xref: /petsc/include/petscmat.h (revision 2b938fe496202fa1a08b5a98b06ece7455dbcdc4)
12eac72dbSBarry Smith /*
22eac72dbSBarry Smith      Include file for the matrix component of PETSc
32eac72dbSBarry Smith */
4a4963045SJacob Faibussowitsch #pragma once
5ac09b921SBarry Smith 
62c8e378dSBarry Smith #include <petscvec.h>
72eac72dbSBarry Smith 
8ac09b921SBarry Smith /* SUBMANSEC = Mat */
9ac09b921SBarry Smith 
10d9274352SBarry Smith /*S
118f6c3df8SBarry Smith    Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without
12af27ebaaSBarry Smith          an explicit sparse representation (such as matrix-free operators). Also used to hold representations of graphs
13af27ebaaSBarry Smith          for graph operations such as coloring, `MatColoringCreate()`
142eac72dbSBarry Smith 
15d91e6319SBarry Smith    Level: beginner
16d91e6319SBarry Smith 
172ef1f0ffSBarry Smith    Note:
181cc06b55SBarry Smith    See [](doc_matrix), [](ch_matrices) and `MatType` for available matrix types
192ef1f0ffSBarry Smith 
201cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()`
21d9274352SBarry Smith S*/
22d9274352SBarry Smith typedef struct _p_Mat *Mat;
23d9274352SBarry Smith 
2476bdecfbSBarry Smith /*J
258f6c3df8SBarry Smith    MatType - String with the name of a PETSc matrix type
26d9274352SBarry Smith 
27d9274352SBarry Smith    Level: beginner
28d9274352SBarry Smith 
292ef1f0ffSBarry Smith    Note:
302ef1f0ffSBarry Smith    [](doc_matrix) for a table of available matrix types
312ef1f0ffSBarry Smith 
321cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()`
3376bdecfbSBarry Smith J*/
3419fd82e9SBarry Smith typedef const char *MatType;
35273d9f13SBarry Smith #define MATSAME                      "same"
365a11e1b2SBarry Smith #define MATMAIJ                      "maij"
37273d9f13SBarry Smith #define MATSEQMAIJ                   "seqmaij"
38273d9f13SBarry Smith #define MATMPIMAIJ                   "mpimaij"
3949bd79ccSDebojyoti Ghosh #define MATKAIJ                      "kaij"
4049bd79ccSDebojyoti Ghosh #define MATSEQKAIJ                   "seqkaij"
4149bd79ccSDebojyoti Ghosh #define MATMPIKAIJ                   "mpikaij"
42273d9f13SBarry Smith #define MATIS                        "is"
435a11e1b2SBarry Smith #define MATAIJ                       "aij"
44273d9f13SBarry Smith #define MATSEQAIJ                    "seqaij"
45273d9f13SBarry Smith #define MATMPIAIJ                    "mpiaij"
465a11e1b2SBarry Smith #define MATAIJCRL                    "aijcrl"
475a11e1b2SBarry Smith #define MATSEQAIJCRL                 "seqaijcrl"
485a11e1b2SBarry Smith #define MATMPIAIJCRL                 "mpiaijcrl"
499ae82921SPaul Mullowney #define MATAIJCUSPARSE               "aijcusparse"
509ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE            "seqaijcusparse"
519ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE            "mpiaijcusparse"
5247d993e7Ssuyashtn #define MATAIJHIPSPARSE              "aijhipsparse"
5347d993e7Ssuyashtn #define MATSEQAIJHIPSPARSE           "seqaijhipsparse"
5447d993e7Ssuyashtn #define MATMPIAIJHIPSPARSE           "mpiaijhipsparse"
558c3ff71bSJunchao Zhang #define MATAIJKOKKOS                 "aijkokkos"
568c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS              "seqaijkokkos"
578c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS              "mpiaijkokkos"
58d67ff14aSKarl Rupp #define MATAIJVIENNACL               "aijviennacl"
59d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL            "seqaijviennacl"
60d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL            "mpiaijviennacl"
615a11e1b2SBarry Smith #define MATAIJPERM                   "aijperm"
625a11e1b2SBarry Smith #define MATSEQAIJPERM                "seqaijperm"
635a11e1b2SBarry Smith #define MATMPIAIJPERM                "mpiaijperm"
644dfdc2d9SRichard Tran Mills #define MATAIJSELL                   "aijsell"
654dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL                "seqaijsell"
664dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL                "mpiaijsell"
674a2a386eSRichard Tran Mills #define MATAIJMKL                    "aijmkl"
684a2a386eSRichard Tran Mills #define MATSEQAIJMKL                 "seqaijmkl"
694a2a386eSRichard Tran Mills #define MATMPIAIJMKL                 "mpiaijmkl"
70b5b72c8aSIrina Sokolova #define MATBAIJMKL                   "baijmkl"
71b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL                "seqbaijmkl"
72b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL                "mpibaijmkl"
73273d9f13SBarry Smith #define MATSHELL                     "shell"
74c1fff1c6SRichard Tran Mills #define MATCENTERING                 "centering"
755a11e1b2SBarry Smith #define MATDENSE                     "dense"
76637a0070SStefano Zampini #define MATDENSECUDA                 "densecuda"
7747d993e7Ssuyashtn #define MATDENSEHIP                  "densehip"
78209238afSKris Buschelman #define MATSEQDENSE                  "seqdense"
79bfc799aaSStefano Zampini #define MATSEQDENSECUDA              "seqdensecuda"
8047d993e7Ssuyashtn #define MATSEQDENSEHIP               "seqdensehip"
81273d9f13SBarry Smith #define MATMPIDENSE                  "mpidense"
82637a0070SStefano Zampini #define MATMPIDENSECUDA              "mpidensecuda"
8347d993e7Ssuyashtn #define MATMPIDENSEHIP               "mpidensehip"
84db31f6deSJed Brown #define MATELEMENTAL                 "elemental"
85d24d4204SJose E. Roman #define MATSCALAPACK                 "scalapack"
865a11e1b2SBarry Smith #define MATBAIJ                      "baij"
87273d9f13SBarry Smith #define MATSEQBAIJ                   "seqbaij"
88273d9f13SBarry Smith #define MATMPIBAIJ                   "mpibaij"
89273d9f13SBarry Smith #define MATMPIADJ                    "mpiadj"
905a11e1b2SBarry Smith #define MATSBAIJ                     "sbaij"
91273d9f13SBarry Smith #define MATSEQSBAIJ                  "seqsbaij"
92273d9f13SBarry Smith #define MATMPISBAIJ                  "mpisbaij"
93cebc7f6cSBarry Smith #define MATMFFD                      "mffd"
94c8a8475eSBarry Smith #define MATNORMAL                    "normal"
95c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN           "normalh"
96ab92ecdeSBarry Smith #define MATLRC                       "lrc"
972a6744ebSBarry Smith #define MATSCATTER                   "scatter"
98421e10b8SBarry Smith #define MATBLOCKMAT                  "blockmat"
99793850ffSBarry Smith #define MATCOMPOSITE                 "composite"
1001f8c7532SHong Zhang #define MATFFT                       "fft"
1011f8c7532SHong Zhang #define MATFFTW                      "fftw"
102e133240eSMatthew G Knepley #define MATSEQCUFFT                  "seqcufft"
10347d993e7Ssuyashtn #define MATSEQHIPFFT                 "seqhipfft"
104edd03b47SJacob Faibussowitsch #define MATTRANSPOSEMAT              PETSC_DEPRECATED_MACRO(3, 18, 0, "MATTRANSPOSEVIRTUAL", ) "transpose"
105013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL          "transpose"
106013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose"
10772ca8751SBarry Smith #define MATSCHURCOMPLEMENT           "schurcomplement"
1081d6018f0SLisandro Dalcin #define MATPYTHON                    "python"
10963c07aadSStefano Zampini #define MATHYPRE                     "hypre"
110f91d8e95SBarry Smith #define MATHYPRESTRUCT               "hyprestruct"
111a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT              "hypresstruct"
112ee1cef2cSJed Brown #define MATSUBMATRIX                 "submatrix"
1132c0dbf93SJed Brown #define MATLOCALREF                  "localref"
114d8588912SDave May #define MATNEST                      "nest"
115c094ef40SMatthew G. Knepley #define MATPREALLOCATOR              "preallocator"
116d4002b98SHong Zhang #define MATSELL                      "sell"
117d4002b98SHong Zhang #define MATSEQSELL                   "seqsell"
118d4002b98SHong Zhang #define MATMPISELL                   "mpisell"
1192d1451d4SHong Zhang #define MATSELLCUDA                  "sellcuda"
1202d1451d4SHong Zhang #define MATSEQSELLCUDA               "seqsellcuda"
1212d1451d4SHong Zhang #define MATMPISELLCUDA               "mpisellcuda"
122773bf0f6SHong Zhang #define MATSELLHIP                   "sellhip"
123773bf0f6SHong Zhang #define MATSEQSELLHIP                "seqsellhip"
124773bf0f6SHong Zhang #define MATMPISELLHIP                "mpisellhip"
125a3b2e22bSHong Zhang #define MATDUMMY                     "dummy"
126cd929ea3SAlp Dener #define MATLMVM                      "lmvm"
12778e4361aSAlp Dener #define MATLMVMDFP                   "lmvmdfp"
128bbb72809SHansol Suh #define MATLMVMDDFP                  "lmvmddfp"
12978e4361aSAlp Dener #define MATLMVMBFGS                  "lmvmbfgs"
130bbb72809SHansol Suh #define MATLMVMDBFGS                 "lmvmdbfgs"
131bbb72809SHansol Suh #define MATLMVMDQN                   "lmvmdqn"
13278e4361aSAlp Dener #define MATLMVMSR1                   "lmvmsr1"
133864588a7SAlp Dener #define MATLMVMBROYDEN               "lmvmbroyden"
134864588a7SAlp Dener #define MATLMVMBADBROYDEN            "lmvmbadbroyden"
135864588a7SAlp Dener #define MATLMVMSYMBROYDEN            "lmvmsymbroyden"
136864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN         "lmvmsymbadbroyden"
137864588a7SAlp Dener #define MATLMVMDIAGBROYDEN           "lmvmdiagbroyden"
1383423f386SBarry Smith #define MATCONSTANTDIAGONAL          "constantdiagonal"
139345a4b08SToby Isaac #define MATDIAGONAL                  "diagonal"
140c7a4214aSPierre Jolivet #define MATHTOOL                     "htool"
14153022affSStefano Zampini #define MATH2OPUS                    "h2opus"
142773941d6SBarry Smith 
14376bdecfbSBarry Smith /*J
144af27ebaaSBarry Smith    MatSolverType - String with the name of a PETSc factorization-based matrix solver type.
1459989ab13SBarry Smith 
146c2b89b5dSBarry Smith    For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc
1479989ab13SBarry Smith 
1489989ab13SBarry Smith    Level: beginner
1499989ab13SBarry Smith 
1502ef1f0ffSBarry Smith    Note:
15116a05f60SBarry Smith    `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as
15216a05f60SBarry Smith    a ./configure option to install them
153c7ccbb75SBarry Smith 
1541cc06b55SBarry Smith .seealso: [](sec_matfactor), [](ch_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()`
15576bdecfbSBarry Smith J*/
156ea799195SBarry Smith typedef const char *MatSolverType;
1572692d6eeSBarry Smith #define MATSOLVERSUPERLU      "superlu"
1582692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST "superlu_dist"
15908f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK    "strumpack"
1602692d6eeSBarry Smith #define MATSOLVERUMFPACK      "umfpack"
16120db9a53SJed Brown #define MATSOLVERCHOLMOD      "cholmod"
162d89f5e7aSBarry Smith #define MATSOLVERKLU          "klu"
163d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL    "elemental"
164d24d4204SJose E. Roman #define MATSOLVERSCALAPACK    "scalapack"
1652692d6eeSBarry Smith #define MATSOLVERESSL         "essl"
1662692d6eeSBarry Smith #define MATSOLVERLUSOL        "lusol"
1672692d6eeSBarry Smith #define MATSOLVERMUMPS        "mumps"
168d615f992SSatish Balay #define MATSOLVERMKL_PARDISO  "mkl_pardiso"
169d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO "mkl_cpardiso"
1702692d6eeSBarry Smith #define MATSOLVERPASTIX       "pastix"
1712692d6eeSBarry Smith #define MATSOLVERMATLAB       "matlab"
1722692d6eeSBarry Smith #define MATSOLVERPETSC        "petsc"
1732692d6eeSBarry Smith #define MATSOLVERBAS          "bas"
1749ae82921SPaul Mullowney #define MATSOLVERCUSPARSE     "cusparse"
175bfc799aaSStefano Zampini #define MATSOLVERCUDA         "cuda"
17647d993e7Ssuyashtn #define MATSOLVERHIPSPARSE    "hipsparse"
17747d993e7Ssuyashtn #define MATSOLVERHIP          "hip"
178930e68a5SMark Adams #define MATSOLVERKOKKOS       "kokkos"
179a2fc1e05SToby Isaac #define MATSOLVERSPQR         "spqr"
180c0cdd4a1SDahai Guo 
181b24902e0SBarry Smith /*E
182b24902e0SBarry Smith     MatFactorType - indicates what type of factorization is requested
183b24902e0SBarry Smith 
1842ef1f0ffSBarry Smith     Values:
1852ef1f0ffSBarry Smith +  `MAT_FACTOR_LU`       - LU factorization
1862ef1f0ffSBarry Smith .  `MAT_FACTOR_CHOLESKY` - Cholesky factorization
1872ef1f0ffSBarry Smith .  `MAT_FACTOR_ILU`      - ILU factorization
1882ef1f0ffSBarry Smith .  `MAT_FACTOR_ICC`      - incomplete Cholesky factorization
1892ef1f0ffSBarry Smith .  `MAT_FACTOR_ILUDT`    - ILU factorization with drop tolerance
1902ef1f0ffSBarry Smith -  `MAT_FACTOR_QR`       - QR factorization
191b24902e0SBarry Smith 
19216a05f60SBarry Smith     Level: beginner
19316a05f60SBarry Smith 
1941cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()`
195b24902e0SBarry Smith E*/
1969371c9d4SSatish Balay typedef enum {
1979371c9d4SSatish Balay   MAT_FACTOR_NONE,
1989371c9d4SSatish Balay   MAT_FACTOR_LU,
1999371c9d4SSatish Balay   MAT_FACTOR_CHOLESKY,
2009371c9d4SSatish Balay   MAT_FACTOR_ILU,
2019371c9d4SSatish Balay   MAT_FACTOR_ICC,
2029371c9d4SSatish Balay   MAT_FACTOR_ILUDT,
2039371c9d4SSatish Balay   MAT_FACTOR_QR,
2049371c9d4SSatish Balay   MAT_FACTOR_NUM_TYPES
2059371c9d4SSatish Balay } MatFactorType;
206014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[];
207e92e720dSBarry Smith 
208ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *);
209ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *);
210f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *);
211edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 15, 0, "MatFactorGetCanUseOrdering()", ) static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b)
212d71ae5a4SJacob Faibussowitsch {
2139371c9d4SSatish Balay   return MatFactorGetCanUseOrdering(A, b);
2149371c9d4SSatish Balay }
215ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *);
216014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *);
2177abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType);
2188434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode(MatSolverFn)(Mat, MatFactorType, Mat *);
2198434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatSolverFn *MatSolverFunction;
22007e0ed13SBarry Smith 
2218434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFn *);
2228434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFn **);
223edd03b47SJacob Faibussowitsch typedef MatSolverType       MatSolverPackage PETSC_DEPRECATED_TYPEDEF(3, 9, 0, "MatSolverType", );
2248434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeRegister()", ) static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFn *f)
225d71ae5a4SJacob Faibussowitsch {
2269371c9d4SSatish Balay   return MatSolverTypeRegister(stype, mtype, ftype, f);
2279371c9d4SSatish Balay }
2288434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeGet()", ) static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFn **f)
229d71ae5a4SJacob Faibussowitsch {
2309371c9d4SSatish Balay   return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f);
2319371c9d4SSatish Balay }
2329989ab13SBarry Smith 
2334222ddf1SHong Zhang /*E
23495bd0b28SBarry Smith     MatProductType - indicates what type of matrix product to compute
2354222ddf1SHong Zhang 
2362ef1f0ffSBarry Smith     Values:
2372ef1f0ffSBarry Smith +  `MATPRODUCT_AB`   - product of two matrices
2382ef1f0ffSBarry Smith .  `MATPRODUCT_AtB`  - product of the transpose of a given matrix with a matrix
2392ef1f0ffSBarry Smith .  `MATPRODUCT_ABt`  - product of a matrix with the transpose of another given matrix
2402ef1f0ffSBarry Smith .  `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself
2412ef1f0ffSBarry Smith .  `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix
2422ef1f0ffSBarry Smith -  `MATPRODUCT_ABC`  - the product of three matrices
2432ef1f0ffSBarry Smith 
24416a05f60SBarry Smith     Level: beginner
24516a05f60SBarry Smith 
2461cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatProductSetType()`
2474222ddf1SHong Zhang E*/
2489371c9d4SSatish Balay typedef enum {
2499371c9d4SSatish Balay   MATPRODUCT_UNSPECIFIED = 0,
2509371c9d4SSatish Balay   MATPRODUCT_AB,
2519371c9d4SSatish Balay   MATPRODUCT_AtB,
2529371c9d4SSatish Balay   MATPRODUCT_ABt,
2539371c9d4SSatish Balay   MATPRODUCT_PtAP,
2549371c9d4SSatish Balay   MATPRODUCT_RARt,
2559371c9d4SSatish Balay   MATPRODUCT_ABC
2569371c9d4SSatish Balay } MatProductType;
257544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[];
2584222ddf1SHong Zhang 
2594222ddf1SHong Zhang /*J
2604222ddf1SHong Zhang     MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation
2614222ddf1SHong Zhang 
2624222ddf1SHong Zhang    Level: beginner
2634222ddf1SHong Zhang 
2641cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType`
2654222ddf1SHong Zhang J*/
2664222ddf1SHong Zhang typedef const char *MatProductAlgorithm;
2673e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT         "default"
2683e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED          "sorted"
2693e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE        "scalable"
2703e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST    "scalable_fast"
2713e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP            "heap"
2723e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP           "btheap"
2733e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED     "llcondensed"
2743e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE        "rowmerge"
2753e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT    "outerproduct"
2763e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB             "at*b"
2773e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP             "rap"
2783e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE     "nonscalable"
2793e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI          "seqmpi"
2803e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND         "backend"
2813e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING     "overlapping"
2823e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED          "merged"
2833e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE       "allatonce"
2843e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged"
2853e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV      "allgatherv"
2863e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC          "cyclic"
2873e662e0bSHong Zhang #if defined(PETSC_HAVE_HYPRE)
2883e662e0bSHong Zhang   #define MATPRODUCTALGORITHMHYPRE "hypre"
2893e662e0bSHong Zhang #endif
2904222ddf1SHong Zhang 
2914222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *);
2924222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat);
2934222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType);
2944222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm);
2958fcac130SJose E. Roman PETSC_EXTERN PetscErrorCode MatProductGetAlgorithm(Mat, MatProductAlgorithm *);
2964222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal);
2974222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat);
2984222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat);
2994222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat);
3004222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat);
3014417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat);
3026718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer);
303c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *);
304c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *);
3054222ddf1SHong Zhang 
306c06d978dSMatthew Knepley /* Logging support */
3070700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */
308014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID;
309335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID;
310014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID;
311014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID;
312014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID;
313014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID;
314014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID;
315014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID;
316c06d978dSMatthew Knepley 
317ceb03754SKris Buschelman /*E
3182ef1f0ffSBarry Smith    MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions
319cf37664fSBarry Smith    are to be reused to store the new matrix values.
320cf37664fSBarry Smith 
3212ef1f0ffSBarry Smith    Values:
3222ef1f0ffSBarry Smith +  `MAT_INITIAL_MATRIX` - create a new matrix
3232ef1f0ffSBarry Smith .  `MAT_REUSE_MATRIX`   - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX`
3242ef1f0ffSBarry Smith .  `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions)
3252ef1f0ffSBarry Smith -  `MAT_IGNORE_MATRIX`  - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions)
326ceb03754SKris Buschelman 
327ceb03754SKris Buschelman     Level: beginner
328ceb03754SKris Buschelman 
3291cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()`
330ceb03754SKris Buschelman E*/
3319371c9d4SSatish Balay typedef enum {
3329371c9d4SSatish Balay   MAT_INITIAL_MATRIX,
3339371c9d4SSatish Balay   MAT_REUSE_MATRIX,
3349371c9d4SSatish Balay   MAT_IGNORE_MATRIX,
3359371c9d4SSatish Balay   MAT_INPLACE_MATRIX
3369371c9d4SSatish Balay } MatReuse;
337ceb03754SKris Buschelman 
3385494a064SHong Zhang /*E
3392ef1f0ffSBarry Smith     MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()`
3402ef1f0ffSBarry Smith     include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`.
3415494a064SHong Zhang 
3422ef1f0ffSBarry Smith     Values:
3432ef1f0ffSBarry Smith +  `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values
3442ef1f0ffSBarry Smith -  `MAT_GET_VALUES`        - copy the matrix values
3452ef1f0ffSBarry Smith 
34695bd0b28SBarry Smith     Level: developer
34795bd0b28SBarry Smith 
3482ef1f0ffSBarry Smith     Developer Note:
3492ef1f0ffSBarry Smith     Why is not just a boolean used for this information?
3502ef1f0ffSBarry Smith 
3511cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()`
3525494a064SHong Zhang E*/
3539371c9d4SSatish Balay typedef enum {
3549371c9d4SSatish Balay   MAT_DO_NOT_GET_VALUES,
3559371c9d4SSatish Balay   MAT_GET_VALUES
3569371c9d4SSatish Balay } MatCreateSubMatrixOption;
3575494a064SHong Zhang 
358607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void);
3594bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatFinalizePackage(void);
360c06d978dSMatthew Knepley 
361014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *);
36277433607SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFromOptions(MPI_Comm, const char *, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
363014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt);
36419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType);
3650d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *);
3660d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType);
367014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat);
368fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]);
369bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat));
37023bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]);
371014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]);
37226cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]);
37326cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]);
374014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]);
375014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]);
3765d5d24bbSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatGetState(Mat, PetscObjectState *);
37784d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool);
378f69a0ea3SMatthew Knepley 
379140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList;
380140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList;
381140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList;
38228988994SBarry Smith 
3833b224e63SBarry Smith /*E
384aa6c7ce3SBarry Smith    MatStructure - Indicates if two matrices have the same nonzero structure
3853b224e63SBarry Smith 
3862ef1f0ffSBarry Smith    Values:
3872ef1f0ffSBarry Smith +  `SAME_NONZERO_PATTERN`      - the two matrices have identical nonzero patterns
3882ef1f0ffSBarry Smith .  `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns
3892ef1f0ffSBarry Smith .  `SUBSET_NONZERO_PATTERN`    - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix
3902ef1f0ffSBarry Smith -  `UNKNOWN_NONZERO_PATTERN`   - there is no known relationship between the nonzero patterns. In this case the implementations
3912ef1f0ffSBarry Smith                                  may try to detect a relationship to optimize the operation
392531d0c6aSBarry Smith 
39316a05f60SBarry Smith    Level: beginner
39416a05f60SBarry Smith 
395af27ebaaSBarry Smith    Note:
396af27ebaaSBarry Smith    Certain matrix operations (such as `MatAXPY()`) can run much faster if the sparsity pattern of the matrices are the same. But actually determining if
397af27ebaaSBarry Smith    the patterns are the same may be costly. This provides a way for users who know something about the sparsity patterns to provide this information
398af27ebaaSBarry Smith    to certain PETSc routines.
399af27ebaaSBarry Smith 
4001cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()`
4013b224e63SBarry Smith E*/
4029371c9d4SSatish Balay typedef enum {
4039371c9d4SSatish Balay   DIFFERENT_NONZERO_PATTERN,
4049371c9d4SSatish Balay   SUBSET_NONZERO_PATTERN,
4059371c9d4SSatish Balay   SAME_NONZERO_PATTERN,
4069371c9d4SSatish Balay   UNKNOWN_NONZERO_PATTERN
4079371c9d4SSatish Balay } MatStructure;
408d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[];
4093b224e63SBarry Smith 
4109779e05dSSatish Balay #if defined PETSC_HAVE_MKL_SPARSE
411ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
412ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
41380095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
414ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
41580095d54SIrina Sokolova #endif
416cd929ea3SAlp Dener 
4174bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
4184bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
4194bf303faSJacob Faibussowitsch 
420d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
421d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
422d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]);
423d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
42407e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *);
42507e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *);
42607e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *);
42707e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt);
428b921024eSHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *);
42980095d54SIrina Sokolova 
4304bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
4314bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
432fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
433fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetSeqSELL(Mat, Mat *, Mat *, const PetscInt *[]);
4344bf303faSJacob Faibussowitsch 
435014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
436014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
437014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
438014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
439014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4408f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4416a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]);
442014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *);
4433b00a383SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *);
4443b00a383SHong Zhang 
445014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
446014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
447014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4487e8381f9SStefano Zampini 
449e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]);
45082a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]);
4517e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode);
452d21a29f3SJed Brown 
453014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *);
454014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
455d21a29f3SJed Brown 
456014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
457014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
45838f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
459014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4604cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]);
461dfb205c3SBarry Smith 
462014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *);
463c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *);
464014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *);
465c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *);
466986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *);
467267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *);
468bcf2175cSMatthew Knepley PETSC_EXTERN PetscErrorCode MatLRCSetMats(Mat, Mat, Mat, Vec, Mat);
469c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *);
470014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
471014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
472c0cdd4a1SDahai Guo 
473014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *);
474014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter);
475014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *);
476014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *);
477014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat);
478014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat);
4799371c9d4SSatish Balay typedef enum {
4809371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_RIGHT,
4819371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_LEFT
4829371c9d4SSatish Balay } MatCompositeMergeType;
4838c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType);
484014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *);
4850da935d5SPierre Jolivet /*E
4860da935d5SPierre Jolivet     MatCompositeType - indicates what type of `MATCOMPOSITE` is used
4870da935d5SPierre Jolivet 
4880da935d5SPierre Jolivet     Values:
4890da935d5SPierre Jolivet +  `MAT_COMPOSITE_ADDITIVE`       - sum of matrices (default)
4900da935d5SPierre Jolivet -  `MAT_COMPOSITE_MULTIPLICATIVE` - product of matrices
4910da935d5SPierre Jolivet 
4920da935d5SPierre Jolivet     Level: beginner
4930da935d5SPierre Jolivet 
4940da935d5SPierre Jolivet .seealso: [](ch_matrices), `MATCOMPOSITE`, `MatCompositeSetType()`, `MatCompositeGetType()`
4950da935d5SPierre Jolivet E*/
4969371c9d4SSatish Balay typedef enum {
4979371c9d4SSatish Balay   MAT_COMPOSITE_ADDITIVE,
4989371c9d4SSatish Balay   MAT_COMPOSITE_MULTIPLICATIVE
4999371c9d4SSatish Balay } MatCompositeType;
500014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType);
5016dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *);
5023b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure);
5033b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *);
5046d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *);
5058b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *);
50603049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *);
5076d7c1e57SBarry Smith 
50819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *);
509014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *);
510dedccee8SHong Zhang 
511014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *);
5128060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *);
513d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *);
51406511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *);
515fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *);
51665f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *);
51754e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *);
51854e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS);
519014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *);
5203423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *);
521345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatCreateDiagonal(Vec, Mat *);
522345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetDiagonal(Mat, Vec *);
523345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreDiagonal(Mat, Vec *);
524345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetInverseDiagonal(Mat, Vec *);
525345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreInverseDiagonal(Mat, Vec *);
5261472f72bSBarry Smith 
527978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE)
528d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
529978814f1SStefano Zampini #endif
530978814f1SStefano Zampini 
531014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]);
532ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]);
533cc4c1da9SBarry Smith PETSC_EXTERN PetscErrorCode MatPythonCreate(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const char[], Mat *);
5341d6018f0SLisandro Dalcin 
535846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat);
536014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat);
537014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *);
538e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *);
53921c89e3eSBarry Smith 
540014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat);
541014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat);
542014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat);
543014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *);
544014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *);
545713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **);
5460da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *);
547479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat);
5488a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *);
54920c04d79SPierre Jolivet PETSC_EXTERN PetscErrorCode MatComputeVariableBlockEnvelope(Mat);
55099cafbc1SBarry Smith 
551014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
5528a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode);
553014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
554014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]);
555014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]);
556014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]);
55773a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom);
55884cb2905SBarry Smith 
5592ef4de8bSBarry Smith /*S
5602ef1f0ffSBarry Smith    MatStencil - Data structure (C struct) for storing information about rows and
5612ef1f0ffSBarry Smith    columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()`
56262ef0227SBarry Smith 
5632ef1f0ffSBarry Smith    Level: beginner
5642ef1f0ffSBarry Smith 
5652ef1f0ffSBarry Smith    Notes:
56662ef0227SBarry Smith    The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored).
56715229ffcSPierre Jolivet    The c represents the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored.
56862ef0227SBarry Smith 
56987497f52SBarry Smith    For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`.
570be479b30SJed Brown 
5712ef1f0ffSBarry Smith    For staggered grids, see `DMStagStencil`
5722ef4de8bSBarry Smith 
5732ef1f0ffSBarry Smith    Fortran Note:
5742ef1f0ffSBarry Smith    See `MatSetValuesStencil()` for details.
5752ef4de8bSBarry Smith 
5761cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`,
5772ef1f0ffSBarry Smith           `DMStagStencil`
5782ef4de8bSBarry Smith S*/
579435da068SBarry Smith typedef struct {
580c1ac3661SBarry Smith   PetscInt k, j, i, c;
581435da068SBarry Smith } MatStencil;
5822ef4de8bSBarry Smith 
583014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
584014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
585014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt);
586435da068SBarry Smith 
587d91e6319SBarry Smith /*E
5882ef1f0ffSBarry Smith     MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use
589d91e6319SBarry Smith 
5902ef1f0ffSBarry Smith     Values:
5912ef1f0ffSBarry Smith +   `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix
5922ef1f0ffSBarry Smith -   `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted
5932ef1f0ffSBarry Smith 
59416a05f60SBarry Smith     Level: beginner
59516a05f60SBarry Smith 
5961cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()`
597d91e6319SBarry Smith E*/
5989371c9d4SSatish Balay typedef enum {
5999371c9d4SSatish Balay   MAT_FLUSH_ASSEMBLY = 1,
6009371c9d4SSatish Balay   MAT_FINAL_ASSEMBLY = 0
6019371c9d4SSatish Balay } MatAssemblyType;
6024f58015eSStefano Zampini 
603014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType);
604014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType);
605014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *);
6064f9c727eSBarry Smith 
607d91e6319SBarry Smith /*E
6082ef1f0ffSBarry Smith    MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage
609d91e6319SBarry Smith 
610d91e6319SBarry Smith    Level: beginner
611d91e6319SBarry Smith 
6122ef1f0ffSBarry Smith    Note:
6132ef1f0ffSBarry Smith    See `MatSetOption()` for the use of the options
6142ef1f0ffSBarry Smith 
6152ef1f0ffSBarry Smith    Developer Note:
61695452b02SPatrick Sanan    Entries that are negative need not be called collectively by all processes.
617382164b0SBarry Smith 
6181cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetOption()`
619d91e6319SBarry Smith E*/
6209371c9d4SSatish Balay typedef enum {
6219371c9d4SSatish Balay   MAT_OPTION_MIN                  = -3,
622c5e4d11fSDmitry Karpeev   MAT_UNUSED_NONZERO_LOCATION_ERR = -2,
62392d4d306SBarry Smith   MAT_ROW_ORIENTED                = -1,
624382164b0SBarry Smith   MAT_SYMMETRIC                   = 1,
625382164b0SBarry Smith   MAT_STRUCTURALLY_SYMMETRIC      = 2,
6268c78258cSHong Zhang   MAT_FORCE_DIAGONAL_ENTRIES      = 3,
627382164b0SBarry Smith   MAT_IGNORE_OFF_PROC_ENTRIES     = 4,
628382164b0SBarry Smith   MAT_USE_HASH_TABLE              = 5,
629382164b0SBarry Smith   MAT_KEEP_NONZERO_PATTERN        = 6,
630382164b0SBarry Smith   MAT_IGNORE_ZERO_ENTRIES         = 7,
631382164b0SBarry Smith   MAT_USE_INODES                  = 8,
632382164b0SBarry Smith   MAT_HERMITIAN                   = 9,
633382164b0SBarry Smith   MAT_SYMMETRY_ETERNAL            = 10,
634c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_LOCATION_ERR    = 11,
635382164b0SBarry Smith   MAT_IGNORE_LOWER_TRIANGULAR     = 12,
636382164b0SBarry Smith   MAT_ERROR_LOWER_TRIANGULAR      = 13,
637382164b0SBarry Smith   MAT_GETROW_UPPERTRIANGULAR      = 14,
638382164b0SBarry Smith   MAT_SPD                         = 15,
63992d4d306SBarry Smith   MAT_NO_OFF_PROC_ZERO_ROWS       = 16,
64092d4d306SBarry Smith   MAT_NO_OFF_PROC_ENTRIES         = 17,
64192d4d306SBarry Smith   MAT_NEW_NONZERO_LOCATIONS       = 18,
642c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_ALLOCATION_ERR  = 19,
643c5e4d11fSDmitry Karpeev   MAT_SUBSET_OFF_PROC_ENTRIES     = 20,
644c10200c1SHong Zhang   MAT_SUBMAT_SINGLEIS             = 21,
645957cac9fSHong Zhang   MAT_STRUCTURE_ONLY              = 22,
646071fcb05SBarry Smith   MAT_SORTED_FULL                 = 23,
6471a2c6b5cSJunchao Zhang   MAT_FORM_EXPLICIT_TRANSPOSE     = 24,
648b94d7dedSBarry Smith   MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25,
649b94d7dedSBarry Smith   MAT_SPD_ETERNAL                 = 26,
6509371c9d4SSatish Balay   MAT_OPTION_MAX                  = 27
6519371c9d4SSatish Balay } MatOption;
652e057df02SPaul Mullowney 
6530f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions;
654014dd563SJed Brown PETSC_EXTERN PetscErrorCode     MatSetOption(Mat, MatOption, PetscBool);
6557d68702bSBarry Smith PETSC_EXTERN PetscErrorCode     MatGetOption(Mat, MatOption, PetscBool *);
656856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode     MatPropagateSymmetryOptions(Mat, Mat);
65719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode     MatGetType(Mat, MatType *);
65884cb2905SBarry Smith 
659014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
660014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
661014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
662014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRowUpperTriangular(Mat);
663014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRowUpperTriangular(Mat);
664014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetColumnVector(Mat, Vec, PetscInt);
6658c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArray(Mat, PetscScalar *[]);
6668f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]);
667d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]);
6688c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArray(Mat, PetscScalar *[]);
6698f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]);
670d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]);
67121e72a00SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *);
672bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
6734099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetType(Mat, MatType);
674ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode    MatSeqAIJKron(Mat, Mat, MatReuse, Mat *);
675388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode    MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *));
6764099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList;
677cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJGetArray(Mat, PetscScalar *[]);
678cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJRestoreArray(Mat, PetscScalar *[]);
6798397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJGetArray(Mat, PetscScalar *[]);
6808397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]);
6818c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArray(Mat, PetscScalar *[]);
6828c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArray(Mat, PetscScalar *[]);
683d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDensePlaceArray(Mat, const PetscScalar[]);
684d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseReplaceArray(Mat, const PetscScalar[]);
685d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseResetArray(Mat);
6868572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArrayRead(Mat, const PetscScalar *[]);
6878572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayRead(Mat, const PetscScalar *[]);
6886947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWrite(Mat, PetscScalar *[]);
6896947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWrite(Mat, PetscScalar *[]);
690cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *);
691cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]);
692cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *);
693cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]);
694cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *);
695cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]);
696014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSize(Mat, PetscInt *);
697014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSize(Mat, PetscInt);
698014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSizes(Mat, PetscInt *, PetscInt *);
699014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizes(Mat, PetscInt, PetscInt);
70033d57670SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizesFromMats(Mat, Mat, Mat);
7016e25ca73SStefano Zampini PETSC_EXTERN PetscErrorCode    MatSetVariableBlockSizes(Mat, PetscInt, const PetscInt[]);
7026e25ca73SStefano Zampini PETSC_EXTERN PetscErrorCode    MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt *[]);
7030da83c2eSBarry Smith 
70486aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]);
70586aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]);
7066947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *);
7076947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *);
7086947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *);
7096947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *);
7106947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *);
7116947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *);
712a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
7135ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *);
7141620fd73SBarry Smith 
715014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec);
716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec);
717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec);
718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec);
719014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec);
720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *);
721014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *);
722014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec);
723014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec);
724014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat);
725bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat);
726eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat);
727f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec);
728f5edf698SHong Zhang 
729d91e6319SBarry Smith /*E
730d91e6319SBarry Smith   MatDuplicateOption - Indicates if a duplicated sparse matrix should have
731d91e6319SBarry Smith   its numerical values copied over or just its nonzero structure.
732d91e6319SBarry Smith 
7332ef1f0ffSBarry Smith   Values:
7342ef1f0ffSBarry Smith + `MAT_DO_NOT_COPY_VALUES`    - Create a matrix using the same nonzero pattern as the original matrix,
7352ef1f0ffSBarry Smith                                 with zeros for the numerical values
7362ef1f0ffSBarry Smith . `MAT_COPY_VALUES`           - Create a matrix with the same nonzero pattern as the original matrix
7372ef1f0ffSBarry Smith                                 and with the same numerical values.
7382ef1f0ffSBarry Smith - `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix
7392ef1f0ffSBarry Smith                                 and does not copy it, using zeros for the numerical values. The parent and
7402ef1f0ffSBarry Smith                                 child matrices will share their index (i and j) arrays, and you cannot
7412ef1f0ffSBarry Smith                                 insert new nonzero entries into either matrix
7420018da39SRichard Tran Mills 
74316a05f60SBarry Smith   Level: beginner
74416a05f60SBarry Smith 
74587497f52SBarry Smith   Note:
74687497f52SBarry Smith   Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in
74787497f52SBarry Smith   this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified.
74870dcbbb9SBarry Smith 
7491cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicate()`
750d91e6319SBarry Smith E*/
7519371c9d4SSatish Balay typedef enum {
7529371c9d4SSatish Balay   MAT_DO_NOT_COPY_VALUES,
7539371c9d4SSatish Balay   MAT_COPY_VALUES,
7549371c9d4SSatish Balay   MAT_SHARE_NONZERO_PATTERN
7559371c9d4SSatish Balay } MatDuplicateOption;
7562e8a6d31SBarry Smith 
75719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *);
758014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *);
75994a9d846SBarry Smith 
760014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure);
761014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer);
762014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *);
763014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *);
764014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *);
765014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *);
766014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *);
767b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *);
768b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *);
769014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *);
770014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer);
7717b80b807SBarry Smith 
7721a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7731a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7741a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7751a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
776d4fbbf0eSBarry Smith 
777d91e6319SBarry Smith /*S
77887497f52SBarry Smith    MatInfo - Context of matrix information, used with `MatGetInfo()`
779d91e6319SBarry Smith 
780d91e6319SBarry Smith    Level: intermediate
781d91e6319SBarry Smith 
7822ef1f0ffSBarry Smith    Fortran Note:
7832ef1f0ffSBarry Smith    Information is stored as a double-precision array of dimension `MAT_INFO_SIZE`
7842ef1f0ffSBarry Smith 
7851cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetInfo()`, `MatInfoType`
786d91e6319SBarry Smith S*/
7874e220ebcSLois Curfman McInnes typedef struct {
788b0a32e0cSBarry Smith   PetscLogDouble block_size;                          /* block size */
789b0a32e0cSBarry Smith   PetscLogDouble nz_allocated, nz_used, nz_unneeded;  /* number of nonzeros */
790b0a32e0cSBarry Smith   PetscLogDouble memory;                              /* memory allocated */
791b0a32e0cSBarry Smith   PetscLogDouble assemblies;                          /* number of matrix assemblies called */
792b0a32e0cSBarry Smith   PetscLogDouble mallocs;                             /* number of mallocs during MatSetValues() */
793b0a32e0cSBarry Smith   PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */
794b0a32e0cSBarry Smith   PetscLogDouble factor_mallocs;                      /* number of mallocs during factorization */
7954e220ebcSLois Curfman McInnes } MatInfo;
7964e220ebcSLois Curfman McInnes 
797d9274352SBarry Smith /*E
798d9274352SBarry Smith     MatInfoType - Indicates if you want information about the local part of the matrix,
799d9274352SBarry Smith     the entire parallel matrix or the maximum over all the local parts.
800d9274352SBarry Smith 
8012ef1f0ffSBarry Smith     Values:
8022ef1f0ffSBarry Smith +   `MAT_LOCAL`      - values for each MPI process part of the matrix
8032ef1f0ffSBarry Smith .   `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes
8042ef1f0ffSBarry Smith -   `MAT_GLOBAL_SUM` - sum of each value over all MPI processes
805d9274352SBarry Smith 
80616a05f60SBarry Smith     Level: beginner
80716a05f60SBarry Smith 
8081cc06b55SBarry Smith .seealso: [](ch_matrices), `MatGetInfo()`, `MatInfo`
809d9274352SBarry Smith E*/
8109371c9d4SSatish Balay typedef enum {
8119371c9d4SSatish Balay   MAT_LOCAL      = 1,
8129371c9d4SSatish Balay   MAT_GLOBAL_MAX = 2,
8139371c9d4SSatish Balay   MAT_GLOBAL_SUM = 3
8149371c9d4SSatish Balay } MatInfoType;
815014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *);
816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec);
817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]);
818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]);
819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]);
820eede4a3fSMark Adams PETSC_EXTERN PetscErrorCode MatGetRowSumAbs(Mat, Vec);
821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]);
822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec);
823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *);
8247fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *);
8257fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat);
826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *);
827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *);
828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec);
829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode);
830a52676ecSHong Zhang 
831014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *);
832014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *);
833014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *);
834014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
835014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
836e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
837e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
838a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
839a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
840cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
8414222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
842447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
84386919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *);
8447b80b807SBarry Smith 
845014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *);
846014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *);
847857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *);
848857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *);
849857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *);
850857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *);
851857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *);
852857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *);
853857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *);
854014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat);
8551b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat);
856014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
857014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec);
858014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
859014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
860014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
861014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec);
8627b80b807SBarry Smith 
863014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *);
864014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *);
865014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *);
866014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **);
867014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *);
868014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **);
869566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *);
8705ef9f2a5SBarry Smith 
8717dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
872edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrices()", ) static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
873d71ae5a4SJacob Faibussowitsch {
8749371c9d4SSatish Balay   return MatCreateSubMatrices(mat, n, irow, icol, scall, submat);
8759371c9d4SSatish Balay }
8767dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
877edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatricesMPI()", ) static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
878d71ae5a4SJacob Faibussowitsch {
8799371c9d4SSatish Balay   return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat);
8809371c9d4SSatish Balay }
881014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]);
882df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]);
8837dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *);
884edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrix()", ) static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat)
885d71ae5a4SJacob Faibussowitsch {
8869371c9d4SSatish Balay   return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat);
8879371c9d4SSatish Balay }
888014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *);
889014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *);
890014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *);
891014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *);
8927b80b807SBarry Smith 
893014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *);
894014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *);
895014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat);
896014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *);
8978a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *);
898014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
899ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *);
900f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *);
901014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *);
902014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]);
9038efafbd8SBarry Smith 
904014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt);
905aa1e27eaSFande Kong PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov);
906d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool);
9077b80b807SBarry Smith 
908014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
90922440eb1SKris Buschelman 
9107bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
9112df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
9127bab7c10SHong Zhang 
913014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *);
914014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *);
91522440eb1SKris Buschelman 
916014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
917014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *);
918bc011b1eSHong Zhang 
919014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure);
920014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure);
9211c741599SHong Zhang 
922014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar);
923014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar);
9247b80b807SBarry Smith 
925014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping);
926014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
927a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *);
92881fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout);
929014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
930014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
931014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
932014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
933e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
934014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
935014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
936052efed2SBarry Smith 
937014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt);
938014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *);
93990f02eecSBarry Smith 
940014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec);
941014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec);
942014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec);
94330b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *);
94430b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *);
94530b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *);
9462a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *);
947edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 6, 0, "MatCreateVecs()", ) static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y)
948d71ae5a4SJacob Faibussowitsch {
9499371c9d4SSatish Balay   return MatCreateVecs(mat, x, y);
9509371c9d4SSatish Balay }
95153cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *);
952014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *);
953014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *);
9543a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *);
9559c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *);
956bd481603SBarry Smith 
957c8d6c325SJunchao Zhang /*@C
9581620fd73SBarry Smith    MatSetValue - Set a single entry into a matrix.
9591620fd73SBarry Smith 
960e1c5b2e2SJose E. Roman    Not Collective
961a9834a7dSSatish Balay 
9621620fd73SBarry Smith    Input Parameters:
963c8d6c325SJunchao Zhang +  mat  - the matrix
96416a05f60SBarry Smith .  i    - the row location of the entry
96516a05f60SBarry Smith .  j    - the column location of the entry
96616a05f60SBarry Smith .  va   - the value to insert
96787497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
9681620fd73SBarry Smith 
9691620fd73SBarry Smith    Level: beginner
9701620fd73SBarry Smith 
97195bd0b28SBarry Smith    Notes:
97295bd0b28SBarry Smith    This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()`
97395bd0b28SBarry Smith    MUST be called after all calls to `MatSetValue()` have been completed.
97495bd0b28SBarry Smith 
9752ef1f0ffSBarry Smith    For efficiency one should use `MatSetValues()` and set several values simultaneously.
9762ef1f0ffSBarry Smith 
977b43fc34aSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `InsertMode`, `MatGetValue()`, `MatSetValues()`,
9782ef1f0ffSBarry Smith           `MatSetValueLocal()`, `MatSetValuesLocal()`
979c8d6c325SJunchao Zhang @*/
980c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValue(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
981d71ae5a4SJacob Faibussowitsch {
982c8d6c325SJunchao Zhang   return MatSetValues(mat, 1, &i, 1, &j, &va, mode);
9839371c9d4SSatish Balay }
9841620fd73SBarry Smith 
985e5e5a7b5SPatrick Sanan /*@C
986e5e5a7b5SPatrick Sanan    MatGetValue - Gets a single value from a matrix
9871620fd73SBarry Smith 
988e5e5a7b5SPatrick Sanan    Not Collective; can only return a value owned by the given process
989e5e5a7b5SPatrick Sanan 
990e5e5a7b5SPatrick Sanan    Input Parameters:
991e5e5a7b5SPatrick Sanan +  mat - the matrix
992e5e5a7b5SPatrick Sanan .  row - the row location of the entry
993e5e5a7b5SPatrick Sanan -  col - the column location of the entry
994e5e5a7b5SPatrick Sanan 
995e5e5a7b5SPatrick Sanan    Output Parameter:
996e5e5a7b5SPatrick Sanan .  va - the value
997e5e5a7b5SPatrick Sanan 
9982ef1f0ffSBarry Smith    Level: advanced
9992ef1f0ffSBarry Smith 
1000e5e5a7b5SPatrick Sanan    Notes:
1001b43fc34aSPierre Jolivet    The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd()` before this call
10022ef1f0ffSBarry Smith 
100387497f52SBarry Smith    For efficiency one should use `MatGetValues()` and get several values simultaneously.
1004e5e5a7b5SPatrick Sanan 
100587497f52SBarry Smith    See notes for `MatGetValues()`.
1006e5e5a7b5SPatrick Sanan 
1007b43fc34aSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()`
1008e5e5a7b5SPatrick Sanan @*/
1009d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va)
1010d71ae5a4SJacob Faibussowitsch {
10119371c9d4SSatish Balay   return MatGetValues(mat, 1, &row, 1, &col, va);
10129371c9d4SSatish Balay }
1013e5e5a7b5SPatrick Sanan 
1014c8d6c325SJunchao Zhang /*@C
10152ef1f0ffSBarry Smith    MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes.
1016e5e5a7b5SPatrick Sanan 
1017e5e5a7b5SPatrick Sanan    Not Collective
1018e5e5a7b5SPatrick Sanan 
1019e5e5a7b5SPatrick Sanan    Input Parameters:
1020c8d6c325SJunchao Zhang +  mat  - the matrix
102116a05f60SBarry Smith .  i    - the row location of the entry
102216a05f60SBarry Smith .  j    - the column location of the entry
102316a05f60SBarry Smith .  va   - the value to insert
102487497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
1025e5e5a7b5SPatrick Sanan 
10262ef1f0ffSBarry Smith    Level: intermediate
10272ef1f0ffSBarry Smith 
1028e5e5a7b5SPatrick Sanan    Notes:
102987497f52SBarry Smith    For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously.
1030e5e5a7b5SPatrick Sanan 
103187497f52SBarry Smith    See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used.
1032e5e5a7b5SPatrick Sanan 
10331cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSetValue()`, `MatSetValuesLocal()`
1034c8d6c325SJunchao Zhang @*/
1035c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValueLocal(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
1036d71ae5a4SJacob Faibussowitsch {
1037c8d6c325SJunchao Zhang   return MatSetValuesLocal(mat, 1, &i, 1, &j, &va, mode);
10389371c9d4SSatish Balay }
10391620fd73SBarry Smith 
10401620fd73SBarry Smith /*MC
1041d0609cedSBarry Smith    MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per
1042bd481603SBarry Smith    row in a matrix providing the data that one can use to correctly preallocate the matrix.
1043bd481603SBarry Smith 
1044bd481603SBarry Smith    Synopsis:
1045aaa7dc30SBarry Smith    #include <petscmat.h>
1046d0609cedSBarry Smith    PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz)
1047bd481603SBarry Smith 
1048d083f849SBarry Smith    Collective
1049bd481603SBarry Smith 
1050bd481603SBarry Smith    Input Parameters:
1051bd481603SBarry Smith +  comm  - the communicator that will share the eventually allocated matrix
1052859fcb39SBarry Smith .  nrows - the number of LOCAL rows in the matrix
1053859fcb39SBarry Smith -  ncols - the number of LOCAL columns in the matrix
1054bd481603SBarry Smith 
1055bd481603SBarry Smith    Output Parameters:
1056bd481603SBarry Smith +  dnz - the array that will be passed to the matrix preallocation routines
1057a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1058bd481603SBarry Smith 
10592ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1060bd481603SBarry Smith 
1061bd481603SBarry Smith    Notes:
10622ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
10632ef1f0ffSBarry Smith    the use of this routine
10642ef1f0ffSBarry Smith 
1065d0609cedSBarry Smith    This is a macro that handles its own error checking, it does not return an error code.
1066d0609cedSBarry Smith 
10672ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1068bd481603SBarry Smith 
10692ef1f0ffSBarry Smith    Developer Note:
1070af27ebaaSBarry Smith    This is a MACRO, not a function, because it has a leading { that is closed by `PetscPreallocateFinalize()`.
1071bd481603SBarry Smith 
10721cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1073db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1074bd481603SBarry Smith M*/
10759371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \
10769371c9d4SSatish Balay   do { \
10773ba16761SJacob Faibussowitsch     PetscInt              __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \
10783ba16761SJacob Faibussowitsch     PetscInt PETSC_UNUSED __start; \
10799566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \
10809566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \
10819371c9d4SSatish Balay     __start = __end - __ncols; \
10829371c9d4SSatish Balay     (void)__start; \
10839566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \
10845f80ce2aSJacob Faibussowitsch   __rstart -= __nrows
10857c922b88SBarry Smith 
1086edd03b47SJacob Faibussowitsch #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateBegin()", ) MatPreallocateBegin(__VA_ARGS__)
1087d0609cedSBarry Smith 
1088bd481603SBarry Smith /*MC
1089bd481603SBarry Smith    MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1090bd481603SBarry Smith    inserted using a local number of the rows and columns
1091bd481603SBarry Smith 
1092bd481603SBarry Smith    Synopsis:
1093aaa7dc30SBarry Smith    #include <petscmat.h>
1094c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1095bd481603SBarry Smith 
1096bd481603SBarry Smith    Not Collective
1097bd481603SBarry Smith 
1098bd481603SBarry Smith    Input Parameters:
1099784ac674SJed Brown +  map   - the row mapping from local numbering to global numbering
1100bd481603SBarry Smith .  nrows - the number of rows indicated
11011d73ed98SBarry Smith .  rows  - the indices of the rows
1102784ac674SJed Brown .  cmap  - the column mapping from local to global numbering
1103bd481603SBarry Smith .  ncols - the number of columns in the matrix
1104bd481603SBarry Smith .  cols  - the columns indicated
1105bd481603SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1106a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1107bd481603SBarry Smith 
11082ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1109bd481603SBarry Smith 
1110bd481603SBarry Smith    Notes:
11112ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11122ef1f0ffSBarry Smith    the use of this routine
1113bd481603SBarry Smith 
11142ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1115bd481603SBarry Smith 
11161cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1117db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()`
1118bd481603SBarry Smith M*/
111994bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11209371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1121c4f061fbSSatish Balay 
1122bd481603SBarry Smith /*MC
1123c1154cd5SBarry Smith    MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1124c1154cd5SBarry Smith    inserted using a local number of the rows and columns. This version removes any duplicate columns in cols
1125c1154cd5SBarry Smith 
1126c1154cd5SBarry Smith    Synopsis:
1127c1154cd5SBarry Smith    #include <petscmat.h>
1128c1154cd5SBarry Smith    PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1129c1154cd5SBarry Smith 
1130c1154cd5SBarry Smith    Not Collective
1131c1154cd5SBarry Smith 
1132c1154cd5SBarry Smith    Input Parameters:
1133c1154cd5SBarry Smith +  map   - the row mapping from local numbering to global numbering
1134c1154cd5SBarry Smith .  nrows - the number of rows indicated
1135c1154cd5SBarry Smith .  rows  - the indices of the rows (these values are mapped to the global values)
1136c1154cd5SBarry Smith .  cmap  - the column mapping from local to global numbering
1137c1154cd5SBarry Smith .  ncols - the number of columns in the matrix   (this value will be changed if duplicate columns are found)
1138c1154cd5SBarry Smith .  cols  - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed)
1139c1154cd5SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1140a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1141c1154cd5SBarry Smith 
11422ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1143c1154cd5SBarry Smith 
1144c1154cd5SBarry Smith    Notes:
11452ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11462ef1f0ffSBarry Smith    the use of this routine
1147c1154cd5SBarry Smith 
11482ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1149c1154cd5SBarry Smith 
11501cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1151db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1152c1154cd5SBarry Smith M*/
115394bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11549371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1155c1154cd5SBarry Smith 
1156c1154cd5SBarry Smith /*MC
1157d6e23781SBarry Smith    MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1158bd481603SBarry Smith    inserted using a local number of the rows and columns
1159bd481603SBarry Smith 
1160bd481603SBarry Smith    Synopsis:
1161aaa7dc30SBarry Smith    #include <petscmat.h>
1162d6e23781SBarry Smith    PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1163d6e23781SBarry Smith 
1164d6e23781SBarry Smith    Not Collective
1165d6e23781SBarry Smith 
1166d6e23781SBarry Smith    Input Parameters:
1167d6e23781SBarry Smith +  map   - the row mapping from local numbering to global numbering
1168d6e23781SBarry Smith .  nrows - the number of rows indicated
1169d6e23781SBarry Smith .  rows  - the indices of the rows
1170d6e23781SBarry Smith .  cmap  - the column mapping from local to global numbering
1171d6e23781SBarry Smith .  ncols - the number of columns in the matrix
1172d6e23781SBarry Smith .  cols  - the columns indicated
1173d6e23781SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1174a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1175d6e23781SBarry Smith 
11762ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1177d6e23781SBarry Smith 
1178d6e23781SBarry Smith    Notes:
11792ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11802ef1f0ffSBarry Smith    the use of this routine
1181d6e23781SBarry Smith 
11822ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1183d6e23781SBarry Smith 
11841cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1185db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`
1186d6e23781SBarry Smith M*/
118794bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11889371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1189d6e23781SBarry Smith 
1190d6e23781SBarry Smith /*MC
1191d6e23781SBarry Smith    MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1192d6e23781SBarry Smith    inserted using a local number of the rows and columns
1193d6e23781SBarry Smith 
1194d6e23781SBarry Smith    Synopsis:
1195d6e23781SBarry Smith    #include <petscmat.h>
1196d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1197bd481603SBarry Smith 
1198bd481603SBarry Smith    Not Collective
1199bd481603SBarry Smith 
1200bd481603SBarry Smith    Input Parameters:
1201bd481603SBarry Smith +  map   - the mapping between local numbering and global numbering
1202bd481603SBarry Smith .  nrows - the number of rows indicated
12031d73ed98SBarry Smith .  rows  - the indices of the rows
1204bd481603SBarry Smith .  ncols - the number of columns in the matrix
1205bd481603SBarry Smith .  cols  - the columns indicated
1206bd481603SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1207a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1208bd481603SBarry Smith 
12092ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1210bd481603SBarry Smith 
1211bd481603SBarry Smith    Notes:
12122ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12132ef1f0ffSBarry Smith    the use of this routine
1214bd481603SBarry Smith 
12152ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1216bd481603SBarry Smith 
12171cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`
1218db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1219bd481603SBarry Smith M*/
122094bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \
12219371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));)
1222e83a5d19SLisandro Dalcin 
1223bd481603SBarry Smith /*MC
1224bd481603SBarry Smith    MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1225bd481603SBarry Smith    inserted using a local number of the rows and columns
1226bd481603SBarry Smith 
1227bd481603SBarry Smith    Synopsis:
1228aaa7dc30SBarry Smith    #include <petscmat.h>
1229c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1230bd481603SBarry Smith 
1231bd481603SBarry Smith    Not Collective
1232bd481603SBarry Smith 
1233bd481603SBarry Smith    Input Parameters:
123464075487SBarry Smith +  row   - the row
1235bd481603SBarry Smith .  ncols - the number of columns in the matrix
1236a50f8bf6SHong Zhang -  cols  - the columns indicated
1237a50f8bf6SHong Zhang 
1238a50f8bf6SHong Zhang    Output Parameters:
1239a50f8bf6SHong Zhang +  dnz - the array that will be passed to the matrix preallocation routines
1240a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1241bd481603SBarry Smith 
12422ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1243bd481603SBarry Smith 
1244bd481603SBarry Smith    Notes:
12452ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12462ef1f0ffSBarry Smith    the use of this routine
1247bd481603SBarry Smith 
12482ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1249bd481603SBarry Smith 
1250af27ebaaSBarry Smith    This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin().
12511620fd73SBarry Smith 
12521cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1253db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1254bd481603SBarry Smith M*/
12559371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \
12569371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \
125764075487SBarry Smith     if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \
1258a6042fd4SStefano Zampini     else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12599371c9d4SSatish Balay   })
12607c922b88SBarry Smith 
1261bd481603SBarry Smith /*MC
1262d6e23781SBarry Smith    MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1263bd481603SBarry Smith    inserted using a local number of the rows and columns
1264bd481603SBarry Smith 
1265bd481603SBarry Smith    Synopsis:
1266aaa7dc30SBarry Smith    #include <petscmat.h>
1267d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1268bd481603SBarry Smith 
1269bd481603SBarry Smith    Not Collective
1270bd481603SBarry Smith 
1271bd481603SBarry Smith    Input Parameters:
1272bd481603SBarry Smith +  nrows - the number of rows indicated
12731d73ed98SBarry Smith .  rows  - the indices of the rows
1274bd481603SBarry Smith .  ncols - the number of columns in the matrix
1275bd481603SBarry Smith .  cols  - the columns indicated
1276bd481603SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1277a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1278bd481603SBarry Smith 
12792ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1280bd481603SBarry Smith 
1281bd481603SBarry Smith    Notes:
12822ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12832ef1f0ffSBarry Smith    the use of this routine
1284bd481603SBarry Smith 
12852ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1286bd481603SBarry Smith 
1287af27ebaaSBarry Smith    This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin().
12881620fd73SBarry Smith 
12891cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`,
1290db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1291bd481603SBarry Smith M*/
129294bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \
12939371c9d4SSatish Balay   PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \
1294d3d32019SBarry Smith     if (cols[__i] >= __end) onz[row - __rstart]++; \
1295a6042fd4SStefano Zampini     else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12969371c9d4SSatish Balay   })
1297d3d32019SBarry Smith 
1298bd481603SBarry Smith /*MC
1299a6042fd4SStefano Zampini    MatPreallocateLocation -  An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists
130016371a99SBarry Smith 
130116371a99SBarry Smith    Synopsis:
1302aaa7dc30SBarry Smith    #include <petscmat.h>
130316371a99SBarry Smith    PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz)
130416371a99SBarry Smith 
130516371a99SBarry Smith    Not Collective
130616371a99SBarry Smith 
130716371a99SBarry Smith    Input Parameters:
1308a2b725a8SWilliam Gropp +  A     - matrix
130916371a99SBarry Smith .  row   - row where values exist (must be local to this process)
131016371a99SBarry Smith .  ncols - number of columns
131116371a99SBarry Smith .  cols  - columns with nonzeros
131216371a99SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1313a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
131416371a99SBarry Smith 
13152ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
131616371a99SBarry Smith 
131716371a99SBarry Smith    Notes:
13182ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
13192ef1f0ffSBarry Smith    the use of this routine
132016371a99SBarry Smith 
13212ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
132216371a99SBarry Smith 
1323af27ebaaSBarry Smith    Developer Note:
1324af27ebaaSBarry Smith    This is a MACRO, not a function, because it uses a bunch of variables private to the MatPreallocation.... routines.
132516371a99SBarry Smith 
13261cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1327db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
132816371a99SBarry Smith M*/
1329d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz))
133016371a99SBarry Smith 
133116371a99SBarry Smith /*MC
1332d0609cedSBarry Smith    MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per
1333bd481603SBarry Smith    row in a matrix providing the data that one can use to correctly preallocate the matrix.
1334bd481603SBarry Smith 
1335bd481603SBarry Smith    Synopsis:
1336aaa7dc30SBarry Smith    #include <petscmat.h>
1337d0609cedSBarry Smith    PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz)
1338bd481603SBarry Smith 
1339d083f849SBarry Smith    Collective
1340bd481603SBarry Smith 
1341bd481603SBarry Smith    Input Parameters:
134216371a99SBarry Smith +  dnz - the array that was be passed to the matrix preallocation routines
1343a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1344bd481603SBarry Smith 
13452ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1346bd481603SBarry Smith 
1347bd481603SBarry Smith    Notes:
13482ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
13492ef1f0ffSBarry Smith    the use of this routine
1350d0609cedSBarry Smith 
13512ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1352bd481603SBarry Smith 
13532ef1f0ffSBarry Smith    Developer Note:
1354af27ebaaSBarry Smith    This is a MACRO, not a function, because it closes the { started in MatPreallocateBegin().
13551620fd73SBarry Smith 
13561cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1357db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1358bd481603SBarry Smith M*/
13599371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \
13609371c9d4SSatish Balay   PetscCall(PetscFree2(dnz, onz)); \
13619371c9d4SSatish Balay   } \
13629371c9d4SSatish Balay   while (0)
1363d0609cedSBarry Smith 
1364edd03b47SJacob Faibussowitsch #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateEnd()", ) MatPreallocateEnd(__VA_ARGS__)
13657c922b88SBarry Smith 
13667b80b807SBarry Smith /* Routines unique to particular data structures */
1367014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *);
1368698d4c6aSKris Buschelman 
1369014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *);
1370014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *);
1371698d4c6aSKris Buschelman 
1372014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]);
1373014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]);
1374014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1375014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1376014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1377014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool);
13787b80b807SBarry Smith 
1379a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4
1380a96a251dSBarry Smith 
1381014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1382014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1383014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]);
138419b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt);
1385273d9f13SBarry Smith 
1386014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1387014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1388014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1389014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1390014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1391014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1392014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1393014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]);
1394b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *);
1395252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *);
1396014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]);
1397014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]);
13989230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
13999230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
1400014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *);
1401273d9f13SBarry Smith 
140249a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *);
1403ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt);
1404edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatDenseSetLDA()", ) static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda)
1405d71ae5a4SJacob Faibussowitsch {
14069371c9d4SSatish Balay   return MatDenseSetLDA(A, lda);
14079371c9d4SSatish Balay }
1408014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *);
14091b807ce4Svictorle 
1410621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1411621e819fSSatish Balay 
1412014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat);
1413014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat);
14142e8a6d31SBarry Smith 
1415014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *);
14167cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *);
14177b80b807SBarry Smith /*
14187b80b807SBarry Smith   These routines are not usually accessed directly, rather solving is
141994b7f48cSBarry Smith   done through the KSP and PC interfaces.
14207b80b807SBarry Smith */
14217b80b807SBarry Smith 
142276bdecfbSBarry Smith /*J
14232ef1f0ffSBarry Smith    MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used
14242ef1f0ffSBarry Smith    to reduce fill in sparse factorizations.
1425d9274352SBarry Smith 
1426d9274352SBarry Smith    Level: beginner
1427d9274352SBarry Smith 
14282c7c0729SBarry Smith    Notes:
142916a05f60SBarry Smith    If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one
143016a05f60SBarry Smith    of its own.
14312c7c0729SBarry Smith 
14322ef1f0ffSBarry Smith    There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()`
14332ef1f0ffSBarry Smith 
14342ef1f0ffSBarry Smith    Developer Note:
14352ef1f0ffSBarry Smith    This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning`
14362ef1f0ffSBarry Smith 
14371cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`,
14382ef1f0ffSBarry Smith           `PCFactorSetOrderingType()`
143976bdecfbSBarry Smith J*/
144019fd82e9SBarry Smith typedef const char *MatOrderingType;
14412692d6eeSBarry Smith #define MATORDERINGNATURAL       "natural"
14422692d6eeSBarry Smith #define MATORDERINGND            "nd"
14432692d6eeSBarry Smith #define MATORDERING1WD           "1wd"
14442692d6eeSBarry Smith #define MATORDERINGRCM           "rcm"
14452692d6eeSBarry Smith #define MATORDERINGQMD           "qmd"
14462692d6eeSBarry Smith #define MATORDERINGROWLENGTH     "rowlength"
1447510184a7SJed Brown #define MATORDERINGWBM           "wbm"
1448fc1bef75SJed Brown #define MATORDERINGSPECTRAL      "spectral"
1449312e372aSBarry Smith #define MATORDERINGAMD           "amd"           /* only works if UMFPACK is installed with PETSc */
1450048412efSPablo Brubeck #define MATORDERINGMETISND       "metisnd"       /* only works if METIS is installed with PETSc */
14519bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */
14522c7c0729SBarry Smith #define MATORDERINGEXTERNAL      "external"      /* uses an ordering type internal to the factorization package */
1453b12f92e5SBarry Smith 
145419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrdering(Mat, MatOrderingType, IS *, IS *);
1455140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrderingList(PetscFunctionList *);
1456bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode    MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *));
1457140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList;
1458d4fbbf0eSBarry Smith 
1459013e2dc7SBarry Smith #include "petscmatcoarsen.h"
1460013e2dc7SBarry Smith 
1461014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS);
1462fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *);
1463a2ce50c7SBarry Smith 
14644ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *);
14654ac6704cSBarry Smith 
1466d91e6319SBarry Smith /*S
14672ef1f0ffSBarry Smith    MatFactorShiftType - Type of numeric shift used for factorizations
1468d90ac83dSHong Zhang 
14692ef1f0ffSBarry Smith    Values:
14702ef1f0ffSBarry Smith +  `MAT_SHIFT_NONE`              - do not shift the matrix diagonal entries
14712ef1f0ffSBarry Smith .  `MAT_SHIFT_NONZERO`           - shift the entries to be non-zero
14722ef1f0ffSBarry Smith .  `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite
14732ef1f0ffSBarry Smith -  `MAT_SHIFT_INBLOCKS`          - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ`
1474d90ac83dSHong Zhang 
14752ef1f0ffSBarry Smith    Level: intermediate
14762ef1f0ffSBarry Smith 
14771cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()`
1478d90ac83dSHong Zhang S*/
14799371c9d4SSatish Balay typedef enum {
14809371c9d4SSatish Balay   MAT_SHIFT_NONE,
14819371c9d4SSatish Balay   MAT_SHIFT_NONZERO,
14829371c9d4SSatish Balay   MAT_SHIFT_POSITIVE_DEFINITE,
14839371c9d4SSatish Balay   MAT_SHIFT_INBLOCKS
14849371c9d4SSatish Balay } MatFactorShiftType;
14856a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[];
14865e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[];
1487d90ac83dSHong Zhang 
1488d90ac83dSHong Zhang /*S
1489ec5066bdSBarry Smith     MatFactorError - indicates what type of error was generated in a matrix factorization
14909aa7eafdSHong Zhang 
14912ef1f0ffSBarry Smith     Values:
14922ef1f0ffSBarry Smith +   `MAT_FACTOR_NOERROR`           - there was no error during the factorization
14932ef1f0ffSBarry Smith .   `MAT_FACTOR_STRUCT_ZEROPIVOT`  - there was a missing entry in a diagonal location of the matrix
14942ef1f0ffSBarry Smith .   `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization
14952ef1f0ffSBarry Smith .   `MAT_FACTOR_OUTMEMORY`         - the factorization has run out of memory
14962ef1f0ffSBarry Smith -   `MAT_FACTOR_OTHER`             - some other error has occurred.
14979aa7eafdSHong Zhang 
14982ef1f0ffSBarry Smith     Level: intermediate
149900e125f8SBarry Smith 
15002ef1f0ffSBarry Smith     Note:
15012ef1f0ffSBarry Smith     When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason`
15022ef1f0ffSBarry Smith 
15031cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`,
15042ef1f0ffSBarry Smith           `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason`
15059aa7eafdSHong Zhang S*/
15069371c9d4SSatish Balay typedef enum {
15079371c9d4SSatish Balay   MAT_FACTOR_NOERROR,
15089371c9d4SSatish Balay   MAT_FACTOR_STRUCT_ZEROPIVOT,
15099371c9d4SSatish Balay   MAT_FACTOR_NUMERIC_ZEROPIVOT,
15109371c9d4SSatish Balay   MAT_FACTOR_OUTMEMORY,
15119371c9d4SSatish Balay   MAT_FACTOR_OTHER
15129371c9d4SSatish Balay } MatFactorError;
15139aa7eafdSHong Zhang 
151400e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *);
1515b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat);
15167b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *);
151700e125f8SBarry Smith 
15189aa7eafdSHong Zhang /*S
1519422a814eSBarry Smith    MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization
1520b00f7748SHong Zhang 
1521b00f7748SHong Zhang    Level: developer
1522b00f7748SHong Zhang 
15232ef1f0ffSBarry Smith    Note:
15242ef1f0ffSBarry Smith    You can use `MatFactorInfoInitialize()` to set default values.
1525b00f7748SHong Zhang 
15262ef1f0ffSBarry Smith    Fortran Note:
15272ef1f0ffSBarry Smith    The data is available in a double precision arrays of size `MAT_FACTORINFO_SIZE`
15282ef1f0ffSBarry Smith 
15291cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`,
15302ef1f0ffSBarry Smith           `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()`
1531b00f7748SHong Zhang S*/
1532b00f7748SHong Zhang typedef struct {
153315e8a5b3SHong Zhang   PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */
153485317021SBarry Smith   PetscReal usedt;
153515e8a5b3SHong Zhang   PetscReal dt;            /* drop tolerance */
1536b00f7748SHong Zhang   PetscReal dtcol;         /* tolerance for pivoting */
153715e8a5b3SHong Zhang   PetscReal dtcount;       /* maximum nonzeros to be allowed per row */
153867e28bfeSBarry Smith   PetscReal fill;          /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */
1539348344bbSBarry Smith   PetscReal levels;        /* ICC/ILU(levels) */
1540bcd9e38bSBarry Smith   PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0
1541bcd9e38bSBarry Smith                                    factorization may be faster if do not pivot */
154215e8a5b3SHong Zhang   PetscReal zeropivot;     /* pivot is called zero if less than this */
1543f4db908eSBarry Smith   PetscReal shifttype;     /* type of shift added to matrix factor to prevent zero pivots */
1544f4db908eSBarry Smith   PetscReal shiftamount;   /* how large the shift is */
154515e8a5b3SHong Zhang } MatFactorInfo;
1546ffa6d0a5SLois Curfman McInnes 
1547014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *);
15489a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *);
15499a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15509a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *);
15519a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *);
15529a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *);
15539a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15549a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15559a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15569a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *);
15579a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *);
15583f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *);
15593f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15603f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *);
1561014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *);
1562014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec);
1563014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec);
1564014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec);
1565014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec);
1566014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec);
1567014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec);
1568014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs);
15697c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat);
15707c2f51b8SStefano Zampini 
15719371c9d4SSatish Balay typedef enum {
15729371c9d4SSatish Balay   MAT_FACTOR_SCHUR_UNFACTORED,
15739371c9d4SSatish Balay   MAT_FACTOR_SCHUR_FACTORED,
15749371c9d4SSatish Balay   MAT_FACTOR_SCHUR_INVERTED
15759371c9d4SSatish Balay } MatFactorSchurStatus;
15768e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS);
15777c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15787c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus);
15795a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat);
15807c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15815a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec);
15825a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec);
15836dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat);
1584bb5a7306SBarry Smith 
15858a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat);
1586d91e6319SBarry Smith /*E
1587d91e6319SBarry Smith    MatSORType - What type of (S)SOR to perform
1588bb1eb677SSatish Balay 
15892ef1f0ffSBarry Smith    Values:
15902ef1f0ffSBarry Smith +  `SOR_FORWARD_SWEEP`         - do a sweep from the first row of the matrix to the last
15912ef1f0ffSBarry Smith .  `SOR_BACKWARD_SWEEP`        - do a sweep from the last row to the first
15922ef1f0ffSBarry Smith .  `SOR_SYMMETRIC_SWEEP`       - do a sweep from the first row to the last and then back to the first
1593af27ebaaSBarry Smith .  `SOR_LOCAL_FORWARD_SWEEP`   - each MPI process does its own forward sweep with no communication
1594af27ebaaSBarry Smith .  `SOR_LOCAL_BACKWARD_SWEEP`  - each MPI process does its own backward sweep with no communication
1595af27ebaaSBarry Smith .  `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI process does its own symmetric sweep with no communication
15962ef1f0ffSBarry Smith .  `SOR_ZERO_INITIAL_GUESS`    - indicates the initial solution is zero so the sweep can avoid unneeded computation
15972ef1f0ffSBarry Smith .  `SOR_EISENSTAT`             - apply the Eisentat application of SOR, see `PCEISENSTAT`
15982ef1f0ffSBarry Smith .  `SOR_APPLY_UPPER`           - multiply by the upper triangular portion of the matrix
15992ef1f0ffSBarry Smith -  `SOR_APPLY_LOWER`           - multiply by the lower triangular portion of the matrix
16002ef1f0ffSBarry Smith 
1601d91e6319SBarry Smith    Level: beginner
1602d91e6319SBarry Smith 
16032ef1f0ffSBarry Smith    Note:
16042ef1f0ffSBarry Smith    These may be bitwise ORd together
1605d9274352SBarry Smith 
16062ef1f0ffSBarry Smith    Developer Note:
16072ef1f0ffSBarry Smith    Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below
1608d91e6319SBarry Smith 
16091cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSOR()`
1610d91e6319SBarry Smith E*/
16119371c9d4SSatish Balay typedef enum {
16129371c9d4SSatish Balay   SOR_FORWARD_SWEEP         = 1,
16139371c9d4SSatish Balay   SOR_BACKWARD_SWEEP        = 2,
16149371c9d4SSatish Balay   SOR_SYMMETRIC_SWEEP       = 3,
16159371c9d4SSatish Balay   SOR_LOCAL_FORWARD_SWEEP   = 4,
16169371c9d4SSatish Balay   SOR_LOCAL_BACKWARD_SWEEP  = 8,
16179371c9d4SSatish Balay   SOR_LOCAL_SYMMETRIC_SWEEP = 12,
16189371c9d4SSatish Balay   SOR_ZERO_INITIAL_GUESS    = 16,
16199371c9d4SSatish Balay   SOR_EISENSTAT             = 32,
16209371c9d4SSatish Balay   SOR_APPLY_UPPER           = 64,
16219371c9d4SSatish Balay   SOR_APPLY_LOWER           = 128
16229371c9d4SSatish Balay } MatSORType;
1623014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
16248ed539a5SBarry Smith 
16257086a01eSPeter Brune /*S
16267086a01eSPeter Brune    MatColoring - Object for managing the coloring of matrices.
16277086a01eSPeter Brune 
16287086a01eSPeter Brune    Level: beginner
16297086a01eSPeter Brune 
1630ec5066bdSBarry Smith    Notes:
163187497f52SBarry Smith    Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
163287497f52SBarry Smith    matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors).
1633ec5066bdSBarry Smith 
163487497f52SBarry Smith    Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This
16352ef1f0ffSBarry Smith    same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices.
1636ec5066bdSBarry Smith 
16371cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`,
16382ef1f0ffSBarry Smith           `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`,
16392ef1f0ffSBarry Smith           `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen`
16407086a01eSPeter Brune S*/
1641d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring;
1642d4db15c4SBarry Smith 
1643d4db15c4SBarry Smith /*J
1644d4db15c4SBarry Smith    MatColoringType - String with the name of a PETSc matrix coloring
1645d9274352SBarry Smith 
1646d9274352SBarry Smith    Level: beginner
1647d9274352SBarry Smith 
16481cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring`
164976bdecfbSBarry Smith J*/
165019fd82e9SBarry Smith typedef const char *MatColoringType;
16515567d71aSPeter Brune #define MATCOLORINGJP      "jp"
1652b9acb617SPeter Brune #define MATCOLORINGPOWER   "power"
16532692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural"
16542692d6eeSBarry Smith #define MATCOLORINGSL      "sl"
16552692d6eeSBarry Smith #define MATCOLORINGLF      "lf"
16562692d6eeSBarry Smith #define MATCOLORINGID      "id"
16578121bdceSPeter Brune #define MATCOLORINGGREEDY  "greedy"
1658b12f92e5SBarry Smith 
16598ac6da0aSPeter Brune /*E
16602ef1f0ffSBarry Smith    MatColoringWeightType - Type of weight scheme used for the coloring algorithm
16618ac6da0aSPeter Brune 
16622ef1f0ffSBarry Smith    Values:
166387497f52SBarry Smith +  `MAT_COLORING_RANDOM`  - Random weights
166487497f52SBarry Smith .  `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering.
166587497f52SBarry Smith -  `MAT_COLORING_LF`      - Last-first weighting.
16668ac6da0aSPeter Brune 
16678ac6da0aSPeter Brune     Level: intermediate
16688ac6da0aSPeter Brune 
16691cc06b55SBarry Smith .seealso: [](ch_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()`
16708ac6da0aSPeter Brune E*/
16719371c9d4SSatish Balay typedef enum {
16729371c9d4SSatish Balay   MAT_COLORING_WEIGHT_RANDOM,
16739371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LEXICAL,
16749371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LF,
16759371c9d4SSatish Balay   MAT_COLORING_WEIGHT_SL
16769371c9d4SSatish Balay } MatColoringWeightType;
16778ac6da0aSPeter Brune 
1678335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *);
1679d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *);
1680335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *);
1681335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer);
1682335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType);
1683335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring);
1684335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt);
1685335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *);
1686335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt);
1687335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *);
1688335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *);
1689335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring));
1690014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *);
16918ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType);
1692c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *);
16938ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm);
1694bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring);
1695edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatColoringTest()", ) static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring)
1696d71ae5a4SJacob Faibussowitsch {
16979371c9d4SSatish Balay   return MatColoringTest(matcoloring, iscoloring);
16989371c9d4SSatish Balay }
1699bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring);
1700639f9d9dSBarry Smith 
1701d9274352SBarry Smith /*S
170287497f52SBarry Smith    MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring
1703639f9d9dSBarry Smith 
1704d9274352SBarry Smith    Level: beginner
1705d9274352SBarry Smith 
1706ec5066bdSBarry Smith    Notes:
170787497f52SBarry Smith    This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()`
1708ec5066bdSBarry Smith 
17092ef1f0ffSBarry Smith    The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object
17102ef1f0ffSBarry Smith 
17111cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()`
1712d9274352SBarry Smith S*/
1713e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring;
1714639f9d9dSBarry Smith 
1715014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *);
1716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *);
1717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer);
1718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *);
1719014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **);
1720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal);
1721014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring);
1722d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *);
1723014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec);
1724edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]);
1725f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring);
1726f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt);
1727bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *);
1728b1683b59SHong Zhang 
1729b1683b59SHong Zhang /*S
1730af27ebaaSBarry Smith    MatTransposeColoring - Object for computing a sparse matrix product $C = A*B^T$ via coloring
1731b1683b59SHong Zhang 
17322ef1f0ffSBarry Smith    Level: developer
1733b1683b59SHong Zhang 
17341cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()`
1735b1683b59SHong Zhang S*/
1736b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring;
1737b1683b59SHong Zhang 
1738014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *);
1739014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat);
1740014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat);
1741014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *);
1742b1683b59SHong Zhang 
1743d9274352SBarry Smith /*S
1744d9274352SBarry Smith    MatPartitioning - Object for managing the partitioning of a matrix or graph
1745d9274352SBarry Smith 
1746d9274352SBarry Smith    Level: beginner
1747d9274352SBarry Smith 
174887497f52SBarry Smith    Note:
174987497f52SBarry Smith    There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations
175087497f52SBarry Smith    via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`)
1751ec5066bdSBarry Smith 
1752b5e6e808SPierre Jolivet    Developer Note:
17532ef1f0ffSBarry Smith    It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed
1754ec5066bdSBarry Smith 
17551cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`,
17562ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
1757d9274352SBarry Smith S*/
175891e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning;
1759d9274352SBarry Smith 
176076bdecfbSBarry Smith /*J
17618f6c3df8SBarry Smith     MatPartitioningType - String with the name of a PETSc matrix partitioning
1762d9274352SBarry Smith 
1763d9274352SBarry Smith    Level: beginner
17640d04baf8SBarry Smith dm
17651cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`,
17662ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
176776bdecfbSBarry Smith J*/
176819fd82e9SBarry Smith typedef const char *MatPartitioningType;
17692692d6eeSBarry Smith #define MATPARTITIONINGCURRENT  "current"
1770aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE  "average"
17712692d6eeSBarry Smith #define MATPARTITIONINGSQUARE   "square"
17722692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis"
17732692d6eeSBarry Smith #define MATPARTITIONINGCHACO    "chaco"
17742692d6eeSBarry Smith #define MATPARTITIONINGPARTY    "party"
177550d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch"
177688d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch"
177771306c60Sjroman 
1778014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *);
177919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType);
1780014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt);
1781014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat);
1782252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt);
1783014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]);
1784014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]);
1785ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool);
1786ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *);
1787014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *);
1788fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *);
1789668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS);
1790f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *);
1791014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *);
1792bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning));
1793014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer);
1794fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]);
1795014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning);
179619fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *);
1797ca161407SBarry Smith 
179827538973SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part);
1799014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning);
1800014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *);
18010752156aSBarry Smith 
18029371c9d4SSatish Balay typedef enum {
18039371c9d4SSatish Balay   MP_CHACO_MULTILEVEL = 1,
18049371c9d4SSatish Balay   MP_CHACO_SPECTRAL   = 2,
18059371c9d4SSatish Balay   MP_CHACO_LINEAR     = 4,
18069371c9d4SSatish Balay   MP_CHACO_RANDOM     = 5,
18079371c9d4SSatish Balay   MP_CHACO_SCATTERED  = 6
18089371c9d4SSatish Balay } MPChacoGlobalType;
18096a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[];
18109371c9d4SSatish Balay typedef enum {
18119371c9d4SSatish Balay   MP_CHACO_KERNIGHAN = 1,
18129371c9d4SSatish Balay   MP_CHACO_NONE      = 2
18139371c9d4SSatish Balay } MPChacoLocalType;
18146a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[];
18159371c9d4SSatish Balay typedef enum {
18169371c9d4SSatish Balay   MP_CHACO_LANCZOS = 0,
18179371c9d4SSatish Balay   MP_CHACO_RQI     = 1
18189371c9d4SSatish Balay } MPChacoEigenType;
18196a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[];
1820b6956c12SJose Roman 
1821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType);
1822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *);
1823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType);
1824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *);
1825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal);
1826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType);
1827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *);
1828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal);
1829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *);
1830014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt);
1831014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *);
183271306c60Sjroman 
183371306c60Sjroman #define MP_PARTY_OPT "opt"
183471306c60Sjroman #define MP_PARTY_LIN "lin"
183571306c60Sjroman #define MP_PARTY_SCA "sca"
183671306c60Sjroman #define MP_PARTY_RAN "ran"
183771306c60Sjroman #define MP_PARTY_GBF "gbf"
183871306c60Sjroman #define MP_PARTY_GCF "gcf"
183971306c60Sjroman #define MP_PARTY_BUB "bub"
184071306c60Sjroman #define MP_PARTY_DEF "def"
1841014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *);
184271306c60Sjroman #define MP_PARTY_HELPFUL_SETS  "hs"
184371306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl"
184471306c60Sjroman #define MP_PARTY_NONE          "no"
1845014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *);
1846014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal);
1847014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool);
1848014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool);
184971306c60Sjroman 
18509371c9d4SSatish Balay typedef enum {
18519371c9d4SSatish Balay   MP_PTSCOTCH_DEFAULT,
18529371c9d4SSatish Balay   MP_PTSCOTCH_QUALITY,
18539371c9d4SSatish Balay   MP_PTSCOTCH_SPEED,
18549371c9d4SSatish Balay   MP_PTSCOTCH_BALANCE,
18559371c9d4SSatish Balay   MP_PTSCOTCH_SAFETY,
18569371c9d4SSatish Balay   MP_PTSCOTCH_SCALABILITY
18579371c9d4SSatish Balay } MPPTScotchStrategyType;
18586a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[];
1859e0f1cffaSJose Roman 
1860014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal);
1861014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *);
1862014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType);
1863014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *);
186471306c60Sjroman 
1865b43b03e9SMark F. Adams /*
18666294fa2bSFande Kong  * hierarchical partitioning
18676294fa2bSFande Kong  */
18684e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *);
18694e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *);
18704e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt);
18714e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt);
18726294fa2bSFande Kong 
1873014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *);
1874591294e4SBarry Smith 
18750752156aSBarry Smith /*
1876c786d857SStefano Zampini     If you add entries here you must also add them to src/mat/f90-mod/petscmat.h
1877c786d857SStefano Zampini     If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx
1878d4fbbf0eSBarry Smith */
18799371c9d4SSatish Balay typedef enum {
18809371c9d4SSatish Balay   MATOP_SET_VALUES               = 0,
18811c1c02c0SLois Curfman McInnes   MATOP_GET_ROW                  = 1,
18821c1c02c0SLois Curfman McInnes   MATOP_RESTORE_ROW              = 2,
18831c1c02c0SLois Curfman McInnes   MATOP_MULT                     = 3,
18841c1c02c0SLois Curfman McInnes   MATOP_MULT_ADD                 = 4,
18857c922b88SBarry Smith   MATOP_MULT_TRANSPOSE           = 5,
18867c922b88SBarry Smith   MATOP_MULT_TRANSPOSE_ADD       = 6,
18871c1c02c0SLois Curfman McInnes   MATOP_SOLVE                    = 7,
18881c1c02c0SLois Curfman McInnes   MATOP_SOLVE_ADD                = 8,
18897c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE          = 9,
18907c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE_ADD      = 10,
18911c1c02c0SLois Curfman McInnes   MATOP_LUFACTOR                 = 11,
18921c1c02c0SLois Curfman McInnes   MATOP_CHOLESKYFACTOR           = 12,
1893a714c06dSBarry Smith   MATOP_SOR                      = 13,
18941c1c02c0SLois Curfman McInnes   MATOP_TRANSPOSE                = 14,
18951c1c02c0SLois Curfman McInnes   MATOP_GETINFO                  = 15,
18961c1c02c0SLois Curfman McInnes   MATOP_EQUAL                    = 16,
18971c1c02c0SLois Curfman McInnes   MATOP_GET_DIAGONAL             = 17,
18981c1c02c0SLois Curfman McInnes   MATOP_DIAGONAL_SCALE           = 18,
18991c1c02c0SLois Curfman McInnes   MATOP_NORM                     = 19,
19001c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_BEGIN           = 20,
19011c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_END             = 21,
1902d519adbfSMatthew Knepley   MATOP_SET_OPTION               = 22,
1903d519adbfSMatthew Knepley   MATOP_ZERO_ENTRIES             = 23,
1904d519adbfSMatthew Knepley   MATOP_ZERO_ROWS                = 24,
1905d519adbfSMatthew Knepley   MATOP_LUFACTOR_SYMBOLIC        = 25,
1906d519adbfSMatthew Knepley   MATOP_LUFACTOR_NUMERIC         = 26,
1907d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27,
1908d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_NUMERIC  = 28,
1909e5f2d425SStefano Zampini   MATOP_SETUP                    = 29,
1910d519adbfSMatthew Knepley   MATOP_ILUFACTOR_SYMBOLIC       = 30,
1911d519adbfSMatthew Knepley   MATOP_ICCFACTOR_SYMBOLIC       = 31,
1912a5b7ff6bSBarry Smith   MATOP_GET_DIAGONAL_BLOCK       = 32,
1913e5f2d425SStefano Zampini   MATOP_SET_INF                  = 33,
1914d519adbfSMatthew Knepley   MATOP_DUPLICATE                = 34,
1915d519adbfSMatthew Knepley   MATOP_FORWARD_SOLVE            = 35,
1916d519adbfSMatthew Knepley   MATOP_BACKWARD_SOLVE           = 36,
1917d519adbfSMatthew Knepley   MATOP_ILUFACTOR                = 37,
1918d519adbfSMatthew Knepley   MATOP_ICCFACTOR                = 38,
1919d519adbfSMatthew Knepley   MATOP_AXPY                     = 39,
19207dae84e0SHong Zhang   MATOP_CREATE_SUBMATRICES       = 40,
1921d519adbfSMatthew Knepley   MATOP_INCREASE_OVERLAP         = 41,
1922d519adbfSMatthew Knepley   MATOP_GET_VALUES               = 42,
1923d519adbfSMatthew Knepley   MATOP_COPY                     = 43,
1924d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX              = 44,
1925d519adbfSMatthew Knepley   MATOP_SCALE                    = 45,
1926d519adbfSMatthew Knepley   MATOP_SHIFT                    = 46,
192735153367SBarry Smith   MATOP_DIAGONAL_SET             = 47,
19289d39f69dSJed Brown   MATOP_ZERO_ROWS_COLUMNS        = 48,
19299d39f69dSJed Brown   MATOP_SET_RANDOM               = 49,
1930d519adbfSMatthew Knepley   MATOP_GET_ROW_IJ               = 50,
1931d519adbfSMatthew Knepley   MATOP_RESTORE_ROW_IJ           = 51,
1932d519adbfSMatthew Knepley   MATOP_GET_COLUMN_IJ            = 52,
1933d519adbfSMatthew Knepley   MATOP_RESTORE_COLUMN_IJ        = 53,
1934d519adbfSMatthew Knepley   MATOP_FDCOLORING_CREATE        = 54,
1935d519adbfSMatthew Knepley   MATOP_COLORING_PATCH           = 55,
1936d519adbfSMatthew Knepley   MATOP_SET_UNFACTORED           = 56,
1937d519adbfSMatthew Knepley   MATOP_PERMUTE                  = 57,
1938d519adbfSMatthew Knepley   MATOP_SET_VALUES_BLOCKED       = 58,
19397dae84e0SHong Zhang   MATOP_CREATE_SUBMATRIX         = 59,
1940d519adbfSMatthew Knepley   MATOP_DESTROY                  = 60,
1941d519adbfSMatthew Knepley   MATOP_VIEW                     = 61,
1942d519adbfSMatthew Knepley   MATOP_CONVERT_FROM             = 62,
1943e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_63=63 */
19447bab7c10SHong Zhang   MATOP_MATMAT_MULT_SYMBOLIC    = 64,
19457bab7c10SHong Zhang   MATOP_MATMAT_MULT_NUMERIC     = 65,
1946d519adbfSMatthew Knepley   MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66,
1947d519adbfSMatthew Knepley   MATOP_SET_VALUES_LOCAL        = 67,
1948d519adbfSMatthew Knepley   MATOP_ZERO_ROWS_LOCAL         = 68,
1949d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX_ABS         = 69,
1950d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN_ABS         = 70,
1951d519adbfSMatthew Knepley   MATOP_CONVERT                 = 71,
1952e5f2d425SStefano Zampini   MATOP_HAS_OPERATION           = 72,
19539d39f69dSJed Brown   /* MATOP_PLACEHOLDER_73=73, */
1954d519adbfSMatthew Knepley   MATOP_SET_VALUES_ADIFOR = 74,
1955d519adbfSMatthew Knepley   MATOP_FD_COLORING_APPLY = 75,
1956d519adbfSMatthew Knepley   MATOP_SET_FROM_OPTIONS  = 76,
1957e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_77=77, */
1958e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_78=78, */
19599d39f69dSJed Brown   MATOP_FIND_ZERO_DIAGONALS       = 79,
1960d519adbfSMatthew Knepley   MATOP_MULT_MULTIPLE             = 80,
1961d519adbfSMatthew Knepley   MATOP_SOLVE_MULTIPLE            = 81,
1962d519adbfSMatthew Knepley   MATOP_GET_INERTIA               = 82,
1963d519adbfSMatthew Knepley   MATOP_LOAD                      = 83,
1964d519adbfSMatthew Knepley   MATOP_IS_SYMMETRIC              = 84,
1965d519adbfSMatthew Knepley   MATOP_IS_HERMITIAN              = 85,
1966d519adbfSMatthew Knepley   MATOP_IS_STRUCTURALLY_SYMMETRIC = 86,
1967820469bcSHong Zhang   MATOP_SET_VALUES_BLOCKEDLOCAL   = 87,
1968b41ce5d5SBarry Smith   MATOP_CREATE_VECS               = 88,
1969e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_89=89, */
1970d519adbfSMatthew Knepley   MATOP_MAT_MULT_SYMBOLIC = 90,
1971d519adbfSMatthew Knepley   MATOP_MAT_MULT_NUMERIC  = 91,
1972e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_92=92, */
1973d519adbfSMatthew Knepley   MATOP_PTAP_SYMBOLIC = 93,
1974d519adbfSMatthew Knepley   MATOP_PTAP_NUMERIC  = 94,
1975e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_95=95, */
1976bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96,
1977bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_NUMER = 97,
1978e5f2d425SStefano Zampini   MATOP_BIND_TO_CPU              = 98,
19797a3c3d58SStefano Zampini   MATOP_PRODUCTSETFROMOPTIONS    = 99,
19807a3c3d58SStefano Zampini   MATOP_PRODUCTSYMBOLIC          = 100,
19817a3c3d58SStefano Zampini   MATOP_PRODUCTNUMERIC           = 101,
1982d519adbfSMatthew Knepley   MATOP_CONJUGATE                = 102,
1983e5f2d425SStefano Zampini   MATOP_VIEW_NATIVE              = 103,
1984d519adbfSMatthew Knepley   MATOP_SET_VALUES_ROW           = 104,
1985d519adbfSMatthew Knepley   MATOP_REAL_PART                = 105,
1986bda6c4cbSBarry Smith   MATOP_IMAGINARY_PART           = 106,
1987bda6c4cbSBarry Smith   MATOP_GET_ROW_UPPER_TRIANGULAR = 107,
1988bda6c4cbSBarry Smith   MATOP_RESTORE_ROW_UPPER_TRIANG = 108,
1989bda6c4cbSBarry Smith   MATOP_MAT_SOLVE                = 109,
199029eadf9eSStefano Zampini   MATOP_MAT_SOLVE_TRANSPOSE      = 110,
1991d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN              = 111,
19920e8d04f7SBarry Smith   MATOP_GET_COLUMN_VECTOR        = 112,
1993d519adbfSMatthew Knepley   MATOP_MISSING_DIAGONAL         = 113,
19940e8d04f7SBarry Smith   MATOP_GET_SEQ_NONZERO_STRUCTUR = 114,
199589c6957cSBarry Smith   MATOP_CREATE                   = 115,
199689c6957cSBarry Smith   MATOP_GET_GHOSTS               = 116,
19970e8d04f7SBarry Smith   MATOP_GET_LOCAL_SUB_MATRIX     = 117,
19980e8d04f7SBarry Smith   MATOP_RESTORE_LOCALSUB_MATRIX  = 118,
1999eeffb40dSHong Zhang   MATOP_MULT_DIAGONAL_BLOCK      = 119,
20000e8d04f7SBarry Smith   MATOP_HERMITIAN_TRANSPOSE      = 120,
20010e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANSPOSE = 121,
20020e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANS_ADD = 122,
20030e8d04f7SBarry Smith   MATOP_GET_MULTI_PROC_BLOCK     = 123,
20049d39f69dSJed Brown   MATOP_FIND_NONZERO_ROWS        = 124,
20050e8d04f7SBarry Smith   MATOP_GET_COLUMN_NORMS         = 125,
20069d39f69dSJed Brown   MATOP_INVERT_BLOCK_DIAGONAL    = 126,
2007e5f2d425SStefano Zampini   MATOP_INVERT_VBLOCK_DIAGONAL   = 127,
2008b41ce5d5SBarry Smith   MATOP_CREATE_SUB_MATRICES_MPI  = 128,
20092b8ad9a3SHong Zhang   MATOP_SET_VALUES_BATCH         = 129,
2010e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_130=130, */
20110e8d04f7SBarry Smith   MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131,
2012e9b602ebSSatish Balay   MATOP_TRANSPOSE_MAT_MULT_NUMER = 132,
20130e8d04f7SBarry Smith   MATOP_TRANSPOSE_COLORING_CREAT = 133,
20140e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_SPT = 134,
20150e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_DEN = 135,
2016e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_136=136, */
20170e8d04f7SBarry Smith   MATOP_RART_SYMBOLIC         = 137,
20180e8d04f7SBarry Smith   MATOP_RART_NUMERIC          = 138,
2019e09a3074SHong Zhang   MATOP_SET_BLOCK_SIZES       = 139,
2020f9426fe0SMark Adams   MATOP_AYPX                  = 140,
20211919a2e2SJed Brown   MATOP_RESIDUAL              = 141,
20229c8f2541SHong Zhang   MATOP_FDCOLORING_SETUP      = 142,
2023e5f2d425SStefano Zampini   MATOP_FIND_OFFBLOCK_ENTRIES = 143,
20242d033e1fSHong Zhang   MATOP_MPICONCATENATESEQ     = 144,
2025bb01b7b0SPatrick Sanan   MATOP_DESTROYSUBMATRICES    = 145,
20264ac41c6fSJose E. Roman   MATOP_MAT_TRANSPOSE_SOLVE   = 146,
20274ac41c6fSJose E. Roman   MATOP_GET_VALUES_LOCAL      = 147,
20284ac41c6fSJose E. Roman   MATOP_CREATE_GRAPH          = 148,
20294ac41c6fSJose E. Roman   /* MATOP_PLACEHOLDER_149=149, */
20304ac41c6fSJose E. Roman   MATOP_TRANSPOSE_SYMBOLIC = 150,
20314ac41c6fSJose E. Roman   MATOP_ELIMINATE_ZEROS    = 151,
2032*2b938fe4SJose E. Roman   MATOP_GET_ROW_SUM_ABS    = 152,
2033*2b938fe4SJose E. Roman   MATOP_GET_FACTOR         = 153
2034fae171e0SBarry Smith } MatOperation;
20350c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void));
2036976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void));
2037976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *);
203894342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *);
2039edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatProductClear()", ) static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A)
2040d71ae5a4SJacob Faibussowitsch {
20419371c9d4SSatish Balay   return MatProductClear(A);
20429371c9d4SSatish Balay }
2043014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void));
2044014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void));
2045014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *);
2046800f99ffSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *));
2047db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType);
2048f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
2049f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
20500c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat);
2051b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType);
2052b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *);
2053112a2221SBarry Smith 
205490ace30eSBarry Smith /*
205590ace30eSBarry Smith    Codes for matrices stored on disk. By default they are
205690ace30eSBarry Smith    stored in a universal format. By changing the format with
20576a9046bcSBarry Smith    PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will
205890ace30eSBarry Smith    be stored in a way natural for the matrix, for example dense matrices
205990ace30eSBarry Smith    would be stored as dense. Matrices stored this way may only be
2060f4403165SShri Abhyankar    read into matrices of the same type.
206190ace30eSBarry Smith */
206290ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1
206390ace30eSBarry Smith 
2064014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal);
206575d48cdbSStefano Zampini 
20668546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType);
206775d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
20684f58015eSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetAllowRepeated(Mat, PetscBool);
20694f58015eSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetAllowRepeated(Mat, PetscBool *);
207075d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool);
2071f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool);
2072014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *);
20733b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *);
2074014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat);
2075e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
20761f4e1ec7SBarry Smith 
2077d9274352SBarry Smith /*S
2078d9274352SBarry Smith    MatNullSpace - Object that removes a null space from a vector, i.e.
2079cb6b9846SMatthew Knepley                   orthogonalizes the vector to a subspace
2080d9274352SBarry Smith 
2081f7a9e4ceSBarry Smith    Level: advanced
2082d9274352SBarry Smith 
20831cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()`
2084d9274352SBarry Smith S*/
208574637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace;
2086d9274352SBarry Smith 
2087014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *);
2088014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *);
2089014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *);
2090d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec);
2091014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *);
20925fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *);
20935fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace);
2094014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace);
2095014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace);
2096014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *);
20974849c82aSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNullSpaces(PetscInt, Mat[], MatNullSpace *[]);
20984849c82aSBarry Smith PETSC_EXTERN PetscErrorCode MatRestoreNullSpaces(PetscInt, Mat[], MatNullSpace *[]);
2099014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *);
2100014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer);
2101014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **);
2102014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *);
210374637425SBarry Smith 
2104014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS);
2105014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal);
2106014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *);
21073f1d51d7SBarry Smith 
2108014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *);
2109014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *);
2110014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *);
2111c4f061fbSSatish Balay 
21120bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *);
21130bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *);
21140bacdadaSStefano Zampini 
2115edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperator()", ) static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B)
2116d71ae5a4SJacob Faibussowitsch {
2117f22e26b7SPierre Jolivet   return MatComputeOperator(A, PETSC_NULLPTR, B);
21189371c9d4SSatish Balay }
2119edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperatorTranspose()", ) static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B)
2120d71ae5a4SJacob Faibussowitsch {
2121f22e26b7SPierre Jolivet   return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B);
21229371c9d4SSatish Balay }
2123b0a32e0cSBarry Smith 
212449bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *);
212549bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *);
2126a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **);
2127a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2128a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **);
2129a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **);
2130a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **);
2131a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2132a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **);
2133a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **);
2134dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat);
2135dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]);
2136dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]);
2137910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *);
213849bd79ccSDebojyoti Ghosh 
2139014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec);
214004f1ad80SBarry Smith 
21414bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDInitializePackage(void);
21424bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDFinalizePackage(void);
21434bf303faSJacob Faibussowitsch 
2144014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2145014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec);
2146014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *);
2147014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *));
2148014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec));
2149014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt);
2150014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat);
2151014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal);
2152014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt);
2153014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *);
2154014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]);
2155014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *);
2156014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *);
2157e884886fSBarry Smith 
21586370053bSBarry Smith /*S
21596370053bSBarry Smith     MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free
21606370053bSBarry Smith               Jacobian vector products
2161e884886fSBarry Smith 
21622ef1f0ffSBarry Smith     Level: developer
21632ef1f0ffSBarry Smith 
216495452b02SPatrick Sanan     Notes:
216587497f52SBarry Smith     `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure
21666370053bSBarry Smith 
21672ef1f0ffSBarry Smith      MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure
21686370053bSBarry Smith 
21692ef1f0ffSBarry Smith     This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator`
21706370053bSBarry Smith 
21711cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`,
21722ef1f0ffSBarry Smith           `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator`
21736370053bSBarry Smith S*/
2174e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD;
2175e884886fSBarry Smith 
217676bdecfbSBarry Smith /*J
21772ef1f0ffSBarry Smith    MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function
2178e884886fSBarry Smith 
217916a05f60SBarry Smith    Values:
2180af27ebaaSBarry Smith +   `MATMFFD_DS` - an algorithm described by Dennis and Schnabel {cite}`dennis:83`
2181af27ebaaSBarry Smith -   `MATMFFD_WP` - the Walker-Pernice {cite}`pw98` strategy.
218216a05f60SBarry Smith 
2183e884886fSBarry Smith    Level: beginner
2184e884886fSBarry Smith 
21851cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()`
218676bdecfbSBarry Smith J*/
218719fd82e9SBarry Smith typedef const char *MatMFFDType;
2188e884886fSBarry Smith #define MATMFFD_DS "ds"
2189e884886fSBarry Smith #define MATMFFD_WP "wp"
2190e884886fSBarry Smith 
219119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType);
2192bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD));
2193e884886fSBarry Smith 
2194014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal);
2195014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool);
2196e884886fSBarry Smith 
219761ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType);
219861ab5df0SBarry Smith 
2199014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *);
2200014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *);
22017dbadf16SMatthew Knepley 
220253022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS
22038434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscScalar(MatH2OpusKernelFn)(PetscInt, PetscReal[], PetscReal[], void *);
22048434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatH2OpusKernelFn *MatH2OpusKernel;
2205659ebe53SBarry Smith 
22068434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernelFn *, void *, PetscReal, PetscInt, PetscInt, Mat *);
220753022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *);
220853022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal);
220953022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat);
221053022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal);
221153022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool);
221253022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *);
221353022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *);
221453022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *);
2215300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar);
2216a0d2e7d8SStefano Zampini #endif
2217a0d2e7d8SStefano Zampini 
2218c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL
22198434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode(MatHtoolKernelFn)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *);
22208434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatHtoolKernelFn *MatHtoolKernel;
2221659ebe53SBarry Smith 
22228434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernelFn *, void *, Mat *);
22238434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernelFn *, void *);
222498e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *);
222598e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *);
222698e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool);
22272ef1f0ffSBarry Smith 
2228c7a4214aSPierre Jolivet /*E
222987497f52SBarry Smith    MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL`
2230c7a4214aSPierre Jolivet 
2231c7a4214aSPierre Jolivet    Values:
223287497f52SBarry Smith +  `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation
223387497f52SBarry Smith .  `MAT_HTOOL_COMPRESSOR_FULL_ACA`                 - full adaptive cross approximation
223487497f52SBarry Smith -  `MAT_HTOOL_COMPRESSOR_SVD`                      - singular value decomposition
2235c7a4214aSPierre Jolivet 
223616a05f60SBarry Smith    Level: intermediate
223716a05f60SBarry Smith 
22381cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType`
2239c7a4214aSPierre Jolivet E*/
22409371c9d4SSatish Balay typedef enum {
22419371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA,
22429371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_FULL_ACA,
22439371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SVD
22449371c9d4SSatish Balay } MatHtoolCompressorType;
22452ef1f0ffSBarry Smith 
224698e73e17SPierre Jolivet /*E
224787497f52SBarry Smith    MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL`
224898e73e17SPierre Jolivet 
224998e73e17SPierre Jolivet    Values:
225087497f52SBarry Smith +  `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default)    - axis computed via principle component analysis, split uniformly
225187497f52SBarry Smith .  `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC`            - axis computed via principle component analysis, split barycentrically
225287497f52SBarry Smith .  `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR`   - axis along the largest extent of the bounding box, split uniformly
225387497f52SBarry Smith -  `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically
225498e73e17SPierre Jolivet 
225516a05f60SBarry Smith    Level: intermediate
225616a05f60SBarry Smith 
22572ef1f0ffSBarry Smith    Note:
22582ef1f0ffSBarry Smith    Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types
225998e73e17SPierre Jolivet 
22601cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType`
226198e73e17SPierre Jolivet E*/
22629371c9d4SSatish Balay typedef enum {
22639371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_REGULAR,
22649371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC,
22659371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR,
22669371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC
22679371c9d4SSatish Balay } MatHtoolClusteringType;
2268c7a4214aSPierre Jolivet #endif
2269c7a4214aSPierre Jolivet 
227097969023SHong Zhang #ifdef PETSC_HAVE_MUMPS
2271014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt);
2272bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *);
2273b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal);
2274bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *);
2275bc6112feSHong Zhang 
2276ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *);
2277ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *);
2278ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *);
2279ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *);
22805c0bae8cSAshish Patel PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **);
228189a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat);
22820e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat);
228397969023SHong Zhang #endif
228423a5497aSJed Brown 
2285b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO
2286d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt);
2287b500a6b7SJose David Bermeol #endif
2288b500a6b7SJose David Bermeol 
2289d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO
2290d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt);
2291d305a81bSVasiliy Kozyrev #endif
2292d305a81bSVasiliy Kozyrev 
2293d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU
2294014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal);
2295d954db57SHong Zhang #endif
2296d954db57SHong Zhang 
2297fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST
2298fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *);
2299fb785984SHong Zhang #endif
2300fb785984SHong Zhang 
2301575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK
2302542aee0fSPieter Ghysels /*E
230329e0a805SPieter Ghysels     MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK`
2304542aee0fSPieter Ghysels 
23052ef1f0ffSBarry Smith     Values:
23062ef1f0ffSBarry Smith +  `MAT_STRUMPACK_NATURAL`   - use the current ordering
23072ef1f0ffSBarry Smith .  `MAT_STRUMPACK_METIS`     - use MeTis to compute an ordering
23082ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PARMETIS`  - use ParMeTis to compute an ordering
23092ef1f0ffSBarry Smith .  `MAT_STRUMPACK_SCOTCH`    - use Scotch to compute an ordering
23102ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PTSCOTCH`  - use parallel Scotch to compute an ordering
231129e0a805SPieter Ghysels .  `MAT_STRUMPACK_RCM`       - use an RCM ordering
231229e0a805SPieter Ghysels .  `MAT_STRUMPACK_GEOMETRIC` - use a geometric ordering (needs mesh info from user)
231329e0a805SPieter Ghysels .  `MAT_STRUMPACK_AMD`       - approximate minimum degree
231429e0a805SPieter Ghysels .  `MAT_STRUMPACK_MMD`       - multiple minimum degree
231529e0a805SPieter Ghysels .  `MAT_STRUMPACK_AND`       - approximate nested dissection
231629e0a805SPieter Ghysels .  `MAT_STRUMPACK_MLF`       - minimum local fill
231729e0a805SPieter Ghysels -  `MAT_STRUMPACK_SPECTRAL`  - spectral nested dissection
23182ef1f0ffSBarry Smith 
231916a05f60SBarry Smith     Level: intermediate
232016a05f60SBarry Smith 
23212ef1f0ffSBarry Smith     Developer Note:
23222ef1f0ffSBarry Smith     Should be called `MatSTRUMPACKReorderingType`
23232ef1f0ffSBarry Smith 
232429e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetReordering()`
2325542aee0fSPieter Ghysels E*/
23269371c9d4SSatish Balay typedef enum {
232729e0a805SPieter Ghysels   MAT_STRUMPACK_NATURAL,
232829e0a805SPieter Ghysels   MAT_STRUMPACK_METIS,
232929e0a805SPieter Ghysels   MAT_STRUMPACK_PARMETIS,
233029e0a805SPieter Ghysels   MAT_STRUMPACK_SCOTCH,
233129e0a805SPieter Ghysels   MAT_STRUMPACK_PTSCOTCH,
233229e0a805SPieter Ghysels   MAT_STRUMPACK_RCM,
233329e0a805SPieter Ghysels   MAT_STRUMPACK_GEOMETRIC,
233429e0a805SPieter Ghysels   MAT_STRUMPACK_AMD,
233529e0a805SPieter Ghysels   MAT_STRUMPACK_MMD,
233629e0a805SPieter Ghysels   MAT_STRUMPACK_AND,
233729e0a805SPieter Ghysels   MAT_STRUMPACK_MLF,
233829e0a805SPieter Ghysels   MAT_STRUMPACK_SPECTRAL
23399371c9d4SSatish Balay } MatSTRUMPACKReordering;
23402ef1f0ffSBarry Smith 
234134f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering);
234229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetReordering(Mat, MatSTRUMPACKReordering *);
234329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricNxyz(Mat, PetscInt, PetscInt, PetscInt);
234429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricComponents(Mat, PetscInt);
234529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricWidth(Mat, PetscInt);
2346575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool);
234729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetColPerm(Mat, PetscBool *);
234829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGPU(Mat, PetscBool);
234929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetGPU(Mat, PetscBool *);
235029e0a805SPieter Ghysels 
235129e0a805SPieter Ghysels /*E
235229e0a805SPieter Ghysels     MatSTRUMPACKCompressionType - Compression used in the approximate sparse factorization solver `MATSOLVERSTRUMPACK`
235329e0a805SPieter Ghysels 
235429e0a805SPieter Ghysels     Values:
235529e0a805SPieter Ghysels +  `MAT_STRUMPACK_COMPRESSION_TYPE_NONE`          - no compression, direct solver
235629e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_HSS`           - hierarchically semi-separable
235729e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_BLR`           - block low rank
235829e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_HODLR`         - hierarchically off-diagonal low rank (requires ButterfyPACK support, configure with --download-butterflypack)
235929e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR`     - hybrid of BLR and HODLR (requires ButterfyPACK support, configure with --download-butterflypack)
236029e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR` - hybrid of lossy (ZFP), BLR and HODLR (requires ButterfyPACK and ZFP support, configure with --download-butterflypack --download-zfp)
236129e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS`      - lossless compression (requires ZFP support, configure with --download-zfp)
236229e0a805SPieter Ghysels -  `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY`         - lossy compression (requires ZFP support, configure with --download-zfp)
236329e0a805SPieter Ghysels 
236429e0a805SPieter Ghysels     Level: intermediate
236529e0a805SPieter Ghysels 
236629e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetCompression()`
236729e0a805SPieter Ghysels E*/
236829e0a805SPieter Ghysels typedef enum {
236929e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_NONE,
237029e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_HSS,
237129e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_BLR,
237229e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_HODLR,
237329e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR,
237429e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR,
237529e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS,
237629e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY
237729e0a805SPieter Ghysels } MatSTRUMPACKCompressionType;
237829e0a805SPieter Ghysels 
237929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompression(Mat, MatSTRUMPACKCompressionType);
238029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompression(Mat, MatSTRUMPACKCompressionType *);
238129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompRelTol(Mat, PetscReal);
238229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompRelTol(Mat, PetscReal *);
238329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompAbsTol(Mat, PetscReal);
238429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompAbsTol(Mat, PetscReal *);
238529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompMinSepSize(Mat, PetscInt);
238629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompMinSepSize(Mat, PetscInt *);
238729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLeafSize(Mat, PetscInt);
238829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLeafSize(Mat, PetscInt *);
238929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLossyPrecision(Mat, PetscInt);
239029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLossyPrecision(Mat, PetscInt *);
239129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompButterflyLevels(Mat, PetscInt);
239229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompButterflyLevels(Mat, PetscInt *);
2393575704cbSPieter Ghysels #endif
2394575704cbSPieter Ghysels 
2395b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool);
23962216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *);
2397edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 13, 0, "MatBindToCPU()", ) static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg)
2398d71ae5a4SJacob Faibussowitsch {
23999371c9d4SSatish Balay   return MatBindToCPU(A, flg);
24009371c9d4SSatish Balay }
240165a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool);
2402e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *);
2403e7e92044SBarry Smith 
2404aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA
24053f9c0db1SPaul Mullowney /*E
24062ef1f0ffSBarry Smith     MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU)
24072692e278SPaul Mullowney     matrices.
2408e057df02SPaul Mullowney 
24092ef1f0ffSBarry Smith     Values:
241087497f52SBarry Smith +   `MAT_CUSPARSE_CSR` - Compressed Sparse Row
241187497f52SBarry Smith .   `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later).
241287497f52SBarry Smith -   `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later).
2413e057df02SPaul Mullowney 
2414e057df02SPaul Mullowney     Level: intermediate
2415e057df02SPaul Mullowney 
24161cc06b55SBarry Smith .seealso: [](ch_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation`
2417e057df02SPaul Mullowney E*/
2418e057df02SPaul Mullowney 
24199371c9d4SSatish Balay typedef enum {
24209371c9d4SSatish Balay   MAT_CUSPARSE_CSR,
24219371c9d4SSatish Balay   MAT_CUSPARSE_ELL,
24229371c9d4SSatish Balay   MAT_CUSPARSE_HYB
24239371c9d4SSatish Balay } MatCUSPARSEStorageFormat;
2424e057df02SPaul Mullowney 
2425e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */
2426e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[];
2427e057df02SPaul Mullowney 
24283f9c0db1SPaul Mullowney /*E
24292ef1f0ffSBarry Smith     MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU)
24302692e278SPaul Mullowney     matrices whose operation should use a particular storage format.
2431e057df02SPaul Mullowney 
24322ef1f0ffSBarry Smith     Values:
24334cf0e950SBarry Smith +   `MAT_CUSPARSE_MULT_DIAG`    - sets the storage format for the diagonal matrix in the parallel `MatMult()`
24344cf0e950SBarry Smith .   `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()`
24354cf0e950SBarry Smith .   `MAT_CUSPARSE_MULT`         - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()`
24362ef1f0ffSBarry Smith -   `MAT_CUSPARSE_ALL`          - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices
2437e057df02SPaul Mullowney 
2438e057df02SPaul Mullowney     Level: intermediate
2439e057df02SPaul Mullowney 
24401cc06b55SBarry Smith .seealso: [](ch_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat`
2441e057df02SPaul Mullowney E*/
24429371c9d4SSatish Balay typedef enum {
24439371c9d4SSatish Balay   MAT_CUSPARSE_MULT_DIAG,
24449371c9d4SSatish Balay   MAT_CUSPARSE_MULT_OFFDIAG,
24459371c9d4SSatish Balay   MAT_CUSPARSE_MULT,
24469371c9d4SSatish Balay   MAT_CUSPARSE_ALL
24479371c9d4SSatish Balay } MatCUSPARSEFormatOperation;
2448e057df02SPaul Mullowney 
244910e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
245010e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2451e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat);
2452365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool);
24535f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
24545f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
24555f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **);
24565f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **);
24575f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **);
24585f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **);
24595f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **);
24605f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **);
2461637a0070SStefano Zampini 
2462637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
2463637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
2464637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **);
2465637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **);
2466637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **);
2467637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **);
2468637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **);
2469637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **);
2470637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *);
2471d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *);
2472637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat);
24733d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *);
24742d1451d4SHong Zhang 
24752d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
24762d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
24779ae82921SPaul Mullowney #endif
24789ae82921SPaul Mullowney 
247947d993e7Ssuyashtn #ifdef PETSC_HAVE_HIP
248047d993e7Ssuyashtn /*E
24812ef1f0ffSBarry Smith     MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU)
248247d993e7Ssuyashtn     matrices.
248347d993e7Ssuyashtn 
24842ef1f0ffSBarry Smith     Values:
24852ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_CSR` - Compressed Sparse Row
24862ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_ELL` - Ellpack
24872ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format
248847d993e7Ssuyashtn 
248916a05f60SBarry Smith     Level: intermediate
249016a05f60SBarry Smith 
24911cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation`
249247d993e7Ssuyashtn E*/
249347d993e7Ssuyashtn 
249447d993e7Ssuyashtn typedef enum {
249547d993e7Ssuyashtn   MAT_HIPSPARSE_CSR,
249647d993e7Ssuyashtn   MAT_HIPSPARSE_ELL,
249747d993e7Ssuyashtn   MAT_HIPSPARSE_HYB
249847d993e7Ssuyashtn } MatHIPSPARSEStorageFormat;
249947d993e7Ssuyashtn 
250047d993e7Ssuyashtn /* these will be strings associated with enumerated type defined above */
250147d993e7Ssuyashtn PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[];
250247d993e7Ssuyashtn 
250347d993e7Ssuyashtn /*E
25042ef1f0ffSBarry Smith     MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU)
250547d993e7Ssuyashtn     matrices whose operation should use a particular storage format.
250647d993e7Ssuyashtn 
25072ef1f0ffSBarry Smith     Values:
25082ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_MULT_DIAG`    - sets the storage format for the diagonal matrix in the parallel `MatMult()`
25094cf0e950SBarry Smith .   `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()`
25102ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_MULT`         - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()`
25112ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_ALL`          - sets the storage format for all HIPSPARSE (GPU) matrices
25122ef1f0ffSBarry Smith 
251316a05f60SBarry Smith     Level: intermediate
251416a05f60SBarry Smith 
25151cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat`
251647d993e7Ssuyashtn E*/
251747d993e7Ssuyashtn typedef enum {
251847d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_DIAG,
251947d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_OFFDIAG,
252047d993e7Ssuyashtn   MAT_HIPSPARSE_MULT,
252147d993e7Ssuyashtn   MAT_HIPSPARSE_ALL
252247d993e7Ssuyashtn } MatHIPSPARSEFormatOperation;
252347d993e7Ssuyashtn 
252447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
252547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
252647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat);
252747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool);
252847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
252947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
253047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **);
253147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **);
253247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **);
253347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **);
253447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **);
253547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **);
253647d993e7Ssuyashtn 
253747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
253847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
253947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **);
254047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **);
254147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **);
254247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **);
254347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **);
254447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **);
254547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *);
254647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *);
254747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat);
25483d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *);
2549773bf0f6SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2550773bf0f6SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
255147d993e7Ssuyashtn #endif
255247d993e7Ssuyashtn 
2553d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL)
2554d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2555d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2556d67ff14aSKarl Rupp #endif
2557d67ff14aSKarl Rupp 
25584bf303faSJacob Faibussowitsch #if PetscDefined(HAVE_KOKKOS)
25594bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
25604bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
25614bf303faSJacob Faibussowitsch #endif
25624bf303faSJacob Faibussowitsch 
256354efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW)
2564014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec);
2565014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec);
25662a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *);
256754efbe56SHong Zhang #endif
256854efbe56SHong Zhang 
2569d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
2570d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2571d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt);
2572d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *);
2573d24d4204SJose E. Roman #endif
2574d24d4204SJose E. Roman 
2575014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *);
2576014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *);
2577014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]);
2578014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]);
2579014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***);
2580014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *);
258119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType);
2582014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]);
2583014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat);
2584d8588912SDave May 
25852ce66baaSPierre Jolivet PETSC_EXTERN PetscErrorCode MatFilter(Mat, PetscReal, PetscBool, PetscBool);
25862ce66baaSPierre Jolivet PETSC_DEPRECATED_FUNCTION(3, 20, 0, "MatFilter()", ) static inline PetscErrorCode MatChop(Mat A, PetscReal tol)
25872ce66baaSPierre Jolivet {
25882ce66baaSPierre Jolivet   return MatFilter(A, tol, PETSC_FALSE, PETSC_FALSE);
25892ce66baaSPierre Jolivet }
2590e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *);
25914325cce7SMatthew G Knepley 
2592b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **);
259353dd7562SDmitry Karpeev 
2594c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat);
2595c094ef40SMatthew G. Knepley 
259602218ef1SBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderMerge(Mat, Mat *);
2597539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *);
25981a2c6b5cSJunchao Zhang 
25997ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *);
260072833a62Smarkadams4 
2601e02fb3cdSMark Adams PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, PetscInt, PetscInt[], Mat *);
260258c11ad4SPierre Jolivet PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat, PetscBool);
2603ad6ad4e1SHansol  Suh 
2604d16ceb75SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *);
26053444e80cSBarry Smith 
26063444e80cSBarry Smith PETSC_EXTERN PetscErrorCode MatSetHPL(Mat, int);
26073444e80cSBarry Smith #define PETSCBMHPL "hpl"
2608