xref: /petsc/include/petscmat.h (revision 2d776b4963042cdf8a412ba09e923aa51facd799)
12eac72dbSBarry Smith /*
22eac72dbSBarry Smith      Include file for the matrix component of PETSc
32eac72dbSBarry Smith */
426bd1501SBarry Smith #ifndef PETSCMAT_H
526bd1501SBarry Smith #define PETSCMAT_H
6ac09b921SBarry Smith 
72c8e378dSBarry Smith #include <petscvec.h>
82eac72dbSBarry Smith 
9ac09b921SBarry Smith /* SUBMANSEC = Mat */
10ac09b921SBarry Smith 
11d9274352SBarry Smith /*S
128f6c3df8SBarry Smith      Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without
138f6c3df8SBarry Smith            an explicit sparse representation (such as matrix-free operators)
142eac72dbSBarry Smith 
15d91e6319SBarry Smith    Level: beginner
16d91e6319SBarry Smith 
17db781477SPatrick Sanan .seealso: `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()`
18d9274352SBarry Smith S*/
19d9274352SBarry Smith typedef struct _p_Mat *Mat;
20d9274352SBarry Smith 
2176bdecfbSBarry Smith /*J
228f6c3df8SBarry Smith     MatType - String with the name of a PETSc matrix type
23d9274352SBarry Smith 
24d9274352SBarry Smith    Level: beginner
25d9274352SBarry Smith 
26db781477SPatrick Sanan .seealso: `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()`
2776bdecfbSBarry Smith J*/
2819fd82e9SBarry Smith typedef const char *MatType;
29273d9f13SBarry Smith #define MATSAME                      "same"
305a11e1b2SBarry Smith #define MATMAIJ                      "maij"
31273d9f13SBarry Smith #define MATSEQMAIJ                   "seqmaij"
32273d9f13SBarry Smith #define MATMPIMAIJ                   "mpimaij"
3349bd79ccSDebojyoti Ghosh #define MATKAIJ                      "kaij"
3449bd79ccSDebojyoti Ghosh #define MATSEQKAIJ                   "seqkaij"
3549bd79ccSDebojyoti Ghosh #define MATMPIKAIJ                   "mpikaij"
36273d9f13SBarry Smith #define MATIS                        "is"
375a11e1b2SBarry Smith #define MATAIJ                       "aij"
38273d9f13SBarry Smith #define MATSEQAIJ                    "seqaij"
39273d9f13SBarry Smith #define MATMPIAIJ                    "mpiaij"
405a11e1b2SBarry Smith #define MATAIJCRL                    "aijcrl"
415a11e1b2SBarry Smith #define MATSEQAIJCRL                 "seqaijcrl"
425a11e1b2SBarry Smith #define MATMPIAIJCRL                 "mpiaijcrl"
439ae82921SPaul Mullowney #define MATAIJCUSPARSE               "aijcusparse"
449ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE            "seqaijcusparse"
459ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE            "mpiaijcusparse"
468c3ff71bSJunchao Zhang #define MATAIJKOKKOS                 "aijkokkos"
478c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS              "seqaijkokkos"
488c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS              "mpiaijkokkos"
49d67ff14aSKarl Rupp #define MATAIJVIENNACL               "aijviennacl"
50d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL            "seqaijviennacl"
51d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL            "mpiaijviennacl"
525a11e1b2SBarry Smith #define MATAIJPERM                   "aijperm"
535a11e1b2SBarry Smith #define MATSEQAIJPERM                "seqaijperm"
545a11e1b2SBarry Smith #define MATMPIAIJPERM                "mpiaijperm"
554dfdc2d9SRichard Tran Mills #define MATAIJSELL                   "aijsell"
564dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL                "seqaijsell"
574dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL                "mpiaijsell"
584a2a386eSRichard Tran Mills #define MATAIJMKL                    "aijmkl"
594a2a386eSRichard Tran Mills #define MATSEQAIJMKL                 "seqaijmkl"
604a2a386eSRichard Tran Mills #define MATMPIAIJMKL                 "mpiaijmkl"
61b5b72c8aSIrina Sokolova #define MATBAIJMKL                   "baijmkl"
62b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL                "seqbaijmkl"
63b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL                "mpibaijmkl"
64273d9f13SBarry Smith #define MATSHELL                     "shell"
65c1fff1c6SRichard Tran Mills #define MATCENTERING                 "centering"
665a11e1b2SBarry Smith #define MATDENSE                     "dense"
67637a0070SStefano Zampini #define MATDENSECUDA                 "densecuda"
68209238afSKris Buschelman #define MATSEQDENSE                  "seqdense"
69bfc799aaSStefano Zampini #define MATSEQDENSECUDA              "seqdensecuda"
70273d9f13SBarry Smith #define MATMPIDENSE                  "mpidense"
71637a0070SStefano Zampini #define MATMPIDENSECUDA              "mpidensecuda"
72db31f6deSJed Brown #define MATELEMENTAL                 "elemental"
73d24d4204SJose E. Roman #define MATSCALAPACK                 "scalapack"
745a11e1b2SBarry Smith #define MATBAIJ                      "baij"
75273d9f13SBarry Smith #define MATSEQBAIJ                   "seqbaij"
76273d9f13SBarry Smith #define MATMPIBAIJ                   "mpibaij"
77273d9f13SBarry Smith #define MATMPIADJ                    "mpiadj"
785a11e1b2SBarry Smith #define MATSBAIJ                     "sbaij"
79273d9f13SBarry Smith #define MATSEQSBAIJ                  "seqsbaij"
80273d9f13SBarry Smith #define MATMPISBAIJ                  "mpisbaij"
81cebc7f6cSBarry Smith #define MATMFFD                      "mffd"
82c8a8475eSBarry Smith #define MATNORMAL                    "normal"
83c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN           "normalh"
84ab92ecdeSBarry Smith #define MATLRC                       "lrc"
852a6744ebSBarry Smith #define MATSCATTER                   "scatter"
86421e10b8SBarry Smith #define MATBLOCKMAT                  "blockmat"
87793850ffSBarry Smith #define MATCOMPOSITE                 "composite"
881f8c7532SHong Zhang #define MATFFT                       "fft"
891f8c7532SHong Zhang #define MATFFTW                      "fftw"
90e133240eSMatthew G Knepley #define MATSEQCUFFT                  "seqcufft"
91013e2dc7SBarry Smith #define MATTRANSPOSEMAT              PETSC_DEPRECATED_MACRO("GCC warning \"MATTRANSPOSEMAT macro is deprecated use MATTRANSPOSEVIRTUAL (since version 3.18)\"") "transpose"
92013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL          "transpose"
93013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose"
9472ca8751SBarry Smith #define MATSCHURCOMPLEMENT           "schurcomplement"
951d6018f0SLisandro Dalcin #define MATPYTHON                    "python"
9663c07aadSStefano Zampini #define MATHYPRE                     "hypre"
97f91d8e95SBarry Smith #define MATHYPRESTRUCT               "hyprestruct"
98a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT              "hypresstruct"
99ee1cef2cSJed Brown #define MATSUBMATRIX                 "submatrix"
1002c0dbf93SJed Brown #define MATLOCALREF                  "localref"
101d8588912SDave May #define MATNEST                      "nest"
102c094ef40SMatthew G. Knepley #define MATPREALLOCATOR              "preallocator"
103d4002b98SHong Zhang #define MATSELL                      "sell"
104d4002b98SHong Zhang #define MATSEQSELL                   "seqsell"
105d4002b98SHong Zhang #define MATMPISELL                   "mpisell"
106a3b2e22bSHong Zhang #define MATDUMMY                     "dummy"
107cd929ea3SAlp Dener #define MATLMVM                      "lmvm"
10878e4361aSAlp Dener #define MATLMVMDFP                   "lmvmdfp"
10978e4361aSAlp Dener #define MATLMVMBFGS                  "lmvmbfgs"
11078e4361aSAlp Dener #define MATLMVMSR1                   "lmvmsr1"
111864588a7SAlp Dener #define MATLMVMBROYDEN               "lmvmbroyden"
112864588a7SAlp Dener #define MATLMVMBADBROYDEN            "lmvmbadbroyden"
113864588a7SAlp Dener #define MATLMVMSYMBROYDEN            "lmvmsymbroyden"
114864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN         "lmvmsymbadbroyden"
115864588a7SAlp Dener #define MATLMVMDIAGBROYDEN           "lmvmdiagbroyden"
1163423f386SBarry Smith #define MATCONSTANTDIAGONAL          "constantdiagonal"
117c7a4214aSPierre Jolivet #define MATHTOOL                     "htool"
11853022affSStefano Zampini #define MATH2OPUS                    "h2opus"
119773941d6SBarry Smith 
12076bdecfbSBarry Smith /*J
1213ca39a21SBarry Smith     MatSolverType - String with the name of a PETSc matrix solver type.
1229989ab13SBarry Smith 
123c2b89b5dSBarry Smith     For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc
1249989ab13SBarry Smith 
1259989ab13SBarry Smith    Level: beginner
1269989ab13SBarry Smith 
1273f498edaSToby Isaac    Notes:  MATSOLVERUMFPACK, MATSOLVERCHOLMOD, MATSOLVERKLU, MATSOLVERSPQR form the SuiteSparse package for which you can use --download-suitesparse
128c7ccbb75SBarry Smith 
129db781477SPatrick Sanan .seealso: `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()`
13076bdecfbSBarry Smith J*/
131ea799195SBarry Smith typedef const char *MatSolverType;
1322692d6eeSBarry Smith #define MATSOLVERSUPERLU         "superlu"
1332692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST    "superlu_dist"
13408f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK       "strumpack"
1352692d6eeSBarry Smith #define MATSOLVERUMFPACK         "umfpack"
13620db9a53SJed Brown #define MATSOLVERCHOLMOD         "cholmod"
137d89f5e7aSBarry Smith #define MATSOLVERKLU             "klu"
138418810c4SBarry Smith #define MATSOLVERSPARSEELEMENTAL "sparseelemental"
139d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL       "elemental"
140d24d4204SJose E. Roman #define MATSOLVERSCALAPACK       "scalapack"
1412692d6eeSBarry Smith #define MATSOLVERESSL            "essl"
1422692d6eeSBarry Smith #define MATSOLVERLUSOL           "lusol"
1432692d6eeSBarry Smith #define MATSOLVERMUMPS           "mumps"
144d615f992SSatish Balay #define MATSOLVERMKL_PARDISO     "mkl_pardiso"
145d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO    "mkl_cpardiso"
1462692d6eeSBarry Smith #define MATSOLVERPASTIX          "pastix"
1472692d6eeSBarry Smith #define MATSOLVERMATLAB          "matlab"
1482692d6eeSBarry Smith #define MATSOLVERPETSC           "petsc"
1492692d6eeSBarry Smith #define MATSOLVERBAS             "bas"
1509ae82921SPaul Mullowney #define MATSOLVERCUSPARSE        "cusparse"
151bddcd29dSMark Adams #define MATSOLVERCUSPARSEBAND    "cusparseband"
152bfc799aaSStefano Zampini #define MATSOLVERCUDA            "cuda"
153930e68a5SMark Adams #define MATSOLVERKOKKOS          "kokkos"
1548f7e8f9dSMark Adams #define MATSOLVERKOKKOSDEVICE    "kokkosdevice"
155a2fc1e05SToby Isaac #define MATSOLVERSPQR            "spqr"
156c0cdd4a1SDahai Guo 
157b24902e0SBarry Smith /*E
158b24902e0SBarry Smith     MatFactorType - indicates what type of factorization is requested
159b24902e0SBarry Smith 
160b24902e0SBarry Smith     Level: beginner
161b24902e0SBarry Smith 
162af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
163b24902e0SBarry Smith 
164db781477SPatrick Sanan .seealso: `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()`
165b24902e0SBarry Smith E*/
1669371c9d4SSatish Balay typedef enum {
1679371c9d4SSatish Balay   MAT_FACTOR_NONE,
1689371c9d4SSatish Balay   MAT_FACTOR_LU,
1699371c9d4SSatish Balay   MAT_FACTOR_CHOLESKY,
1709371c9d4SSatish Balay   MAT_FACTOR_ILU,
1719371c9d4SSatish Balay   MAT_FACTOR_ICC,
1729371c9d4SSatish Balay   MAT_FACTOR_ILUDT,
1739371c9d4SSatish Balay   MAT_FACTOR_QR,
1749371c9d4SSatish Balay   MAT_FACTOR_NUM_TYPES
1759371c9d4SSatish Balay } MatFactorType;
176014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[];
177e92e720dSBarry Smith 
178ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *);
179ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *);
180f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *);
181d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatFactorGetCanUseOrdering() (since version 3.15)") static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b)
182d71ae5a4SJacob Faibussowitsch {
1839371c9d4SSatish Balay   return MatFactorGetCanUseOrdering(A, b);
1849371c9d4SSatish Balay }
185ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *);
186014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *);
1877abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType);
1882430ea28SJose E. Roman PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatSolverFunction)(Mat, MatFactorType, Mat *);
1892430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode            MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFunction);
1902430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode            MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFunction *);
19125ef9dfeSBarry Smith typedef MatSolverType MatSolverPackage PETSC_DEPRECATED_TYPEDEF("Use MatSolverType (since version 3.9)");
192d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSolverTypeRegister() (since version 3.9)") static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFunction f)
193d71ae5a4SJacob Faibussowitsch {
1949371c9d4SSatish Balay   return MatSolverTypeRegister(stype, mtype, ftype, f);
1959371c9d4SSatish Balay }
196d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSolverTypeGet() (since version 3.9)") static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFunction *f)
197d71ae5a4SJacob Faibussowitsch {
1989371c9d4SSatish Balay   return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f);
1999371c9d4SSatish Balay }
2009989ab13SBarry Smith 
2014222ddf1SHong Zhang /*E
2024222ddf1SHong Zhang     MatProductType - indicates what type of matrix product is requested
2034222ddf1SHong Zhang 
2044222ddf1SHong Zhang     Level: beginner
2054222ddf1SHong Zhang 
206db781477SPatrick Sanan .seealso: `MatProductSetType()`
2074222ddf1SHong Zhang E*/
2089371c9d4SSatish Balay typedef enum {
2099371c9d4SSatish Balay   MATPRODUCT_UNSPECIFIED = 0,
2109371c9d4SSatish Balay   MATPRODUCT_AB,
2119371c9d4SSatish Balay   MATPRODUCT_AtB,
2129371c9d4SSatish Balay   MATPRODUCT_ABt,
2139371c9d4SSatish Balay   MATPRODUCT_PtAP,
2149371c9d4SSatish Balay   MATPRODUCT_RARt,
2159371c9d4SSatish Balay   MATPRODUCT_ABC
2169371c9d4SSatish Balay } MatProductType;
217544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[];
2184222ddf1SHong Zhang 
2194222ddf1SHong Zhang /*J
2204222ddf1SHong Zhang     MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation
2214222ddf1SHong Zhang 
2224222ddf1SHong Zhang    Level: beginner
2234222ddf1SHong Zhang 
224db781477SPatrick Sanan .seealso: `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType`
2254222ddf1SHong Zhang J*/
2264222ddf1SHong Zhang typedef const char *MatProductAlgorithm;
2273e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT         "default"
2283e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED          "sorted"
2293e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE        "scalable"
2303e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST    "scalable_fast"
2313e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP            "heap"
2323e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP           "btheap"
2333e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED     "llcondensed"
2343e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE        "rowmerge"
2353e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT    "outerproduct"
2363e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB             "at*b"
2373e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP             "rap"
2383e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE     "nonscalable"
2393e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI          "seqmpi"
2403e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND         "backend"
2413e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING     "overlapping"
2423e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED          "merged"
2433e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE       "allatonce"
2443e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged"
2453e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV      "allgatherv"
2463e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC          "cyclic"
2473e662e0bSHong Zhang #if defined(PETSC_HAVE_HYPRE)
2483e662e0bSHong Zhang   #define MATPRODUCTALGORITHMHYPRE "hypre"
2493e662e0bSHong Zhang #endif
2504222ddf1SHong Zhang 
2514222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *);
2524222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat);
2534222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType);
2544222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm);
2554222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal);
2564222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat);
2574222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat);
2584222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat);
2594222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat);
2604417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat);
2616718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer);
262c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *);
263c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *);
2644222ddf1SHong Zhang 
265c06d978dSMatthew Knepley /* Logging support */
2660700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */
267014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID;
268335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID;
269014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID;
270014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID;
271014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID;
272014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID;
273014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID;
274014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID;
275c06d978dSMatthew Knepley 
276ceb03754SKris Buschelman /*E
2777dae84e0SHong Zhang     MatReuse - Indicates if matrices obtained from a previous call to MatCreateSubMatrices(), MatCreateSubMatrix(), MatConvert() or several other functions
278cf37664fSBarry Smith      are to be reused to store the new matrix values.
279cf37664fSBarry Smith 
280cf37664fSBarry Smith $  MAT_INITIAL_MATRIX - create a new matrix
281cf37664fSBarry Smith $  MAT_REUSE_MATRIX - reuse the matrix created with a previous call that used MAT_INITIAL_MATRIX
282cf37664fSBarry Smith $  MAT_INPLACE_MATRIX - replace the first input matrix with the new matrix (not applicable to all functions)
283cf37664fSBarry Smith $  MAT_IGNORE_MATRIX - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions)
284ceb03754SKris Buschelman 
285ceb03754SKris Buschelman     Level: beginner
286ceb03754SKris Buschelman 
287af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
288ceb03754SKris Buschelman 
289db781477SPatrick Sanan .seealso: `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()`
290ceb03754SKris Buschelman E*/
2919371c9d4SSatish Balay typedef enum {
2929371c9d4SSatish Balay   MAT_INITIAL_MATRIX,
2939371c9d4SSatish Balay   MAT_REUSE_MATRIX,
2949371c9d4SSatish Balay   MAT_IGNORE_MATRIX,
2959371c9d4SSatish Balay   MAT_INPLACE_MATRIX
2969371c9d4SSatish Balay } MatReuse;
297ceb03754SKris Buschelman 
2985494a064SHong Zhang /*E
2997dae84e0SHong Zhang     MatCreateSubMatrixOption - Indicates if matrices obtained from a call to MatCreateSubMatrices()
300446c23c1SPierre Jolivet      include the matrix values. Currently it is only used by MatGetSeqNonzeroStructure().
3015494a064SHong Zhang 
3025494a064SHong Zhang     Level: beginner
3035494a064SHong Zhang 
304db781477SPatrick Sanan .seealso: `MatGetSeqNonzeroStructure()`
3055494a064SHong Zhang E*/
3069371c9d4SSatish Balay typedef enum {
3079371c9d4SSatish Balay   MAT_DO_NOT_GET_VALUES,
3089371c9d4SSatish Balay   MAT_GET_VALUES
3099371c9d4SSatish Balay } MatCreateSubMatrixOption;
3105494a064SHong Zhang 
311607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void);
312c06d978dSMatthew Knepley 
313014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *);
314014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt);
31519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType);
3160d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *);
3170d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType);
318014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat);
319fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]);
320bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat));
32123bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]);
322014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]);
32326cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]);
32426cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]);
325014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]);
326014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]);
32784d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool);
328f69a0ea3SMatthew Knepley 
329140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList;
330140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList;
331140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList;
33228988994SBarry Smith 
3333b224e63SBarry Smith /*E
334aa6c7ce3SBarry Smith     MatStructure - Indicates if two matrices have the same nonzero structure
3353b224e63SBarry Smith 
3363b224e63SBarry Smith     Level: beginner
3373b224e63SBarry Smith 
338531d0c6aSBarry Smith $  SAME_NONZERO_PATTERN  - the two matrices have identical nonzero patterns
339531d0c6aSBarry Smith $  DIFFERENT_NONZERO_PATTERN - the two matrices may have different nonzero patterns
340531d0c6aSBarry Smith $  SUBSET_NONZERO_PATTERN - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix
341531d0c6aSBarry Smith $  UNKNOWN_NONZERO_PATTERN - there is no known relationship between the nonzero patterns. In this case the implementations may try to detect a relationship to optimize the operation
342531d0c6aSBarry Smith 
343531d0c6aSBarry Smith    Developer Notes:
344d60b7d5cSBarry Smith      Any additions/changes here MUST also be made in src/mat/f90-mod/petscmat.h
3453b224e63SBarry Smith 
346db781477SPatrick Sanan .seealso: `MatCopy()`, `MatAXPY()`, `MatAYPX()`
3473b224e63SBarry Smith E*/
3489371c9d4SSatish Balay typedef enum {
3499371c9d4SSatish Balay   DIFFERENT_NONZERO_PATTERN,
3509371c9d4SSatish Balay   SUBSET_NONZERO_PATTERN,
3519371c9d4SSatish Balay   SAME_NONZERO_PATTERN,
3529371c9d4SSatish Balay   UNKNOWN_NONZERO_PATTERN
3539371c9d4SSatish Balay } MatStructure;
354d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[];
3553b224e63SBarry Smith 
3569779e05dSSatish Balay #if defined                 PETSC_HAVE_MKL_SPARSE
357ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
358ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
35980095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
360ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
36180095d54SIrina Sokolova #endif
362cd929ea3SAlp Dener 
363d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
364d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
365d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]);
366d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
36780095d54SIrina Sokolova 
368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
369014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
370014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
371014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
372014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
3738f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
3746a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]);
375014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *);
3763b00a383SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *);
3773b00a383SHong Zhang 
378014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
379014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
380014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
3817e8381f9SStefano Zampini 
382e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]);
38382a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]);
3847e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode);
385d21a29f3SJed Brown 
386014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *);
387014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
388d21a29f3SJed Brown 
389014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
390014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
39138f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
392014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
3934cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]);
394dfb205c3SBarry Smith 
395014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *);
396c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *);
397014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *);
398c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *);
399986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *);
400267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *);
401c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *);
402014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
403014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
404c0cdd4a1SDahai Guo 
405014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *);
406014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter);
407014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *);
408014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *);
409014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat);
410014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat);
4119371c9d4SSatish Balay typedef enum {
4129371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_RIGHT,
4139371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_LEFT
4149371c9d4SSatish Balay } MatCompositeMergeType;
4158c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType);
416014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *);
4179371c9d4SSatish Balay typedef enum {
4189371c9d4SSatish Balay   MAT_COMPOSITE_ADDITIVE,
4199371c9d4SSatish Balay   MAT_COMPOSITE_MULTIPLICATIVE
4209371c9d4SSatish Balay } MatCompositeType;
421014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType);
4226dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *);
4233b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure);
4243b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *);
4256d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *);
4268b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *);
42703049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *);
4286d7c1e57SBarry Smith 
42919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *);
430014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *);
431dedccee8SHong Zhang 
432014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *);
4338060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *);
434d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *);
43506511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *);
436fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *);
43765f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *);
43854e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *);
43954e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS);
440014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *);
4413423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *);
4421472f72bSBarry Smith 
443978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE)
444d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
445978814f1SStefano Zampini #endif
446978814f1SStefano Zampini 
447014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]);
448ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]);
4491d6018f0SLisandro Dalcin 
450846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat);
451014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat);
452014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *);
453e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *);
45421c89e3eSBarry Smith 
455014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat);
456014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat);
457014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat);
458014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *);
459014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *);
460713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **);
4610da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *);
462479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat);
4638a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *);
46499cafbc1SBarry Smith 
4658ed539a5SBarry Smith /* ------------------------------------------------------------*/
466014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
4678a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode);
468014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
469014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]);
470014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]);
471014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]);
47273a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom);
47384cb2905SBarry Smith 
4742ef4de8bSBarry Smith /*S
4752ef4de8bSBarry Smith      MatStencil - Data structure (C struct) for storing information about a single row or
47687497f52SBarry Smith         column of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()`
47762ef0227SBarry Smith 
47862ef0227SBarry Smith    The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored).
47987497f52SBarry Smith    The c represents the the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored.
48062ef0227SBarry Smith 
48187497f52SBarry Smith    For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`.
482be479b30SJed Brown 
48387497f52SBarry Smith    Fortran usage is different, see `MatSetValuesStencil()` for details.
4842ef4de8bSBarry Smith 
4852ef4de8bSBarry Smith    Level: beginner
4862ef4de8bSBarry Smith 
487db781477SPatrick Sanan .seealso: `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`
4882ef4de8bSBarry Smith S*/
489435da068SBarry Smith typedef struct {
490c1ac3661SBarry Smith   PetscInt k, j, i, c;
491435da068SBarry Smith } MatStencil;
4922ef4de8bSBarry Smith 
493014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
494014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
495014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt);
496435da068SBarry Smith 
497d91e6319SBarry Smith /*E
49887497f52SBarry Smith     MatAssemblyType - Indicates if the matrix is now to be used, for example in a solver, or if you plan
49962ef0227SBarry Smith      to continue to add or insert values to it
500d91e6319SBarry Smith 
501d91e6319SBarry Smith     Level: beginner
502d91e6319SBarry Smith 
503db781477SPatrick Sanan .seealso: `MatAssemblyBegin()`, `MatAssemblyEnd()`
504d91e6319SBarry Smith E*/
5059371c9d4SSatish Balay typedef enum {
5069371c9d4SSatish Balay   MAT_FLUSH_ASSEMBLY = 1,
5079371c9d4SSatish Balay   MAT_FINAL_ASSEMBLY = 0
5089371c9d4SSatish Balay } MatAssemblyType;
509014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType);
510014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType);
511014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *);
5124f9c727eSBarry Smith 
513d91e6319SBarry Smith /*E
514d91e6319SBarry Smith     MatOption - Options that may be set for a matrix and its behavior or storage
515d91e6319SBarry Smith 
516d91e6319SBarry Smith     Level: beginner
517d91e6319SBarry Smith 
51895452b02SPatrick Sanan    Developer Notes:
51995452b02SPatrick Sanan    Entries that are negative need not be called collectively by all processes.
520382164b0SBarry Smith 
52187497f52SBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
52287497f52SBarry Smith 
52387497f52SBarry Smith    Any additions/changes here must also be made in src/mat/interface/dlregismat.c in MatOptions[]
52487497f52SBarry Smith 
525db781477SPatrick Sanan .seealso: `MatSetOption()`
526d91e6319SBarry Smith E*/
5279371c9d4SSatish Balay typedef enum {
5289371c9d4SSatish Balay   MAT_OPTION_MIN                  = -3,
529c5e4d11fSDmitry Karpeev   MAT_UNUSED_NONZERO_LOCATION_ERR = -2,
53092d4d306SBarry Smith   MAT_ROW_ORIENTED                = -1,
531382164b0SBarry Smith   MAT_SYMMETRIC                   = 1,
532382164b0SBarry Smith   MAT_STRUCTURALLY_SYMMETRIC      = 2,
5338c78258cSHong Zhang   MAT_FORCE_DIAGONAL_ENTRIES      = 3,
534382164b0SBarry Smith   MAT_IGNORE_OFF_PROC_ENTRIES     = 4,
535382164b0SBarry Smith   MAT_USE_HASH_TABLE              = 5,
536382164b0SBarry Smith   MAT_KEEP_NONZERO_PATTERN        = 6,
537382164b0SBarry Smith   MAT_IGNORE_ZERO_ENTRIES         = 7,
538382164b0SBarry Smith   MAT_USE_INODES                  = 8,
539382164b0SBarry Smith   MAT_HERMITIAN                   = 9,
540382164b0SBarry Smith   MAT_SYMMETRY_ETERNAL            = 10,
541c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_LOCATION_ERR    = 11,
542382164b0SBarry Smith   MAT_IGNORE_LOWER_TRIANGULAR     = 12,
543382164b0SBarry Smith   MAT_ERROR_LOWER_TRIANGULAR      = 13,
544382164b0SBarry Smith   MAT_GETROW_UPPERTRIANGULAR      = 14,
545382164b0SBarry Smith   MAT_SPD                         = 15,
54692d4d306SBarry Smith   MAT_NO_OFF_PROC_ZERO_ROWS       = 16,
54792d4d306SBarry Smith   MAT_NO_OFF_PROC_ENTRIES         = 17,
54892d4d306SBarry Smith   MAT_NEW_NONZERO_LOCATIONS       = 18,
549c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_ALLOCATION_ERR  = 19,
550c5e4d11fSDmitry Karpeev   MAT_SUBSET_OFF_PROC_ENTRIES     = 20,
551c10200c1SHong Zhang   MAT_SUBMAT_SINGLEIS             = 21,
552957cac9fSHong Zhang   MAT_STRUCTURE_ONLY              = 22,
553071fcb05SBarry Smith   MAT_SORTED_FULL                 = 23,
5541a2c6b5cSJunchao Zhang   MAT_FORM_EXPLICIT_TRANSPOSE     = 24,
555b94d7dedSBarry Smith   MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25,
556b94d7dedSBarry Smith   MAT_SPD_ETERNAL                 = 26,
5579371c9d4SSatish Balay   MAT_OPTION_MAX                  = 27
5589371c9d4SSatish Balay } MatOption;
559e057df02SPaul Mullowney 
5600f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions;
561014dd563SJed Brown PETSC_EXTERN PetscErrorCode     MatSetOption(Mat, MatOption, PetscBool);
5627d68702bSBarry Smith PETSC_EXTERN PetscErrorCode     MatGetOption(Mat, MatOption, PetscBool *);
563856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode     MatPropagateSymmetryOptions(Mat, Mat);
56419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode     MatGetType(Mat, MatType *);
56584cb2905SBarry Smith 
566014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
567014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
568014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
569014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRowUpperTriangular(Mat);
570014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRowUpperTriangular(Mat);
571014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetColumnVector(Mat, Vec, PetscInt);
5728c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArray(Mat, PetscScalar *[]);
5738f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]);
574d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]);
5758c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArray(Mat, PetscScalar *[]);
5768f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]);
577d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]);
57821e72a00SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *);
579bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
5804099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetType(Mat, MatType);
581ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode    MatSeqAIJKron(Mat, Mat, MatReuse, Mat *);
582388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode    MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *));
5834099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList;
584cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJGetArray(Mat, PetscScalar *[]);
585cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJRestoreArray(Mat, PetscScalar *[]);
5868397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJGetArray(Mat, PetscScalar *[]);
5878397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]);
5888c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArray(Mat, PetscScalar *[]);
5898c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArray(Mat, PetscScalar *[]);
590d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDensePlaceArray(Mat, const PetscScalar[]);
591d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseReplaceArray(Mat, const PetscScalar[]);
592d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseResetArray(Mat);
5938572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArrayRead(Mat, const PetscScalar *[]);
5948572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayRead(Mat, const PetscScalar *[]);
5956947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWrite(Mat, PetscScalar *[]);
5966947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWrite(Mat, PetscScalar *[]);
597014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSize(Mat, PetscInt *);
598014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSize(Mat, PetscInt);
599014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSizes(Mat, PetscInt *, PetscInt *);
600014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizes(Mat, PetscInt, PetscInt);
60133d57670SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizesFromMats(Mat, Mat, Mat);
6020da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode    MatSetVariableBlockSizes(Mat, PetscInt, PetscInt *);
6030da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode    MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt **);
6040da83c2eSBarry Smith 
60586aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]);
60686aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]);
6076947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *);
6086947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *);
6096947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *);
6106947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *);
6116947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *);
6126947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *);
613a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
6145ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *);
6151620fd73SBarry Smith 
616014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec);
617014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec);
618014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec);
619014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec);
620014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec);
621014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *);
622014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *);
623014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec);
624014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec);
625014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat);
626bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat);
627eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat);
628f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec);
629f5edf698SHong Zhang 
630d91e6319SBarry Smith /*E
631d91e6319SBarry Smith     MatDuplicateOption - Indicates if a duplicated sparse matrix should have
632d91e6319SBarry Smith   its numerical values copied over or just its nonzero structure.
633d91e6319SBarry Smith 
634d91e6319SBarry Smith     Level: beginner
635d91e6319SBarry Smith 
636af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
637d91e6319SBarry Smith 
63887497f52SBarry Smith $   `MAT_DO_NOT_COPY_VALUES`    - Create a matrix using the same nonzero pattern as the original matrix,
6390018da39SRichard Tran Mills $                               with zeros for the numerical values.
64087497f52SBarry Smith $   `MAT_COPY_VALUES`           - Create a matrix with the same nonzero pattern as the original matrix
6410018da39SRichard Tran Mills $                               and with the same numerical values.
64287497f52SBarry Smith $   `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix
6430018da39SRichard Tran Mills $                               and does not copy it, using zeros for the numerical values. The parent and
6440018da39SRichard Tran Mills $                               child matrices will share their index (i and j) arrays, and you cannot
6450018da39SRichard Tran Mills $                               insert new nonzero entries into either matrix.
6460018da39SRichard Tran Mills 
64787497f52SBarry Smith   Note:
64887497f52SBarry Smith   Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in
64987497f52SBarry Smith   this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified.
65070dcbbb9SBarry Smith 
651db781477SPatrick Sanan .seealso: `MatDuplicate()`
652d91e6319SBarry Smith E*/
6539371c9d4SSatish Balay typedef enum {
6549371c9d4SSatish Balay   MAT_DO_NOT_COPY_VALUES,
6559371c9d4SSatish Balay   MAT_COPY_VALUES,
6569371c9d4SSatish Balay   MAT_SHARE_NONZERO_PATTERN
6579371c9d4SSatish Balay } MatDuplicateOption;
6582e8a6d31SBarry Smith 
65919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *);
660014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *);
66194a9d846SBarry Smith 
662014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure);
663014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer);
664014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *);
665014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *);
666014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *);
667014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *);
668014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *);
669b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *);
670b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *);
671014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *);
672014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer);
6737b80b807SBarry Smith 
6741a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
6751a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
6761a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
6771a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
678d4fbbf0eSBarry Smith 
679d91e6319SBarry Smith /*S
68087497f52SBarry Smith      MatInfo - Context of matrix information, used with `MatGetInfo()`
681d91e6319SBarry Smith 
68287497f52SBarry Smith    In Fortran this is simply a double precision array of dimension `MAT_INFO_SIZE`
683d91e6319SBarry Smith 
684d91e6319SBarry Smith    Level: intermediate
685d91e6319SBarry Smith 
686db781477SPatrick Sanan .seealso: `MatGetInfo()`, `MatInfoType`
687d91e6319SBarry Smith S*/
6884e220ebcSLois Curfman McInnes typedef struct {
689b0a32e0cSBarry Smith   PetscLogDouble block_size;                          /* block size */
690b0a32e0cSBarry Smith   PetscLogDouble nz_allocated, nz_used, nz_unneeded;  /* number of nonzeros */
691b0a32e0cSBarry Smith   PetscLogDouble memory;                              /* memory allocated */
692b0a32e0cSBarry Smith   PetscLogDouble assemblies;                          /* number of matrix assemblies called */
693b0a32e0cSBarry Smith   PetscLogDouble mallocs;                             /* number of mallocs during MatSetValues() */
694b0a32e0cSBarry Smith   PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */
695b0a32e0cSBarry Smith   PetscLogDouble factor_mallocs;                      /* number of mallocs during factorization */
6964e220ebcSLois Curfman McInnes } MatInfo;
6974e220ebcSLois Curfman McInnes 
698d9274352SBarry Smith /*E
699d9274352SBarry Smith     MatInfoType - Indicates if you want information about the local part of the matrix,
700d9274352SBarry Smith      the entire parallel matrix or the maximum over all the local parts.
701d9274352SBarry Smith 
702d9274352SBarry Smith     Level: beginner
703d9274352SBarry Smith 
704af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
705d9274352SBarry Smith 
706db781477SPatrick Sanan .seealso: `MatGetInfo()`, `MatInfo`
707d9274352SBarry Smith E*/
7089371c9d4SSatish Balay typedef enum {
7099371c9d4SSatish Balay   MAT_LOCAL      = 1,
7109371c9d4SSatish Balay   MAT_GLOBAL_MAX = 2,
7119371c9d4SSatish Balay   MAT_GLOBAL_SUM = 3
7129371c9d4SSatish Balay } MatInfoType;
713014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *);
714014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec);
715014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]);
716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]);
717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]);
718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]);
719014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec);
720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *);
7217fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *);
7227fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat);
723014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *);
724014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *);
725014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec);
726014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode);
727a52676ecSHong Zhang 
728014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *);
729014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *);
730014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *);
731014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
732014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
733e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
734e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
735a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
736a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
737cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
7384222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
739447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
74086919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *);
7417b80b807SBarry Smith 
742014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *);
743014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *);
744857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *);
745857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *);
746857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *);
747857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *);
748857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *);
749857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *);
750857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *);
751014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat);
7521b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat);
753014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
754014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec);
755014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
756014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
757014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
758014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec);
7597b80b807SBarry Smith 
760014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *);
761014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *);
762014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *);
763014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **);
764014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *);
765014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **);
766566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *);
7675ef9f2a5SBarry Smith 
7687dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
769d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatrices() (since version 3.8)") static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
770d71ae5a4SJacob Faibussowitsch {
7719371c9d4SSatish Balay   return MatCreateSubMatrices(mat, n, irow, icol, scall, submat);
7729371c9d4SSatish Balay }
7737dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
774d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatricesMPI() (since version 3.8)") static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
775d71ae5a4SJacob Faibussowitsch {
7769371c9d4SSatish Balay   return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat);
7779371c9d4SSatish Balay }
778014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]);
779df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]);
7807dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *);
781d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatrix() (since version 3.8)") static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat)
782d71ae5a4SJacob Faibussowitsch {
7839371c9d4SSatish Balay   return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat);
7849371c9d4SSatish Balay }
785014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *);
786014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *);
787014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *);
788014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *);
7897b80b807SBarry Smith 
790014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *);
791014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *);
792014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat);
793014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *);
7948a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *);
795014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
796ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *);
797f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *);
798014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *);
799014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]);
8008efafbd8SBarry Smith 
801014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt);
802aa1e27eaSFande Kong PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov);
803d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool);
8047b80b807SBarry Smith 
805014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
80622440eb1SKris Buschelman 
8077bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
8082df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
8097bab7c10SHong Zhang 
810014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *);
811014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *);
81222440eb1SKris Buschelman 
813014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
814014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *);
815bc011b1eSHong Zhang 
816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure);
817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure);
8181c741599SHong Zhang 
819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar);
820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar);
8217b80b807SBarry Smith 
822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping);
823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
824a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *);
82581fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout);
826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
830e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
831014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
832014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
833052efed2SBarry Smith 
834014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt);
835014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *);
83690f02eecSBarry Smith 
837014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec);
838014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec);
839014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec);
84030b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *);
84130b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *);
84230b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *);
8432a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *);
844d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateVecs() (since version 3.6)") static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y)
845d71ae5a4SJacob Faibussowitsch {
8469371c9d4SSatish Balay   return MatCreateVecs(mat, x, y);
8479371c9d4SSatish Balay }
84853cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *);
849014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *);
850014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *);
8513a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *);
8529c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *);
853bd481603SBarry Smith 
854bd481603SBarry Smith /*MC
8551620fd73SBarry Smith    MatSetValue - Set a single entry into a matrix.
8561620fd73SBarry Smith 
8571620fd73SBarry Smith    Not collective
8581620fd73SBarry Smith 
859a9834a7dSSatish Balay    Synopsis:
860a9834a7dSSatish Balay      #include <petscmat.h>
861a9834a7dSSatish Balay      PetscErrorCode MatSetValue(Mat m,PetscInt row,PetscInt col,PetscScalar value,InsertMode mode)
862a9834a7dSSatish Balay 
8631620fd73SBarry Smith    Input Parameters:
8641620fd73SBarry Smith +  m - the matrix
8651620fd73SBarry Smith .  row - the row location of the entry
8661620fd73SBarry Smith .  col - the column location of the entry
8671620fd73SBarry Smith .  value - the value to insert
86887497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
8691620fd73SBarry Smith 
8701620fd73SBarry Smith    Notes:
87187497f52SBarry Smith    For efficiency one should use `MatSetValues()` and set several values simultaneously.
8721620fd73SBarry Smith 
8731620fd73SBarry Smith    Level: beginner
8741620fd73SBarry Smith 
875db781477SPatrick Sanan .seealso: `MatGetValue()`, `MatSetValues()`, `MatSetValueLocal()`, `MatSetValuesLocal()`
8761620fd73SBarry Smith M*/
877d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValue(Mat v, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
878d71ae5a4SJacob Faibussowitsch {
8799371c9d4SSatish Balay   return MatSetValues(v, 1, &i, 1, &j, &va, mode);
8809371c9d4SSatish Balay }
8811620fd73SBarry Smith 
882e5e5a7b5SPatrick Sanan /*@C
883e5e5a7b5SPatrick Sanan    MatGetValue - Gets a single value from a matrix
8841620fd73SBarry Smith 
885e5e5a7b5SPatrick Sanan    Not Collective; can only return a value owned by the given process
886e5e5a7b5SPatrick Sanan 
887e5e5a7b5SPatrick Sanan    Input Parameters:
888e5e5a7b5SPatrick Sanan +  mat - the matrix
889e5e5a7b5SPatrick Sanan .  row - the row location of the entry
890e5e5a7b5SPatrick Sanan -  col - the column location of the entry
891e5e5a7b5SPatrick Sanan 
892e5e5a7b5SPatrick Sanan    Output Parameter:
893e5e5a7b5SPatrick Sanan .  va - the value
894e5e5a7b5SPatrick Sanan 
895e5e5a7b5SPatrick Sanan    Notes:
89687497f52SBarry Smith    For efficiency one should use `MatGetValues()` and get several values simultaneously.
897e5e5a7b5SPatrick Sanan 
89887497f52SBarry Smith    See notes for `MatGetValues()`.
899e5e5a7b5SPatrick Sanan 
900e5e5a7b5SPatrick Sanan    Level: advanced
901e5e5a7b5SPatrick Sanan 
902db781477SPatrick Sanan .seealso: `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()`
903e5e5a7b5SPatrick Sanan @*/
904d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va)
905d71ae5a4SJacob Faibussowitsch {
9069371c9d4SSatish Balay   return MatGetValues(mat, 1, &row, 1, &col, va);
9079371c9d4SSatish Balay }
908e5e5a7b5SPatrick Sanan 
909e5e5a7b5SPatrick Sanan /*MC
910e5e5a7b5SPatrick Sanan    MatSetValueLocal - Inserts or adds a single value into a matrix,
911e5e5a7b5SPatrick Sanan    using a local numbering of the nodes.
912e5e5a7b5SPatrick Sanan 
913e5e5a7b5SPatrick Sanan    Not Collective
914e5e5a7b5SPatrick Sanan 
915e5e5a7b5SPatrick Sanan    Input Parameters:
916e5e5a7b5SPatrick Sanan +  m - the matrix
917e5e5a7b5SPatrick Sanan .  row - the row location of the entry
918e5e5a7b5SPatrick Sanan .  col - the column location of the entry
919e5e5a7b5SPatrick Sanan .  value - the value to insert
92087497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
921e5e5a7b5SPatrick Sanan 
922e5e5a7b5SPatrick Sanan    Notes:
92387497f52SBarry Smith    For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously.
924e5e5a7b5SPatrick Sanan 
92587497f52SBarry Smith    See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used.
926e5e5a7b5SPatrick Sanan 
927e5e5a7b5SPatrick Sanan    Level: intermediate
928e5e5a7b5SPatrick Sanan 
929db781477SPatrick Sanan .seealso: `MatSetValue()`, `MatSetValuesLocal()`
930e5e5a7b5SPatrick Sanan M*/
931d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValueLocal(Mat v, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
932d71ae5a4SJacob Faibussowitsch {
9339371c9d4SSatish Balay   return MatSetValuesLocal(v, 1, &i, 1, &j, &va, mode);
9349371c9d4SSatish Balay }
9351620fd73SBarry Smith 
9361620fd73SBarry Smith /*MC
937d0609cedSBarry Smith    MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per
938bd481603SBarry Smith        row in a matrix providing the data that one can use to correctly preallocate the matrix.
939bd481603SBarry Smith 
940bd481603SBarry Smith    Synopsis:
941aaa7dc30SBarry Smith    #include <petscmat.h>
942d0609cedSBarry Smith    PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz)
943bd481603SBarry Smith 
944d083f849SBarry Smith    Collective
945bd481603SBarry Smith 
946bd481603SBarry Smith    Input Parameters:
947bd481603SBarry Smith +  comm - the communicator that will share the eventually allocated matrix
948859fcb39SBarry Smith .  nrows - the number of LOCAL rows in the matrix
949859fcb39SBarry Smith -  ncols - the number of LOCAL columns in the matrix
950bd481603SBarry Smith 
951bd481603SBarry Smith    Output Parameters:
952bd481603SBarry Smith +  dnz - the array that will be passed to the matrix preallocation routines
953a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
954bd481603SBarry Smith 
955bd481603SBarry Smith    Level: intermediate
956bd481603SBarry Smith 
957bd481603SBarry Smith    Notes:
958d0609cedSBarry Smith     This is a macro that handles its own error checking, it does not return an error code.
959d0609cedSBarry Smith 
960a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
961bd481603SBarry Smith 
9621d73ed98SBarry Smith     Do not malloc or free dnz and onz, that is handled internally by these routines
963bd481603SBarry Smith 
964d0609cedSBarry Smith    Developer Notes:
9651620fd73SBarry Smith     This is a MACRO not a function because it has a leading { that is closed by PetscPreallocateFinalize().
9661620fd73SBarry Smith 
967db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
968db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
969bd481603SBarry Smith M*/
9709371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \
9719371c9d4SSatish Balay   do { \
9725f80ce2aSJacob Faibussowitsch     PetscInt __nrows = (nrows), __ncols = (ncols), __rstart, __start, __end = 0; \
9739566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \
9749566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \
9759371c9d4SSatish Balay     __start = __end - __ncols; \
9769371c9d4SSatish Balay     (void)__start; \
9779566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \
9785f80ce2aSJacob Faibussowitsch   __rstart -= __nrows
9797c922b88SBarry Smith 
980d0609cedSBarry Smith #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO("GCC warning \"Use MatPreallocateBegin() (since version 3.18)\"") MatPreallocateBegin(__VA_ARGS__)
981d0609cedSBarry Smith 
982bd481603SBarry Smith /*MC
983bd481603SBarry Smith    MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be
984bd481603SBarry Smith        inserted using a local number of the rows and columns
985bd481603SBarry Smith 
986bd481603SBarry Smith    Synopsis:
987aaa7dc30SBarry Smith    #include <petscmat.h>
988c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
989bd481603SBarry Smith 
990bd481603SBarry Smith    Not Collective
991bd481603SBarry Smith 
992bd481603SBarry Smith    Input Parameters:
993784ac674SJed Brown +  map - the row mapping from local numbering to global numbering
994bd481603SBarry Smith .  nrows - the number of rows indicated
9951d73ed98SBarry Smith .  rows - the indices of the rows
996784ac674SJed Brown .  cmap - the column mapping from local to global numbering
997bd481603SBarry Smith .  ncols - the number of columns in the matrix
998bd481603SBarry Smith .  cols - the columns indicated
999bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1000a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1001bd481603SBarry Smith 
1002bd481603SBarry Smith    Level: intermediate
1003bd481603SBarry Smith 
1004bd481603SBarry Smith    Notes:
1005a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
1006bd481603SBarry Smith 
10071d73ed98SBarry Smith    Do not malloc or free dnz and onz, that is handled internally by these routines
1008bd481603SBarry Smith 
1009db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1010db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()`
1011bd481603SBarry Smith M*/
101294bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
10139371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1014c4f061fbSSatish Balay 
1015bd481603SBarry Smith /*MC
1016c1154cd5SBarry Smith    MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1017c1154cd5SBarry Smith        inserted using a local number of the rows and columns. This version removes any duplicate columns in cols
1018c1154cd5SBarry Smith 
1019c1154cd5SBarry Smith    Synopsis:
1020c1154cd5SBarry Smith    #include <petscmat.h>
1021c1154cd5SBarry Smith    PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1022c1154cd5SBarry Smith 
1023c1154cd5SBarry Smith    Not Collective
1024c1154cd5SBarry Smith 
1025c1154cd5SBarry Smith    Input Parameters:
1026c1154cd5SBarry Smith +  map - the row mapping from local numbering to global numbering
1027c1154cd5SBarry Smith .  nrows - the number of rows indicated
1028c1154cd5SBarry Smith .  rows - the indices of the rows (these values are mapped to the global values)
1029c1154cd5SBarry Smith .  cmap - the column mapping from local to global numbering
1030c1154cd5SBarry Smith .  ncols - the number of columns in the matrix   (this value will be changed if duplicate columns are found)
1031c1154cd5SBarry Smith .  cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed)
1032c1154cd5SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1033a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1034c1154cd5SBarry Smith 
1035c1154cd5SBarry Smith    Level: intermediate
1036c1154cd5SBarry Smith 
1037c1154cd5SBarry Smith    Notes:
1038c1154cd5SBarry Smith     See Users-Manual: ch_performance for more details.
1039c1154cd5SBarry Smith 
1040c1154cd5SBarry Smith    Do not malloc or free dnz and onz, that is handled internally by these routines
1041c1154cd5SBarry Smith 
1042db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1043db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1044c1154cd5SBarry Smith M*/
104594bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
10469371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1047c1154cd5SBarry Smith 
1048c1154cd5SBarry Smith /*MC
1049d6e23781SBarry Smith    MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1050bd481603SBarry Smith        inserted using a local number of the rows and columns
1051bd481603SBarry Smith 
1052bd481603SBarry Smith    Synopsis:
1053aaa7dc30SBarry Smith    #include <petscmat.h>
1054d6e23781SBarry Smith    PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1055d6e23781SBarry Smith 
1056d6e23781SBarry Smith    Not Collective
1057d6e23781SBarry Smith 
1058d6e23781SBarry Smith    Input Parameters:
1059d6e23781SBarry Smith +  map - the row mapping from local numbering to global numbering
1060d6e23781SBarry Smith .  nrows - the number of rows indicated
1061d6e23781SBarry Smith .  rows - the indices of the rows
1062d6e23781SBarry Smith .  cmap - the column mapping from local to global numbering
1063d6e23781SBarry Smith .  ncols - the number of columns in the matrix
1064d6e23781SBarry Smith .  cols - the columns indicated
1065d6e23781SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1066a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1067d6e23781SBarry Smith 
1068d6e23781SBarry Smith    Level: intermediate
1069d6e23781SBarry Smith 
1070d6e23781SBarry Smith    Notes:
1071d6e23781SBarry Smith     See Users-Manual: ch_performance for more details.
1072d6e23781SBarry Smith 
1073d6e23781SBarry Smith    Do not malloc or free dnz and onz, that is handled internally by these routines
1074d6e23781SBarry Smith 
1075db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1076db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`
1077d6e23781SBarry Smith M*/
107894bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
10799371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1080d6e23781SBarry Smith 
1081d6e23781SBarry Smith /*MC
1082d6e23781SBarry Smith    MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1083d6e23781SBarry Smith        inserted using a local number of the rows and columns
1084d6e23781SBarry Smith 
1085d6e23781SBarry Smith    Synopsis:
1086d6e23781SBarry Smith    #include <petscmat.h>
1087d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1088bd481603SBarry Smith 
1089bd481603SBarry Smith    Not Collective
1090bd481603SBarry Smith 
1091bd481603SBarry Smith    Input Parameters:
1092bd481603SBarry Smith +  map - the mapping between local numbering and global numbering
1093bd481603SBarry Smith .  nrows - the number of rows indicated
10941d73ed98SBarry Smith .  rows - the indices of the rows
1095bd481603SBarry Smith .  ncols - the number of columns in the matrix
1096bd481603SBarry Smith .  cols - the columns indicated
1097bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1098a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1099bd481603SBarry Smith 
1100bd481603SBarry Smith    Level: intermediate
1101bd481603SBarry Smith 
1102bd481603SBarry Smith    Notes:
1103a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
1104bd481603SBarry Smith 
1105bd481603SBarry Smith    Do not malloc or free dnz and onz that is handled internally by these routines
1106bd481603SBarry Smith 
1107db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`
1108db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1109bd481603SBarry Smith M*/
111094bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \
11119371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));)
1112e83a5d19SLisandro Dalcin 
1113bd481603SBarry Smith /*MC
1114bd481603SBarry Smith    MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1115bd481603SBarry Smith        inserted using a local number of the rows and columns
1116bd481603SBarry Smith 
1117bd481603SBarry Smith    Synopsis:
1118aaa7dc30SBarry Smith    #include <petscmat.h>
1119c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1120bd481603SBarry Smith 
1121bd481603SBarry Smith    Not Collective
1122bd481603SBarry Smith 
1123bd481603SBarry Smith    Input Parameters:
112464075487SBarry Smith +  row - the row
1125bd481603SBarry Smith .  ncols - the number of columns in the matrix
1126a50f8bf6SHong Zhang -  cols - the columns indicated
1127a50f8bf6SHong Zhang 
1128a50f8bf6SHong Zhang    Output Parameters:
1129a50f8bf6SHong Zhang +  dnz - the array that will be passed to the matrix preallocation routines
1130a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1131bd481603SBarry Smith 
1132bd481603SBarry Smith    Level: intermediate
1133bd481603SBarry Smith 
1134bd481603SBarry Smith    Notes:
1135a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
1136bd481603SBarry Smith 
1137bd481603SBarry Smith    Do not malloc or free dnz and onz that is handled internally by these routines
1138bd481603SBarry Smith 
1139d0609cedSBarry Smith    This is a MACRO not a function because it uses variables declared in MatPreallocateBegin().
11401620fd73SBarry Smith 
1141db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1142db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1143bd481603SBarry Smith M*/
11449371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \
11459371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \
114664075487SBarry Smith     if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \
1147a6042fd4SStefano Zampini     else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
11489371c9d4SSatish Balay   })
11497c922b88SBarry Smith 
1150bd481603SBarry Smith /*MC
1151d6e23781SBarry Smith    MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1152bd481603SBarry Smith        inserted using a local number of the rows and columns
1153bd481603SBarry Smith 
1154bd481603SBarry Smith    Synopsis:
1155aaa7dc30SBarry Smith    #include <petscmat.h>
1156d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1157bd481603SBarry Smith 
1158bd481603SBarry Smith    Not Collective
1159bd481603SBarry Smith 
1160bd481603SBarry Smith    Input Parameters:
1161bd481603SBarry Smith +  nrows - the number of rows indicated
11621d73ed98SBarry Smith .  rows - the indices of the rows
1163bd481603SBarry Smith .  ncols - the number of columns in the matrix
1164bd481603SBarry Smith .  cols - the columns indicated
1165bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1166a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1167bd481603SBarry Smith 
1168bd481603SBarry Smith    Level: intermediate
1169bd481603SBarry Smith 
1170bd481603SBarry Smith    Notes:
1171a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
1172bd481603SBarry Smith 
1173bd481603SBarry Smith    Do not malloc or free dnz and onz that is handled internally by these routines
1174bd481603SBarry Smith 
1175d0609cedSBarry Smith    This is a MACRO not a function because it uses variables declared in MatPreallocateBegin().
11761620fd73SBarry Smith 
1177db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`,
1178db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1179bd481603SBarry Smith M*/
118094bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \
11819371c9d4SSatish Balay   PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \
1182d3d32019SBarry Smith     if (cols[__i] >= __end) onz[row - __rstart]++; \
1183a6042fd4SStefano Zampini     else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
11849371c9d4SSatish Balay   })
1185d3d32019SBarry Smith 
1186bd481603SBarry Smith /*MC
1187a6042fd4SStefano Zampini    MatPreallocateLocation -  An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists
118816371a99SBarry Smith 
118916371a99SBarry Smith    Synopsis:
1190aaa7dc30SBarry Smith    #include <petscmat.h>
119116371a99SBarry Smith    PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz)
119216371a99SBarry Smith 
119316371a99SBarry Smith    Not Collective
119416371a99SBarry Smith 
119516371a99SBarry Smith    Input Parameters:
1196a2b725a8SWilliam Gropp +  A - matrix
119716371a99SBarry Smith .  row - row where values exist (must be local to this process)
119816371a99SBarry Smith .  ncols - number of columns
119916371a99SBarry Smith .  cols - columns with nonzeros
120016371a99SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1201a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
120216371a99SBarry Smith 
120316371a99SBarry Smith    Level: intermediate
120416371a99SBarry Smith 
120516371a99SBarry Smith    Notes:
1206a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
120716371a99SBarry Smith 
120816371a99SBarry Smith    Do not malloc or free dnz and onz that is handled internally by these routines
120916371a99SBarry Smith 
121016371a99SBarry Smith    This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines.
121116371a99SBarry Smith 
1212db781477SPatrick Sanan .seealso: `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1213db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
121416371a99SBarry Smith M*/
1215d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz))
121616371a99SBarry Smith 
121716371a99SBarry Smith /*MC
1218d0609cedSBarry Smith    MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per
1219bd481603SBarry Smith        row in a matrix providing the data that one can use to correctly preallocate the matrix.
1220bd481603SBarry Smith 
1221bd481603SBarry Smith    Synopsis:
1222aaa7dc30SBarry Smith    #include <petscmat.h>
1223d0609cedSBarry Smith    PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz)
1224bd481603SBarry Smith 
1225d083f849SBarry Smith    Collective
1226bd481603SBarry Smith 
1227bd481603SBarry Smith    Input Parameters:
122816371a99SBarry Smith +  dnz - the array that was be passed to the matrix preallocation routines
1229a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1230bd481603SBarry Smith 
1231bd481603SBarry Smith    Level: intermediate
1232bd481603SBarry Smith 
1233bd481603SBarry Smith    Notes:
1234d0609cedSBarry Smith     This is a macro that handles its own error checking, it does not return an error code.
1235d0609cedSBarry Smith 
1236a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
1237bd481603SBarry Smith 
1238d0609cedSBarry Smith     Do not malloc or free dnz and onz, that is handled internally by these routines
1239bd481603SBarry Smith 
1240d0609cedSBarry Smith    Developer Notes:
1241d0609cedSBarry Smith     This is a MACRO not a function because it closes the { started in MatPreallocateBegin().
12421620fd73SBarry Smith 
1243db781477SPatrick Sanan .seealso: `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1244db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1245bd481603SBarry Smith M*/
12469371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \
12479371c9d4SSatish Balay   PetscCall(PetscFree2(dnz, onz)); \
12489371c9d4SSatish Balay   } \
12499371c9d4SSatish Balay   while (0)
1250d0609cedSBarry Smith 
1251d0609cedSBarry Smith #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO("GCC warning \"Use MatPreallocateEnd() (since version 3.18)\"") MatPreallocateEnd(__VA_ARGS__)
12527c922b88SBarry Smith 
12537b80b807SBarry Smith /* Routines unique to particular data structures */
1254014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *);
1255698d4c6aSKris Buschelman 
1256014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *);
1257014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *);
1258698d4c6aSKris Buschelman 
1259014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]);
1260014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]);
1261014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1262014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1263014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1264014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool);
12657b80b807SBarry Smith 
1266a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4
1267a96a251dSBarry Smith 
1268014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1269014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1270014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]);
127119b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt);
1272273d9f13SBarry Smith 
1273014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1274014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1275014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1276014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1277014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1278014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1279014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1280014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]);
1281b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *);
1282252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *);
1283014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]);
1284014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]);
12859230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
12869230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
1287014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *);
1288273d9f13SBarry Smith 
128949a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *);
1290ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt);
1291d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatDenseSetLDA() (since version 3.14)") static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda)
1292d71ae5a4SJacob Faibussowitsch {
12939371c9d4SSatish Balay   return MatDenseSetLDA(A, lda);
12949371c9d4SSatish Balay }
1295014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *);
12961b807ce4Svictorle 
1297621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1298621e819fSSatish Balay 
1299014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat);
1300014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat);
13012e8a6d31SBarry Smith 
1302014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *);
13037cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *);
13047b80b807SBarry Smith /*
13057b80b807SBarry Smith   These routines are not usually accessed directly, rather solving is
130694b7f48cSBarry Smith   done through the KSP and PC interfaces.
13077b80b807SBarry Smith */
13087b80b807SBarry Smith 
130976bdecfbSBarry Smith /*J
13108f6c3df8SBarry Smith     MatOrderingType - String with the name of a PETSc matrix ordering
1311d9274352SBarry Smith 
1312d9274352SBarry Smith    Level: beginner
1313d9274352SBarry Smith 
13142c7c0729SBarry Smith    Notes:
131587497f52SBarry Smith       If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and utilizes one built into the factorization package
13162c7c0729SBarry Smith 
1317db781477SPatrick Sanan .seealso: `MatGetOrdering()`
131876bdecfbSBarry Smith J*/
131919fd82e9SBarry Smith typedef const char *MatOrderingType;
13202692d6eeSBarry Smith #define MATORDERINGNATURAL       "natural"
13212692d6eeSBarry Smith #define MATORDERINGND            "nd"
13222692d6eeSBarry Smith #define MATORDERING1WD           "1wd"
13232692d6eeSBarry Smith #define MATORDERINGRCM           "rcm"
13242692d6eeSBarry Smith #define MATORDERINGQMD           "qmd"
13252692d6eeSBarry Smith #define MATORDERINGROWLENGTH     "rowlength"
1326510184a7SJed Brown #define MATORDERINGWBM           "wbm"
1327fc1bef75SJed Brown #define MATORDERINGSPECTRAL      "spectral"
1328312e372aSBarry Smith #define MATORDERINGAMD           "amd"           /* only works if UMFPACK is installed with PETSc */
1329048412efSPablo Brubeck #define MATORDERINGMETISND       "metisnd"       /* only works if METIS is installed with PETSc */
13309bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */
13312c7c0729SBarry Smith #define MATORDERINGEXTERNAL      "external"      /* uses an ordering type internal to the factorization package */
1332b12f92e5SBarry Smith 
133319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrdering(Mat, MatOrderingType, IS *, IS *);
1334140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrderingList(PetscFunctionList *);
1335bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode    MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *));
1336140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList;
1337d4fbbf0eSBarry Smith 
1338013e2dc7SBarry Smith #include "petscmatcoarsen.h"
1339013e2dc7SBarry Smith 
1340014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS);
1341fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *);
1342a2ce50c7SBarry Smith 
13434ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *);
13444ac6704cSBarry Smith 
1345d91e6319SBarry Smith /*S
1346ec5066bdSBarry Smith     MatFactorShiftType - Numeric Shift for factorizations
1347d90ac83dSHong Zhang 
1348d90ac83dSHong Zhang    Level: beginner
1349d90ac83dSHong Zhang 
1350db781477SPatrick Sanan .seealso: `MatGetFactor()`
1351d90ac83dSHong Zhang S*/
13529371c9d4SSatish Balay typedef enum {
13539371c9d4SSatish Balay   MAT_SHIFT_NONE,
13549371c9d4SSatish Balay   MAT_SHIFT_NONZERO,
13559371c9d4SSatish Balay   MAT_SHIFT_POSITIVE_DEFINITE,
13569371c9d4SSatish Balay   MAT_SHIFT_INBLOCKS
13579371c9d4SSatish Balay } MatFactorShiftType;
13586a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[];
13595e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[];
1360d90ac83dSHong Zhang 
1361d90ac83dSHong Zhang /*S
1362ec5066bdSBarry Smith     MatFactorError - indicates what type of error was generated in a matrix factorization
13639aa7eafdSHong Zhang 
13649aa7eafdSHong Zhang     Level: beginner
13659aa7eafdSHong Zhang 
136687497f52SBarry Smith     Developer Note:
136795452b02SPatrick Sanan     Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
136800e125f8SBarry Smith 
1369db781477SPatrick Sanan .seealso: `MatGetFactor()`
13709aa7eafdSHong Zhang S*/
13719371c9d4SSatish Balay typedef enum {
13729371c9d4SSatish Balay   MAT_FACTOR_NOERROR,
13739371c9d4SSatish Balay   MAT_FACTOR_STRUCT_ZEROPIVOT,
13749371c9d4SSatish Balay   MAT_FACTOR_NUMERIC_ZEROPIVOT,
13759371c9d4SSatish Balay   MAT_FACTOR_OUTMEMORY,
13769371c9d4SSatish Balay   MAT_FACTOR_OTHER
13779371c9d4SSatish Balay } MatFactorError;
13789aa7eafdSHong Zhang 
137900e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *);
1380b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat);
13817b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *);
138200e125f8SBarry Smith 
13839aa7eafdSHong Zhang /*S
1384422a814eSBarry Smith    MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization
1385b00f7748SHong Zhang 
138687497f52SBarry Smith    In Fortran these are simply double precision arrays of size `MAT_FACTORINFO_SIZE`, that is use
138761cad860SBarry Smith $     MatFactorInfo  info(MAT_FACTORINFO_SIZE)
1388b00f7748SHong Zhang 
138995452b02SPatrick Sanan    Notes:
139087497f52SBarry Smith     These are not usually directly used by users, instead use `PC` type of `PCLU`, `PCILU`, `PCCHOLESKY` or `PCICC`.
1391b00f7748SHong Zhang 
139287497f52SBarry Smith       You can use `MatFactorInfoInitialize()` to set default values.
139361cad860SBarry Smith 
1394b00f7748SHong Zhang    Level: developer
1395b00f7748SHong Zhang 
1396db781477SPatrick Sanan .seealso: `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, `MatICCFactorSymbolic()`, `MatICCFactor()`,
1397db781477SPatrick Sanan           `MatFactorInfoInitialize()`
1398b00f7748SHong Zhang 
1399b00f7748SHong Zhang S*/
1400b00f7748SHong Zhang typedef struct {
140115e8a5b3SHong Zhang   PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */
140285317021SBarry Smith   PetscReal usedt;
140315e8a5b3SHong Zhang   PetscReal dt;            /* drop tolerance */
1404b00f7748SHong Zhang   PetscReal dtcol;         /* tolerance for pivoting */
140515e8a5b3SHong Zhang   PetscReal dtcount;       /* maximum nonzeros to be allowed per row */
140667e28bfeSBarry Smith   PetscReal fill;          /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */
1407348344bbSBarry Smith   PetscReal levels;        /* ICC/ILU(levels) */
1408bcd9e38bSBarry Smith   PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0
1409bcd9e38bSBarry Smith                                    factorization may be faster if do not pivot */
141015e8a5b3SHong Zhang   PetscReal zeropivot;     /* pivot is called zero if less than this */
1411f4db908eSBarry Smith   PetscReal shifttype;     /* type of shift added to matrix factor to prevent zero pivots */
1412f4db908eSBarry Smith   PetscReal shiftamount;   /* how large the shift is */
141315e8a5b3SHong Zhang } MatFactorInfo;
1414ffa6d0a5SLois Curfman McInnes 
1415014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *);
14169a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *);
14179a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
14189a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *);
14199a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *);
14209a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *);
14219a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
14229a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
14239a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
14249a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *);
14259a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *);
14263f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *);
14273f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
14283f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *);
1429014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *);
1430014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec);
1431014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec);
1432014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec);
1433014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec);
1434014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec);
1435014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec);
1436014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs);
14377c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat);
14387c2f51b8SStefano Zampini 
14399371c9d4SSatish Balay typedef enum {
14409371c9d4SSatish Balay   MAT_FACTOR_SCHUR_UNFACTORED,
14419371c9d4SSatish Balay   MAT_FACTOR_SCHUR_FACTORED,
14429371c9d4SSatish Balay   MAT_FACTOR_SCHUR_INVERTED
14439371c9d4SSatish Balay } MatFactorSchurStatus;
14448e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS);
14457c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
14467c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus);
14475a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat);
14487c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
14495a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec);
14505a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec);
14516dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat);
1452bb5a7306SBarry Smith 
14538a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat);
1454d91e6319SBarry Smith /*E
1455d91e6319SBarry Smith     MatSORType - What type of (S)SOR to perform
1456bb1eb677SSatish Balay 
1457d91e6319SBarry Smith     Level: beginner
1458d91e6319SBarry Smith 
1459d9274352SBarry Smith    May be bitwise ORd together
1460d9274352SBarry Smith 
146187497f52SBarry Smith    Developer Notes:
1462af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
1463d91e6319SBarry Smith 
146487497f52SBarry Smith   `MatSORType` may be bitwise ORd together, so do not change the numerical values
14654e7234bfSBarry Smith 
1466db781477SPatrick Sanan .seealso: `MatSOR()`
1467d91e6319SBarry Smith E*/
14689371c9d4SSatish Balay typedef enum {
14699371c9d4SSatish Balay   SOR_FORWARD_SWEEP         = 1,
14709371c9d4SSatish Balay   SOR_BACKWARD_SWEEP        = 2,
14719371c9d4SSatish Balay   SOR_SYMMETRIC_SWEEP       = 3,
14729371c9d4SSatish Balay   SOR_LOCAL_FORWARD_SWEEP   = 4,
14739371c9d4SSatish Balay   SOR_LOCAL_BACKWARD_SWEEP  = 8,
14749371c9d4SSatish Balay   SOR_LOCAL_SYMMETRIC_SWEEP = 12,
14759371c9d4SSatish Balay   SOR_ZERO_INITIAL_GUESS    = 16,
14769371c9d4SSatish Balay   SOR_EISENSTAT             = 32,
14779371c9d4SSatish Balay   SOR_APPLY_UPPER           = 64,
14789371c9d4SSatish Balay   SOR_APPLY_LOWER           = 128
14799371c9d4SSatish Balay } MatSORType;
1480014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
14818ed539a5SBarry Smith 
14827086a01eSPeter Brune /*S
14837086a01eSPeter Brune      MatColoring - Object for managing the coloring of matrices.
14847086a01eSPeter Brune 
14857086a01eSPeter Brune    Level: beginner
14867086a01eSPeter Brune 
1487ec5066bdSBarry Smith     Notes:
148887497f52SBarry Smith        Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
148987497f52SBarry Smith        matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors).
1490ec5066bdSBarry Smith 
149187497f52SBarry Smith        Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This
1492ec5066bdSBarry Smith        same object can also be used to efficiently convert data created by Automatic Differentation tools to PETSc sparse matrices.
1493ec5066bdSBarry Smith 
1494db781477SPatrick Sanan .seealso: `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`, `MatOrdering`, `MatPartitioning`, `MatColoringType`
14957086a01eSPeter Brune S*/
1496d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring;
1497d4db15c4SBarry Smith 
1498d4db15c4SBarry Smith /*J
1499d4db15c4SBarry Smith     MatColoringType - String with the name of a PETSc matrix coloring
1500d9274352SBarry Smith 
1501d9274352SBarry Smith    Level: beginner
1502d9274352SBarry Smith 
1503db781477SPatrick Sanan .seealso: `MatColoringSetType()`, `MatColoring`
150476bdecfbSBarry Smith J*/
150519fd82e9SBarry Smith typedef const char *MatColoringType;
15065567d71aSPeter Brune #define MATCOLORINGJP      "jp"
1507b9acb617SPeter Brune #define MATCOLORINGPOWER   "power"
15082692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural"
15092692d6eeSBarry Smith #define MATCOLORINGSL      "sl"
15102692d6eeSBarry Smith #define MATCOLORINGLF      "lf"
15112692d6eeSBarry Smith #define MATCOLORINGID      "id"
15128121bdceSPeter Brune #define MATCOLORINGGREEDY  "greedy"
1513b12f92e5SBarry Smith 
15148ac6da0aSPeter Brune /*E
15158ac6da0aSPeter Brune    MatColoringWeightType - Type of weight scheme
15168ac6da0aSPeter Brune 
15178ac6da0aSPeter Brune     Not Collective
15188ac6da0aSPeter Brune 
151987497f52SBarry Smith +   `MAT_COLORING_RANDOM`  - Random weights
152087497f52SBarry Smith .   `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering.
152187497f52SBarry Smith -   `MAT_COLORING_LF`      - Last-first weighting.
15228ac6da0aSPeter Brune 
15238ac6da0aSPeter Brune     Level: intermediate
15248ac6da0aSPeter Brune 
152587497f52SBarry Smith    Developer Note:
1526af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
1527ec5066bdSBarry Smith 
1528db781477SPatrick Sanan .seealso: `MatColoring`, `MatColoringCreate()`
15298ac6da0aSPeter Brune E*/
15309371c9d4SSatish Balay typedef enum {
15319371c9d4SSatish Balay   MAT_COLORING_WEIGHT_RANDOM,
15329371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LEXICAL,
15339371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LF,
15349371c9d4SSatish Balay   MAT_COLORING_WEIGHT_SL
15359371c9d4SSatish Balay } MatColoringWeightType;
15368ac6da0aSPeter Brune 
1537335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *);
1538d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *);
1539335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *);
1540335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer);
1541335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType);
1542335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring);
1543335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt);
1544335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *);
1545335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt);
1546335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *);
1547335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *);
1548335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring));
1549014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *);
15508ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType);
1551c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *);
15528ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm);
1553bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring);
1554d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatColoringTest() (since version 3.10)") static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring)
1555d71ae5a4SJacob Faibussowitsch {
15569371c9d4SSatish Balay   return MatColoringTest(matcoloring, iscoloring);
15579371c9d4SSatish Balay }
1558bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring);
1559639f9d9dSBarry Smith 
1560d9274352SBarry Smith /*S
156187497f52SBarry Smith      MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring
1562639f9d9dSBarry Smith 
1563d9274352SBarry Smith    Level: beginner
1564d9274352SBarry Smith 
1565ec5066bdSBarry Smith    Notes:
156687497f52SBarry Smith       This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()`
1567ec5066bdSBarry Smith 
156887497f52SBarry Smith .seealso: `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()`
1569d9274352SBarry Smith S*/
1570e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring;
1571639f9d9dSBarry Smith 
1572014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *);
1573014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *);
1574014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer);
1575014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *);
1576014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **);
1577014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal);
1578014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring);
1579d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *);
1580014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec);
1581edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]);
1582f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring);
1583f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt);
1584bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *);
1585b1683b59SHong Zhang 
1586b1683b59SHong Zhang /*S
1587b9af6bddSHong Zhang      MatTransposeColoring - Object for computing a sparse matrix product C=A*B^T via coloring
1588b1683b59SHong Zhang 
1589b1683b59SHong Zhang    Level: beginner
1590b1683b59SHong Zhang 
1591db781477SPatrick Sanan .seealso: `MatTransposeColoringCreate()`
1592b1683b59SHong Zhang S*/
1593b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring;
1594b1683b59SHong Zhang 
1595014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *);
1596014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat);
1597014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat);
1598014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *);
1599b1683b59SHong Zhang 
1600d9274352SBarry Smith /*S
1601d9274352SBarry Smith      MatPartitioning - Object for managing the partitioning of a matrix or graph
1602d9274352SBarry Smith 
1603d9274352SBarry Smith    Level: beginner
1604d9274352SBarry Smith 
160587497f52SBarry Smith    Note:
160687497f52SBarry Smith      There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations
160787497f52SBarry Smith      via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`)
1608ec5066bdSBarry Smith 
1609ec5066bdSBarry Smith    Developers Note:
1610ec5066bdSBarry Smith      It is an extra maintainance and documentation cost to have two objects with the same functionality.
1611ec5066bdSBarry Smith 
1612db781477SPatrick Sanan .seealso: `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`
1613d9274352SBarry Smith S*/
161491e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning;
1615d9274352SBarry Smith 
161676bdecfbSBarry Smith /*J
16178f6c3df8SBarry Smith     MatPartitioningType - String with the name of a PETSc matrix partitioning
1618d9274352SBarry Smith 
1619d9274352SBarry Smith    Level: beginner
16200d04baf8SBarry Smith dm
162187497f52SBarry Smith .seealso: `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`
162276bdecfbSBarry Smith J*/
162319fd82e9SBarry Smith typedef const char *MatPartitioningType;
16242692d6eeSBarry Smith #define MATPARTITIONINGCURRENT  "current"
1625aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE  "average"
16262692d6eeSBarry Smith #define MATPARTITIONINGSQUARE   "square"
16272692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis"
16282692d6eeSBarry Smith #define MATPARTITIONINGCHACO    "chaco"
16292692d6eeSBarry Smith #define MATPARTITIONINGPARTY    "party"
163050d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch"
163188d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch"
163271306c60Sjroman 
1633014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *);
163419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType);
1635014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt);
1636014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat);
1637252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt);
1638014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]);
1639014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]);
1640ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool);
1641ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *);
1642014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *);
1643fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *);
1644668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS);
1645f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *);
1646014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *);
1647bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning));
1648014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer);
1649fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]);
1650014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning);
165119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *);
1652ca161407SBarry Smith 
165327538973SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part);
1654014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning);
1655014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *);
16560752156aSBarry Smith 
16579371c9d4SSatish Balay typedef enum {
16589371c9d4SSatish Balay   MP_CHACO_MULTILEVEL = 1,
16599371c9d4SSatish Balay   MP_CHACO_SPECTRAL   = 2,
16609371c9d4SSatish Balay   MP_CHACO_LINEAR     = 4,
16619371c9d4SSatish Balay   MP_CHACO_RANDOM     = 5,
16629371c9d4SSatish Balay   MP_CHACO_SCATTERED  = 6
16639371c9d4SSatish Balay } MPChacoGlobalType;
16646a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[];
16659371c9d4SSatish Balay typedef enum {
16669371c9d4SSatish Balay   MP_CHACO_KERNIGHAN = 1,
16679371c9d4SSatish Balay   MP_CHACO_NONE      = 2
16689371c9d4SSatish Balay } MPChacoLocalType;
16696a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[];
16709371c9d4SSatish Balay typedef enum {
16719371c9d4SSatish Balay   MP_CHACO_LANCZOS = 0,
16729371c9d4SSatish Balay   MP_CHACO_RQI     = 1
16739371c9d4SSatish Balay } MPChacoEigenType;
16746a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[];
1675b6956c12SJose Roman 
1676014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType);
1677014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *);
1678014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType);
1679014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *);
1680014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal);
1681014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType);
1682014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *);
1683014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal);
1684014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *);
1685014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt);
1686014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *);
168771306c60Sjroman 
168871306c60Sjroman #define MP_PARTY_OPT "opt"
168971306c60Sjroman #define MP_PARTY_LIN "lin"
169071306c60Sjroman #define MP_PARTY_SCA "sca"
169171306c60Sjroman #define MP_PARTY_RAN "ran"
169271306c60Sjroman #define MP_PARTY_GBF "gbf"
169371306c60Sjroman #define MP_PARTY_GCF "gcf"
169471306c60Sjroman #define MP_PARTY_BUB "bub"
169571306c60Sjroman #define MP_PARTY_DEF "def"
1696014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *);
169771306c60Sjroman #define MP_PARTY_HELPFUL_SETS  "hs"
169871306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl"
169971306c60Sjroman #define MP_PARTY_NONE          "no"
1700014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *);
1701014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal);
1702014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool);
1703014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool);
170471306c60Sjroman 
17059371c9d4SSatish Balay typedef enum {
17069371c9d4SSatish Balay   MP_PTSCOTCH_DEFAULT,
17079371c9d4SSatish Balay   MP_PTSCOTCH_QUALITY,
17089371c9d4SSatish Balay   MP_PTSCOTCH_SPEED,
17099371c9d4SSatish Balay   MP_PTSCOTCH_BALANCE,
17109371c9d4SSatish Balay   MP_PTSCOTCH_SAFETY,
17119371c9d4SSatish Balay   MP_PTSCOTCH_SCALABILITY
17129371c9d4SSatish Balay } MPPTScotchStrategyType;
17136a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[];
1714e0f1cffaSJose Roman 
1715014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal);
1716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *);
1717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType);
1718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *);
171971306c60Sjroman 
1720b43b03e9SMark F. Adams /*
17216294fa2bSFande Kong  * hierarchical partitioning
17226294fa2bSFande Kong  */
17234e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *);
17244e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *);
17254e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt);
17264e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt);
17276294fa2bSFande Kong 
1728014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *);
1729591294e4SBarry Smith 
17300752156aSBarry Smith /*
1731c786d857SStefano Zampini     If you add entries here you must also add them to src/mat/f90-mod/petscmat.h
1732c786d857SStefano Zampini     If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx
1733d4fbbf0eSBarry Smith */
17349371c9d4SSatish Balay typedef enum {
17359371c9d4SSatish Balay   MATOP_SET_VALUES               = 0,
17361c1c02c0SLois Curfman McInnes   MATOP_GET_ROW                  = 1,
17371c1c02c0SLois Curfman McInnes   MATOP_RESTORE_ROW              = 2,
17381c1c02c0SLois Curfman McInnes   MATOP_MULT                     = 3,
17391c1c02c0SLois Curfman McInnes   MATOP_MULT_ADD                 = 4,
17407c922b88SBarry Smith   MATOP_MULT_TRANSPOSE           = 5,
17417c922b88SBarry Smith   MATOP_MULT_TRANSPOSE_ADD       = 6,
17421c1c02c0SLois Curfman McInnes   MATOP_SOLVE                    = 7,
17431c1c02c0SLois Curfman McInnes   MATOP_SOLVE_ADD                = 8,
17447c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE          = 9,
17457c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE_ADD      = 10,
17461c1c02c0SLois Curfman McInnes   MATOP_LUFACTOR                 = 11,
17471c1c02c0SLois Curfman McInnes   MATOP_CHOLESKYFACTOR           = 12,
1748a714c06dSBarry Smith   MATOP_SOR                      = 13,
17491c1c02c0SLois Curfman McInnes   MATOP_TRANSPOSE                = 14,
17501c1c02c0SLois Curfman McInnes   MATOP_GETINFO                  = 15,
17511c1c02c0SLois Curfman McInnes   MATOP_EQUAL                    = 16,
17521c1c02c0SLois Curfman McInnes   MATOP_GET_DIAGONAL             = 17,
17531c1c02c0SLois Curfman McInnes   MATOP_DIAGONAL_SCALE           = 18,
17541c1c02c0SLois Curfman McInnes   MATOP_NORM                     = 19,
17551c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_BEGIN           = 20,
17561c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_END             = 21,
1757d519adbfSMatthew Knepley   MATOP_SET_OPTION               = 22,
1758d519adbfSMatthew Knepley   MATOP_ZERO_ENTRIES             = 23,
1759d519adbfSMatthew Knepley   MATOP_ZERO_ROWS                = 24,
1760d519adbfSMatthew Knepley   MATOP_LUFACTOR_SYMBOLIC        = 25,
1761d519adbfSMatthew Knepley   MATOP_LUFACTOR_NUMERIC         = 26,
1762d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27,
1763d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_NUMERIC  = 28,
1764e5f2d425SStefano Zampini   MATOP_SETUP                    = 29,
1765d519adbfSMatthew Knepley   MATOP_ILUFACTOR_SYMBOLIC       = 30,
1766d519adbfSMatthew Knepley   MATOP_ICCFACTOR_SYMBOLIC       = 31,
1767a5b7ff6bSBarry Smith   MATOP_GET_DIAGONAL_BLOCK       = 32,
1768e5f2d425SStefano Zampini   MATOP_SET_INF                  = 33,
1769d519adbfSMatthew Knepley   MATOP_DUPLICATE                = 34,
1770d519adbfSMatthew Knepley   MATOP_FORWARD_SOLVE            = 35,
1771d519adbfSMatthew Knepley   MATOP_BACKWARD_SOLVE           = 36,
1772d519adbfSMatthew Knepley   MATOP_ILUFACTOR                = 37,
1773d519adbfSMatthew Knepley   MATOP_ICCFACTOR                = 38,
1774d519adbfSMatthew Knepley   MATOP_AXPY                     = 39,
17757dae84e0SHong Zhang   MATOP_CREATE_SUBMATRICES       = 40,
1776d519adbfSMatthew Knepley   MATOP_INCREASE_OVERLAP         = 41,
1777d519adbfSMatthew Knepley   MATOP_GET_VALUES               = 42,
1778d519adbfSMatthew Knepley   MATOP_COPY                     = 43,
1779d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX              = 44,
1780d519adbfSMatthew Knepley   MATOP_SCALE                    = 45,
1781d519adbfSMatthew Knepley   MATOP_SHIFT                    = 46,
178235153367SBarry Smith   MATOP_DIAGONAL_SET             = 47,
17839d39f69dSJed Brown   MATOP_ZERO_ROWS_COLUMNS        = 48,
17849d39f69dSJed Brown   MATOP_SET_RANDOM               = 49,
1785d519adbfSMatthew Knepley   MATOP_GET_ROW_IJ               = 50,
1786d519adbfSMatthew Knepley   MATOP_RESTORE_ROW_IJ           = 51,
1787d519adbfSMatthew Knepley   MATOP_GET_COLUMN_IJ            = 52,
1788d519adbfSMatthew Knepley   MATOP_RESTORE_COLUMN_IJ        = 53,
1789d519adbfSMatthew Knepley   MATOP_FDCOLORING_CREATE        = 54,
1790d519adbfSMatthew Knepley   MATOP_COLORING_PATCH           = 55,
1791d519adbfSMatthew Knepley   MATOP_SET_UNFACTORED           = 56,
1792d519adbfSMatthew Knepley   MATOP_PERMUTE                  = 57,
1793d519adbfSMatthew Knepley   MATOP_SET_VALUES_BLOCKED       = 58,
17947dae84e0SHong Zhang   MATOP_CREATE_SUBMATRIX         = 59,
1795d519adbfSMatthew Knepley   MATOP_DESTROY                  = 60,
1796d519adbfSMatthew Knepley   MATOP_VIEW                     = 61,
1797d519adbfSMatthew Knepley   MATOP_CONVERT_FROM             = 62,
1798e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_63=63 */
17997bab7c10SHong Zhang   MATOP_MATMAT_MULT_SYMBOLIC    = 64,
18007bab7c10SHong Zhang   MATOP_MATMAT_MULT_NUMERIC     = 65,
1801d519adbfSMatthew Knepley   MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66,
1802d519adbfSMatthew Knepley   MATOP_SET_VALUES_LOCAL        = 67,
1803d519adbfSMatthew Knepley   MATOP_ZERO_ROWS_LOCAL         = 68,
1804d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX_ABS         = 69,
1805d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN_ABS         = 70,
1806d519adbfSMatthew Knepley   MATOP_CONVERT                 = 71,
1807e5f2d425SStefano Zampini   MATOP_HAS_OPERATION           = 72,
18089d39f69dSJed Brown   /* MATOP_PLACEHOLDER_73=73, */
1809d519adbfSMatthew Knepley   MATOP_SET_VALUES_ADIFOR = 74,
1810d519adbfSMatthew Knepley   MATOP_FD_COLORING_APPLY = 75,
1811d519adbfSMatthew Knepley   MATOP_SET_FROM_OPTIONS  = 76,
1812e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_77=77, */
1813e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_78=78, */
18149d39f69dSJed Brown   MATOP_FIND_ZERO_DIAGONALS       = 79,
1815d519adbfSMatthew Knepley   MATOP_MULT_MULTIPLE             = 80,
1816d519adbfSMatthew Knepley   MATOP_SOLVE_MULTIPLE            = 81,
1817d519adbfSMatthew Knepley   MATOP_GET_INERTIA               = 82,
1818d519adbfSMatthew Knepley   MATOP_LOAD                      = 83,
1819d519adbfSMatthew Knepley   MATOP_IS_SYMMETRIC              = 84,
1820d519adbfSMatthew Knepley   MATOP_IS_HERMITIAN              = 85,
1821d519adbfSMatthew Knepley   MATOP_IS_STRUCTURALLY_SYMMETRIC = 86,
1822820469bcSHong Zhang   MATOP_SET_VALUES_BLOCKEDLOCAL   = 87,
1823b41ce5d5SBarry Smith   MATOP_CREATE_VECS               = 88,
1824e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_89=89, */
1825d519adbfSMatthew Knepley   MATOP_MAT_MULT_SYMBOLIC = 90,
1826d519adbfSMatthew Knepley   MATOP_MAT_MULT_NUMERIC  = 91,
1827e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_92=92, */
1828d519adbfSMatthew Knepley   MATOP_PTAP_SYMBOLIC = 93,
1829d519adbfSMatthew Knepley   MATOP_PTAP_NUMERIC  = 94,
1830e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_95=95, */
1831bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96,
1832bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_NUMER = 97,
1833e5f2d425SStefano Zampini   MATOP_BIND_TO_CPU              = 98,
18347a3c3d58SStefano Zampini   MATOP_PRODUCTSETFROMOPTIONS    = 99,
18357a3c3d58SStefano Zampini   MATOP_PRODUCTSYMBOLIC          = 100,
18367a3c3d58SStefano Zampini   MATOP_PRODUCTNUMERIC           = 101,
1837d519adbfSMatthew Knepley   MATOP_CONJUGATE                = 102,
1838e5f2d425SStefano Zampini   MATOP_VIEW_NATIVE              = 103,
1839d519adbfSMatthew Knepley   MATOP_SET_VALUES_ROW           = 104,
1840d519adbfSMatthew Knepley   MATOP_REAL_PART                = 105,
1841bda6c4cbSBarry Smith   MATOP_IMAGINARY_PART           = 106,
1842bda6c4cbSBarry Smith   MATOP_GET_ROW_UPPER_TRIANGULAR = 107,
1843bda6c4cbSBarry Smith   MATOP_RESTORE_ROW_UPPER_TRIANG = 108,
1844bda6c4cbSBarry Smith   MATOP_MAT_SOLVE                = 109,
184529eadf9eSStefano Zampini   MATOP_MAT_SOLVE_TRANSPOSE      = 110,
1846d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN              = 111,
18470e8d04f7SBarry Smith   MATOP_GET_COLUMN_VECTOR        = 112,
1848d519adbfSMatthew Knepley   MATOP_MISSING_DIAGONAL         = 113,
18490e8d04f7SBarry Smith   MATOP_GET_SEQ_NONZERO_STRUCTUR = 114,
185089c6957cSBarry Smith   MATOP_CREATE                   = 115,
185189c6957cSBarry Smith   MATOP_GET_GHOSTS               = 116,
18520e8d04f7SBarry Smith   MATOP_GET_LOCAL_SUB_MATRIX     = 117,
18530e8d04f7SBarry Smith   MATOP_RESTORE_LOCALSUB_MATRIX  = 118,
1854eeffb40dSHong Zhang   MATOP_MULT_DIAGONAL_BLOCK      = 119,
18550e8d04f7SBarry Smith   MATOP_HERMITIAN_TRANSPOSE      = 120,
18560e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANSPOSE = 121,
18570e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANS_ADD = 122,
18580e8d04f7SBarry Smith   MATOP_GET_MULTI_PROC_BLOCK     = 123,
18599d39f69dSJed Brown   MATOP_FIND_NONZERO_ROWS        = 124,
18600e8d04f7SBarry Smith   MATOP_GET_COLUMN_NORMS         = 125,
18619d39f69dSJed Brown   MATOP_INVERT_BLOCK_DIAGONAL    = 126,
1862e5f2d425SStefano Zampini   MATOP_INVERT_VBLOCK_DIAGONAL   = 127,
1863b41ce5d5SBarry Smith   MATOP_CREATE_SUB_MATRICES_MPI  = 128,
18642b8ad9a3SHong Zhang   MATOP_SET_VALUES_BATCH         = 129,
1865e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_130=130, */
18660e8d04f7SBarry Smith   MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131,
1867e9b602ebSSatish Balay   MATOP_TRANSPOSE_MAT_MULT_NUMER = 132,
18680e8d04f7SBarry Smith   MATOP_TRANSPOSE_COLORING_CREAT = 133,
18690e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_SPT = 134,
18700e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_DEN = 135,
1871e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_136=136, */
18720e8d04f7SBarry Smith   MATOP_RART_SYMBOLIC         = 137,
18730e8d04f7SBarry Smith   MATOP_RART_NUMERIC          = 138,
1874e09a3074SHong Zhang   MATOP_SET_BLOCK_SIZES       = 139,
1875f9426fe0SMark Adams   MATOP_AYPX                  = 140,
18761919a2e2SJed Brown   MATOP_RESIDUAL              = 141,
18779c8f2541SHong Zhang   MATOP_FDCOLORING_SETUP      = 142,
1878e5f2d425SStefano Zampini   MATOP_FIND_OFFBLOCK_ENTRIES = 143,
18792d033e1fSHong Zhang   MATOP_MPICONCATENATESEQ     = 144,
1880bb01b7b0SPatrick Sanan   MATOP_DESTROYSUBMATRICES    = 145,
1881e265f6d6SPatrick Sanan   MATOP_TRANSPOSE_SOLVE       = 146,
1882e265f6d6SPatrick Sanan   MATOP_GET_VALUES_LOCAL      = 147
1883fae171e0SBarry Smith } MatOperation;
18840c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void));
1885976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void));
1886976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *);
188794342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *);
1888d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatProductClear() (since version 3.14)") static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A)
1889d71ae5a4SJacob Faibussowitsch {
18909371c9d4SSatish Balay   return MatProductClear(A);
18919371c9d4SSatish Balay }
1892014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void));
1893014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void));
1894014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *);
1895800f99ffSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *));
1896db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType);
1897f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
1898f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
18990c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat);
1900b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType);
1901b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *);
1902112a2221SBarry Smith 
190390ace30eSBarry Smith /*
190490ace30eSBarry Smith    Codes for matrices stored on disk. By default they are
190590ace30eSBarry Smith    stored in a universal format. By changing the format with
19066a9046bcSBarry Smith    PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will
190790ace30eSBarry Smith    be stored in a way natural for the matrix, for example dense matrices
190890ace30eSBarry Smith    would be stored as dense. Matrices stored this way may only be
1909f4403165SShri Abhyankar    read into matrices of the same type.
191090ace30eSBarry Smith */
191190ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1
191290ace30eSBarry Smith 
1913014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal);
191475d48cdbSStefano Zampini 
19158546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType);
191675d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
191775d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool);
1918f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool);
1919014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *);
19203b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *);
1921014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat);
1922e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
192325ef9dfeSBarry Smith PETSC_EXTERN                PETSC_DEPRECATED_FUNCTION("Use the MatConvert() interface (since version 3.10)") PetscErrorCode MatISGetMPIXAIJ(Mat, MatReuse, Mat *);
19241f4e1ec7SBarry Smith 
1925d9274352SBarry Smith /*S
1926d9274352SBarry Smith      MatNullSpace - Object that removes a null space from a vector, i.e.
1927cb6b9846SMatthew Knepley          orthogonalizes the vector to a subspace
1928d9274352SBarry Smith 
1929f7a9e4ceSBarry Smith    Level: advanced
1930d9274352SBarry Smith 
193187497f52SBarry Smith .seealso: `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()`
1932d9274352SBarry Smith S*/
193374637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace;
1934d9274352SBarry Smith 
1935014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *);
1936014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *);
1937014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *);
1938d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec);
1939014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *);
19405fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *);
19415fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace);
1942014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace);
1943014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace);
1944014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *);
1945014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *);
1946014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer);
1947014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **);
1948014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *);
194974637425SBarry Smith 
1950014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS);
1951014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal);
1952014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *);
19533f1d51d7SBarry Smith 
1954014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *);
1955014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *);
1956014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *);
1957c4f061fbSSatish Balay 
19580bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *);
19590bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *);
19600bacdadaSStefano Zampini 
1961d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatComputeOperator() (since version 3.12)") static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B)
1962d71ae5a4SJacob Faibussowitsch {
19639371c9d4SSatish Balay   return MatComputeOperator(A, NULL, B);
19649371c9d4SSatish Balay }
1965d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatComputeOperatorTranspose() (since version 3.12)") static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B)
1966d71ae5a4SJacob Faibussowitsch {
19679371c9d4SSatish Balay   return MatComputeOperatorTranspose(A, NULL, B);
19689371c9d4SSatish Balay }
1969b0a32e0cSBarry Smith 
197049bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *);
197149bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *);
1972a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **);
1973a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
1974a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **);
1975a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **);
1976a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **);
1977a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
1978a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **);
1979a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **);
1980dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat);
1981dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]);
1982dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]);
1983910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *);
198449bd79ccSDebojyoti Ghosh 
1985014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec);
198604f1ad80SBarry Smith 
1987014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
1988014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec);
1989014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *);
1990014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *));
1991014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec));
1992014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt);
1993014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat);
1994014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal);
1995014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt);
1996014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *);
1997014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]);
1998014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *);
1999014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *);
2000e884886fSBarry Smith 
20016370053bSBarry Smith /*S
20026370053bSBarry Smith     MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free
20036370053bSBarry Smith               Jacobian vector products
2004e884886fSBarry Smith 
200595452b02SPatrick Sanan     Notes:
200687497f52SBarry Smith     `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure
20076370053bSBarry Smith 
200887497f52SBarry Smith     MatMFFD*() methods actually take the Mat as their first argument. Not a `MatMFFD` data structure
20096370053bSBarry Smith 
20106370053bSBarry Smith     Level: developer
20116370053bSBarry Smith 
2012db781477SPatrick Sanan .seealso: `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`
20136370053bSBarry Smith S*/
2014e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD;
2015e884886fSBarry Smith 
201676bdecfbSBarry Smith /*J
2017e884886fSBarry Smith     MatMFFDType - algorithm used to compute the h used in computing matrix-vector products via differencing of the function
2018e884886fSBarry Smith 
2019e884886fSBarry Smith    Level: beginner
2020e884886fSBarry Smith 
2021db781477SPatrick Sanan .seealso: `MatMFFDSetType()`, `MatMFFDRegister()`
202276bdecfbSBarry Smith J*/
202319fd82e9SBarry Smith typedef const char *MatMFFDType;
2024e884886fSBarry Smith #define MATMFFD_DS "ds"
2025e884886fSBarry Smith #define MATMFFD_WP "wp"
2026e884886fSBarry Smith 
202719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType);
2028bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD));
2029e884886fSBarry Smith 
2030014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal);
2031014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool);
2032e884886fSBarry Smith 
203361ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType);
203461ab5df0SBarry Smith 
2035014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *);
2036014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *);
20377dbadf16SMatthew Knepley 
203853022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS
203953022affSStefano Zampini PETSC_EXTERN_TYPEDEF typedef PetscScalar (*MatH2OpusKernel)(PetscInt, PetscReal[], PetscReal[], void *);
204053022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernel, void *, PetscReal, PetscInt, PetscInt, Mat *);
204153022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *);
204253022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal);
204353022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat);
204453022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal);
204553022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool);
204653022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *);
204753022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *);
204853022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *);
2049300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar);
2050a0d2e7d8SStefano Zampini #endif
2051a0d2e7d8SStefano Zampini 
2052c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL
205398e73e17SPierre Jolivet PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatHtoolKernel)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *);
2054c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernel, void *, Mat *);
2055c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernel, void *);
205698e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *);
205798e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *);
205898e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool);
2059c7a4214aSPierre Jolivet /*E
206087497f52SBarry Smith      MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL`
2061c7a4214aSPierre Jolivet 
2062c7a4214aSPierre Jolivet    Level: beginner
2063c7a4214aSPierre Jolivet 
2064c7a4214aSPierre Jolivet     Values:
206587497f52SBarry Smith +   `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation
206687497f52SBarry Smith .   `MAT_HTOOL_COMPRESSOR_FULL_ACA` - full adaptive cross approximation
206787497f52SBarry Smith -   `MAT_HTOOL_COMPRESSOR_SVD` - singular value decomposition
2068c7a4214aSPierre Jolivet 
2069db781477SPatrick Sanan .seealso: `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType`
2070c7a4214aSPierre Jolivet E*/
20719371c9d4SSatish Balay typedef enum {
20729371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA,
20739371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_FULL_ACA,
20749371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SVD
20759371c9d4SSatish Balay } MatHtoolCompressorType;
207698e73e17SPierre Jolivet /*E
207787497f52SBarry Smith      MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL`
207898e73e17SPierre Jolivet 
207998e73e17SPierre Jolivet    Level: beginner
208098e73e17SPierre Jolivet 
208198e73e17SPierre Jolivet     Values:
208287497f52SBarry Smith +   `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default) - axis computed via principle component analysis, split uniformly
208387497f52SBarry Smith .   `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC` - axis computed via principle component analysis, split barycentrically
208487497f52SBarry Smith .   `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR` - axis along the largest extent of the bounding box, split uniformly
208587497f52SBarry Smith -   `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically
208698e73e17SPierre Jolivet 
208798e73e17SPierre Jolivet     Notes: higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types
208898e73e17SPierre Jolivet 
2089db781477SPatrick Sanan .seealso: `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType`
209098e73e17SPierre Jolivet E*/
20919371c9d4SSatish Balay typedef enum {
20929371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_REGULAR,
20939371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC,
20949371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR,
20959371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC
20969371c9d4SSatish Balay } MatHtoolClusteringType;
2097c7a4214aSPierre Jolivet #endif
2098c7a4214aSPierre Jolivet 
209997969023SHong Zhang #ifdef PETSC_HAVE_MUMPS
2100014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt);
2101bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *);
2102b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal);
2103bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *);
2104bc6112feSHong Zhang 
2105ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *);
2106ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *);
2107ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *);
2108ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *);
210989a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat);
21100e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat);
211197969023SHong Zhang #endif
211223a5497aSJed Brown 
2113b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO
2114d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt);
2115b500a6b7SJose David Bermeol #endif
2116b500a6b7SJose David Bermeol 
2117d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO
2118d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt);
2119d305a81bSVasiliy Kozyrev #endif
2120d305a81bSVasiliy Kozyrev 
2121d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU
2122014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal);
2123d954db57SHong Zhang #endif
2124d954db57SHong Zhang 
2125fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST
2126fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *);
2127fb785984SHong Zhang #endif
2128fb785984SHong Zhang 
2129575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK
2130542aee0fSPieter Ghysels /*E
213187497f52SBarry Smith     MatSTRUMPACKReordering - sparsity reducing ordering to be used in `STRUMPACK`
2132542aee0fSPieter Ghysels 
2133542aee0fSPieter Ghysels     Level: intermediate
2134542aee0fSPieter Ghysels E*/
21359371c9d4SSatish Balay typedef enum {
21369371c9d4SSatish Balay   MAT_STRUMPACK_NATURAL  = 0,
213734f43fa5SPieter Ghysels   MAT_STRUMPACK_METIS    = 1,
213834f43fa5SPieter Ghysels   MAT_STRUMPACK_PARMETIS = 2,
213934f43fa5SPieter Ghysels   MAT_STRUMPACK_SCOTCH   = 3,
214034f43fa5SPieter Ghysels   MAT_STRUMPACK_PTSCOTCH = 4,
21419371c9d4SSatish Balay   MAT_STRUMPACK_RCM      = 5
21429371c9d4SSatish Balay } MatSTRUMPACKReordering;
214334f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering);
2144575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool);
214534f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSRelTol(Mat, PetscReal);
2146d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSTRUMPACKSetHSSRelTol() (since version 3.9)") static inline PetscErrorCode MatSTRUMPACKSetHSSRelCompTol(Mat mat, PetscReal rtol)
2147d71ae5a4SJacob Faibussowitsch {
21489371c9d4SSatish Balay   return MatSTRUMPACKSetHSSRelTol(mat, rtol);
21499371c9d4SSatish Balay }
215034f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSAbsTol(Mat, PetscReal);
215134f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMinSepSize(Mat, PetscInt);
2152d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSTRUMPACKSetHSSMinSepSize() (since version 3.9)") static inline PetscErrorCode MatSTRUMPACKSetHSSMinSize(Mat mat, PetscInt hssminsize)
2153d71ae5a4SJacob Faibussowitsch {
21549371c9d4SSatish Balay   return MatSTRUMPACKSetHSSMinSepSize(mat, hssminsize);
21559371c9d4SSatish Balay }
215634f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMaxRank(Mat, PetscInt);
2157a36bf211SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSLeafSize(Mat, PetscInt);
2158575704cbSPieter Ghysels #endif
2159575704cbSPieter Ghysels 
2160b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool);
21612216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *);
2162d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatBindToCPU (since v3.13)") static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg)
2163d71ae5a4SJacob Faibussowitsch {
21649371c9d4SSatish Balay   return MatBindToCPU(A, flg);
21659371c9d4SSatish Balay }
216665a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool);
2167e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *);
2168e7e92044SBarry Smith 
2169042217e8SBarry Smith typedef struct _n_SplitCSRMat *PetscSplitCSRDataStructure;
2170042217e8SBarry Smith PETSC_EXTERN PetscErrorCode    MatCUSPARSEGetDeviceMatWrite(Mat, PetscSplitCSRDataStructure *);
2171a587d139SMark 
2172a587d139SMark #ifdef PETSC_HAVE_KOKKOS_KERNELS
2173042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatKokkosGetDeviceMatWrite(Mat, PetscSplitCSRDataStructure *);
2174042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJKokkosSetDeviceMat(Mat, PetscSplitCSRDataStructure);
2175042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJKokkosGetDeviceMat(Mat, PetscSplitCSRDataStructure *);
2176a587d139SMark #endif
2177a587d139SMark 
2178aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA
21793f9c0db1SPaul Mullowney /*E
2180e057df02SPaul Mullowney     MatCUSPARSEStorageFormat - indicates the storage format for CUSPARSE (GPU)
21812692e278SPaul Mullowney     matrices.
2182e057df02SPaul Mullowney 
2183e057df02SPaul Mullowney     Not Collective
2184e057df02SPaul Mullowney 
218587497f52SBarry Smith +   `MAT_CUSPARSE_CSR` - Compressed Sparse Row
218687497f52SBarry Smith .   `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later).
218787497f52SBarry Smith -   `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later).
2188e057df02SPaul Mullowney 
2189e057df02SPaul Mullowney     Level: intermediate
2190e057df02SPaul Mullowney 
219187497f52SBarry Smith    Developer Note:
2192af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
2193e057df02SPaul Mullowney 
2194db781477SPatrick Sanan .seealso: `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation`
2195e057df02SPaul Mullowney E*/
2196e057df02SPaul Mullowney 
21979371c9d4SSatish Balay typedef enum {
21989371c9d4SSatish Balay   MAT_CUSPARSE_CSR,
21999371c9d4SSatish Balay   MAT_CUSPARSE_ELL,
22009371c9d4SSatish Balay   MAT_CUSPARSE_HYB
22019371c9d4SSatish Balay } MatCUSPARSEStorageFormat;
2202e057df02SPaul Mullowney 
2203e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */
2204e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[];
2205e057df02SPaul Mullowney 
22063f9c0db1SPaul Mullowney /*E
2207e057df02SPaul Mullowney     MatCUSPARSEFormatOperation - indicates the operation of CUSPARSE (GPU)
22082692e278SPaul Mullowney     matrices whose operation should use a particular storage format.
2209e057df02SPaul Mullowney 
2210e057df02SPaul Mullowney     Not Collective
2211e057df02SPaul Mullowney 
221287497f52SBarry Smith +   `MAT_CUSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel MatMult
221387497f52SBarry Smith .   `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel MatMult
221487497f52SBarry Smith .   `MAT_CUSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) MatMult
221587497f52SBarry Smith -   `MAT_CUSPARSE_ALL` - sets the storage format for all CUSPARSE (GPU) matrices
2216e057df02SPaul Mullowney 
2217e057df02SPaul Mullowney     Level: intermediate
2218e057df02SPaul Mullowney 
2219db781477SPatrick Sanan .seealso: `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat`
2220e057df02SPaul Mullowney E*/
22219371c9d4SSatish Balay typedef enum {
22229371c9d4SSatish Balay   MAT_CUSPARSE_MULT_DIAG,
22239371c9d4SSatish Balay   MAT_CUSPARSE_MULT_OFFDIAG,
22249371c9d4SSatish Balay   MAT_CUSPARSE_MULT,
22259371c9d4SSatish Balay   MAT_CUSPARSE_ALL
22269371c9d4SSatish Balay } MatCUSPARSEFormatOperation;
2227e057df02SPaul Mullowney 
222810e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode                  MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
222910e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode                  MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2230e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode                  MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat);
2231365b711fSMark Adams PETSC_EXTERN PetscErrorCode                  MatCUSPARSESetUseCPUSolve(Mat, PetscBool);
2232e8d2b73aSMark Adams typedef struct Mat_SeqAIJCUSPARSETriFactors *Mat_SeqAIJCUSPARSETriFactors_p;
22335f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode                  MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
22345f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode                  MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
22355f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode                  MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **);
22365f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode                  MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **);
22375f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode                  MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **);
22385f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode                  MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **);
22395f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode                  MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **);
22405f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode                  MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **);
2241637a0070SStefano Zampini 
2242637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
2243637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
2244637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat, PetscScalar[]);
2245637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqDenseCUDASetPreallocation(Mat, PetscScalar[]);
2246637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **);
2247637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **);
2248637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **);
2249637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **);
2250637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **);
2251637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **);
2252637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *);
2253d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *);
2254637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat);
22553fa6b06aSMark Adams 
22569ae82921SPaul Mullowney #endif
22579ae82921SPaul Mullowney 
2258d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL)
2259d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2260d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2261d67ff14aSKarl Rupp #endif
2262d67ff14aSKarl Rupp 
226354efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW)
2264014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec);
2265014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec);
22662a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *);
226754efbe56SHong Zhang #endif
226854efbe56SHong Zhang 
2269d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
2270d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2271d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt);
2272d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *);
2273d24d4204SJose E. Roman #endif
2274d24d4204SJose E. Roman 
2275014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *);
2276014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *);
2277014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]);
2278014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]);
2279014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***);
2280014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *);
228119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType);
2282014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]);
2283014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat);
2284d8588912SDave May 
22854325cce7SMatthew G Knepley PETSC_EXTERN PetscErrorCode MatChop(Mat, PetscReal);
2286e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *);
22874325cce7SMatthew G Knepley 
2288b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **);
228953dd7562SDmitry Karpeev 
2290c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat);
2291c094ef40SMatthew G. Knepley 
2292539c167fSBarry Smith PETSC_INTERN PetscErrorCode MatHeaderMerge(Mat, Mat *);
2293539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *);
22941a2c6b5cSJunchao Zhang 
22957ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *);
229672833a62Smarkadams4 
2297*2d776b49SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, Mat *);
229823a5497aSJed Brown #endif
2299