MATOP_SET_VALUES               = 0,
18821c1c02c0SLois Curfman McInnes   MATOP_GET_ROW                  = 1,
18831c1c02c0SLois Curfman McInnes   MATOP_RESTORE_ROW              = 2,
18841c1c02c0SLois Curfman McInnes   MATOP_MULT                     = 3,
18851c1c02c0SLois Curfman McInnes   MATOP_MULT_ADD                 = 4,
18867c922b88SBarry Smith   MATOP_MULT_TRANSPOSE           = 5,
18877c922b88SBarry Smith   MATOP_MULT_TRANSPOSE_ADD       = 6,
18881c1c02c0SLois Curfman McInnes   MATOP_SOLVE                    = 7,
18891c1c02c0SLois Curfman McInnes   MATOP_SOLVE_ADD                = 8,
18907c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE          = 9,
18917c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE_ADD      = 10,
18921c1c02c0SLois Curfman McInnes   MATOP_LUFACTOR                 = 11,
18931c1c02c0SLois Curfman McInnes   MATOP_CHOLESKYFACTOR           = 12,
1894a714c06dSBarry Smith   MATOP_SOR                      = 13,
18951c1c02c0SLois Curfman McInnes   MATOP_TRANSPOSE                = 14,
18961c1c02c0SLois Curfman McInnes   MATOP_GETINFO                  = 15,
18971c1c02c0SLois Curfman McInnes   MATOP_EQUAL                    = 16,
18981c1c02c0SLois Curfman McInnes   MATOP_GET_DIAGONAL             = 17,
18991c1c02c0SLois Curfman McInnes   MATOP_DIAGONAL_SCALE           = 18,
19001c1c02c0SLois Curfman McInnes   MATOP_NORM                     = 19,
19011c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_BEGIN           = 20,
19021c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_END             = 21,
1903d519adbfSMatthew Knepley   MATOP_SET_OPTION               = 22,
1904d519adbfSMatthew Knepley   MATOP_ZERO_ENTRIES             = 23,
1905d519adbfSMatthew Knepley   MATOP_ZERO_ROWS                = 24,
1906d519adbfSMatthew Knepley   MATOP_LUFACTOR_SYMBOLIC        = 25,
1907d519adbfSMatthew Knepley   MATOP_LUFACTOR_NUMERIC         = 26,
1908d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27,
1909d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_NUMERIC  = 28,
1910e5f2d425SStefano Zampini   MATOP_SETUP                    = 29,
1911d519adbfSMatthew Knepley   MATOP_ILUFACTOR_SYMBOLIC       = 30,
1912d519adbfSMatthew Knepley   MATOP_ICCFACTOR_SYMBOLIC       = 31,
1913a5b7ff6bSBarry Smith   MATOP_GET_DIAGONAL_BLOCK       = 32,
1914e5f2d425SStefano Zampini   MATOP_SET_INF                  = 33,
1915d519adbfSMatthew Knepley   MATOP_DUPLICATE                = 34,
1916d519adbfSMatthew Knepley   MATOP_FORWARD_SOLVE            = 35,
1917d519adbfSMatthew Knepley   MATOP_BACKWARD_SOLVE           = 36,
1918d519adbfSMatthew Knepley   MATOP_ILUFACTOR                = 37,
1919d519adbfSMatthew Knepley   MATOP_ICCFACTOR                = 38,
1920d519adbfSMatthew Knepley   MATOP_AXPY                     = 39,
19217dae84e0SHong Zhang   MATOP_CREATE_SUBMATRICES       = 40,
1922d519adbfSMatthew Knepley   MATOP_INCREASE_OVERLAP         = 41,
1923d519adbfSMatthew Knepley   MATOP_GET_VALUES               = 42,
1924d519adbfSMatthew Knepley   MATOP_COPY                     = 43,
1925d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX              = 44,
1926d519adbfSMatthew Knepley   MATOP_SCALE                    = 45,
1927d519adbfSMatthew Knepley   MATOP_SHIFT                    = 46,
192835153367SBarry Smith   MATOP_DIAGONAL_SET             = 47,
19299d39f69dSJed Brown   MATOP_ZERO_ROWS_COLUMNS        = 48,
19309d39f69dSJed Brown   MATOP_SET_RANDOM               = 49,
1931d519adbfSMatthew Knepley   MATOP_GET_ROW_IJ               = 50,
1932d519adbfSMatthew Knepley   MATOP_RESTORE_ROW_IJ           = 51,
1933d519adbfSMatthew Knepley   MATOP_GET_COLUMN_IJ            = 52,
1934d519adbfSMatthew Knepley   MATOP_RESTORE_COLUMN_IJ        = 53,
1935d519adbfSMatthew Knepley   MATOP_FDCOLORING_CREATE        = 54,
1936d519adbfSMatthew Knepley   MATOP_COLORING_PATCH           = 55,
1937d519adbfSMatthew Knepley   MATOP_SET_UNFACTORED           = 56,
1938d519adbfSMatthew Knepley   MATOP_PERMUTE                  = 57,
1939d519adbfSMatthew Knepley   MATOP_SET_VALUES_BLOCKED       = 58,
19407dae84e0SHong Zhang   MATOP_CREATE_SUBMATRIX         = 59,
1941d519adbfSMatthew Knepley   MATOP_DESTROY                  = 60,
1942d519adbfSMatthew Knepley   MATOP_VIEW                     = 61,
1943d519adbfSMatthew Knepley   MATOP_CONVERT_FROM             = 62,
1944e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_63=63 */
19457bab7c10SHong Zhang   MATOP_MATMAT_MULT_SYMBOLIC    = 64,
19467bab7c10SHong Zhang   MATOP_MATMAT_MULT_NUMERIC     = 65,
1947d519adbfSMatthew Knepley   MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66,
1948d519adbfSMatthew Knepley   MATOP_SET_VALUES_LOCAL        = 67,
1949d519adbfSMatthew Knepley   MATOP_ZERO_ROWS_LOCAL         = 68,
1950d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX_ABS         = 69,
1951d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN_ABS         = 70,
1952d519adbfSMatthew Knepley   MATOP_CONVERT                 = 71,
1953e5f2d425SStefano Zampini   MATOP_HAS_OPERATION           = 72,
19549d39f69dSJed Brown   /* MATOP_PLACEHOLDER_73=73, */
1955d519adbfSMatthew Knepley   MATOP_SET_VALUES_ADIFOR = 74,
1956d519adbfSMatthew Knepley   MATOP_FD_COLORING_APPLY = 75,
1957d519adbfSMatthew Knepley   MATOP_SET_FROM_OPTIONS  = 76,
1958e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_77=77, */
1959e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_78=78, */
19609d39f69dSJed Brown   MATOP_FIND_ZERO_DIAGONALS       = 79,
1961d519adbfSMatthew Knepley   MATOP_MULT_MULTIPLE             = 80,
1962d519adbfSMatthew Knepley   MATOP_SOLVE_MULTIPLE            = 81,
1963d519adbfSMatthew Knepley   MATOP_GET_INERTIA               = 82,
1964d519adbfSMatthew Knepley   MATOP_LOAD                      = 83,
1965d519adbfSMatthew Knepley   MATOP_IS_SYMMETRIC              = 84,
1966d519adbfSMatthew Knepley   MATOP_IS_HERMITIAN              = 85,
1967d519adbfSMatthew Knepley   MATOP_IS_STRUCTURALLY_SYMMETRIC = 86,
1968820469bcSHong Zhang   MATOP_SET_VALUES_BLOCKEDLOCAL   = 87,
1969b41ce5d5SBarry Smith   MATOP_CREATE_VECS               = 88,
1970e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_89=89, */
1971d519adbfSMatthew Knepley   MATOP_MAT_MULT_SYMBOLIC = 90,
1972d519adbfSMatthew Knepley   MATOP_MAT_MULT_NUMERIC  = 91,
1973e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_92=92, */
1974d519adbfSMatthew Knepley   MATOP_PTAP_SYMBOLIC = 93,
1975d519adbfSMatthew Knepley   MATOP_PTAP_NUMERIC  = 94,
1976e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_95=95, */
1977bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96,
1978bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_NUMER = 97,
1979e5f2d425SStefano Zampini   MATOP_BIND_TO_CPU              = 98,
19807a3c3d58SStefano Zampini   MATOP_PRODUCTSETFROMOPTIONS    = 99,
19817a3c3d58SStefano Zampini   MATOP_PRODUCTSYMBOLIC          = 100,
19827a3c3d58SStefano Zampini   MATOP_PRODUCTNUMERIC           = 101,
1983d519adbfSMatthew Knepley   MATOP_CONJUGATE                = 102,
1984e5f2d425SStefano Zampini   MATOP_VIEW_NATIVE              = 103,
1985d519adbfSMatthew Knepley   MATOP_SET_VALUES_ROW           = 104,
1986d519adbfSMatthew Knepley   MATOP_REAL_PART                = 105,
1987bda6c4cbSBarry Smith   MATOP_IMAGINARY_PART           = 106,
1988bda6c4cbSBarry Smith   MATOP_GET_ROW_UPPER_TRIANGULAR = 107,
1989bda6c4cbSBarry Smith   MATOP_RESTORE_ROW_UPPER_TRIANG = 108,
1990bda6c4cbSBarry Smith   MATOP_MAT_SOLVE                = 109,
199129eadf9eSStefano Zampini   MATOP_MAT_SOLVE_TRANSPOSE      = 110,
1992d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN              = 111,
19930e8d04f7SBarry Smith   MATOP_GET_COLUMN_VECTOR        = 112,
1994d519adbfSMatthew Knepley   MATOP_MISSING_DIAGONAL         = 113,
19950e8d04f7SBarry Smith   MATOP_GET_SEQ_NONZERO_STRUCTUR = 114,
199689c6957cSBarry Smith   MATOP_CREATE                   = 115,
199789c6957cSBarry Smith   MATOP_GET_GHOSTS               = 116,
19980e8d04f7SBarry Smith   MATOP_GET_LOCAL_SUB_MATRIX     = 117,
19990e8d04f7SBarry Smith   MATOP_RESTORE_LOCALSUB_MATRIX  = 118,
2000eeffb40dSHong Zhang   MATOP_MULT_DIAGONAL_BLOCK      = 119,
20010e8d04f7SBarry Smith   MATOP_HERMITIAN_TRANSPOSE      = 120,
20020e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANSPOSE = 121,
20030e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANS_ADD = 122,
20040e8d04f7SBarry Smith   MATOP_GET_MULTI_PROC_BLOCK     = 123,
20059d39f69dSJed Brown   MATOP_FIND_NONZERO_ROWS        = 124,
20060e8d04f7SBarry Smith   MATOP_GET_COLUMN_NORMS         = 125,
20079d39f69dSJed Brown   MATOP_INVERT_BLOCK_DIAGONAL    = 126,
2008e5f2d425SStefano Zampini   MATOP_INVERT_VBLOCK_DIAGONAL   = 127,
2009b41ce5d5SBarry Smith   MATOP_CREATE_SUB_MATRICES_MPI  = 128,
20102b8ad9a3SHong Zhang   MATOP_SET_VALUES_BATCH         = 129,
2011e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_130=130, */
20120e8d04f7SBarry Smith   MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131,
2013e9b602ebSSatish Balay   MATOP_TRANSPOSE_MAT_MULT_NUMER = 132,
20140e8d04f7SBarry Smith   MATOP_TRANSPOSE_COLORING_CREAT = 133,
20150e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_SPT = 134,
20160e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_DEN = 135,
2017e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_136=136, */
20180e8d04f7SBarry Smith   MATOP_RART_SYMBOLIC         = 137,
20190e8d04f7SBarry Smith   MATOP_RART_NUMERIC          = 138,
2020e09a3074SHong Zhang   MATOP_SET_BLOCK_SIZES       = 139,
2021f9426fe0SMark Adams   MATOP_AYPX                  = 140,
20221919a2e2SJed Brown   MATOP_RESIDUAL              = 141,
20239c8f2541SHong Zhang   MATOP_FDCOLORING_SETUP      = 142,
2024e5f2d425SStefano Zampini   MATOP_FIND_OFFBLOCK_ENTRIES = 143,
20252d033e1fSHong Zhang   MATOP_MPICONCATENATESEQ     = 144,
2026bb01b7b0SPatrick Sanan   MATOP_DESTROYSUBMATRICES    = 145,
20274ac41c6fSJose E. Roman   MATOP_MAT_TRANSPOSE_SOLVE   = 146,
20284ac41c6fSJose E. Roman   MATOP_GET_VALUES_LOCAL      = 147,
20294ac41c6fSJose E. Roman   MATOP_CREATE_GRAPH          = 148,
20304ac41c6fSJose E. Roman   /* MATOP_PLACEHOLDER_149=149, */
20314ac41c6fSJose E. Roman   MATOP_TRANSPOSE_SYMBOLIC  = 150,
20324ac41c6fSJose E. Roman   MATOP_ELIMINATE_ZEROS     = 151,
20332b938fe4SJose E. Roman   MATOP_GET_ROW_SUM_ABS     = 152,
203442ce410bSJunchao Zhang   MATOP_GET_FACTOR          = 153,
203542ce410bSJunchao Zhang   MATOP_GET_BLOCK_DIAGONAL  = 154, // NOTE: caller of the two op functions owns the returned matrix
203642ce410bSJunchao Zhang   MATOP_GET_VBLOCK_DIAGONAL = 155  // and need to destroy it after use.
2037fae171e0SBarry Smith } MatOperation;
20380c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void));
2039976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void));
2040976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *);
204194342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *);
2042edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatProductClear()", ) static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A)
2043d71ae5a4SJacob Faibussowitsch {
20449371c9d4SSatish Balay   return MatProductClear(A);
20459371c9d4SSatish Balay }
2046014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void));
2047014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void));
2048014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *);
2049800f99ffSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *));
2050db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType);
2051f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
2052f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
20530c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat);
2054b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType);
2055b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *);
2056112a2221SBarry Smith 
205790ace30eSBarry Smith /*
205890ace30eSBarry Smith    Codes for matrices stored on disk. By default they are
205990ace30eSBarry Smith    stored in a universal format. By changing the format with
20606a9046bcSBarry Smith    PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will
206190ace30eSBarry Smith    be stored in a way natural for the matrix, for example dense matrices
206290ace30eSBarry Smith    would be stored as dense. Matrices stored this way may only be
2063f4403165SShri Abhyankar    read into matrices of the same type.
206490ace30eSBarry Smith */
206590ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1
206690ace30eSBarry Smith 
2067014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal);
206875d48cdbSStefano Zampini 
20698546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType);
207075d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
20714f58015eSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetAllowRepeated(Mat, PetscBool);
20724f58015eSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetAllowRepeated(Mat, PetscBool *);
207375d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool);
2074f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool);
2075014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *);
20763b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *);
2077014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat);
2078e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
20791f4e1ec7SBarry Smith 
2080d9274352SBarry Smith /*S
2081d9274352SBarry Smith    MatNullSpace - Object that removes a null space from a vector, i.e.
2082cb6b9846SMatthew Knepley                   orthogonalizes the vector to a subspace
2083d9274352SBarry Smith 
2084f7a9e4ceSBarry Smith    Level: advanced
2085d9274352SBarry Smith 
20861cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()`
2087d9274352SBarry Smith S*/
208874637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace;
2089d9274352SBarry Smith 
2090014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *);
2091014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *);
2092014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *);
2093d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec);
2094014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *);
20955fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *);
20965fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace);
2097014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace);
2098014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace);
2099014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *);
21004849c82aSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNullSpaces(PetscInt, Mat[], MatNullSpace *[]);
21014849c82aSBarry Smith PETSC_EXTERN PetscErrorCode MatRestoreNullSpaces(PetscInt, Mat[], MatNullSpace *[]);
2102014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *);
2103014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer);
2104014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **);
2105014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *);
210674637425SBarry Smith 
2107014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS);
2108014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal);
2109014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *);
21103f1d51d7SBarry Smith 
2111014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *);
2112014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *);
2113014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *);
2114c4f061fbSSatish Balay 
21150bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *);
21160bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *);
21170bacdadaSStefano Zampini 
2118edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperator()", ) static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B)
2119d71ae5a4SJacob Faibussowitsch {
2120f22e26b7SPierre Jolivet   return MatComputeOperator(A, PETSC_NULLPTR, B);
21219371c9d4SSatish Balay }
2122edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperatorTranspose()", ) static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B)
2123d71ae5a4SJacob Faibussowitsch {
2124f22e26b7SPierre Jolivet   return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B);
21259371c9d4SSatish Balay }
2126b0a32e0cSBarry Smith 
212749bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *);
212849bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *);
2129a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **);
2130a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2131a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **);
2132a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **);
2133a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **);
2134a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2135a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **);
2136a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **);
2137dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat);
2138dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]);
2139dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]);
2140910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *);
214149bd79ccSDebojyoti Ghosh 
2142014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec);
214304f1ad80SBarry Smith 
21444bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDInitializePackage(void);
21454bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDFinalizePackage(void);
21464bf303faSJacob Faibussowitsch 
2147014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2148014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec);
2149014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *);
2150014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *));
2151014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec));
2152014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt);
2153014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat);
2154014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal);
2155014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt);
2156014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *);
2157014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]);
2158014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *);
2159014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *);
2160e884886fSBarry Smith 
21616370053bSBarry Smith /*S
21626370053bSBarry Smith     MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free
21636370053bSBarry Smith               Jacobian vector products
2164e884886fSBarry Smith 
21652ef1f0ffSBarry Smith     Level: developer
21662ef1f0ffSBarry Smith 
216795452b02SPatrick Sanan     Notes:
216887497f52SBarry Smith     `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure
21696370053bSBarry Smith 
21702ef1f0ffSBarry Smith      MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure
21716370053bSBarry Smith 
21722ef1f0ffSBarry Smith     This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator`
21736370053bSBarry Smith 
21741cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`,
21752ef1f0ffSBarry Smith           `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator`
21766370053bSBarry Smith S*/
2177e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD;
2178e884886fSBarry Smith 
217976bdecfbSBarry Smith /*J
21802ef1f0ffSBarry Smith    MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function
2181e884886fSBarry Smith 
218216a05f60SBarry Smith    Values:
2183af27ebaaSBarry Smith +   `MATMFFD_DS` - an algorithm described by Dennis and Schnabel {cite}`dennis:83`
2184af27ebaaSBarry Smith -   `MATMFFD_WP` - the Walker-Pernice {cite}`pw98` strategy.
218516a05f60SBarry Smith 
2186e884886fSBarry Smith    Level: beginner
2187e884886fSBarry Smith 
21881cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()`
218976bdecfbSBarry Smith J*/
219019fd82e9SBarry Smith typedef const char *MatMFFDType;
2191e884886fSBarry Smith #define MATMFFD_DS "ds"
2192e884886fSBarry Smith #define MATMFFD_WP "wp"
2193e884886fSBarry Smith 
219419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType);
2195bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD));
2196e884886fSBarry Smith 
2197014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal);
2198014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool);
2199e884886fSBarry Smith 
220061ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType);
220161ab5df0SBarry Smith 
2202014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *);
2203014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *);
22047dbadf16SMatthew Knepley 
220553022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS
22068434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscScalar(MatH2OpusKernelFn)(PetscInt, PetscReal[], PetscReal[], void *);
22078434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatH2OpusKernelFn *MatH2OpusKernel;
2208659ebe53SBarry Smith 
22098434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernelFn *, void *, PetscReal, PetscInt, PetscInt, Mat *);
221053022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *);
221153022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal);
221253022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat);
221353022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal);
221453022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool);
221553022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *);
221653022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *);
221753022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *);
2218300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar);
2219a0d2e7d8SStefano Zampini #endif
2220a0d2e7d8SStefano Zampini 
2221c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL
22228434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode(MatHtoolKernelFn)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *);
22238434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatHtoolKernelFn *MatHtoolKernel;
2224659ebe53SBarry Smith 
22258434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernelFn *, void *, Mat *);
22268434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernelFn *, void *);
222798e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *);
222898e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *);
222998e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool);
22302ef1f0ffSBarry Smith 
2231c7a4214aSPierre Jolivet /*E
223287497f52SBarry Smith    MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL`
2233c7a4214aSPierre Jolivet 
2234c7a4214aSPierre Jolivet    Values:
223587497f52SBarry Smith +  `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation
223687497f52SBarry Smith .  `MAT_HTOOL_COMPRESSOR_FULL_ACA`                 - full adaptive cross approximation
223787497f52SBarry Smith -  `MAT_HTOOL_COMPRESSOR_SVD`                      - singular value decomposition
2238c7a4214aSPierre Jolivet 
223916a05f60SBarry Smith    Level: intermediate
224016a05f60SBarry Smith 
22411cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType`
2242c7a4214aSPierre Jolivet E*/
22439371c9d4SSatish Balay typedef enum {
22449371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA,
22459371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_FULL_ACA,
22469371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SVD
22479371c9d4SSatish Balay } MatHtoolCompressorType;
22482ef1f0ffSBarry Smith 
224998e73e17SPierre Jolivet /*E
225087497f52SBarry Smith    MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL`
225198e73e17SPierre Jolivet 
225298e73e17SPierre Jolivet    Values:
225387497f52SBarry Smith +  `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default)    - axis computed via principle component analysis, split uniformly
225487497f52SBarry Smith .  `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC`            - axis computed via principle component analysis, split barycentrically
225587497f52SBarry Smith .  `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR`   - axis along the largest extent of the bounding box, split uniformly
225687497f52SBarry Smith -  `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically
225798e73e17SPierre Jolivet 
225816a05f60SBarry Smith    Level: intermediate
225916a05f60SBarry Smith 
22602ef1f0ffSBarry Smith    Note:
22612ef1f0ffSBarry Smith    Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types
226298e73e17SPierre Jolivet 
22631cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType`
226498e73e17SPierre Jolivet E*/
22659371c9d4SSatish Balay typedef enum {
22669371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_REGULAR,
22679371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC,
22689371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR,
22699371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC
22709371c9d4SSatish Balay } MatHtoolClusteringType;
2271c7a4214aSPierre Jolivet #endif
2272c7a4214aSPierre Jolivet 
227397969023SHong Zhang #ifdef PETSC_HAVE_MUMPS
2274014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt);
2275bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *);
2276b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal);
2277bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *);
2278bc6112feSHong Zhang 
2279ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *);
2280ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *);
2281ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *);
2282ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *);
22835c0bae8cSAshish Patel PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **);
228489a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat);
22850e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat);
228697969023SHong Zhang #endif
228723a5497aSJed Brown 
2288b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO
2289d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt);
2290b500a6b7SJose David Bermeol #endif
2291b500a6b7SJose David Bermeol 
2292d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO
2293d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt);
2294d305a81bSVasiliy Kozyrev #endif
2295d305a81bSVasiliy Kozyrev 
2296d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU
2297014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal);
2298d954db57SHong Zhang #endif
2299d954db57SHong Zhang 
2300fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST
2301fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *);
2302fb785984SHong Zhang #endif
2303fb785984SHong Zhang 
2304575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK
2305542aee0fSPieter Ghysels /*E
230629e0a805SPieter Ghysels     MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK`
2307542aee0fSPieter Ghysels 
23082ef1f0ffSBarry Smith     Values:
23092ef1f0ffSBarry Smith +  `MAT_STRUMPACK_NATURAL`   - use the current ordering
23102ef1f0ffSBarry Smith .  `MAT_STRUMPACK_METIS`     - use MeTis to compute an ordering
23112ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PARMETIS`  - use ParMeTis to compute an ordering
23122ef1f0ffSBarry Smith .  `MAT_STRUMPACK_SCOTCH`    - use Scotch to compute an ordering
23132ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PTSCOTCH`  - use parallel Scotch to compute an ordering
231429e0a805SPieter Ghysels .  `MAT_STRUMPACK_RCM`       - use an RCM ordering
231529e0a805SPieter Ghysels .  `MAT_STRUMPACK_GEOMETRIC` - use a geometric ordering (needs mesh info from user)
231629e0a805SPieter Ghysels .  `MAT_STRUMPACK_AMD`       - approximate minimum degree
231729e0a805SPieter Ghysels .  `MAT_STRUMPACK_MMD`       - multiple minimum degree
231829e0a805SPieter Ghysels .  `MAT_STRUMPACK_AND`       - approximate nested dissection
231929e0a805SPieter Ghysels .  `MAT_STRUMPACK_MLF`       - minimum local fill
232029e0a805SPieter Ghysels -  `MAT_STRUMPACK_SPECTRAL`  - spectral nested dissection
23212ef1f0ffSBarry Smith 
232216a05f60SBarry Smith     Level: intermediate
232316a05f60SBarry Smith 
23242ef1f0ffSBarry Smith     Developer Note:
23252ef1f0ffSBarry Smith     Should be called `MatSTRUMPACKReorderingType`
23262ef1f0ffSBarry Smith 
232729e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetReordering()`
2328542aee0fSPieter Ghysels E*/
23299371c9d4SSatish Balay typedef enum {
233029e0a805SPieter Ghysels   MAT_STRUMPACK_NATURAL,
233129e0a805SPieter Ghysels   MAT_STRUMPACK_METIS,
233229e0a805SPieter Ghysels   MAT_STRUMPACK_PARMETIS,
233329e0a805SPieter Ghysels   MAT_STRUMPACK_SCOTCH,
233429e0a805SPieter Ghysels   MAT_STRUMPACK_PTSCOTCH,
233529e0a805SPieter Ghysels   MAT_STRUMPACK_RCM,
233629e0a805SPieter Ghysels   MAT_STRUMPACK_GEOMETRIC,
233729e0a805SPieter Ghysels   MAT_STRUMPACK_AMD,
233829e0a805SPieter Ghysels   MAT_STRUMPACK_MMD,
233929e0a805SPieter Ghysels   MAT_STRUMPACK_AND,
234029e0a805SPieter Ghysels   MAT_STRUMPACK_MLF,
234129e0a805SPieter Ghysels   MAT_STRUMPACK_SPECTRAL
23429371c9d4SSatish Balay } MatSTRUMPACKReordering;
23432ef1f0ffSBarry Smith 
234434f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering);
234529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetReordering(Mat, MatSTRUMPACKReordering *);
234629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricNxyz(Mat, PetscInt, PetscInt, PetscInt);
234729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricComponents(Mat, PetscInt);
234829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricWidth(Mat, PetscInt);
2349575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool);
235029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetColPerm(Mat, PetscBool *);
235129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGPU(Mat, PetscBool);
235229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetGPU(Mat, PetscBool *);
235329e0a805SPieter Ghysels 
235429e0a805SPieter Ghysels /*E
235529e0a805SPieter Ghysels     MatSTRUMPACKCompressionType - Compression used in the approximate sparse factorization solver `MATSOLVERSTRUMPACK`
235629e0a805SPieter Ghysels 
235729e0a805SPieter Ghysels     Values:
235829e0a805SPieter Ghysels +  `MAT_STRUMPACK_COMPRESSION_TYPE_NONE`          - no compression, direct solver
235929e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_HSS`           - hierarchically semi-separable
236029e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_BLR`           - block low rank
236129e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_HODLR`         - hierarchically off-diagonal low rank (requires ButterfyPACK support, configure with --download-butterflypack)
236229e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR`     - hybrid of BLR and HODLR (requires ButterfyPACK support, configure with --download-butterflypack)
236329e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR` - hybrid of lossy (ZFP), BLR and HODLR (requires ButterfyPACK and ZFP support, configure with --download-butterflypack --download-zfp)
236429e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS`      - lossless compression (requires ZFP support, configure with --download-zfp)
236529e0a805SPieter Ghysels -  `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY`         - lossy compression (requires ZFP support, configure with --download-zfp)
236629e0a805SPieter Ghysels 
236729e0a805SPieter Ghysels     Level: intermediate
236829e0a805SPieter Ghysels 
236929e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetCompression()`
237029e0a805SPieter Ghysels E*/
237129e0a805SPieter Ghysels typedef enum {
237229e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_NONE,
237329e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_HSS,
237429e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_BLR,
237529e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_HODLR,
237629e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR,
237729e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR,
237829e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS,
237929e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY
238029e0a805SPieter Ghysels } MatSTRUMPACKCompressionType;
238129e0a805SPieter Ghysels 
238229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompression(Mat, MatSTRUMPACKCompressionType);
238329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompression(Mat, MatSTRUMPACKCompressionType *);
238429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompRelTol(Mat, PetscReal);
238529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompRelTol(Mat, PetscReal *);
238629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompAbsTol(Mat, PetscReal);
238729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompAbsTol(Mat, PetscReal *);
238829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompMinSepSize(Mat, PetscInt);
238929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompMinSepSize(Mat, PetscInt *);
239029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLeafSize(Mat, PetscInt);
239129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLeafSize(Mat, PetscInt *);
239229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLossyPrecision(Mat, PetscInt);
239329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLossyPrecision(Mat, PetscInt *);
239429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompButterflyLevels(Mat, PetscInt);
239529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompButterflyLevels(Mat, PetscInt *);
2396575704cbSPieter Ghysels #endif
2397575704cbSPieter Ghysels 
2398b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool);
23992216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *);
2400edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 13, 0, "MatBindToCPU()", ) static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg)
2401d71ae5a4SJacob Faibussowitsch {
24029371c9d4SSatish Balay   return MatBindToCPU(A, flg);
24039371c9d4SSatish Balay }
240465a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool);
2405e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *);
2406e7e92044SBarry Smith 
2407aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA
24083f9c0db1SPaul Mullowney /*E
24092ef1f0ffSBarry Smith     MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU)
24102692e278SPaul Mullowney     matrices.
2411e057df02SPaul Mullowney 
24122ef1f0ffSBarry Smith     Values:
241387497f52SBarry Smith +   `MAT_CUSPARSE_CSR` - Compressed Sparse Row
241487497f52SBarry Smith .   `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later).
241587497f52SBarry Smith -   `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later).
2416e057df02SPaul Mullowney 
2417e057df02SPaul Mullowney     Level: intermediate
2418e057df02SPaul Mullowney 
24191cc06b55SBarry Smith .seealso: [](ch_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation`
2420e057df02SPaul Mullowney E*/
2421e057df02SPaul Mullowney 
24229371c9d4SSatish Balay typedef enum {
24239371c9d4SSatish Balay   MAT_CUSPARSE_CSR,
24249371c9d4SSatish Balay   MAT_CUSPARSE_ELL,
24259371c9d4SSatish Balay   MAT_CUSPARSE_HYB
24269371c9d4SSatish Balay } MatCUSPARSEStorageFormat;
2427e057df02SPaul Mullowney 
2428e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */
2429e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[];
2430e057df02SPaul Mullowney 
24313f9c0db1SPaul Mullowney /*E
24322ef1f0ffSBarry Smith     MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU)
24332692e278SPaul Mullowney     matrices whose operation should use a particular storage format.
2434e057df02SPaul Mullowney 
24352ef1f0ffSBarry Smith     Values:
24364cf0e950SBarry Smith +   `MAT_CUSPARSE_MULT_DIAG`    - sets the storage format for the diagonal matrix in the parallel `MatMult()`
24374cf0e950SBarry Smith .   `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()`
24384cf0e950SBarry Smith .   `MAT_CUSPARSE_MULT`         - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()`
24392ef1f0ffSBarry Smith -   `MAT_CUSPARSE_ALL`          - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices
2440e057df02SPaul Mullowney 
2441e057df02SPaul Mullowney     Level: intermediate
2442e057df02SPaul Mullowney 
24431cc06b55SBarry Smith .seealso: [](ch_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat`
2444e057df02SPaul Mullowney E*/
24459371c9d4SSatish Balay typedef enum {
24469371c9d4SSatish Balay   MAT_CUSPARSE_MULT_DIAG,
24479371c9d4SSatish Balay   MAT_CUSPARSE_MULT_OFFDIAG,
24489371c9d4SSatish Balay   MAT_CUSPARSE_MULT,
24499371c9d4SSatish Balay   MAT_CUSPARSE_ALL
24509371c9d4SSatish Balay } MatCUSPARSEFormatOperation;
2451e057df02SPaul Mullowney 
245210e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
245310e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2454e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat);
2455365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool);
24565f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
24575f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
24585f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **);
24595f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **);
24605f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **);
24615f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **);
24625f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **);
24635f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **);
2464637a0070SStefano Zampini 
2465637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
2466637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
2467637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **);
2468637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **);
2469637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **);
2470637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **);
2471637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **);
2472637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **);
2473637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *);
2474d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *);
2475637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat);
24763d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *);
24772d1451d4SHong Zhang 
24782d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
24792d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
24809ae82921SPaul Mullowney #endif
24819ae82921SPaul Mullowney 
248247d993e7Ssuyashtn #ifdef PETSC_HAVE_HIP
248347d993e7Ssuyashtn /*E
24842ef1f0ffSBarry Smith     MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU)
248547d993e7Ssuyashtn     matrices.
248647d993e7Ssuyashtn 
24872ef1f0ffSBarry Smith     Values:
24882ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_CSR` - Compressed Sparse Row
24892ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_ELL` - Ellpack
24902ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format
249147d993e7Ssuyashtn 
249216a05f60SBarry Smith     Level: intermediate
249316a05f60SBarry Smith 
24941cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation`
249547d993e7Ssuyashtn E*/
249647d993e7Ssuyashtn 
249747d993e7Ssuyashtn typedef enum {
249847d993e7Ssuyashtn   MAT_HIPSPARSE_CSR,
249947d993e7Ssuyashtn   MAT_HIPSPARSE_ELL,
250047d993e7Ssuyashtn   MAT_HIPSPARSE_HYB
250147d993e7Ssuyashtn } MatHIPSPARSEStorageFormat;
250247d993e7Ssuyashtn 
250347d993e7Ssuyashtn /* these will be strings associated with enumerated type defined above */
250447d993e7Ssuyashtn PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[];
250547d993e7Ssuyashtn 
250647d993e7Ssuyashtn /*E
25072ef1f0ffSBarry Smith     MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU)
250847d993e7Ssuyashtn     matrices whose operation should use a particular storage format.
250947d993e7Ssuyashtn 
25102ef1f0ffSBarry Smith     Values:
25112ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_MULT_DIAG`    - sets the storage format for the diagonal matrix in the parallel `MatMult()`
25124cf0e950SBarry Smith .   `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()`
25132ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_MULT`         - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()`
25142ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_ALL`          - sets the storage format for all HIPSPARSE (GPU) matrices
25152ef1f0ffSBarry Smith 
251616a05f60SBarry Smith     Level: intermediate
251716a05f60SBarry Smith 
25181cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat`
251947d993e7Ssuyashtn E*/
252047d993e7Ssuyashtn typedef enum {
252147d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_DIAG,
252247d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_OFFDIAG,
252347d993e7Ssuyashtn   MAT_HIPSPARSE_MULT,
252447d993e7Ssuyashtn   MAT_HIPSPARSE_ALL
252547d993e7Ssuyashtn } MatHIPSPARSEFormatOperation;
252647d993e7Ssuyashtn 
252747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
252847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
252947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat);
253047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool);
253147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
253247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
253347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **);
253447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **);
253547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **);
253647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **);
253747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **);
253847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **);
253947d993e7Ssuyashtn 
254047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
254147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
254247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **);
254347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **);
254447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **);
254547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **);
254647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **);
254747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **);
254847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *);
254947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *);
255047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat);
25513d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *);
2552773bf0f6SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2553773bf0f6SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
255447d993e7Ssuyashtn #endif
255547d993e7Ssuyashtn 
2556d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL)
2557d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2558d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2559d67ff14aSKarl Rupp #endif
2560d67ff14aSKarl Rupp 
25614bf303faSJacob Faibussowitsch #if PetscDefined(HAVE_KOKKOS)
25624bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
25634bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
25644bf303faSJacob Faibussowitsch #endif
25654bf303faSJacob Faibussowitsch 
256654efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW)
2567014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec);
2568014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec);
25692a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *);
257054efbe56SHong Zhang #endif
257154efbe56SHong Zhang 
2572d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
2573d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2574d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt);
2575d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *);
2576d24d4204SJose E. Roman #endif
2577d24d4204SJose E. Roman 
2578014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *);
2579014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *);
2580014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]);
2581014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]);
2582014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***);
2583014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *);
258419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType);
2585014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]);
2586014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat);
2587d8588912SDave May 
25882ce66baaSPierre Jolivet PETSC_EXTERN PetscErrorCode MatFilter(Mat, PetscReal, PetscBool, PetscBool);
25892ce66baaSPierre Jolivet PETSC_DEPRECATED_FUNCTION(3, 20, 0, "MatFilter()", ) static inline PetscErrorCode MatChop(Mat A, PetscReal tol)
25902ce66baaSPierre Jolivet {
25912ce66baaSPierre Jolivet   return MatFilter(A, tol, PETSC_FALSE, PETSC_FALSE);
25922ce66baaSPierre Jolivet }
2593e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *);
25944325cce7SMatthew G Knepley 
2595b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **);
259653dd7562SDmitry Karpeev 
2597c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat);
2598c094ef40SMatthew G. Knepley 
259902218ef1SBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderMerge(Mat, Mat *);
2600539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *);
26011a2c6b5cSJunchao Zhang 
26027ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *);
260372833a62Smarkadams4 
2604e02fb3cdSMark Adams PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, PetscInt, PetscInt[], Mat *);
260558c11ad4SPierre Jolivet PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat, PetscBool);
2606ad6ad4e1SHansol  Suh 
2607d16ceb75SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *);
26083444e80cSBarry Smith 
26093444e80cSBarry Smith PETSC_EXTERN PetscErrorCode MatSetHPL(Mat, int);
26103444e80cSBarry Smith #define PETSCBMHPL "hpl"
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