xref: /petsc/include/petscmat.h (revision 20c04d79ebae2dd91ecc0bd80828e50b296ce59e)
12eac72dbSBarry Smith /*
22eac72dbSBarry Smith      Include file for the matrix component of PETSc
32eac72dbSBarry Smith */
426bd1501SBarry Smith #ifndef PETSCMAT_H
526bd1501SBarry Smith #define PETSCMAT_H
6ac09b921SBarry Smith 
72c8e378dSBarry Smith #include <petscvec.h>
82eac72dbSBarry Smith 
9ac09b921SBarry Smith /* SUBMANSEC = Mat */
10ac09b921SBarry Smith 
11d9274352SBarry Smith /*S
128f6c3df8SBarry Smith      Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without
138f6c3df8SBarry Smith            an explicit sparse representation (such as matrix-free operators)
142eac72dbSBarry Smith 
15d91e6319SBarry Smith    Level: beginner
16d91e6319SBarry Smith 
172ef1f0ffSBarry Smith    Note:
181cc06b55SBarry Smith    See [](doc_matrix), [](ch_matrices) and `MatType` for available matrix types
192ef1f0ffSBarry Smith 
201cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()`
21d9274352SBarry Smith S*/
22d9274352SBarry Smith typedef struct _p_Mat *Mat;
23d9274352SBarry Smith 
2476bdecfbSBarry Smith /*J
258f6c3df8SBarry Smith     MatType - String with the name of a PETSc matrix type
26d9274352SBarry Smith 
27d9274352SBarry Smith    Level: beginner
28d9274352SBarry Smith 
292ef1f0ffSBarry Smith    Note:
302ef1f0ffSBarry Smith    [](doc_matrix) for a table of available matrix types
312ef1f0ffSBarry Smith 
321cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()`
3376bdecfbSBarry Smith J*/
3419fd82e9SBarry Smith typedef const char *MatType;
35273d9f13SBarry Smith #define MATSAME                      "same"
365a11e1b2SBarry Smith #define MATMAIJ                      "maij"
37273d9f13SBarry Smith #define MATSEQMAIJ                   "seqmaij"
38273d9f13SBarry Smith #define MATMPIMAIJ                   "mpimaij"
3949bd79ccSDebojyoti Ghosh #define MATKAIJ                      "kaij"
4049bd79ccSDebojyoti Ghosh #define MATSEQKAIJ                   "seqkaij"
4149bd79ccSDebojyoti Ghosh #define MATMPIKAIJ                   "mpikaij"
42273d9f13SBarry Smith #define MATIS                        "is"
435a11e1b2SBarry Smith #define MATAIJ                       "aij"
44273d9f13SBarry Smith #define MATSEQAIJ                    "seqaij"
45273d9f13SBarry Smith #define MATMPIAIJ                    "mpiaij"
465a11e1b2SBarry Smith #define MATAIJCRL                    "aijcrl"
475a11e1b2SBarry Smith #define MATSEQAIJCRL                 "seqaijcrl"
485a11e1b2SBarry Smith #define MATMPIAIJCRL                 "mpiaijcrl"
499ae82921SPaul Mullowney #define MATAIJCUSPARSE               "aijcusparse"
509ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE            "seqaijcusparse"
519ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE            "mpiaijcusparse"
5247d993e7Ssuyashtn #define MATAIJHIPSPARSE              "aijhipsparse"
5347d993e7Ssuyashtn #define MATSEQAIJHIPSPARSE           "seqaijhipsparse"
5447d993e7Ssuyashtn #define MATMPIAIJHIPSPARSE           "mpiaijhipsparse"
558c3ff71bSJunchao Zhang #define MATAIJKOKKOS                 "aijkokkos"
568c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS              "seqaijkokkos"
578c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS              "mpiaijkokkos"
58d67ff14aSKarl Rupp #define MATAIJVIENNACL               "aijviennacl"
59d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL            "seqaijviennacl"
60d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL            "mpiaijviennacl"
615a11e1b2SBarry Smith #define MATAIJPERM                   "aijperm"
625a11e1b2SBarry Smith #define MATSEQAIJPERM                "seqaijperm"
635a11e1b2SBarry Smith #define MATMPIAIJPERM                "mpiaijperm"
644dfdc2d9SRichard Tran Mills #define MATAIJSELL                   "aijsell"
654dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL                "seqaijsell"
664dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL                "mpiaijsell"
674a2a386eSRichard Tran Mills #define MATAIJMKL                    "aijmkl"
684a2a386eSRichard Tran Mills #define MATSEQAIJMKL                 "seqaijmkl"
694a2a386eSRichard Tran Mills #define MATMPIAIJMKL                 "mpiaijmkl"
70b5b72c8aSIrina Sokolova #define MATBAIJMKL                   "baijmkl"
71b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL                "seqbaijmkl"
72b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL                "mpibaijmkl"
73273d9f13SBarry Smith #define MATSHELL                     "shell"
74c1fff1c6SRichard Tran Mills #define MATCENTERING                 "centering"
755a11e1b2SBarry Smith #define MATDENSE                     "dense"
76637a0070SStefano Zampini #define MATDENSECUDA                 "densecuda"
7747d993e7Ssuyashtn #define MATDENSEHIP                  "densehip"
78209238afSKris Buschelman #define MATSEQDENSE                  "seqdense"
79bfc799aaSStefano Zampini #define MATSEQDENSECUDA              "seqdensecuda"
8047d993e7Ssuyashtn #define MATSEQDENSEHIP               "seqdensehip"
81273d9f13SBarry Smith #define MATMPIDENSE                  "mpidense"
82637a0070SStefano Zampini #define MATMPIDENSECUDA              "mpidensecuda"
8347d993e7Ssuyashtn #define MATMPIDENSEHIP               "mpidensehip"
84db31f6deSJed Brown #define MATELEMENTAL                 "elemental"
85d24d4204SJose E. Roman #define MATSCALAPACK                 "scalapack"
865a11e1b2SBarry Smith #define MATBAIJ                      "baij"
87273d9f13SBarry Smith #define MATSEQBAIJ                   "seqbaij"
88273d9f13SBarry Smith #define MATMPIBAIJ                   "mpibaij"
89273d9f13SBarry Smith #define MATMPIADJ                    "mpiadj"
905a11e1b2SBarry Smith #define MATSBAIJ                     "sbaij"
91273d9f13SBarry Smith #define MATSEQSBAIJ                  "seqsbaij"
92273d9f13SBarry Smith #define MATMPISBAIJ                  "mpisbaij"
93cebc7f6cSBarry Smith #define MATMFFD                      "mffd"
94c8a8475eSBarry Smith #define MATNORMAL                    "normal"
95c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN           "normalh"
96ab92ecdeSBarry Smith #define MATLRC                       "lrc"
972a6744ebSBarry Smith #define MATSCATTER                   "scatter"
98421e10b8SBarry Smith #define MATBLOCKMAT                  "blockmat"
99793850ffSBarry Smith #define MATCOMPOSITE                 "composite"
1001f8c7532SHong Zhang #define MATFFT                       "fft"
1011f8c7532SHong Zhang #define MATFFTW                      "fftw"
102e133240eSMatthew G Knepley #define MATSEQCUFFT                  "seqcufft"
10347d993e7Ssuyashtn #define MATSEQHIPFFT                 "seqhipfft"
104edd03b47SJacob Faibussowitsch #define MATTRANSPOSEMAT              PETSC_DEPRECATED_MACRO(3, 18, 0, "MATTRANSPOSEVIRTUAL", ) "transpose"
105013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL          "transpose"
106013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose"
10772ca8751SBarry Smith #define MATSCHURCOMPLEMENT           "schurcomplement"
1081d6018f0SLisandro Dalcin #define MATPYTHON                    "python"
10963c07aadSStefano Zampini #define MATHYPRE                     "hypre"
110f91d8e95SBarry Smith #define MATHYPRESTRUCT               "hyprestruct"
111a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT              "hypresstruct"
112ee1cef2cSJed Brown #define MATSUBMATRIX                 "submatrix"
1132c0dbf93SJed Brown #define MATLOCALREF                  "localref"
114d8588912SDave May #define MATNEST                      "nest"
115c094ef40SMatthew G. Knepley #define MATPREALLOCATOR              "preallocator"
116d4002b98SHong Zhang #define MATSELL                      "sell"
117d4002b98SHong Zhang #define MATSEQSELL                   "seqsell"
118d4002b98SHong Zhang #define MATMPISELL                   "mpisell"
1192d1451d4SHong Zhang #define MATSELLCUDA                  "sellcuda"
1202d1451d4SHong Zhang #define MATSEQSELLCUDA               "seqsellcuda"
1212d1451d4SHong Zhang #define MATMPISELLCUDA               "mpisellcuda"
122a3b2e22bSHong Zhang #define MATDUMMY                     "dummy"
123cd929ea3SAlp Dener #define MATLMVM                      "lmvm"
12478e4361aSAlp Dener #define MATLMVMDFP                   "lmvmdfp"
12578e4361aSAlp Dener #define MATLMVMBFGS                  "lmvmbfgs"
12678e4361aSAlp Dener #define MATLMVMSR1                   "lmvmsr1"
127864588a7SAlp Dener #define MATLMVMBROYDEN               "lmvmbroyden"
128864588a7SAlp Dener #define MATLMVMBADBROYDEN            "lmvmbadbroyden"
129864588a7SAlp Dener #define MATLMVMSYMBROYDEN            "lmvmsymbroyden"
130864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN         "lmvmsymbadbroyden"
131864588a7SAlp Dener #define MATLMVMDIAGBROYDEN           "lmvmdiagbroyden"
1323423f386SBarry Smith #define MATCONSTANTDIAGONAL          "constantdiagonal"
133345a4b08SToby Isaac #define MATDIAGONAL                  "diagonal"
134c7a4214aSPierre Jolivet #define MATHTOOL                     "htool"
13553022affSStefano Zampini #define MATH2OPUS                    "h2opus"
136773941d6SBarry Smith 
13776bdecfbSBarry Smith /*J
13816a05f60SBarry Smith     MatSolverType - String with the name of a PETSc factorization based matrix solver type.
1399989ab13SBarry Smith 
140c2b89b5dSBarry Smith     For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc
1419989ab13SBarry Smith 
1429989ab13SBarry Smith    Level: beginner
1439989ab13SBarry Smith 
1442ef1f0ffSBarry Smith    Note:
14516a05f60SBarry Smith    `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as
14616a05f60SBarry Smith    a ./configure option to install them
147c7ccbb75SBarry Smith 
1481cc06b55SBarry Smith .seealso: [](sec_matfactor), [](ch_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()`
14976bdecfbSBarry Smith J*/
150ea799195SBarry Smith typedef const char *MatSolverType;
1512692d6eeSBarry Smith #define MATSOLVERSUPERLU      "superlu"
1522692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST "superlu_dist"
15308f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK    "strumpack"
1542692d6eeSBarry Smith #define MATSOLVERUMFPACK      "umfpack"
15520db9a53SJed Brown #define MATSOLVERCHOLMOD      "cholmod"
156d89f5e7aSBarry Smith #define MATSOLVERKLU          "klu"
157d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL    "elemental"
158d24d4204SJose E. Roman #define MATSOLVERSCALAPACK    "scalapack"
1592692d6eeSBarry Smith #define MATSOLVERESSL         "essl"
1602692d6eeSBarry Smith #define MATSOLVERLUSOL        "lusol"
1612692d6eeSBarry Smith #define MATSOLVERMUMPS        "mumps"
162d615f992SSatish Balay #define MATSOLVERMKL_PARDISO  "mkl_pardiso"
163d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO "mkl_cpardiso"
1642692d6eeSBarry Smith #define MATSOLVERPASTIX       "pastix"
1652692d6eeSBarry Smith #define MATSOLVERMATLAB       "matlab"
1662692d6eeSBarry Smith #define MATSOLVERPETSC        "petsc"
1672692d6eeSBarry Smith #define MATSOLVERBAS          "bas"
1689ae82921SPaul Mullowney #define MATSOLVERCUSPARSE     "cusparse"
169bfc799aaSStefano Zampini #define MATSOLVERCUDA         "cuda"
17047d993e7Ssuyashtn #define MATSOLVERHIPSPARSE    "hipsparse"
17147d993e7Ssuyashtn #define MATSOLVERHIP          "hip"
172930e68a5SMark Adams #define MATSOLVERKOKKOS       "kokkos"
173a2fc1e05SToby Isaac #define MATSOLVERSPQR         "spqr"
174c0cdd4a1SDahai Guo 
175b24902e0SBarry Smith /*E
176b24902e0SBarry Smith     MatFactorType - indicates what type of factorization is requested
177b24902e0SBarry Smith 
1782ef1f0ffSBarry Smith     Values:
1792ef1f0ffSBarry Smith +  `MAT_FACTOR_LU` - LU factorization
1802ef1f0ffSBarry Smith .  `MAT_FACTOR_CHOLESKY` - Cholesky factorization
1812ef1f0ffSBarry Smith .  `MAT_FACTOR_ILU` - ILU factorization
1822ef1f0ffSBarry Smith .  `MAT_FACTOR_ICC` - incomplete Cholesky factorization
1832ef1f0ffSBarry Smith .  `MAT_FACTOR_ILUDT` - ILU factorization with drop tolerance
1842ef1f0ffSBarry Smith -  `MAT_FACTOR_QR` - QR factorization
185b24902e0SBarry Smith 
18616a05f60SBarry Smith     Level: beginner
18716a05f60SBarry Smith 
1881cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()`
189b24902e0SBarry Smith E*/
1909371c9d4SSatish Balay typedef enum {
1919371c9d4SSatish Balay   MAT_FACTOR_NONE,
1929371c9d4SSatish Balay   MAT_FACTOR_LU,
1939371c9d4SSatish Balay   MAT_FACTOR_CHOLESKY,
1949371c9d4SSatish Balay   MAT_FACTOR_ILU,
1959371c9d4SSatish Balay   MAT_FACTOR_ICC,
1969371c9d4SSatish Balay   MAT_FACTOR_ILUDT,
1979371c9d4SSatish Balay   MAT_FACTOR_QR,
1989371c9d4SSatish Balay   MAT_FACTOR_NUM_TYPES
1999371c9d4SSatish Balay } MatFactorType;
200014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[];
201e92e720dSBarry Smith 
202ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *);
203ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *);
204f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *);
205edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 15, 0, "MatFactorGetCanUseOrdering()", ) static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b)
206d71ae5a4SJacob Faibussowitsch {
2079371c9d4SSatish Balay   return MatFactorGetCanUseOrdering(A, b);
2089371c9d4SSatish Balay }
209ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *);
210014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *);
2117abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType);
2122430ea28SJose E. Roman PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatSolverFunction)(Mat, MatFactorType, Mat *);
2132430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFunction);
2142430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFunction *);
215edd03b47SJacob Faibussowitsch typedef MatSolverType       MatSolverPackage PETSC_DEPRECATED_TYPEDEF(3, 9, 0, "MatSolverType", );
216edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeRegister()", ) static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFunction f)
217d71ae5a4SJacob Faibussowitsch {
2189371c9d4SSatish Balay   return MatSolverTypeRegister(stype, mtype, ftype, f);
2199371c9d4SSatish Balay }
220edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeGet()", ) static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFunction *f)
221d71ae5a4SJacob Faibussowitsch {
2229371c9d4SSatish Balay   return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f);
2239371c9d4SSatish Balay }
2249989ab13SBarry Smith 
2254222ddf1SHong Zhang /*E
2264222ddf1SHong Zhang     MatProductType - indicates what type of matrix product is requested
2274222ddf1SHong Zhang 
2282ef1f0ffSBarry Smith     Values:
2292ef1f0ffSBarry Smith +  `MATPRODUCT_AB` - product of two matrices
2302ef1f0ffSBarry Smith .  `MATPRODUCT_AtB` - product of the transpose of a given matrix with a matrix
2312ef1f0ffSBarry Smith .  `MATPRODUCT_ABt` - product of a matrix with the transpose of another given matrix
2322ef1f0ffSBarry Smith .  `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself
2332ef1f0ffSBarry Smith .  `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix
2342ef1f0ffSBarry Smith -  `MATPRODUCT_ABC` - the product of three matrices
2352ef1f0ffSBarry Smith 
23616a05f60SBarry Smith     Level: beginner
23716a05f60SBarry Smith 
2381cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatProductSetType()`
2394222ddf1SHong Zhang E*/
2409371c9d4SSatish Balay typedef enum {
2419371c9d4SSatish Balay   MATPRODUCT_UNSPECIFIED = 0,
2429371c9d4SSatish Balay   MATPRODUCT_AB,
2439371c9d4SSatish Balay   MATPRODUCT_AtB,
2449371c9d4SSatish Balay   MATPRODUCT_ABt,
2459371c9d4SSatish Balay   MATPRODUCT_PtAP,
2469371c9d4SSatish Balay   MATPRODUCT_RARt,
2479371c9d4SSatish Balay   MATPRODUCT_ABC
2489371c9d4SSatish Balay } MatProductType;
249544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[];
2504222ddf1SHong Zhang 
2514222ddf1SHong Zhang /*J
2524222ddf1SHong Zhang     MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation
2534222ddf1SHong Zhang 
2544222ddf1SHong Zhang    Level: beginner
2554222ddf1SHong Zhang 
2561cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType`
2574222ddf1SHong Zhang J*/
2584222ddf1SHong Zhang typedef const char *MatProductAlgorithm;
2593e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT         "default"
2603e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED          "sorted"
2613e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE        "scalable"
2623e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST    "scalable_fast"
2633e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP            "heap"
2643e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP           "btheap"
2653e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED     "llcondensed"
2663e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE        "rowmerge"
2673e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT    "outerproduct"
2683e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB             "at*b"
2693e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP             "rap"
2703e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE     "nonscalable"
2713e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI          "seqmpi"
2723e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND         "backend"
2733e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING     "overlapping"
2743e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED          "merged"
2753e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE       "allatonce"
2763e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged"
2773e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV      "allgatherv"
2783e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC          "cyclic"
2793e662e0bSHong Zhang #if defined(PETSC_HAVE_HYPRE)
2803e662e0bSHong Zhang   #define MATPRODUCTALGORITHMHYPRE "hypre"
2813e662e0bSHong Zhang #endif
2824222ddf1SHong Zhang 
2834222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *);
2844222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat);
2854222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType);
2864222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm);
2874222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal);
2884222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat);
2894222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat);
2904222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat);
2914222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat);
2924417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat);
2936718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer);
294c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *);
295c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *);
2964222ddf1SHong Zhang 
297c06d978dSMatthew Knepley /* Logging support */
2980700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */
299014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID;
300335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID;
301014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID;
302014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID;
303014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID;
304014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID;
305014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID;
306014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID;
307c06d978dSMatthew Knepley 
308ceb03754SKris Buschelman /*E
3092ef1f0ffSBarry Smith     MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions
310cf37664fSBarry Smith      are to be reused to store the new matrix values.
311cf37664fSBarry Smith 
3122ef1f0ffSBarry Smith    Values:
3132ef1f0ffSBarry Smith +  `MAT_INITIAL_MATRIX` - create a new matrix
3142ef1f0ffSBarry Smith .  `MAT_REUSE_MATRIX` - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX`
3152ef1f0ffSBarry Smith .  `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions)
3162ef1f0ffSBarry Smith -  `MAT_IGNORE_MATRIX` - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions)
317ceb03754SKris Buschelman 
318ceb03754SKris Buschelman     Level: beginner
319ceb03754SKris Buschelman 
3201cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()`
321ceb03754SKris Buschelman E*/
3229371c9d4SSatish Balay typedef enum {
3239371c9d4SSatish Balay   MAT_INITIAL_MATRIX,
3249371c9d4SSatish Balay   MAT_REUSE_MATRIX,
3259371c9d4SSatish Balay   MAT_IGNORE_MATRIX,
3269371c9d4SSatish Balay   MAT_INPLACE_MATRIX
3279371c9d4SSatish Balay } MatReuse;
328ceb03754SKris Buschelman 
3295494a064SHong Zhang /*E
3302ef1f0ffSBarry Smith     MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()`
3312ef1f0ffSBarry Smith      include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`.
3325494a064SHong Zhang 
3332ef1f0ffSBarry Smith     Level: developer
3345494a064SHong Zhang 
3352ef1f0ffSBarry Smith     Values:
3362ef1f0ffSBarry Smith +  `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values
3372ef1f0ffSBarry Smith -  `MAT_GET_VALUES` - copy the matrix values
3382ef1f0ffSBarry Smith 
3392ef1f0ffSBarry Smith     Developer Note:
3402ef1f0ffSBarry Smith     Why is not just a boolean used for this information?
3412ef1f0ffSBarry Smith 
3421cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()`
3435494a064SHong Zhang E*/
3449371c9d4SSatish Balay typedef enum {
3459371c9d4SSatish Balay   MAT_DO_NOT_GET_VALUES,
3469371c9d4SSatish Balay   MAT_GET_VALUES
3479371c9d4SSatish Balay } MatCreateSubMatrixOption;
3485494a064SHong Zhang 
349607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void);
350c06d978dSMatthew Knepley 
351014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *);
352014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt);
35319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType);
3540d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *);
3550d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType);
356014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat);
357fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]);
358bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat));
35923bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]);
360014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]);
36126cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]);
36226cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]);
363014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]);
364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]);
36584d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool);
366f69a0ea3SMatthew Knepley 
367140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList;
368140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList;
369140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList;
37028988994SBarry Smith 
3713b224e63SBarry Smith /*E
372aa6c7ce3SBarry Smith     MatStructure - Indicates if two matrices have the same nonzero structure
3733b224e63SBarry Smith 
3742ef1f0ffSBarry Smith    Values:
3752ef1f0ffSBarry Smith +  `SAME_NONZERO_PATTERN`  - the two matrices have identical nonzero patterns
3762ef1f0ffSBarry Smith .  `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns
3772ef1f0ffSBarry Smith .  `SUBSET_NONZERO_PATTERN` - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix
3782ef1f0ffSBarry Smith -  `UNKNOWN_NONZERO_PATTERN` - there is no known relationship between the nonzero patterns. In this case the implementations
3792ef1f0ffSBarry Smith                                may try to detect a relationship to optimize the operation
380531d0c6aSBarry Smith 
38116a05f60SBarry Smith     Level: beginner
38216a05f60SBarry Smith 
3831cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()`
3843b224e63SBarry Smith E*/
3859371c9d4SSatish Balay typedef enum {
3869371c9d4SSatish Balay   DIFFERENT_NONZERO_PATTERN,
3879371c9d4SSatish Balay   SUBSET_NONZERO_PATTERN,
3889371c9d4SSatish Balay   SAME_NONZERO_PATTERN,
3899371c9d4SSatish Balay   UNKNOWN_NONZERO_PATTERN
3909371c9d4SSatish Balay } MatStructure;
391d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[];
3923b224e63SBarry Smith 
3939779e05dSSatish Balay #if defined                 PETSC_HAVE_MKL_SPARSE
394ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
395ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
39680095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
397ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
39880095d54SIrina Sokolova #endif
399cd929ea3SAlp Dener 
400d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
401d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
402d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]);
403d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
40407e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *);
40507e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *);
40607e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *);
40707e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt);
408b921024eSHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *);
40980095d54SIrina Sokolova 
410014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
411014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
412014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
413014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
414014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4158f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4166a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]);
417014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *);
4183b00a383SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *);
4193b00a383SHong Zhang 
420014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
421014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
422014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4237e8381f9SStefano Zampini 
424e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]);
42582a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]);
4267e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode);
427d21a29f3SJed Brown 
428014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *);
429014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
430d21a29f3SJed Brown 
431014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
432014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
43338f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
434014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4354cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]);
436dfb205c3SBarry Smith 
437014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *);
438c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *);
439014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *);
440c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *);
441986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *);
442267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *);
443bcf2175cSMatthew Knepley PETSC_EXTERN PetscErrorCode MatLRCSetMats(Mat, Mat, Mat, Vec, Mat);
444c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *);
445014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
446014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
447c0cdd4a1SDahai Guo 
448014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *);
449014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter);
450014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *);
451014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *);
452014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat);
453014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat);
4549371c9d4SSatish Balay typedef enum {
4559371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_RIGHT,
4569371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_LEFT
4579371c9d4SSatish Balay } MatCompositeMergeType;
4588c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType);
459014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *);
4609371c9d4SSatish Balay typedef enum {
4619371c9d4SSatish Balay   MAT_COMPOSITE_ADDITIVE,
4629371c9d4SSatish Balay   MAT_COMPOSITE_MULTIPLICATIVE
4639371c9d4SSatish Balay } MatCompositeType;
464014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType);
4656dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *);
4663b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure);
4673b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *);
4686d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *);
4698b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *);
47003049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *);
4716d7c1e57SBarry Smith 
47219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *);
473014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *);
474dedccee8SHong Zhang 
475014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *);
4768060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *);
477d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *);
47806511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *);
479fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *);
48065f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *);
48154e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *);
48254e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS);
483014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *);
4843423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *);
485345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatCreateDiagonal(Vec, Mat *);
486345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetDiagonal(Mat, Vec *);
487345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreDiagonal(Mat, Vec *);
488345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetInverseDiagonal(Mat, Vec *);
489345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreInverseDiagonal(Mat, Vec *);
4901472f72bSBarry Smith 
491978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE)
492d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
493978814f1SStefano Zampini #endif
494978814f1SStefano Zampini 
495014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]);
496ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]);
4971d6018f0SLisandro Dalcin 
498846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat);
499014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat);
500014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *);
501e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *);
50221c89e3eSBarry Smith 
503014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat);
504014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat);
505014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat);
506014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *);
507014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *);
508713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **);
5090da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *);
510479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat);
5118a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *);
512*20c04d79SPierre Jolivet PETSC_EXTERN PetscErrorCode MatComputeVariableBlockEnvelope(Mat);
51399cafbc1SBarry Smith 
514014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
5158a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode);
516014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
517014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]);
518014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]);
519014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]);
52073a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom);
52184cb2905SBarry Smith 
5222ef4de8bSBarry Smith /*S
5232ef1f0ffSBarry Smith      MatStencil - Data structure (C struct) for storing information about rows and
5242ef1f0ffSBarry Smith         columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()`
52562ef0227SBarry Smith 
5262ef1f0ffSBarry Smith    Level: beginner
5272ef1f0ffSBarry Smith 
5282ef1f0ffSBarry Smith    Notes:
52962ef0227SBarry Smith    The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored).
53087497f52SBarry Smith    The c represents the the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored.
53162ef0227SBarry Smith 
53287497f52SBarry Smith    For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`.
533be479b30SJed Brown 
5342ef1f0ffSBarry Smith    For staggered grids, see `DMStagStencil`
5352ef4de8bSBarry Smith 
5362ef1f0ffSBarry Smith    Fortran Note:
5372ef1f0ffSBarry Smith    See `MatSetValuesStencil()` for details.
5382ef4de8bSBarry Smith 
5391cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`,
5402ef1f0ffSBarry Smith           `DMStagStencil`
5412ef4de8bSBarry Smith S*/
542435da068SBarry Smith typedef struct {
543c1ac3661SBarry Smith   PetscInt k, j, i, c;
544435da068SBarry Smith } MatStencil;
5452ef4de8bSBarry Smith 
546014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
547014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
548014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt);
549435da068SBarry Smith 
550d91e6319SBarry Smith /*E
5512ef1f0ffSBarry Smith     MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use
552d91e6319SBarry Smith 
5532ef1f0ffSBarry Smith     Values:
5542ef1f0ffSBarry Smith +   `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix
5552ef1f0ffSBarry Smith -   `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted
5562ef1f0ffSBarry Smith 
55716a05f60SBarry Smith     Level: beginner
55816a05f60SBarry Smith 
5591cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()`
560d91e6319SBarry Smith E*/
5619371c9d4SSatish Balay typedef enum {
5629371c9d4SSatish Balay   MAT_FLUSH_ASSEMBLY = 1,
5639371c9d4SSatish Balay   MAT_FINAL_ASSEMBLY = 0
5649371c9d4SSatish Balay } MatAssemblyType;
565014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType);
566014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType);
567014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *);
5684f9c727eSBarry Smith 
569d91e6319SBarry Smith /*E
5702ef1f0ffSBarry Smith     MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage
571d91e6319SBarry Smith 
572d91e6319SBarry Smith     Level: beginner
573d91e6319SBarry Smith 
5742ef1f0ffSBarry Smith    Note:
5752ef1f0ffSBarry Smith    See `MatSetOption()` for the use of the options
5762ef1f0ffSBarry Smith 
5772ef1f0ffSBarry Smith    Developer Note:
57895452b02SPatrick Sanan    Entries that are negative need not be called collectively by all processes.
579382164b0SBarry Smith 
5801cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetOption()`
581d91e6319SBarry Smith E*/
5829371c9d4SSatish Balay typedef enum {
5839371c9d4SSatish Balay   MAT_OPTION_MIN                  = -3,
584c5e4d11fSDmitry Karpeev   MAT_UNUSED_NONZERO_LOCATION_ERR = -2,
58592d4d306SBarry Smith   MAT_ROW_ORIENTED                = -1,
586382164b0SBarry Smith   MAT_SYMMETRIC                   = 1,
587382164b0SBarry Smith   MAT_STRUCTURALLY_SYMMETRIC      = 2,
5888c78258cSHong Zhang   MAT_FORCE_DIAGONAL_ENTRIES      = 3,
589382164b0SBarry Smith   MAT_IGNORE_OFF_PROC_ENTRIES     = 4,
590382164b0SBarry Smith   MAT_USE_HASH_TABLE              = 5,
591382164b0SBarry Smith   MAT_KEEP_NONZERO_PATTERN        = 6,
592382164b0SBarry Smith   MAT_IGNORE_ZERO_ENTRIES         = 7,
593382164b0SBarry Smith   MAT_USE_INODES                  = 8,
594382164b0SBarry Smith   MAT_HERMITIAN                   = 9,
595382164b0SBarry Smith   MAT_SYMMETRY_ETERNAL            = 10,
596c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_LOCATION_ERR    = 11,
597382164b0SBarry Smith   MAT_IGNORE_LOWER_TRIANGULAR     = 12,
598382164b0SBarry Smith   MAT_ERROR_LOWER_TRIANGULAR      = 13,
599382164b0SBarry Smith   MAT_GETROW_UPPERTRIANGULAR      = 14,
600382164b0SBarry Smith   MAT_SPD                         = 15,
60192d4d306SBarry Smith   MAT_NO_OFF_PROC_ZERO_ROWS       = 16,
60292d4d306SBarry Smith   MAT_NO_OFF_PROC_ENTRIES         = 17,
60392d4d306SBarry Smith   MAT_NEW_NONZERO_LOCATIONS       = 18,
604c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_ALLOCATION_ERR  = 19,
605c5e4d11fSDmitry Karpeev   MAT_SUBSET_OFF_PROC_ENTRIES     = 20,
606c10200c1SHong Zhang   MAT_SUBMAT_SINGLEIS             = 21,
607957cac9fSHong Zhang   MAT_STRUCTURE_ONLY              = 22,
608071fcb05SBarry Smith   MAT_SORTED_FULL                 = 23,
6091a2c6b5cSJunchao Zhang   MAT_FORM_EXPLICIT_TRANSPOSE     = 24,
610b94d7dedSBarry Smith   MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25,
611b94d7dedSBarry Smith   MAT_SPD_ETERNAL                 = 26,
6129371c9d4SSatish Balay   MAT_OPTION_MAX                  = 27
6139371c9d4SSatish Balay } MatOption;
614e057df02SPaul Mullowney 
6150f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions;
616014dd563SJed Brown PETSC_EXTERN PetscErrorCode     MatSetOption(Mat, MatOption, PetscBool);
6177d68702bSBarry Smith PETSC_EXTERN PetscErrorCode     MatGetOption(Mat, MatOption, PetscBool *);
618856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode     MatPropagateSymmetryOptions(Mat, Mat);
61919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode     MatGetType(Mat, MatType *);
62084cb2905SBarry Smith 
621014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
622014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
623014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
624014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRowUpperTriangular(Mat);
625014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRowUpperTriangular(Mat);
626014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetColumnVector(Mat, Vec, PetscInt);
6278c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArray(Mat, PetscScalar *[]);
6288f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]);
629d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]);
6308c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArray(Mat, PetscScalar *[]);
6318f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]);
632d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]);
63321e72a00SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *);
634bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
6354099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetType(Mat, MatType);
636ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode    MatSeqAIJKron(Mat, Mat, MatReuse, Mat *);
637388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode    MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *));
6384099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList;
639cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJGetArray(Mat, PetscScalar *[]);
640cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJRestoreArray(Mat, PetscScalar *[]);
6418397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJGetArray(Mat, PetscScalar *[]);
6428397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]);
6438c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArray(Mat, PetscScalar *[]);
6448c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArray(Mat, PetscScalar *[]);
645d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDensePlaceArray(Mat, const PetscScalar[]);
646d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseReplaceArray(Mat, const PetscScalar[]);
647d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseResetArray(Mat);
6488572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArrayRead(Mat, const PetscScalar *[]);
6498572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayRead(Mat, const PetscScalar *[]);
6506947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWrite(Mat, PetscScalar *[]);
6516947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWrite(Mat, PetscScalar *[]);
652cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *);
653cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]);
654cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *);
655cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]);
656cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *);
657cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]);
658014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSize(Mat, PetscInt *);
659014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSize(Mat, PetscInt);
660014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSizes(Mat, PetscInt *, PetscInt *);
661014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizes(Mat, PetscInt, PetscInt);
66233d57670SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizesFromMats(Mat, Mat, Mat);
6630da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode    MatSetVariableBlockSizes(Mat, PetscInt, PetscInt *);
6640da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode    MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt **);
6650da83c2eSBarry Smith 
66686aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]);
66786aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]);
6686947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *);
6696947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *);
6706947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *);
6716947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *);
6726947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *);
6736947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *);
674a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
6755ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *);
6761620fd73SBarry Smith 
677014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec);
678014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec);
679014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec);
680014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec);
681014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec);
682014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *);
683014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *);
684014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec);
685014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec);
686014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat);
687bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat);
688eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat);
689f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec);
690f5edf698SHong Zhang 
691d91e6319SBarry Smith /*E
692d91e6319SBarry Smith     MatDuplicateOption - Indicates if a duplicated sparse matrix should have
693d91e6319SBarry Smith   its numerical values copied over or just its nonzero structure.
694d91e6319SBarry Smith 
6952ef1f0ffSBarry Smith     Values:
6962ef1f0ffSBarry Smith +   `MAT_DO_NOT_COPY_VALUES`    - Create a matrix using the same nonzero pattern as the original matrix,
6972ef1f0ffSBarry Smith                                with zeros for the numerical values
6982ef1f0ffSBarry Smith .   `MAT_COPY_VALUES`           - Create a matrix with the same nonzero pattern as the original matrix
6992ef1f0ffSBarry Smith                                and with the same numerical values.
7002ef1f0ffSBarry Smith -   `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix
7012ef1f0ffSBarry Smith                                and does not copy it, using zeros for the numerical values. The parent and
7022ef1f0ffSBarry Smith                                child matrices will share their index (i and j) arrays, and you cannot
7032ef1f0ffSBarry Smith                                insert new nonzero entries into either matrix
7040018da39SRichard Tran Mills 
70516a05f60SBarry Smith     Level: beginner
70616a05f60SBarry Smith 
70787497f52SBarry Smith   Note:
70887497f52SBarry Smith   Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in
70987497f52SBarry Smith   this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified.
71070dcbbb9SBarry Smith 
7111cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicate()`
712d91e6319SBarry Smith E*/
7139371c9d4SSatish Balay typedef enum {
7149371c9d4SSatish Balay   MAT_DO_NOT_COPY_VALUES,
7159371c9d4SSatish Balay   MAT_COPY_VALUES,
7169371c9d4SSatish Balay   MAT_SHARE_NONZERO_PATTERN
7179371c9d4SSatish Balay } MatDuplicateOption;
7182e8a6d31SBarry Smith 
71919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *);
720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *);
72194a9d846SBarry Smith 
722014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure);
723014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer);
724014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *);
725014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *);
726014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *);
727014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *);
728014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *);
729b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *);
730b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *);
731014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *);
732014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer);
7337b80b807SBarry Smith 
7341a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7351a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7361a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7371a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
738d4fbbf0eSBarry Smith 
739d91e6319SBarry Smith /*S
74087497f52SBarry Smith      MatInfo - Context of matrix information, used with `MatGetInfo()`
741d91e6319SBarry Smith 
742d91e6319SBarry Smith    Level: intermediate
743d91e6319SBarry Smith 
7442ef1f0ffSBarry Smith    Fortran Note:
7452ef1f0ffSBarry Smith    Information is stored as a double-precision array of dimension `MAT_INFO_SIZE`
7462ef1f0ffSBarry Smith 
7471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetInfo()`, `MatInfoType`
748d91e6319SBarry Smith S*/
7494e220ebcSLois Curfman McInnes typedef struct {
750b0a32e0cSBarry Smith   PetscLogDouble block_size;                          /* block size */
751b0a32e0cSBarry Smith   PetscLogDouble nz_allocated, nz_used, nz_unneeded;  /* number of nonzeros */
752b0a32e0cSBarry Smith   PetscLogDouble memory;                              /* memory allocated */
753b0a32e0cSBarry Smith   PetscLogDouble assemblies;                          /* number of matrix assemblies called */
754b0a32e0cSBarry Smith   PetscLogDouble mallocs;                             /* number of mallocs during MatSetValues() */
755b0a32e0cSBarry Smith   PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */
756b0a32e0cSBarry Smith   PetscLogDouble factor_mallocs;                      /* number of mallocs during factorization */
7574e220ebcSLois Curfman McInnes } MatInfo;
7584e220ebcSLois Curfman McInnes 
759d9274352SBarry Smith /*E
760d9274352SBarry Smith     MatInfoType - Indicates if you want information about the local part of the matrix,
761d9274352SBarry Smith      the entire parallel matrix or the maximum over all the local parts.
762d9274352SBarry Smith 
7632ef1f0ffSBarry Smith     Values:
7642ef1f0ffSBarry Smith +   `MAT_LOCAL` - values for each MPI process part of the matrix
7652ef1f0ffSBarry Smith .   `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes
7662ef1f0ffSBarry Smith -   `MAT_GLOBAL_SUM` - sum of each value over all MPI processes
767d9274352SBarry Smith 
76816a05f60SBarry Smith     Level: beginner
76916a05f60SBarry Smith 
7701cc06b55SBarry Smith .seealso: [](ch_matrices), `MatGetInfo()`, `MatInfo`
771d9274352SBarry Smith E*/
7729371c9d4SSatish Balay typedef enum {
7739371c9d4SSatish Balay   MAT_LOCAL      = 1,
7749371c9d4SSatish Balay   MAT_GLOBAL_MAX = 2,
7759371c9d4SSatish Balay   MAT_GLOBAL_SUM = 3
7769371c9d4SSatish Balay } MatInfoType;
777014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *);
778014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec);
779014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]);
780014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]);
781014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]);
782014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]);
783014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec);
784014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *);
7857fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *);
7867fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat);
787014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *);
788014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *);
789014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec);
790014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode);
791a52676ecSHong Zhang 
792014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *);
793014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *);
794014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *);
795014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
796014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
797e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
798e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
799a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
800a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
801cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
8024222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
803447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
80486919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *);
8057b80b807SBarry Smith 
806014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *);
807014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *);
808857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *);
809857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *);
810857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *);
811857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *);
812857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *);
813857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *);
814857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *);
815014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat);
8161b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat);
817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec);
819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec);
8237b80b807SBarry Smith 
824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *);
825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *);
826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *);
827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **);
828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *);
829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **);
830566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *);
8315ef9f2a5SBarry Smith 
8327dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
833edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrices()", ) static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
834d71ae5a4SJacob Faibussowitsch {
8359371c9d4SSatish Balay   return MatCreateSubMatrices(mat, n, irow, icol, scall, submat);
8369371c9d4SSatish Balay }
8377dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
838edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatricesMPI()", ) static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
839d71ae5a4SJacob Faibussowitsch {
8409371c9d4SSatish Balay   return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat);
8419371c9d4SSatish Balay }
842014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]);
843df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]);
8447dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *);
845edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrix()", ) static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat)
846d71ae5a4SJacob Faibussowitsch {
8479371c9d4SSatish Balay   return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat);
8489371c9d4SSatish Balay }
849014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *);
850014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *);
851014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *);
852014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *);
8537b80b807SBarry Smith 
854014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *);
855014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *);
856014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat);
857014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *);
8588a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *);
859014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
860ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *);
861f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *);
862014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *);
863014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]);
8648efafbd8SBarry Smith 
865014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt);
866aa1e27eaSFande Kong PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov);
867d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool);
8687b80b807SBarry Smith 
869014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
87022440eb1SKris Buschelman 
8717bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
8722df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
8737bab7c10SHong Zhang 
874014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *);
875014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *);
87622440eb1SKris Buschelman 
877014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
878014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *);
879bc011b1eSHong Zhang 
880014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure);
881014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure);
8821c741599SHong Zhang 
883014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar);
884014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar);
8857b80b807SBarry Smith 
886014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping);
887014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
888a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *);
88981fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout);
890014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
891014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
892014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
893014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
894e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
895014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
896014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
897052efed2SBarry Smith 
898014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt);
899014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *);
90090f02eecSBarry Smith 
901014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec);
902014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec);
903014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec);
90430b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *);
90530b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *);
90630b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *);
9072a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *);
908edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 6, 0, "MatCreateVecs()", ) static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y)
909d71ae5a4SJacob Faibussowitsch {
9109371c9d4SSatish Balay   return MatCreateVecs(mat, x, y);
9119371c9d4SSatish Balay }
91253cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *);
913014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *);
914014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *);
9153a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *);
9169c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *);
917bd481603SBarry Smith 
918bd481603SBarry Smith /*MC
9191620fd73SBarry Smith    MatSetValue - Set a single entry into a matrix.
9201620fd73SBarry Smith 
921e1c5b2e2SJose E. Roman    This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()`
922e1c5b2e2SJose E. Roman    MUST be called after all calls to `MatSetValue()` have been completed.
9231620fd73SBarry Smith 
924a9834a7dSSatish Balay    Synopsis:
925a9834a7dSSatish Balay      #include <petscmat.h>
926e1c5b2e2SJose E. Roman      PetscErrorCode MatSetValue(Mat m,PetscInt i,PetscInt j,PetscScalar va,InsertMode mode)
927e1c5b2e2SJose E. Roman 
928e1c5b2e2SJose E. Roman    Not Collective
929a9834a7dSSatish Balay 
9301620fd73SBarry Smith    Input Parameters:
9311620fd73SBarry Smith +  m - the matrix
93216a05f60SBarry Smith .  i - the row location of the entry
93316a05f60SBarry Smith .  j - the column location of the entry
93416a05f60SBarry Smith .  va - the value to insert
93587497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
9361620fd73SBarry Smith 
9371620fd73SBarry Smith    Level: beginner
9381620fd73SBarry Smith 
9392ef1f0ffSBarry Smith    Note:
9402ef1f0ffSBarry Smith    For efficiency one should use `MatSetValues()` and set several values simultaneously.
9412ef1f0ffSBarry Smith 
9421cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `InsertMode`, `MatGetValue()`, `MatSetValues()`,
9432ef1f0ffSBarry Smith           `MatSetValueLocal()`, `MatSetValuesLocal()`
9441620fd73SBarry Smith M*/
94516a05f60SBarry Smith static inline PetscErrorCode MatSetValue(Mat m, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
946d71ae5a4SJacob Faibussowitsch {
94716a05f60SBarry Smith   return MatSetValues(m, 1, &i, 1, &j, &va, mode);
9489371c9d4SSatish Balay }
9491620fd73SBarry Smith 
950e5e5a7b5SPatrick Sanan /*@C
951e5e5a7b5SPatrick Sanan    MatGetValue - Gets a single value from a matrix
9521620fd73SBarry Smith 
953e5e5a7b5SPatrick Sanan    Not Collective; can only return a value owned by the given process
954e5e5a7b5SPatrick Sanan 
955e5e5a7b5SPatrick Sanan    Input Parameters:
956e5e5a7b5SPatrick Sanan +  mat - the matrix
957e5e5a7b5SPatrick Sanan .  row - the row location of the entry
958e5e5a7b5SPatrick Sanan -  col - the column location of the entry
959e5e5a7b5SPatrick Sanan 
960e5e5a7b5SPatrick Sanan    Output Parameter:
961e5e5a7b5SPatrick Sanan .  va - the value
962e5e5a7b5SPatrick Sanan 
9632ef1f0ffSBarry Smith    Level: advanced
9642ef1f0ffSBarry Smith 
965e5e5a7b5SPatrick Sanan    Notes:
9662ef1f0ffSBarry Smith    The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd` before this call
9672ef1f0ffSBarry Smith 
96887497f52SBarry Smith    For efficiency one should use `MatGetValues()` and get several values simultaneously.
969e5e5a7b5SPatrick Sanan 
97087497f52SBarry Smith    See notes for `MatGetValues()`.
971e5e5a7b5SPatrick Sanan 
9721cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()`
973e5e5a7b5SPatrick Sanan @*/
974d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va)
975d71ae5a4SJacob Faibussowitsch {
9769371c9d4SSatish Balay   return MatGetValues(mat, 1, &row, 1, &col, va);
9779371c9d4SSatish Balay }
978e5e5a7b5SPatrick Sanan 
979e5e5a7b5SPatrick Sanan /*MC
9802ef1f0ffSBarry Smith    MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes.
981e5e5a7b5SPatrick Sanan 
982e5e5a7b5SPatrick Sanan    Not Collective
983e5e5a7b5SPatrick Sanan 
984e5e5a7b5SPatrick Sanan    Input Parameters:
985e5e5a7b5SPatrick Sanan +  m - the matrix
98616a05f60SBarry Smith .  i - the row location of the entry
98716a05f60SBarry Smith .  j - the column location of the entry
98816a05f60SBarry Smith .  va - the value to insert
98987497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
990e5e5a7b5SPatrick Sanan 
9912ef1f0ffSBarry Smith    Level: intermediate
9922ef1f0ffSBarry Smith 
993e5e5a7b5SPatrick Sanan    Notes:
99487497f52SBarry Smith    For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously.
995e5e5a7b5SPatrick Sanan 
99687497f52SBarry Smith    See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used.
997e5e5a7b5SPatrick Sanan 
9981cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSetValue()`, `MatSetValuesLocal()`
999e5e5a7b5SPatrick Sanan M*/
100016a05f60SBarry Smith static inline PetscErrorCode MatSetValueLocal(Mat m, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
1001d71ae5a4SJacob Faibussowitsch {
100216a05f60SBarry Smith   return MatSetValuesLocal(m, 1, &i, 1, &j, &va, mode);
10039371c9d4SSatish Balay }
10041620fd73SBarry Smith 
10051620fd73SBarry Smith /*MC
1006d0609cedSBarry Smith    MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per
1007bd481603SBarry Smith        row in a matrix providing the data that one can use to correctly preallocate the matrix.
1008bd481603SBarry Smith 
1009bd481603SBarry Smith    Synopsis:
1010aaa7dc30SBarry Smith    #include <petscmat.h>
1011d0609cedSBarry Smith    PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz)
1012bd481603SBarry Smith 
1013d083f849SBarry Smith    Collective
1014bd481603SBarry Smith 
1015bd481603SBarry Smith    Input Parameters:
1016bd481603SBarry Smith +  comm - the communicator that will share the eventually allocated matrix
1017859fcb39SBarry Smith .  nrows - the number of LOCAL rows in the matrix
1018859fcb39SBarry Smith -  ncols - the number of LOCAL columns in the matrix
1019bd481603SBarry Smith 
1020bd481603SBarry Smith    Output Parameters:
1021bd481603SBarry Smith +  dnz - the array that will be passed to the matrix preallocation routines
1022a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1023bd481603SBarry Smith 
10242ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1025bd481603SBarry Smith 
1026bd481603SBarry Smith    Notes:
10272ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
10282ef1f0ffSBarry Smith    the use of this routine
10292ef1f0ffSBarry Smith 
1030d0609cedSBarry Smith    This is a macro that handles its own error checking, it does not return an error code.
1031d0609cedSBarry Smith 
10322ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1033bd481603SBarry Smith 
10342ef1f0ffSBarry Smith    Developer Note:
10352ef1f0ffSBarry Smith     This is a MACRO not a function because it has a leading { that is closed by `PetscPreallocateFinalize()`.
1036bd481603SBarry Smith 
10371cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1038db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1039bd481603SBarry Smith M*/
10409371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \
10419371c9d4SSatish Balay   do { \
10423ba16761SJacob Faibussowitsch     PetscInt              __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \
10433ba16761SJacob Faibussowitsch     PetscInt PETSC_UNUSED __start; \
10449566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \
10459566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \
10469371c9d4SSatish Balay     __start = __end - __ncols; \
10479371c9d4SSatish Balay     (void)__start; \
10489566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \
10495f80ce2aSJacob Faibussowitsch   __rstart -= __nrows
10507c922b88SBarry Smith 
1051edd03b47SJacob Faibussowitsch #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateBegin()", ) MatPreallocateBegin(__VA_ARGS__)
1052d0609cedSBarry Smith 
1053bd481603SBarry Smith /*MC
1054bd481603SBarry Smith    MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1055bd481603SBarry Smith        inserted using a local number of the rows and columns
1056bd481603SBarry Smith 
1057bd481603SBarry Smith    Synopsis:
1058aaa7dc30SBarry Smith    #include <petscmat.h>
1059c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1060bd481603SBarry Smith 
1061bd481603SBarry Smith    Not Collective
1062bd481603SBarry Smith 
1063bd481603SBarry Smith    Input Parameters:
1064784ac674SJed Brown +  map - the row mapping from local numbering to global numbering
1065bd481603SBarry Smith .  nrows - the number of rows indicated
10661d73ed98SBarry Smith .  rows - the indices of the rows
1067784ac674SJed Brown .  cmap - the column mapping from local to global numbering
1068bd481603SBarry Smith .  ncols - the number of columns in the matrix
1069bd481603SBarry Smith .  cols - the columns indicated
1070bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1071a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1072bd481603SBarry Smith 
10732ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1074bd481603SBarry Smith 
1075bd481603SBarry Smith    Notes:
10762ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
10772ef1f0ffSBarry Smith    the use of this routine
1078bd481603SBarry Smith 
10792ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1080bd481603SBarry Smith 
10811cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1082db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()`
1083bd481603SBarry Smith M*/
108494bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
10859371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1086c4f061fbSSatish Balay 
1087bd481603SBarry Smith /*MC
1088c1154cd5SBarry Smith    MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1089c1154cd5SBarry Smith        inserted using a local number of the rows and columns. This version removes any duplicate columns in cols
1090c1154cd5SBarry Smith 
1091c1154cd5SBarry Smith    Synopsis:
1092c1154cd5SBarry Smith    #include <petscmat.h>
1093c1154cd5SBarry Smith    PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1094c1154cd5SBarry Smith 
1095c1154cd5SBarry Smith    Not Collective
1096c1154cd5SBarry Smith 
1097c1154cd5SBarry Smith    Input Parameters:
1098c1154cd5SBarry Smith +  map - the row mapping from local numbering to global numbering
1099c1154cd5SBarry Smith .  nrows - the number of rows indicated
1100c1154cd5SBarry Smith .  rows - the indices of the rows (these values are mapped to the global values)
1101c1154cd5SBarry Smith .  cmap - the column mapping from local to global numbering
1102c1154cd5SBarry Smith .  ncols - the number of columns in the matrix   (this value will be changed if duplicate columns are found)
1103c1154cd5SBarry Smith .  cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed)
1104c1154cd5SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1105a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1106c1154cd5SBarry Smith 
11072ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1108c1154cd5SBarry Smith 
1109c1154cd5SBarry Smith    Notes:
11102ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11112ef1f0ffSBarry Smith    the use of this routine
1112c1154cd5SBarry Smith 
11132ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1114c1154cd5SBarry Smith 
11151cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1116db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1117c1154cd5SBarry Smith M*/
111894bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11199371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1120c1154cd5SBarry Smith 
1121c1154cd5SBarry Smith /*MC
1122d6e23781SBarry Smith    MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1123bd481603SBarry Smith        inserted using a local number of the rows and columns
1124bd481603SBarry Smith 
1125bd481603SBarry Smith    Synopsis:
1126aaa7dc30SBarry Smith    #include <petscmat.h>
1127d6e23781SBarry Smith    PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1128d6e23781SBarry Smith 
1129d6e23781SBarry Smith    Not Collective
1130d6e23781SBarry Smith 
1131d6e23781SBarry Smith    Input Parameters:
1132d6e23781SBarry Smith +  map - the row mapping from local numbering to global numbering
1133d6e23781SBarry Smith .  nrows - the number of rows indicated
1134d6e23781SBarry Smith .  rows - the indices of the rows
1135d6e23781SBarry Smith .  cmap - the column mapping from local to global numbering
1136d6e23781SBarry Smith .  ncols - the number of columns in the matrix
1137d6e23781SBarry Smith .  cols - the columns indicated
1138d6e23781SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1139a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1140d6e23781SBarry Smith 
11412ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1142d6e23781SBarry Smith 
1143d6e23781SBarry Smith    Notes:
11442ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11452ef1f0ffSBarry Smith    the use of this routine
1146d6e23781SBarry Smith 
11472ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1148d6e23781SBarry Smith 
11491cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1150db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`
1151d6e23781SBarry Smith M*/
115294bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11539371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1154d6e23781SBarry Smith 
1155d6e23781SBarry Smith /*MC
1156d6e23781SBarry Smith    MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1157d6e23781SBarry Smith        inserted using a local number of the rows and columns
1158d6e23781SBarry Smith 
1159d6e23781SBarry Smith    Synopsis:
1160d6e23781SBarry Smith    #include <petscmat.h>
1161d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1162bd481603SBarry Smith 
1163bd481603SBarry Smith    Not Collective
1164bd481603SBarry Smith 
1165bd481603SBarry Smith    Input Parameters:
1166bd481603SBarry Smith +  map - the mapping between local numbering and global numbering
1167bd481603SBarry Smith .  nrows - the number of rows indicated
11681d73ed98SBarry Smith .  rows - the indices of the rows
1169bd481603SBarry Smith .  ncols - the number of columns in the matrix
1170bd481603SBarry Smith .  cols - the columns indicated
1171bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1172a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1173bd481603SBarry Smith 
11742ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1175bd481603SBarry Smith 
1176bd481603SBarry Smith    Notes:
11772ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11782ef1f0ffSBarry Smith    the use of this routine
1179bd481603SBarry Smith 
11802ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1181bd481603SBarry Smith 
11821cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`
1183db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1184bd481603SBarry Smith M*/
118594bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \
11869371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));)
1187e83a5d19SLisandro Dalcin 
1188bd481603SBarry Smith /*MC
1189bd481603SBarry Smith    MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1190bd481603SBarry Smith        inserted using a local number of the rows and columns
1191bd481603SBarry Smith 
1192bd481603SBarry Smith    Synopsis:
1193aaa7dc30SBarry Smith    #include <petscmat.h>
1194c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1195bd481603SBarry Smith 
1196bd481603SBarry Smith    Not Collective
1197bd481603SBarry Smith 
1198bd481603SBarry Smith    Input Parameters:
119964075487SBarry Smith +  row - the row
1200bd481603SBarry Smith .  ncols - the number of columns in the matrix
1201a50f8bf6SHong Zhang -  cols - the columns indicated
1202a50f8bf6SHong Zhang 
1203a50f8bf6SHong Zhang    Output Parameters:
1204a50f8bf6SHong Zhang +  dnz - the array that will be passed to the matrix preallocation routines
1205a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1206bd481603SBarry Smith 
12072ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1208bd481603SBarry Smith 
1209bd481603SBarry Smith    Notes:
12102ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12112ef1f0ffSBarry Smith    the use of this routine
1212bd481603SBarry Smith 
12132ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1214bd481603SBarry Smith 
1215d0609cedSBarry Smith    This is a MACRO not a function because it uses variables declared in MatPreallocateBegin().
12161620fd73SBarry Smith 
12171cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1218db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1219bd481603SBarry Smith M*/
12209371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \
12219371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \
122264075487SBarry Smith     if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \
1223a6042fd4SStefano Zampini     else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12249371c9d4SSatish Balay   })
12257c922b88SBarry Smith 
1226bd481603SBarry Smith /*MC
1227d6e23781SBarry Smith    MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1228bd481603SBarry Smith        inserted using a local number of the rows and columns
1229bd481603SBarry Smith 
1230bd481603SBarry Smith    Synopsis:
1231aaa7dc30SBarry Smith    #include <petscmat.h>
1232d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1233bd481603SBarry Smith 
1234bd481603SBarry Smith    Not Collective
1235bd481603SBarry Smith 
1236bd481603SBarry Smith    Input Parameters:
1237bd481603SBarry Smith +  nrows - the number of rows indicated
12381d73ed98SBarry Smith .  rows - the indices of the rows
1239bd481603SBarry Smith .  ncols - the number of columns in the matrix
1240bd481603SBarry Smith .  cols - the columns indicated
1241bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1242a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1243bd481603SBarry Smith 
12442ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1245bd481603SBarry Smith 
1246bd481603SBarry Smith    Notes:
12472ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12482ef1f0ffSBarry Smith    the use of this routine
1249bd481603SBarry Smith 
12502ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1251bd481603SBarry Smith 
1252d0609cedSBarry Smith    This is a MACRO not a function because it uses variables declared in MatPreallocateBegin().
12531620fd73SBarry Smith 
12541cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`,
1255db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1256bd481603SBarry Smith M*/
125794bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \
12589371c9d4SSatish Balay   PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \
1259d3d32019SBarry Smith     if (cols[__i] >= __end) onz[row - __rstart]++; \
1260a6042fd4SStefano Zampini     else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12619371c9d4SSatish Balay   })
1262d3d32019SBarry Smith 
1263bd481603SBarry Smith /*MC
1264a6042fd4SStefano Zampini    MatPreallocateLocation -  An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists
126516371a99SBarry Smith 
126616371a99SBarry Smith    Synopsis:
1267aaa7dc30SBarry Smith    #include <petscmat.h>
126816371a99SBarry Smith    PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz)
126916371a99SBarry Smith 
127016371a99SBarry Smith    Not Collective
127116371a99SBarry Smith 
127216371a99SBarry Smith    Input Parameters:
1273a2b725a8SWilliam Gropp +  A - matrix
127416371a99SBarry Smith .  row - row where values exist (must be local to this process)
127516371a99SBarry Smith .  ncols - number of columns
127616371a99SBarry Smith .  cols - columns with nonzeros
127716371a99SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1278a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
127916371a99SBarry Smith 
12802ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
128116371a99SBarry Smith 
128216371a99SBarry Smith    Notes:
12832ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12842ef1f0ffSBarry Smith    the use of this routine
128516371a99SBarry Smith 
12862ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
128716371a99SBarry Smith 
128816371a99SBarry Smith   This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines.
128916371a99SBarry Smith 
12901cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1291db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
129216371a99SBarry Smith M*/
1293d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz))
129416371a99SBarry Smith 
129516371a99SBarry Smith /*MC
1296d0609cedSBarry Smith    MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per
1297bd481603SBarry Smith        row in a matrix providing the data that one can use to correctly preallocate the matrix.
1298bd481603SBarry Smith 
1299bd481603SBarry Smith    Synopsis:
1300aaa7dc30SBarry Smith    #include <petscmat.h>
1301d0609cedSBarry Smith    PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz)
1302bd481603SBarry Smith 
1303d083f849SBarry Smith    Collective
1304bd481603SBarry Smith 
1305bd481603SBarry Smith    Input Parameters:
130616371a99SBarry Smith +  dnz - the array that was be passed to the matrix preallocation routines
1307a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1308bd481603SBarry Smith 
13092ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1310bd481603SBarry Smith 
1311bd481603SBarry Smith    Notes:
13122ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
13132ef1f0ffSBarry Smith    the use of this routine
1314d0609cedSBarry Smith 
13152ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1316bd481603SBarry Smith 
13172ef1f0ffSBarry Smith    Developer Note:
1318d0609cedSBarry Smith     This is a MACRO not a function because it closes the { started in MatPreallocateBegin().
13191620fd73SBarry Smith 
13201cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1321db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1322bd481603SBarry Smith M*/
13239371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \
13249371c9d4SSatish Balay   PetscCall(PetscFree2(dnz, onz)); \
13259371c9d4SSatish Balay   } \
13269371c9d4SSatish Balay   while (0)
1327d0609cedSBarry Smith 
1328edd03b47SJacob Faibussowitsch #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateEnd()", ) MatPreallocateEnd(__VA_ARGS__)
13297c922b88SBarry Smith 
13307b80b807SBarry Smith /* Routines unique to particular data structures */
1331014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *);
1332698d4c6aSKris Buschelman 
1333014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *);
1334014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *);
1335698d4c6aSKris Buschelman 
1336014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]);
1337014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]);
1338014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1339014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1340014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1341014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool);
13427b80b807SBarry Smith 
1343a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4
1344a96a251dSBarry Smith 
1345014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1346014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1347014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]);
134819b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt);
1349273d9f13SBarry Smith 
1350014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1351014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1352014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1353014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1354014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1355014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1356014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1357014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]);
1358b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *);
1359252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *);
1360014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]);
1361014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]);
13629230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
13639230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
1364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *);
1365273d9f13SBarry Smith 
136649a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *);
1367ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt);
1368edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatDenseSetLDA()", ) static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda)
1369d71ae5a4SJacob Faibussowitsch {
13709371c9d4SSatish Balay   return MatDenseSetLDA(A, lda);
13719371c9d4SSatish Balay }
1372014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *);
13731b807ce4Svictorle 
1374621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1375621e819fSSatish Balay 
1376014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat);
1377014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat);
13782e8a6d31SBarry Smith 
1379014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *);
13807cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *);
13817b80b807SBarry Smith /*
13827b80b807SBarry Smith   These routines are not usually accessed directly, rather solving is
138394b7f48cSBarry Smith   done through the KSP and PC interfaces.
13847b80b807SBarry Smith */
13857b80b807SBarry Smith 
138676bdecfbSBarry Smith /*J
13872ef1f0ffSBarry Smith     MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used
13882ef1f0ffSBarry Smith     to reduce fill in sparse factorizations.
1389d9274352SBarry Smith 
1390d9274352SBarry Smith    Level: beginner
1391d9274352SBarry Smith 
13922c7c0729SBarry Smith    Notes:
139316a05f60SBarry Smith    If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one
139416a05f60SBarry Smith    of its own.
13952c7c0729SBarry Smith 
13962ef1f0ffSBarry Smith    There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()`
13972ef1f0ffSBarry Smith 
13982ef1f0ffSBarry Smith    Developer Note:
13992ef1f0ffSBarry Smith    This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning`
14002ef1f0ffSBarry Smith 
14011cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`,
14022ef1f0ffSBarry Smith           `PCFactorSetOrderingType()`
140376bdecfbSBarry Smith J*/
140419fd82e9SBarry Smith typedef const char *MatOrderingType;
14052692d6eeSBarry Smith #define MATORDERINGNATURAL       "natural"
14062692d6eeSBarry Smith #define MATORDERINGND            "nd"
14072692d6eeSBarry Smith #define MATORDERING1WD           "1wd"
14082692d6eeSBarry Smith #define MATORDERINGRCM           "rcm"
14092692d6eeSBarry Smith #define MATORDERINGQMD           "qmd"
14102692d6eeSBarry Smith #define MATORDERINGROWLENGTH     "rowlength"
1411510184a7SJed Brown #define MATORDERINGWBM           "wbm"
1412fc1bef75SJed Brown #define MATORDERINGSPECTRAL      "spectral"
1413312e372aSBarry Smith #define MATORDERINGAMD           "amd"           /* only works if UMFPACK is installed with PETSc */
1414048412efSPablo Brubeck #define MATORDERINGMETISND       "metisnd"       /* only works if METIS is installed with PETSc */
14159bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */
14162c7c0729SBarry Smith #define MATORDERINGEXTERNAL      "external"      /* uses an ordering type internal to the factorization package */
1417b12f92e5SBarry Smith 
141819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrdering(Mat, MatOrderingType, IS *, IS *);
1419140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrderingList(PetscFunctionList *);
1420bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode    MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *));
1421140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList;
1422d4fbbf0eSBarry Smith 
1423013e2dc7SBarry Smith #include "petscmatcoarsen.h"
1424013e2dc7SBarry Smith 
1425014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS);
1426fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *);
1427a2ce50c7SBarry Smith 
14284ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *);
14294ac6704cSBarry Smith 
1430d91e6319SBarry Smith /*S
14312ef1f0ffSBarry Smith     MatFactorShiftType - Type of numeric shift used for factorizations
1432d90ac83dSHong Zhang 
14332ef1f0ffSBarry Smith    Values:
14342ef1f0ffSBarry Smith +  `MAT_SHIFT_NONE` - do not shift the matrix diagonal entries
14352ef1f0ffSBarry Smith .  `MAT_SHIFT_NONZERO` - shift the entries to be non-zero
14362ef1f0ffSBarry Smith .  `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite
14372ef1f0ffSBarry Smith -  `MAT_SHIFT_INBLOCKS` - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ`
1438d90ac83dSHong Zhang 
14392ef1f0ffSBarry Smith    Level: intermediate
14402ef1f0ffSBarry Smith 
14411cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()`
1442d90ac83dSHong Zhang S*/
14439371c9d4SSatish Balay typedef enum {
14449371c9d4SSatish Balay   MAT_SHIFT_NONE,
14459371c9d4SSatish Balay   MAT_SHIFT_NONZERO,
14469371c9d4SSatish Balay   MAT_SHIFT_POSITIVE_DEFINITE,
14479371c9d4SSatish Balay   MAT_SHIFT_INBLOCKS
14489371c9d4SSatish Balay } MatFactorShiftType;
14496a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[];
14505e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[];
1451d90ac83dSHong Zhang 
1452d90ac83dSHong Zhang /*S
1453ec5066bdSBarry Smith     MatFactorError - indicates what type of error was generated in a matrix factorization
14549aa7eafdSHong Zhang 
14552ef1f0ffSBarry Smith     Values:
14562ef1f0ffSBarry Smith +   `MAT_FACTOR_NOERROR` - there was no error during the factorization
14572ef1f0ffSBarry Smith .   `MAT_FACTOR_STRUCT_ZEROPIVOT` - there was a missing entry in a diagonal location of the matrix
14582ef1f0ffSBarry Smith .   `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization
14592ef1f0ffSBarry Smith .   `MAT_FACTOR_OUTMEMORY` - the factorization has run out of memory
14602ef1f0ffSBarry Smith -   `MAT_FACTOR_OTHER` - some other error has occurred.
14619aa7eafdSHong Zhang 
14622ef1f0ffSBarry Smith     Level: intermediate
146300e125f8SBarry Smith 
14642ef1f0ffSBarry Smith     Note:
14652ef1f0ffSBarry Smith     When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason`
14662ef1f0ffSBarry Smith 
14671cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`,
14682ef1f0ffSBarry Smith           `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason`
14699aa7eafdSHong Zhang S*/
14709371c9d4SSatish Balay typedef enum {
14719371c9d4SSatish Balay   MAT_FACTOR_NOERROR,
14729371c9d4SSatish Balay   MAT_FACTOR_STRUCT_ZEROPIVOT,
14739371c9d4SSatish Balay   MAT_FACTOR_NUMERIC_ZEROPIVOT,
14749371c9d4SSatish Balay   MAT_FACTOR_OUTMEMORY,
14759371c9d4SSatish Balay   MAT_FACTOR_OTHER
14769371c9d4SSatish Balay } MatFactorError;
14779aa7eafdSHong Zhang 
147800e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *);
1479b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat);
14807b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *);
148100e125f8SBarry Smith 
14829aa7eafdSHong Zhang /*S
1483422a814eSBarry Smith    MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization
1484b00f7748SHong Zhang 
1485b00f7748SHong Zhang    Level: developer
1486b00f7748SHong Zhang 
14872ef1f0ffSBarry Smith    Note:
14882ef1f0ffSBarry Smith    You can use `MatFactorInfoInitialize()` to set default values.
1489b00f7748SHong Zhang 
14902ef1f0ffSBarry Smith    Fortran Note:
14912ef1f0ffSBarry Smith    The data is available in a double precision arrays of size `MAT_FACTORINFO_SIZE`
14922ef1f0ffSBarry Smith 
14931cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`,
14942ef1f0ffSBarry Smith           `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()`
1495b00f7748SHong Zhang S*/
1496b00f7748SHong Zhang typedef struct {
149715e8a5b3SHong Zhang   PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */
149885317021SBarry Smith   PetscReal usedt;
149915e8a5b3SHong Zhang   PetscReal dt;            /* drop tolerance */
1500b00f7748SHong Zhang   PetscReal dtcol;         /* tolerance for pivoting */
150115e8a5b3SHong Zhang   PetscReal dtcount;       /* maximum nonzeros to be allowed per row */
150267e28bfeSBarry Smith   PetscReal fill;          /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */
1503348344bbSBarry Smith   PetscReal levels;        /* ICC/ILU(levels) */
1504bcd9e38bSBarry Smith   PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0
1505bcd9e38bSBarry Smith                                    factorization may be faster if do not pivot */
150615e8a5b3SHong Zhang   PetscReal zeropivot;     /* pivot is called zero if less than this */
1507f4db908eSBarry Smith   PetscReal shifttype;     /* type of shift added to matrix factor to prevent zero pivots */
1508f4db908eSBarry Smith   PetscReal shiftamount;   /* how large the shift is */
150915e8a5b3SHong Zhang } MatFactorInfo;
1510ffa6d0a5SLois Curfman McInnes 
1511014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *);
15129a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *);
15139a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15149a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *);
15159a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *);
15169a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *);
15179a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15189a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15199a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15209a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *);
15219a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *);
15223f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *);
15233f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15243f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *);
1525014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *);
1526014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec);
1527014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec);
1528014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec);
1529014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec);
1530014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec);
1531014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec);
1532014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs);
15337c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat);
15347c2f51b8SStefano Zampini 
15359371c9d4SSatish Balay typedef enum {
15369371c9d4SSatish Balay   MAT_FACTOR_SCHUR_UNFACTORED,
15379371c9d4SSatish Balay   MAT_FACTOR_SCHUR_FACTORED,
15389371c9d4SSatish Balay   MAT_FACTOR_SCHUR_INVERTED
15399371c9d4SSatish Balay } MatFactorSchurStatus;
15408e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS);
15417c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15427c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus);
15435a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat);
15447c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15455a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec);
15465a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec);
15476dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat);
1548bb5a7306SBarry Smith 
15498a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat);
1550d91e6319SBarry Smith /*E
1551d91e6319SBarry Smith     MatSORType - What type of (S)SOR to perform
1552bb1eb677SSatish Balay 
15532ef1f0ffSBarry Smith    Values:
15542ef1f0ffSBarry Smith +  `SOR_FORWARD_SWEEP` - do a sweep from the first row of the matrix to the last
15552ef1f0ffSBarry Smith .  `SOR_BACKWARD_SWEEP` -  do a sweep from the last row to the first
15562ef1f0ffSBarry Smith .  `SOR_SYMMETRIC_SWEEP` - do a sweep from the first row to the last and then back to the first
15572ef1f0ffSBarry Smith .  `SOR_LOCAL_FORWARD_SWEEP` - each MPI rank does its own forward sweep with no communication
15582ef1f0ffSBarry Smith .  `SOR_LOCAL_BACKWARD_SWEEP` - each MPI rank does its own backward sweep with no communication
15592ef1f0ffSBarry Smith .  `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI rank does its own symmetric sweep with no communication
15602ef1f0ffSBarry Smith .  `SOR_ZERO_INITIAL_GUESS` - indicates the initial solution is zero so the sweep can avoid unneeded computation
15612ef1f0ffSBarry Smith .  `SOR_EISENSTAT` - apply the Eisentat application of SOR, see `PCEISENSTAT`
15622ef1f0ffSBarry Smith .  `SOR_APPLY_UPPER` - multiply by the upper triangular portion of the matrix
15632ef1f0ffSBarry Smith -  `SOR_APPLY_LOWER` - multiply by the lower triangular portion of the matrix
15642ef1f0ffSBarry Smith 
1565d91e6319SBarry Smith     Level: beginner
1566d91e6319SBarry Smith 
15672ef1f0ffSBarry Smith    Note:
15682ef1f0ffSBarry Smith    These may be bitwise ORd together
1569d9274352SBarry Smith 
15702ef1f0ffSBarry Smith    Developer Note:
15712ef1f0ffSBarry Smith    Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below
1572d91e6319SBarry Smith 
15731cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSOR()`
1574d91e6319SBarry Smith E*/
15759371c9d4SSatish Balay typedef enum {
15769371c9d4SSatish Balay   SOR_FORWARD_SWEEP         = 1,
15779371c9d4SSatish Balay   SOR_BACKWARD_SWEEP        = 2,
15789371c9d4SSatish Balay   SOR_SYMMETRIC_SWEEP       = 3,
15799371c9d4SSatish Balay   SOR_LOCAL_FORWARD_SWEEP   = 4,
15809371c9d4SSatish Balay   SOR_LOCAL_BACKWARD_SWEEP  = 8,
15819371c9d4SSatish Balay   SOR_LOCAL_SYMMETRIC_SWEEP = 12,
15829371c9d4SSatish Balay   SOR_ZERO_INITIAL_GUESS    = 16,
15839371c9d4SSatish Balay   SOR_EISENSTAT             = 32,
15849371c9d4SSatish Balay   SOR_APPLY_UPPER           = 64,
15859371c9d4SSatish Balay   SOR_APPLY_LOWER           = 128
15869371c9d4SSatish Balay } MatSORType;
1587014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
15888ed539a5SBarry Smith 
15897086a01eSPeter Brune /*S
15907086a01eSPeter Brune      MatColoring - Object for managing the coloring of matrices.
15917086a01eSPeter Brune 
15927086a01eSPeter Brune    Level: beginner
15937086a01eSPeter Brune 
1594ec5066bdSBarry Smith    Notes:
159587497f52SBarry Smith    Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
159687497f52SBarry Smith    matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors).
1597ec5066bdSBarry Smith 
159887497f52SBarry Smith    Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This
15992ef1f0ffSBarry Smith    same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices.
1600ec5066bdSBarry Smith 
16011cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`,
16022ef1f0ffSBarry Smith           `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`,
16032ef1f0ffSBarry Smith           `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen`
16047086a01eSPeter Brune S*/
1605d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring;
1606d4db15c4SBarry Smith 
1607d4db15c4SBarry Smith /*J
1608d4db15c4SBarry Smith     MatColoringType - String with the name of a PETSc matrix coloring
1609d9274352SBarry Smith 
1610d9274352SBarry Smith    Level: beginner
1611d9274352SBarry Smith 
16121cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring`
161376bdecfbSBarry Smith J*/
161419fd82e9SBarry Smith typedef const char *MatColoringType;
16155567d71aSPeter Brune #define MATCOLORINGJP      "jp"
1616b9acb617SPeter Brune #define MATCOLORINGPOWER   "power"
16172692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural"
16182692d6eeSBarry Smith #define MATCOLORINGSL      "sl"
16192692d6eeSBarry Smith #define MATCOLORINGLF      "lf"
16202692d6eeSBarry Smith #define MATCOLORINGID      "id"
16218121bdceSPeter Brune #define MATCOLORINGGREEDY  "greedy"
1622b12f92e5SBarry Smith 
16238ac6da0aSPeter Brune /*E
16242ef1f0ffSBarry Smith    MatColoringWeightType - Type of weight scheme used for the coloring algorithm
16258ac6da0aSPeter Brune 
16262ef1f0ffSBarry Smith     Values:
162787497f52SBarry Smith +   `MAT_COLORING_RANDOM`  - Random weights
162887497f52SBarry Smith .   `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering.
162987497f52SBarry Smith -   `MAT_COLORING_LF`      - Last-first weighting.
16308ac6da0aSPeter Brune 
16318ac6da0aSPeter Brune     Level: intermediate
16328ac6da0aSPeter Brune 
16331cc06b55SBarry Smith .seealso: [](ch_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()`
16348ac6da0aSPeter Brune E*/
16359371c9d4SSatish Balay typedef enum {
16369371c9d4SSatish Balay   MAT_COLORING_WEIGHT_RANDOM,
16379371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LEXICAL,
16389371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LF,
16399371c9d4SSatish Balay   MAT_COLORING_WEIGHT_SL
16409371c9d4SSatish Balay } MatColoringWeightType;
16418ac6da0aSPeter Brune 
1642335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *);
1643d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *);
1644335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *);
1645335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer);
1646335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType);
1647335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring);
1648335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt);
1649335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *);
1650335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt);
1651335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *);
1652335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *);
1653335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring));
1654014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *);
16558ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType);
1656c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *);
16578ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm);
1658bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring);
1659edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatColoringTest()", ) static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring)
1660d71ae5a4SJacob Faibussowitsch {
16619371c9d4SSatish Balay   return MatColoringTest(matcoloring, iscoloring);
16629371c9d4SSatish Balay }
1663bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring);
1664639f9d9dSBarry Smith 
1665d9274352SBarry Smith /*S
166687497f52SBarry Smith      MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring
1667639f9d9dSBarry Smith 
1668d9274352SBarry Smith    Level: beginner
1669d9274352SBarry Smith 
1670ec5066bdSBarry Smith    Notes:
167187497f52SBarry Smith    This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()`
1672ec5066bdSBarry Smith 
16732ef1f0ffSBarry Smith    The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object
16742ef1f0ffSBarry Smith 
16751cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()`
1676d9274352SBarry Smith S*/
1677e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring;
1678639f9d9dSBarry Smith 
1679014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *);
1680014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *);
1681014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer);
1682014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *);
1683014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **);
1684014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal);
1685014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring);
1686d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *);
1687014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec);
1688edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]);
1689f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring);
1690f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt);
1691bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *);
1692b1683b59SHong Zhang 
1693b1683b59SHong Zhang /*S
1694b9af6bddSHong Zhang      MatTransposeColoring - Object for computing a sparse matrix product C=A*B^T via coloring
1695b1683b59SHong Zhang 
16962ef1f0ffSBarry Smith    Level: developer
1697b1683b59SHong Zhang 
16981cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()`
1699b1683b59SHong Zhang S*/
1700b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring;
1701b1683b59SHong Zhang 
1702014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *);
1703014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat);
1704014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat);
1705014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *);
1706b1683b59SHong Zhang 
1707d9274352SBarry Smith /*S
1708d9274352SBarry Smith      MatPartitioning - Object for managing the partitioning of a matrix or graph
1709d9274352SBarry Smith 
1710d9274352SBarry Smith    Level: beginner
1711d9274352SBarry Smith 
171287497f52SBarry Smith    Note:
171387497f52SBarry Smith      There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations
171487497f52SBarry Smith      via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`)
1715ec5066bdSBarry Smith 
1716ec5066bdSBarry Smith    Developers Note:
17172ef1f0ffSBarry Smith      It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed
1718ec5066bdSBarry Smith 
17191cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`,
17202ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
1721d9274352SBarry Smith S*/
172291e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning;
1723d9274352SBarry Smith 
172476bdecfbSBarry Smith /*J
17258f6c3df8SBarry Smith     MatPartitioningType - String with the name of a PETSc matrix partitioning
1726d9274352SBarry Smith 
1727d9274352SBarry Smith    Level: beginner
17280d04baf8SBarry Smith dm
17291cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`,
17302ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
173176bdecfbSBarry Smith J*/
173219fd82e9SBarry Smith typedef const char *MatPartitioningType;
17332692d6eeSBarry Smith #define MATPARTITIONINGCURRENT  "current"
1734aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE  "average"
17352692d6eeSBarry Smith #define MATPARTITIONINGSQUARE   "square"
17362692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis"
17372692d6eeSBarry Smith #define MATPARTITIONINGCHACO    "chaco"
17382692d6eeSBarry Smith #define MATPARTITIONINGPARTY    "party"
173950d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch"
174088d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch"
174171306c60Sjroman 
1742014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *);
174319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType);
1744014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt);
1745014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat);
1746252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt);
1747014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]);
1748014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]);
1749ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool);
1750ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *);
1751014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *);
1752fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *);
1753668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS);
1754f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *);
1755014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *);
1756bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning));
1757014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer);
1758fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]);
1759014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning);
176019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *);
1761ca161407SBarry Smith 
176227538973SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part);
1763014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning);
1764014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *);
17650752156aSBarry Smith 
17669371c9d4SSatish Balay typedef enum {
17679371c9d4SSatish Balay   MP_CHACO_MULTILEVEL = 1,
17689371c9d4SSatish Balay   MP_CHACO_SPECTRAL   = 2,
17699371c9d4SSatish Balay   MP_CHACO_LINEAR     = 4,
17709371c9d4SSatish Balay   MP_CHACO_RANDOM     = 5,
17719371c9d4SSatish Balay   MP_CHACO_SCATTERED  = 6
17729371c9d4SSatish Balay } MPChacoGlobalType;
17736a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[];
17749371c9d4SSatish Balay typedef enum {
17759371c9d4SSatish Balay   MP_CHACO_KERNIGHAN = 1,
17769371c9d4SSatish Balay   MP_CHACO_NONE      = 2
17779371c9d4SSatish Balay } MPChacoLocalType;
17786a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[];
17799371c9d4SSatish Balay typedef enum {
17809371c9d4SSatish Balay   MP_CHACO_LANCZOS = 0,
17819371c9d4SSatish Balay   MP_CHACO_RQI     = 1
17829371c9d4SSatish Balay } MPChacoEigenType;
17836a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[];
1784b6956c12SJose Roman 
1785014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType);
1786014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *);
1787014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType);
1788014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *);
1789014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal);
1790014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType);
1791014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *);
1792014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal);
1793014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *);
1794014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt);
1795014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *);
179671306c60Sjroman 
179771306c60Sjroman #define MP_PARTY_OPT "opt"
179871306c60Sjroman #define MP_PARTY_LIN "lin"
179971306c60Sjroman #define MP_PARTY_SCA "sca"
180071306c60Sjroman #define MP_PARTY_RAN "ran"
180171306c60Sjroman #define MP_PARTY_GBF "gbf"
180271306c60Sjroman #define MP_PARTY_GCF "gcf"
180371306c60Sjroman #define MP_PARTY_BUB "bub"
180471306c60Sjroman #define MP_PARTY_DEF "def"
1805014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *);
180671306c60Sjroman #define MP_PARTY_HELPFUL_SETS  "hs"
180771306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl"
180871306c60Sjroman #define MP_PARTY_NONE          "no"
1809014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *);
1810014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal);
1811014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool);
1812014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool);
181371306c60Sjroman 
18149371c9d4SSatish Balay typedef enum {
18159371c9d4SSatish Balay   MP_PTSCOTCH_DEFAULT,
18169371c9d4SSatish Balay   MP_PTSCOTCH_QUALITY,
18179371c9d4SSatish Balay   MP_PTSCOTCH_SPEED,
18189371c9d4SSatish Balay   MP_PTSCOTCH_BALANCE,
18199371c9d4SSatish Balay   MP_PTSCOTCH_SAFETY,
18209371c9d4SSatish Balay   MP_PTSCOTCH_SCALABILITY
18219371c9d4SSatish Balay } MPPTScotchStrategyType;
18226a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[];
1823e0f1cffaSJose Roman 
1824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal);
1825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *);
1826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType);
1827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *);
182871306c60Sjroman 
1829b43b03e9SMark F. Adams /*
18306294fa2bSFande Kong  * hierarchical partitioning
18316294fa2bSFande Kong  */
18324e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *);
18334e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *);
18344e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt);
18354e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt);
18366294fa2bSFande Kong 
1837014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *);
1838591294e4SBarry Smith 
18390752156aSBarry Smith /*
1840c786d857SStefano Zampini     If you add entries here you must also add them to src/mat/f90-mod/petscmat.h
1841c786d857SStefano Zampini     If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx
1842d4fbbf0eSBarry Smith */
18439371c9d4SSatish Balay typedef enum {
18449371c9d4SSatish Balay   MATOP_SET_VALUES               = 0,
18451c1c02c0SLois Curfman McInnes   MATOP_GET_ROW                  = 1,
18461c1c02c0SLois Curfman McInnes   MATOP_RESTORE_ROW              = 2,
18471c1c02c0SLois Curfman McInnes   MATOP_MULT                     = 3,
18481c1c02c0SLois Curfman McInnes   MATOP_MULT_ADD                 = 4,
18497c922b88SBarry Smith   MATOP_MULT_TRANSPOSE           = 5,
18507c922b88SBarry Smith   MATOP_MULT_TRANSPOSE_ADD       = 6,
18511c1c02c0SLois Curfman McInnes   MATOP_SOLVE                    = 7,
18521c1c02c0SLois Curfman McInnes   MATOP_SOLVE_ADD                = 8,
18537c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE          = 9,
18547c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE_ADD      = 10,
18551c1c02c0SLois Curfman McInnes   MATOP_LUFACTOR                 = 11,
18561c1c02c0SLois Curfman McInnes   MATOP_CHOLESKYFACTOR           = 12,
1857a714c06dSBarry Smith   MATOP_SOR                      = 13,
18581c1c02c0SLois Curfman McInnes   MATOP_TRANSPOSE                = 14,
18591c1c02c0SLois Curfman McInnes   MATOP_GETINFO                  = 15,
18601c1c02c0SLois Curfman McInnes   MATOP_EQUAL                    = 16,
18611c1c02c0SLois Curfman McInnes   MATOP_GET_DIAGONAL             = 17,
18621c1c02c0SLois Curfman McInnes   MATOP_DIAGONAL_SCALE           = 18,
18631c1c02c0SLois Curfman McInnes   MATOP_NORM                     = 19,
18641c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_BEGIN           = 20,
18651c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_END             = 21,
1866d519adbfSMatthew Knepley   MATOP_SET_OPTION               = 22,
1867d519adbfSMatthew Knepley   MATOP_ZERO_ENTRIES             = 23,
1868d519adbfSMatthew Knepley   MATOP_ZERO_ROWS                = 24,
1869d519adbfSMatthew Knepley   MATOP_LUFACTOR_SYMBOLIC        = 25,
1870d519adbfSMatthew Knepley   MATOP_LUFACTOR_NUMERIC         = 26,
1871d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27,
1872d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_NUMERIC  = 28,
1873e5f2d425SStefano Zampini   MATOP_SETUP                    = 29,
1874d519adbfSMatthew Knepley   MATOP_ILUFACTOR_SYMBOLIC       = 30,
1875d519adbfSMatthew Knepley   MATOP_ICCFACTOR_SYMBOLIC       = 31,
1876a5b7ff6bSBarry Smith   MATOP_GET_DIAGONAL_BLOCK       = 32,
1877e5f2d425SStefano Zampini   MATOP_SET_INF                  = 33,
1878d519adbfSMatthew Knepley   MATOP_DUPLICATE                = 34,
1879d519adbfSMatthew Knepley   MATOP_FORWARD_SOLVE            = 35,
1880d519adbfSMatthew Knepley   MATOP_BACKWARD_SOLVE           = 36,
1881d519adbfSMatthew Knepley   MATOP_ILUFACTOR                = 37,
1882d519adbfSMatthew Knepley   MATOP_ICCFACTOR                = 38,
1883d519adbfSMatthew Knepley   MATOP_AXPY                     = 39,
18847dae84e0SHong Zhang   MATOP_CREATE_SUBMATRICES       = 40,
1885d519adbfSMatthew Knepley   MATOP_INCREASE_OVERLAP         = 41,
1886d519adbfSMatthew Knepley   MATOP_GET_VALUES               = 42,
1887d519adbfSMatthew Knepley   MATOP_COPY                     = 43,
1888d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX              = 44,
1889d519adbfSMatthew Knepley   MATOP_SCALE                    = 45,
1890d519adbfSMatthew Knepley   MATOP_SHIFT                    = 46,
189135153367SBarry Smith   MATOP_DIAGONAL_SET             = 47,
18929d39f69dSJed Brown   MATOP_ZERO_ROWS_COLUMNS        = 48,
18939d39f69dSJed Brown   MATOP_SET_RANDOM               = 49,
1894d519adbfSMatthew Knepley   MATOP_GET_ROW_IJ               = 50,
1895d519adbfSMatthew Knepley   MATOP_RESTORE_ROW_IJ           = 51,
1896d519adbfSMatthew Knepley   MATOP_GET_COLUMN_IJ            = 52,
1897d519adbfSMatthew Knepley   MATOP_RESTORE_COLUMN_IJ        = 53,
1898d519adbfSMatthew Knepley   MATOP_FDCOLORING_CREATE        = 54,
1899d519adbfSMatthew Knepley   MATOP_COLORING_PATCH           = 55,
1900d519adbfSMatthew Knepley   MATOP_SET_UNFACTORED           = 56,
1901d519adbfSMatthew Knepley   MATOP_PERMUTE                  = 57,
1902d519adbfSMatthew Knepley   MATOP_SET_VALUES_BLOCKED       = 58,
19037dae84e0SHong Zhang   MATOP_CREATE_SUBMATRIX         = 59,
1904d519adbfSMatthew Knepley   MATOP_DESTROY                  = 60,
1905d519adbfSMatthew Knepley   MATOP_VIEW                     = 61,
1906d519adbfSMatthew Knepley   MATOP_CONVERT_FROM             = 62,
1907e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_63=63 */
19087bab7c10SHong Zhang   MATOP_MATMAT_MULT_SYMBOLIC    = 64,
19097bab7c10SHong Zhang   MATOP_MATMAT_MULT_NUMERIC     = 65,
1910d519adbfSMatthew Knepley   MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66,
1911d519adbfSMatthew Knepley   MATOP_SET_VALUES_LOCAL        = 67,
1912d519adbfSMatthew Knepley   MATOP_ZERO_ROWS_LOCAL         = 68,
1913d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX_ABS         = 69,
1914d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN_ABS         = 70,
1915d519adbfSMatthew Knepley   MATOP_CONVERT                 = 71,
1916e5f2d425SStefano Zampini   MATOP_HAS_OPERATION           = 72,
19179d39f69dSJed Brown   /* MATOP_PLACEHOLDER_73=73, */
1918d519adbfSMatthew Knepley   MATOP_SET_VALUES_ADIFOR = 74,
1919d519adbfSMatthew Knepley   MATOP_FD_COLORING_APPLY = 75,
1920d519adbfSMatthew Knepley   MATOP_SET_FROM_OPTIONS  = 76,
1921e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_77=77, */
1922e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_78=78, */
19239d39f69dSJed Brown   MATOP_FIND_ZERO_DIAGONALS       = 79,
1924d519adbfSMatthew Knepley   MATOP_MULT_MULTIPLE             = 80,
1925d519adbfSMatthew Knepley   MATOP_SOLVE_MULTIPLE            = 81,
1926d519adbfSMatthew Knepley   MATOP_GET_INERTIA               = 82,
1927d519adbfSMatthew Knepley   MATOP_LOAD                      = 83,
1928d519adbfSMatthew Knepley   MATOP_IS_SYMMETRIC              = 84,
1929d519adbfSMatthew Knepley   MATOP_IS_HERMITIAN              = 85,
1930d519adbfSMatthew Knepley   MATOP_IS_STRUCTURALLY_SYMMETRIC = 86,
1931820469bcSHong Zhang   MATOP_SET_VALUES_BLOCKEDLOCAL   = 87,
1932b41ce5d5SBarry Smith   MATOP_CREATE_VECS               = 88,
1933e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_89=89, */
1934d519adbfSMatthew Knepley   MATOP_MAT_MULT_SYMBOLIC = 90,
1935d519adbfSMatthew Knepley   MATOP_MAT_MULT_NUMERIC  = 91,
1936e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_92=92, */
1937d519adbfSMatthew Knepley   MATOP_PTAP_SYMBOLIC = 93,
1938d519adbfSMatthew Knepley   MATOP_PTAP_NUMERIC  = 94,
1939e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_95=95, */
1940bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96,
1941bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_NUMER = 97,
1942e5f2d425SStefano Zampini   MATOP_BIND_TO_CPU              = 98,
19437a3c3d58SStefano Zampini   MATOP_PRODUCTSETFROMOPTIONS    = 99,
19447a3c3d58SStefano Zampini   MATOP_PRODUCTSYMBOLIC          = 100,
19457a3c3d58SStefano Zampini   MATOP_PRODUCTNUMERIC           = 101,
1946d519adbfSMatthew Knepley   MATOP_CONJUGATE                = 102,
1947e5f2d425SStefano Zampini   MATOP_VIEW_NATIVE              = 103,
1948d519adbfSMatthew Knepley   MATOP_SET_VALUES_ROW           = 104,
1949d519adbfSMatthew Knepley   MATOP_REAL_PART                = 105,
1950bda6c4cbSBarry Smith   MATOP_IMAGINARY_PART           = 106,
1951bda6c4cbSBarry Smith   MATOP_GET_ROW_UPPER_TRIANGULAR = 107,
1952bda6c4cbSBarry Smith   MATOP_RESTORE_ROW_UPPER_TRIANG = 108,
1953bda6c4cbSBarry Smith   MATOP_MAT_SOLVE                = 109,
195429eadf9eSStefano Zampini   MATOP_MAT_SOLVE_TRANSPOSE      = 110,
1955d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN              = 111,
19560e8d04f7SBarry Smith   MATOP_GET_COLUMN_VECTOR        = 112,
1957d519adbfSMatthew Knepley   MATOP_MISSING_DIAGONAL         = 113,
19580e8d04f7SBarry Smith   MATOP_GET_SEQ_NONZERO_STRUCTUR = 114,
195989c6957cSBarry Smith   MATOP_CREATE                   = 115,
196089c6957cSBarry Smith   MATOP_GET_GHOSTS               = 116,
19610e8d04f7SBarry Smith   MATOP_GET_LOCAL_SUB_MATRIX     = 117,
19620e8d04f7SBarry Smith   MATOP_RESTORE_LOCALSUB_MATRIX  = 118,
1963eeffb40dSHong Zhang   MATOP_MULT_DIAGONAL_BLOCK      = 119,
19640e8d04f7SBarry Smith   MATOP_HERMITIAN_TRANSPOSE      = 120,
19650e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANSPOSE = 121,
19660e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANS_ADD = 122,
19670e8d04f7SBarry Smith   MATOP_GET_MULTI_PROC_BLOCK     = 123,
19689d39f69dSJed Brown   MATOP_FIND_NONZERO_ROWS        = 124,
19690e8d04f7SBarry Smith   MATOP_GET_COLUMN_NORMS         = 125,
19709d39f69dSJed Brown   MATOP_INVERT_BLOCK_DIAGONAL    = 126,
1971e5f2d425SStefano Zampini   MATOP_INVERT_VBLOCK_DIAGONAL   = 127,
1972b41ce5d5SBarry Smith   MATOP_CREATE_SUB_MATRICES_MPI  = 128,
19732b8ad9a3SHong Zhang   MATOP_SET_VALUES_BATCH         = 129,
1974e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_130=130, */
19750e8d04f7SBarry Smith   MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131,
1976e9b602ebSSatish Balay   MATOP_TRANSPOSE_MAT_MULT_NUMER = 132,
19770e8d04f7SBarry Smith   MATOP_TRANSPOSE_COLORING_CREAT = 133,
19780e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_SPT = 134,
19790e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_DEN = 135,
1980e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_136=136, */
19810e8d04f7SBarry Smith   MATOP_RART_SYMBOLIC         = 137,
19820e8d04f7SBarry Smith   MATOP_RART_NUMERIC          = 138,
1983e09a3074SHong Zhang   MATOP_SET_BLOCK_SIZES       = 139,
1984f9426fe0SMark Adams   MATOP_AYPX                  = 140,
19851919a2e2SJed Brown   MATOP_RESIDUAL              = 141,
19869c8f2541SHong Zhang   MATOP_FDCOLORING_SETUP      = 142,
1987e5f2d425SStefano Zampini   MATOP_FIND_OFFBLOCK_ENTRIES = 143,
19882d033e1fSHong Zhang   MATOP_MPICONCATENATESEQ     = 144,
1989bb01b7b0SPatrick Sanan   MATOP_DESTROYSUBMATRICES    = 145,
1990e265f6d6SPatrick Sanan   MATOP_TRANSPOSE_SOLVE       = 146,
1991e265f6d6SPatrick Sanan   MATOP_GET_VALUES_LOCAL      = 147
1992fae171e0SBarry Smith } MatOperation;
19930c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void));
1994976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void));
1995976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *);
199694342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *);
1997edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatProductClear()", ) static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A)
1998d71ae5a4SJacob Faibussowitsch {
19999371c9d4SSatish Balay   return MatProductClear(A);
20009371c9d4SSatish Balay }
2001014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void));
2002014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void));
2003014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *);
2004800f99ffSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *));
2005db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType);
2006f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
2007f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
20080c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat);
2009b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType);
2010b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *);
2011112a2221SBarry Smith 
201290ace30eSBarry Smith /*
201390ace30eSBarry Smith    Codes for matrices stored on disk. By default they are
201490ace30eSBarry Smith    stored in a universal format. By changing the format with
20156a9046bcSBarry Smith    PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will
201690ace30eSBarry Smith    be stored in a way natural for the matrix, for example dense matrices
201790ace30eSBarry Smith    would be stored as dense. Matrices stored this way may only be
2018f4403165SShri Abhyankar    read into matrices of the same type.
201990ace30eSBarry Smith */
202090ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1
202190ace30eSBarry Smith 
2022014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal);
202375d48cdbSStefano Zampini 
20248546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType);
202575d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
202675d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool);
2027f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool);
2028014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *);
20293b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *);
2030014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat);
2031e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
2032edd03b47SJacob Faibussowitsch PETSC_EXTERN PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatConvert()", ) PetscErrorCode MatISGetMPIXAIJ(Mat, MatReuse, Mat *);
20331f4e1ec7SBarry Smith 
2034d9274352SBarry Smith /*S
2035d9274352SBarry Smith      MatNullSpace - Object that removes a null space from a vector, i.e.
2036cb6b9846SMatthew Knepley          orthogonalizes the vector to a subspace
2037d9274352SBarry Smith 
2038f7a9e4ceSBarry Smith    Level: advanced
2039d9274352SBarry Smith 
20401cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()`
2041d9274352SBarry Smith S*/
204274637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace;
2043d9274352SBarry Smith 
2044014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *);
2045014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *);
2046014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *);
2047d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec);
2048014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *);
20495fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *);
20505fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace);
2051014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace);
2052014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace);
2053014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *);
2054014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *);
2055014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer);
2056014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **);
2057014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *);
205874637425SBarry Smith 
2059014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS);
2060014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal);
2061014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *);
20623f1d51d7SBarry Smith 
2063014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *);
2064014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *);
2065014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *);
2066c4f061fbSSatish Balay 
20670bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *);
20680bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *);
20690bacdadaSStefano Zampini 
2070edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperator()", ) static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B)
2071d71ae5a4SJacob Faibussowitsch {
2072f22e26b7SPierre Jolivet   return MatComputeOperator(A, PETSC_NULLPTR, B);
20739371c9d4SSatish Balay }
2074edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperatorTranspose()", ) static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B)
2075d71ae5a4SJacob Faibussowitsch {
2076f22e26b7SPierre Jolivet   return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B);
20779371c9d4SSatish Balay }
2078b0a32e0cSBarry Smith 
207949bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *);
208049bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *);
2081a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **);
2082a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2083a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **);
2084a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **);
2085a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **);
2086a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2087a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **);
2088a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **);
2089dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat);
2090dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]);
2091dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]);
2092910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *);
209349bd79ccSDebojyoti Ghosh 
2094014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec);
209504f1ad80SBarry Smith 
2096014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2097014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec);
2098014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *);
2099014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *));
2100014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec));
2101014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt);
2102014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat);
2103014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal);
2104014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt);
2105014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *);
2106014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]);
2107014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *);
2108014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *);
2109e884886fSBarry Smith 
21106370053bSBarry Smith /*S
21116370053bSBarry Smith     MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free
21126370053bSBarry Smith               Jacobian vector products
2113e884886fSBarry Smith 
21142ef1f0ffSBarry Smith     Level: developer
21152ef1f0ffSBarry Smith 
211695452b02SPatrick Sanan     Notes:
211787497f52SBarry Smith     `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure
21186370053bSBarry Smith 
21192ef1f0ffSBarry Smith      MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure
21206370053bSBarry Smith 
21212ef1f0ffSBarry Smith     This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator`
21226370053bSBarry Smith 
21231cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`,
21242ef1f0ffSBarry Smith           `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator`
21256370053bSBarry Smith S*/
2126e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD;
2127e884886fSBarry Smith 
212876bdecfbSBarry Smith /*J
21292ef1f0ffSBarry Smith     MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function
2130e884886fSBarry Smith 
213116a05f60SBarry Smith    Values:
213216a05f60SBarry Smith +   `MATMFFD_DS` - an algorithm described by Dennis and Schnabel
213316a05f60SBarry Smith -   `MATMFFD_WP` - the Walker-Pernice strategy.
213416a05f60SBarry Smith 
2135e884886fSBarry Smith    Level: beginner
2136e884886fSBarry Smith 
21371cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()`
213876bdecfbSBarry Smith J*/
213919fd82e9SBarry Smith typedef const char *MatMFFDType;
2140e884886fSBarry Smith #define MATMFFD_DS "ds"
2141e884886fSBarry Smith #define MATMFFD_WP "wp"
2142e884886fSBarry Smith 
214319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType);
2144bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD));
2145e884886fSBarry Smith 
2146014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal);
2147014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool);
2148e884886fSBarry Smith 
214961ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType);
215061ab5df0SBarry Smith 
2151014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *);
2152014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *);
21537dbadf16SMatthew Knepley 
215453022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS
215553022affSStefano Zampini PETSC_EXTERN_TYPEDEF typedef PetscScalar (*MatH2OpusKernel)(PetscInt, PetscReal[], PetscReal[], void *);
215653022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernel, void *, PetscReal, PetscInt, PetscInt, Mat *);
215753022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *);
215853022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal);
215953022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat);
216053022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal);
216153022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool);
216253022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *);
216353022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *);
216453022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *);
2165300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar);
2166a0d2e7d8SStefano Zampini #endif
2167a0d2e7d8SStefano Zampini 
2168c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL
216998e73e17SPierre Jolivet PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatHtoolKernel)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *);
2170c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernel, void *, Mat *);
2171c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernel, void *);
217298e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *);
217398e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *);
217498e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool);
21752ef1f0ffSBarry Smith 
2176c7a4214aSPierre Jolivet /*E
217787497f52SBarry Smith      MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL`
2178c7a4214aSPierre Jolivet 
2179c7a4214aSPierre Jolivet     Values:
218087497f52SBarry Smith +   `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation
218187497f52SBarry Smith .   `MAT_HTOOL_COMPRESSOR_FULL_ACA` - full adaptive cross approximation
218287497f52SBarry Smith -   `MAT_HTOOL_COMPRESSOR_SVD` - singular value decomposition
2183c7a4214aSPierre Jolivet 
218416a05f60SBarry Smith    Level: intermediate
218516a05f60SBarry Smith 
21861cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType`
2187c7a4214aSPierre Jolivet E*/
21889371c9d4SSatish Balay typedef enum {
21899371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA,
21909371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_FULL_ACA,
21919371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SVD
21929371c9d4SSatish Balay } MatHtoolCompressorType;
21932ef1f0ffSBarry Smith 
219498e73e17SPierre Jolivet /*E
219587497f52SBarry Smith      MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL`
219698e73e17SPierre Jolivet 
219798e73e17SPierre Jolivet     Values:
219887497f52SBarry Smith +   `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default) - axis computed via principle component analysis, split uniformly
219987497f52SBarry Smith .   `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC` - axis computed via principle component analysis, split barycentrically
220087497f52SBarry Smith .   `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR` - axis along the largest extent of the bounding box, split uniformly
220187497f52SBarry Smith -   `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically
220298e73e17SPierre Jolivet 
220316a05f60SBarry Smith    Level: intermediate
220416a05f60SBarry Smith 
22052ef1f0ffSBarry Smith     Note:
22062ef1f0ffSBarry Smith     Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types
220798e73e17SPierre Jolivet 
22081cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType`
220998e73e17SPierre Jolivet E*/
22109371c9d4SSatish Balay typedef enum {
22119371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_REGULAR,
22129371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC,
22139371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR,
22149371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC
22159371c9d4SSatish Balay } MatHtoolClusteringType;
2216c7a4214aSPierre Jolivet #endif
2217c7a4214aSPierre Jolivet 
221897969023SHong Zhang #ifdef PETSC_HAVE_MUMPS
2219014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt);
2220bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *);
2221b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal);
2222bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *);
2223bc6112feSHong Zhang 
2224ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *);
2225ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *);
2226ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *);
2227ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *);
22285c0bae8cSAshish Patel PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **);
222989a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat);
22300e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat);
223197969023SHong Zhang #endif
223223a5497aSJed Brown 
2233b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO
2234d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt);
2235b500a6b7SJose David Bermeol #endif
2236b500a6b7SJose David Bermeol 
2237d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO
2238d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt);
2239d305a81bSVasiliy Kozyrev #endif
2240d305a81bSVasiliy Kozyrev 
2241d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU
2242014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal);
2243d954db57SHong Zhang #endif
2244d954db57SHong Zhang 
2245fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST
2246fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *);
2247fb785984SHong Zhang #endif
2248fb785984SHong Zhang 
2249575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK
2250542aee0fSPieter Ghysels /*E
22512ef1f0ffSBarry Smith     MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK``
2252542aee0fSPieter Ghysels 
22532ef1f0ffSBarry Smith     Values:
22542ef1f0ffSBarry Smith +  `MAT_STRUMPACK_NATURAL` - use the current ordering
22552ef1f0ffSBarry Smith .  `MAT_STRUMPACK_METIS` - use MeTis to compute an ordering
22562ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PARMETIS` - use ParMeTis to compute an ordering
22572ef1f0ffSBarry Smith .  `MAT_STRUMPACK_SCOTCH` - use Scotch to compute an ordering
22582ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PTSCOTCH` - use parallel Scotch to compute an ordering
22592ef1f0ffSBarry Smith -  `MAT_STRUMPACK_RCM` - use an RCM ordering
22602ef1f0ffSBarry Smith 
226116a05f60SBarry Smith     Level: intermediate
226216a05f60SBarry Smith 
22632ef1f0ffSBarry Smith     Developer Note:
22642ef1f0ffSBarry Smith     Should be called `MatSTRUMPACKReorderingType`
22652ef1f0ffSBarry Smith 
22662ef1f0ffSBarry Smith .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetHSSRelTol()`, `MatSTRUMPACKSetReordering()`
2267542aee0fSPieter Ghysels E*/
22689371c9d4SSatish Balay typedef enum {
22699371c9d4SSatish Balay   MAT_STRUMPACK_NATURAL  = 0,
227034f43fa5SPieter Ghysels   MAT_STRUMPACK_METIS    = 1,
227134f43fa5SPieter Ghysels   MAT_STRUMPACK_PARMETIS = 2,
227234f43fa5SPieter Ghysels   MAT_STRUMPACK_SCOTCH   = 3,
227334f43fa5SPieter Ghysels   MAT_STRUMPACK_PTSCOTCH = 4,
22749371c9d4SSatish Balay   MAT_STRUMPACK_RCM      = 5
22759371c9d4SSatish Balay } MatSTRUMPACKReordering;
22762ef1f0ffSBarry Smith 
227734f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering);
2278575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool);
227934f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSRelTol(Mat, PetscReal);
2280edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSTRUMPACKSetHSSRelTol()", ) static inline PetscErrorCode MatSTRUMPACKSetHSSRelCompTol(Mat mat, PetscReal rtol)
2281d71ae5a4SJacob Faibussowitsch {
22829371c9d4SSatish Balay   return MatSTRUMPACKSetHSSRelTol(mat, rtol);
22839371c9d4SSatish Balay }
228434f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSAbsTol(Mat, PetscReal);
228534f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMinSepSize(Mat, PetscInt);
2286edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSTRUMPACKSetHSSMinSepSize()", ) static inline PetscErrorCode MatSTRUMPACKSetHSSMinSize(Mat mat, PetscInt hssminsize)
2287d71ae5a4SJacob Faibussowitsch {
22889371c9d4SSatish Balay   return MatSTRUMPACKSetHSSMinSepSize(mat, hssminsize);
22899371c9d4SSatish Balay }
229034f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMaxRank(Mat, PetscInt);
2291a36bf211SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSLeafSize(Mat, PetscInt);
2292575704cbSPieter Ghysels #endif
2293575704cbSPieter Ghysels 
2294b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool);
22952216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *);
2296edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 13, 0, "MatBindToCPU()", ) static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg)
2297d71ae5a4SJacob Faibussowitsch {
22989371c9d4SSatish Balay   return MatBindToCPU(A, flg);
22999371c9d4SSatish Balay }
230065a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool);
2301e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *);
2302e7e92044SBarry Smith 
2303aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA
23043f9c0db1SPaul Mullowney /*E
23052ef1f0ffSBarry Smith     MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU)
23062692e278SPaul Mullowney     matrices.
2307e057df02SPaul Mullowney 
23082ef1f0ffSBarry Smith     Values:
230987497f52SBarry Smith +   `MAT_CUSPARSE_CSR` - Compressed Sparse Row
231087497f52SBarry Smith .   `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later).
231187497f52SBarry Smith -   `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later).
2312e057df02SPaul Mullowney 
2313e057df02SPaul Mullowney     Level: intermediate
2314e057df02SPaul Mullowney 
23151cc06b55SBarry Smith .seealso: [](ch_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation`
2316e057df02SPaul Mullowney E*/
2317e057df02SPaul Mullowney 
23189371c9d4SSatish Balay typedef enum {
23199371c9d4SSatish Balay   MAT_CUSPARSE_CSR,
23209371c9d4SSatish Balay   MAT_CUSPARSE_ELL,
23219371c9d4SSatish Balay   MAT_CUSPARSE_HYB
23229371c9d4SSatish Balay } MatCUSPARSEStorageFormat;
2323e057df02SPaul Mullowney 
2324e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */
2325e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[];
2326e057df02SPaul Mullowney 
23273f9c0db1SPaul Mullowney /*E
23282ef1f0ffSBarry Smith     MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU)
23292692e278SPaul Mullowney     matrices whose operation should use a particular storage format.
2330e057df02SPaul Mullowney 
23312ef1f0ffSBarry Smith     Values:
233287497f52SBarry Smith +   `MAT_CUSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel MatMult
233387497f52SBarry Smith .   `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel MatMult
233487497f52SBarry Smith .   `MAT_CUSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) MatMult
23352ef1f0ffSBarry Smith -   `MAT_CUSPARSE_ALL` - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices
2336e057df02SPaul Mullowney 
2337e057df02SPaul Mullowney     Level: intermediate
2338e057df02SPaul Mullowney 
23391cc06b55SBarry Smith .seealso: [](ch_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat`
2340e057df02SPaul Mullowney E*/
23419371c9d4SSatish Balay typedef enum {
23429371c9d4SSatish Balay   MAT_CUSPARSE_MULT_DIAG,
23439371c9d4SSatish Balay   MAT_CUSPARSE_MULT_OFFDIAG,
23449371c9d4SSatish Balay   MAT_CUSPARSE_MULT,
23459371c9d4SSatish Balay   MAT_CUSPARSE_ALL
23469371c9d4SSatish Balay } MatCUSPARSEFormatOperation;
2347e057df02SPaul Mullowney 
234810e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
234910e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2350e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat);
2351365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool);
23525f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
23535f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
23545f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **);
23555f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **);
23565f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **);
23575f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **);
23585f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **);
23595f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **);
2360637a0070SStefano Zampini 
2361637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
2362637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
2363637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **);
2364637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **);
2365637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **);
2366637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **);
2367637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **);
2368637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **);
2369637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *);
2370d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *);
2371637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat);
23723d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *);
23732d1451d4SHong Zhang 
23742d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
23752d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
23769ae82921SPaul Mullowney #endif
23779ae82921SPaul Mullowney 
237847d993e7Ssuyashtn #ifdef PETSC_HAVE_HIP
237947d993e7Ssuyashtn /*E
23802ef1f0ffSBarry Smith     MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU)
238147d993e7Ssuyashtn     matrices.
238247d993e7Ssuyashtn 
23832ef1f0ffSBarry Smith     Values:
23842ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_CSR` - Compressed Sparse Row
23852ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_ELL` - Ellpack
23862ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format
238747d993e7Ssuyashtn 
238816a05f60SBarry Smith     Level: intermediate
238916a05f60SBarry Smith 
23901cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation`
239147d993e7Ssuyashtn E*/
239247d993e7Ssuyashtn 
239347d993e7Ssuyashtn typedef enum {
239447d993e7Ssuyashtn   MAT_HIPSPARSE_CSR,
239547d993e7Ssuyashtn   MAT_HIPSPARSE_ELL,
239647d993e7Ssuyashtn   MAT_HIPSPARSE_HYB
239747d993e7Ssuyashtn } MatHIPSPARSEStorageFormat;
239847d993e7Ssuyashtn 
239947d993e7Ssuyashtn /* these will be strings associated with enumerated type defined above */
240047d993e7Ssuyashtn PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[];
240147d993e7Ssuyashtn 
240247d993e7Ssuyashtn /*E
24032ef1f0ffSBarry Smith     MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU)
240447d993e7Ssuyashtn     matrices whose operation should use a particular storage format.
240547d993e7Ssuyashtn 
24062ef1f0ffSBarry Smith     Values:
24072ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()`
2408eb495b2aSPierre Jolivet .   `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel `MatMult()`
24092ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()`
24102ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_ALL` - sets the storage format for all HIPSPARSE (GPU) matrices
24112ef1f0ffSBarry Smith 
241216a05f60SBarry Smith     Level: intermediate
241316a05f60SBarry Smith 
24141cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat`
241547d993e7Ssuyashtn E*/
241647d993e7Ssuyashtn typedef enum {
241747d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_DIAG,
241847d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_OFFDIAG,
241947d993e7Ssuyashtn   MAT_HIPSPARSE_MULT,
242047d993e7Ssuyashtn   MAT_HIPSPARSE_ALL
242147d993e7Ssuyashtn } MatHIPSPARSEFormatOperation;
242247d993e7Ssuyashtn 
242347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
242447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
242547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat);
242647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool);
242747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
242847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
242947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **);
243047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **);
243147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **);
243247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **);
243347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **);
243447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **);
243547d993e7Ssuyashtn 
243647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
243747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
243847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **);
243947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **);
244047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **);
244147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **);
244247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **);
244347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **);
244447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *);
244547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *);
244647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat);
24473d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *);
244847d993e7Ssuyashtn #endif
244947d993e7Ssuyashtn 
2450d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL)
2451d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2452d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2453d67ff14aSKarl Rupp #endif
2454d67ff14aSKarl Rupp 
245554efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW)
2456014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec);
2457014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec);
24582a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *);
245954efbe56SHong Zhang #endif
246054efbe56SHong Zhang 
2461d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
2462d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2463d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt);
2464d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *);
2465d24d4204SJose E. Roman #endif
2466d24d4204SJose E. Roman 
2467014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *);
2468014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *);
2469014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]);
2470014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]);
2471014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***);
2472014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *);
247319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType);
2474014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]);
2475014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat);
2476d8588912SDave May 
24774325cce7SMatthew G Knepley PETSC_EXTERN PetscErrorCode MatChop(Mat, PetscReal);
2478e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *);
24794325cce7SMatthew G Knepley 
2480b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **);
248153dd7562SDmitry Karpeev 
2482c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat);
2483c094ef40SMatthew G. Knepley 
2484539c167fSBarry Smith PETSC_INTERN PetscErrorCode MatHeaderMerge(Mat, Mat *);
2485539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *);
24861a2c6b5cSJunchao Zhang 
24877ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *);
248872833a62Smarkadams4 
24892d776b49SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, Mat *);
2490dec0b466SHong Zhang PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat);
2491ad6ad4e1SHansol  Suh 
2492d16ceb75SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *);
249323a5497aSJed Brown #endif
2494