12eac72dbSBarry Smith /* 22eac72dbSBarry Smith Include file for the matrix component of PETSc 32eac72dbSBarry Smith */ 426bd1501SBarry Smith #ifndef PETSCMAT_H 526bd1501SBarry Smith #define PETSCMAT_H 6ac09b921SBarry Smith 72c8e378dSBarry Smith #include <petscvec.h> 82eac72dbSBarry Smith 9ac09b921SBarry Smith /* SUBMANSEC = Mat */ 10ac09b921SBarry Smith 11d9274352SBarry Smith /*S 128f6c3df8SBarry Smith Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without 138f6c3df8SBarry Smith an explicit sparse representation (such as matrix-free operators) 142eac72dbSBarry Smith 15d91e6319SBarry Smith Level: beginner 16d91e6319SBarry Smith 172ef1f0ffSBarry Smith Note: 1816a05f60SBarry Smith See [](doc_matrix), [](chapter_matrices) and `MatType` for available matrix types 192ef1f0ffSBarry Smith 2016a05f60SBarry Smith .seealso: [](doc_matrix), [](chapter_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()` 21d9274352SBarry Smith S*/ 22d9274352SBarry Smith typedef struct _p_Mat *Mat; 23d9274352SBarry Smith 2476bdecfbSBarry Smith /*J 258f6c3df8SBarry Smith MatType - String with the name of a PETSc matrix type 26d9274352SBarry Smith 27d9274352SBarry Smith Level: beginner 28d9274352SBarry Smith 292ef1f0ffSBarry Smith Note: 302ef1f0ffSBarry Smith [](doc_matrix) for a table of available matrix types 312ef1f0ffSBarry Smith 3216a05f60SBarry Smith .seealso: [](doc_matrix), [](chapter_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()` 3376bdecfbSBarry Smith J*/ 3419fd82e9SBarry Smith typedef const char *MatType; 35273d9f13SBarry Smith #define MATSAME "same" 365a11e1b2SBarry Smith #define MATMAIJ "maij" 37273d9f13SBarry Smith #define MATSEQMAIJ "seqmaij" 38273d9f13SBarry Smith #define MATMPIMAIJ "mpimaij" 3949bd79ccSDebojyoti Ghosh #define MATKAIJ "kaij" 4049bd79ccSDebojyoti Ghosh #define MATSEQKAIJ "seqkaij" 4149bd79ccSDebojyoti Ghosh #define MATMPIKAIJ "mpikaij" 42273d9f13SBarry Smith #define MATIS "is" 435a11e1b2SBarry Smith #define MATAIJ "aij" 44273d9f13SBarry Smith #define MATSEQAIJ "seqaij" 45273d9f13SBarry Smith #define MATMPIAIJ "mpiaij" 465a11e1b2SBarry Smith #define MATAIJCRL "aijcrl" 475a11e1b2SBarry Smith #define MATSEQAIJCRL "seqaijcrl" 485a11e1b2SBarry Smith #define MATMPIAIJCRL "mpiaijcrl" 499ae82921SPaul Mullowney #define MATAIJCUSPARSE "aijcusparse" 509ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE "seqaijcusparse" 519ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE "mpiaijcusparse" 5247d993e7Ssuyashtn #define MATAIJHIPSPARSE "aijhipsparse" 5347d993e7Ssuyashtn #define MATSEQAIJHIPSPARSE "seqaijhipsparse" 5447d993e7Ssuyashtn #define MATMPIAIJHIPSPARSE "mpiaijhipsparse" 558c3ff71bSJunchao Zhang #define MATAIJKOKKOS "aijkokkos" 568c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS "seqaijkokkos" 578c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS "mpiaijkokkos" 58d67ff14aSKarl Rupp #define MATAIJVIENNACL "aijviennacl" 59d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL "seqaijviennacl" 60d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL "mpiaijviennacl" 615a11e1b2SBarry Smith #define MATAIJPERM "aijperm" 625a11e1b2SBarry Smith #define MATSEQAIJPERM "seqaijperm" 635a11e1b2SBarry Smith #define MATMPIAIJPERM "mpiaijperm" 644dfdc2d9SRichard Tran Mills #define MATAIJSELL "aijsell" 654dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL "seqaijsell" 664dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL "mpiaijsell" 674a2a386eSRichard Tran Mills #define MATAIJMKL "aijmkl" 684a2a386eSRichard Tran Mills #define MATSEQAIJMKL "seqaijmkl" 694a2a386eSRichard Tran Mills #define MATMPIAIJMKL "mpiaijmkl" 70b5b72c8aSIrina Sokolova #define MATBAIJMKL "baijmkl" 71b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL "seqbaijmkl" 72b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL "mpibaijmkl" 73273d9f13SBarry Smith #define MATSHELL "shell" 74c1fff1c6SRichard Tran Mills #define MATCENTERING "centering" 755a11e1b2SBarry Smith #define MATDENSE "dense" 76637a0070SStefano Zampini #define MATDENSECUDA "densecuda" 7747d993e7Ssuyashtn #define MATDENSEHIP "densehip" 78209238afSKris Buschelman #define MATSEQDENSE "seqdense" 79bfc799aaSStefano Zampini #define MATSEQDENSECUDA "seqdensecuda" 8047d993e7Ssuyashtn #define MATSEQDENSEHIP "seqdensehip" 81273d9f13SBarry Smith #define MATMPIDENSE "mpidense" 82637a0070SStefano Zampini #define MATMPIDENSECUDA "mpidensecuda" 8347d993e7Ssuyashtn #define MATMPIDENSEHIP "mpidensehip" 84db31f6deSJed Brown #define MATELEMENTAL "elemental" 85d24d4204SJose E. Roman #define MATSCALAPACK "scalapack" 865a11e1b2SBarry Smith #define MATBAIJ "baij" 87273d9f13SBarry Smith #define MATSEQBAIJ "seqbaij" 88273d9f13SBarry Smith #define MATMPIBAIJ "mpibaij" 89273d9f13SBarry Smith #define MATMPIADJ "mpiadj" 905a11e1b2SBarry Smith #define MATSBAIJ "sbaij" 91273d9f13SBarry Smith #define MATSEQSBAIJ "seqsbaij" 92273d9f13SBarry Smith #define MATMPISBAIJ "mpisbaij" 93cebc7f6cSBarry Smith #define MATMFFD "mffd" 94c8a8475eSBarry Smith #define MATNORMAL "normal" 95c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN "normalh" 96ab92ecdeSBarry Smith #define MATLRC "lrc" 972a6744ebSBarry Smith #define MATSCATTER "scatter" 98421e10b8SBarry Smith #define MATBLOCKMAT "blockmat" 99793850ffSBarry Smith #define MATCOMPOSITE "composite" 1001f8c7532SHong Zhang #define MATFFT "fft" 1011f8c7532SHong Zhang #define MATFFTW "fftw" 102e133240eSMatthew G Knepley #define MATSEQCUFFT "seqcufft" 10347d993e7Ssuyashtn #define MATSEQHIPFFT "seqhipfft" 104013e2dc7SBarry Smith #define MATTRANSPOSEMAT PETSC_DEPRECATED_MACRO("GCC warning \"MATTRANSPOSEMAT macro is deprecated use MATTRANSPOSEVIRTUAL (since version 3.18)\"") "transpose" 105013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL "transpose" 106013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose" 10772ca8751SBarry Smith #define MATSCHURCOMPLEMENT "schurcomplement" 1081d6018f0SLisandro Dalcin #define MATPYTHON "python" 10963c07aadSStefano Zampini #define MATHYPRE "hypre" 110f91d8e95SBarry Smith #define MATHYPRESTRUCT "hyprestruct" 111a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT "hypresstruct" 112ee1cef2cSJed Brown #define MATSUBMATRIX "submatrix" 1132c0dbf93SJed Brown #define MATLOCALREF "localref" 114d8588912SDave May #define MATNEST "nest" 115c094ef40SMatthew G. Knepley #define MATPREALLOCATOR "preallocator" 116d4002b98SHong Zhang #define MATSELL "sell" 117d4002b98SHong Zhang #define MATSEQSELL "seqsell" 118d4002b98SHong Zhang #define MATMPISELL "mpisell" 1192d1451d4SHong Zhang #define MATSELLCUDA "sellcuda" 1202d1451d4SHong Zhang #define MATSEQSELLCUDA "seqsellcuda" 1212d1451d4SHong Zhang #define MATMPISELLCUDA "mpisellcuda" 122a3b2e22bSHong Zhang #define MATDUMMY "dummy" 123cd929ea3SAlp Dener #define MATLMVM "lmvm" 12478e4361aSAlp Dener #define MATLMVMDFP "lmvmdfp" 12578e4361aSAlp Dener #define MATLMVMBFGS "lmvmbfgs" 12678e4361aSAlp Dener #define MATLMVMSR1 "lmvmsr1" 127864588a7SAlp Dener #define MATLMVMBROYDEN "lmvmbroyden" 128864588a7SAlp Dener #define MATLMVMBADBROYDEN "lmvmbadbroyden" 129864588a7SAlp Dener #define MATLMVMSYMBROYDEN "lmvmsymbroyden" 130864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN "lmvmsymbadbroyden" 131864588a7SAlp Dener #define MATLMVMDIAGBROYDEN "lmvmdiagbroyden" 1323423f386SBarry Smith #define MATCONSTANTDIAGONAL "constantdiagonal" 133*345a4b08SToby Isaac #define MATDIAGONAL "diagonal" 134c7a4214aSPierre Jolivet #define MATHTOOL "htool" 13553022affSStefano Zampini #define MATH2OPUS "h2opus" 136773941d6SBarry Smith 13776bdecfbSBarry Smith /*J 13816a05f60SBarry Smith MatSolverType - String with the name of a PETSc factorization based matrix solver type. 1399989ab13SBarry Smith 140c2b89b5dSBarry Smith For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc 1419989ab13SBarry Smith 1429989ab13SBarry Smith Level: beginner 1439989ab13SBarry Smith 1442ef1f0ffSBarry Smith Note: 14516a05f60SBarry Smith `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as 14616a05f60SBarry Smith a ./configure option to install them 147c7ccbb75SBarry Smith 1482ef1f0ffSBarry Smith .seealso: [](sec_matfactor), [](chapter_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()` 14976bdecfbSBarry Smith J*/ 150ea799195SBarry Smith typedef const char *MatSolverType; 1512692d6eeSBarry Smith #define MATSOLVERSUPERLU "superlu" 1522692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST "superlu_dist" 15308f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK "strumpack" 1542692d6eeSBarry Smith #define MATSOLVERUMFPACK "umfpack" 15520db9a53SJed Brown #define MATSOLVERCHOLMOD "cholmod" 156d89f5e7aSBarry Smith #define MATSOLVERKLU "klu" 157d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL "elemental" 158d24d4204SJose E. Roman #define MATSOLVERSCALAPACK "scalapack" 1592692d6eeSBarry Smith #define MATSOLVERESSL "essl" 1602692d6eeSBarry Smith #define MATSOLVERLUSOL "lusol" 1612692d6eeSBarry Smith #define MATSOLVERMUMPS "mumps" 162d615f992SSatish Balay #define MATSOLVERMKL_PARDISO "mkl_pardiso" 163d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO "mkl_cpardiso" 1642692d6eeSBarry Smith #define MATSOLVERPASTIX "pastix" 1652692d6eeSBarry Smith #define MATSOLVERMATLAB "matlab" 1662692d6eeSBarry Smith #define MATSOLVERPETSC "petsc" 1672692d6eeSBarry Smith #define MATSOLVERBAS "bas" 1689ae82921SPaul Mullowney #define MATSOLVERCUSPARSE "cusparse" 169bfc799aaSStefano Zampini #define MATSOLVERCUDA "cuda" 17047d993e7Ssuyashtn #define MATSOLVERHIPSPARSE "hipsparse" 17147d993e7Ssuyashtn #define MATSOLVERHIP "hip" 172930e68a5SMark Adams #define MATSOLVERKOKKOS "kokkos" 173a2fc1e05SToby Isaac #define MATSOLVERSPQR "spqr" 174c0cdd4a1SDahai Guo 175b24902e0SBarry Smith /*E 176b24902e0SBarry Smith MatFactorType - indicates what type of factorization is requested 177b24902e0SBarry Smith 1782ef1f0ffSBarry Smith Values: 1792ef1f0ffSBarry Smith + `MAT_FACTOR_LU` - LU factorization 1802ef1f0ffSBarry Smith . `MAT_FACTOR_CHOLESKY` - Cholesky factorization 1812ef1f0ffSBarry Smith . `MAT_FACTOR_ILU` - ILU factorization 1822ef1f0ffSBarry Smith . `MAT_FACTOR_ICC` - incomplete Cholesky factorization 1832ef1f0ffSBarry Smith . `MAT_FACTOR_ILUDT` - ILU factorization with drop tolerance 1842ef1f0ffSBarry Smith - `MAT_FACTOR_QR` - QR factorization 185b24902e0SBarry Smith 18616a05f60SBarry Smith Level: beginner 18716a05f60SBarry Smith 1882ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()` 189b24902e0SBarry Smith E*/ 1909371c9d4SSatish Balay typedef enum { 1919371c9d4SSatish Balay MAT_FACTOR_NONE, 1929371c9d4SSatish Balay MAT_FACTOR_LU, 1939371c9d4SSatish Balay MAT_FACTOR_CHOLESKY, 1949371c9d4SSatish Balay MAT_FACTOR_ILU, 1959371c9d4SSatish Balay MAT_FACTOR_ICC, 1969371c9d4SSatish Balay MAT_FACTOR_ILUDT, 1979371c9d4SSatish Balay MAT_FACTOR_QR, 1989371c9d4SSatish Balay MAT_FACTOR_NUM_TYPES 1999371c9d4SSatish Balay } MatFactorType; 200014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[]; 201e92e720dSBarry Smith 202ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *); 203ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *); 204f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *); 205d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatFactorGetCanUseOrdering() (since version 3.15)") static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b) 206d71ae5a4SJacob Faibussowitsch { 2079371c9d4SSatish Balay return MatFactorGetCanUseOrdering(A, b); 2089371c9d4SSatish Balay } 209ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *); 210014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *); 2117abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType); 2122430ea28SJose E. Roman PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatSolverFunction)(Mat, MatFactorType, Mat *); 2132430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFunction); 2142430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFunction *); 21525ef9dfeSBarry Smith typedef MatSolverType MatSolverPackage PETSC_DEPRECATED_TYPEDEF("Use MatSolverType (since version 3.9)"); 216d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSolverTypeRegister() (since version 3.9)") static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFunction f) 217d71ae5a4SJacob Faibussowitsch { 2189371c9d4SSatish Balay return MatSolverTypeRegister(stype, mtype, ftype, f); 2199371c9d4SSatish Balay } 220d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSolverTypeGet() (since version 3.9)") static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFunction *f) 221d71ae5a4SJacob Faibussowitsch { 2229371c9d4SSatish Balay return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f); 2239371c9d4SSatish Balay } 2249989ab13SBarry Smith 2254222ddf1SHong Zhang /*E 2264222ddf1SHong Zhang MatProductType - indicates what type of matrix product is requested 2274222ddf1SHong Zhang 2282ef1f0ffSBarry Smith Values: 2292ef1f0ffSBarry Smith + `MATPRODUCT_AB` - product of two matrices 2302ef1f0ffSBarry Smith . `MATPRODUCT_AtB` - product of the transpose of a given matrix with a matrix 2312ef1f0ffSBarry Smith . `MATPRODUCT_ABt` - product of a matrix with the transpose of another given matrix 2322ef1f0ffSBarry Smith . `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself 2332ef1f0ffSBarry Smith . `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix 2342ef1f0ffSBarry Smith - `MATPRODUCT_ABC` - the product of three matrices 2352ef1f0ffSBarry Smith 23616a05f60SBarry Smith Level: beginner 23716a05f60SBarry Smith 2382ef1f0ffSBarry Smith .seealso: [](sec_matmatproduct), [](chapter_matrices), `MatProductSetType()` 2394222ddf1SHong Zhang E*/ 2409371c9d4SSatish Balay typedef enum { 2419371c9d4SSatish Balay MATPRODUCT_UNSPECIFIED = 0, 2429371c9d4SSatish Balay MATPRODUCT_AB, 2439371c9d4SSatish Balay MATPRODUCT_AtB, 2449371c9d4SSatish Balay MATPRODUCT_ABt, 2459371c9d4SSatish Balay MATPRODUCT_PtAP, 2469371c9d4SSatish Balay MATPRODUCT_RARt, 2479371c9d4SSatish Balay MATPRODUCT_ABC 2489371c9d4SSatish Balay } MatProductType; 249544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[]; 2504222ddf1SHong Zhang 2514222ddf1SHong Zhang /*J 2524222ddf1SHong Zhang MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation 2534222ddf1SHong Zhang 2544222ddf1SHong Zhang Level: beginner 2554222ddf1SHong Zhang 2562ef1f0ffSBarry Smith .seealso: [](sec_matmatproduct), [](chapter_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType` 2574222ddf1SHong Zhang J*/ 2584222ddf1SHong Zhang typedef const char *MatProductAlgorithm; 2593e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT "default" 2603e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED "sorted" 2613e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE "scalable" 2623e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST "scalable_fast" 2633e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP "heap" 2643e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP "btheap" 2653e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED "llcondensed" 2663e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE "rowmerge" 2673e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT "outerproduct" 2683e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB "at*b" 2693e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP "rap" 2703e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE "nonscalable" 2713e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI "seqmpi" 2723e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND "backend" 2733e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING "overlapping" 2743e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED "merged" 2753e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE "allatonce" 2763e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged" 2773e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV "allgatherv" 2783e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC "cyclic" 2793e662e0bSHong Zhang #if defined(PETSC_HAVE_HYPRE) 2803e662e0bSHong Zhang #define MATPRODUCTALGORITHMHYPRE "hypre" 2813e662e0bSHong Zhang #endif 2824222ddf1SHong Zhang 2834222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *); 2844222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat); 2854222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType); 2864222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm); 2874222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal); 2884222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat); 2894222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat); 2904222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat); 2914222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat); 2924417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat); 2936718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer); 294c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *); 295c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *); 2964222ddf1SHong Zhang 297c06d978dSMatthew Knepley /* Logging support */ 2980700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */ 299014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID; 300335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID; 301014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID; 302014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID; 303014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID; 304014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID; 305014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID; 306014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID; 307c06d978dSMatthew Knepley 308ceb03754SKris Buschelman /*E 3092ef1f0ffSBarry Smith MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions 310cf37664fSBarry Smith are to be reused to store the new matrix values. 311cf37664fSBarry Smith 3122ef1f0ffSBarry Smith Values: 3132ef1f0ffSBarry Smith + `MAT_INITIAL_MATRIX` - create a new matrix 3142ef1f0ffSBarry Smith . `MAT_REUSE_MATRIX` - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX` 3152ef1f0ffSBarry Smith . `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions) 3162ef1f0ffSBarry Smith - `MAT_IGNORE_MATRIX` - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions) 317ceb03754SKris Buschelman 318ceb03754SKris Buschelman Level: beginner 319ceb03754SKris Buschelman 3202ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()` 321ceb03754SKris Buschelman E*/ 3229371c9d4SSatish Balay typedef enum { 3239371c9d4SSatish Balay MAT_INITIAL_MATRIX, 3249371c9d4SSatish Balay MAT_REUSE_MATRIX, 3259371c9d4SSatish Balay MAT_IGNORE_MATRIX, 3269371c9d4SSatish Balay MAT_INPLACE_MATRIX 3279371c9d4SSatish Balay } MatReuse; 328ceb03754SKris Buschelman 3295494a064SHong Zhang /*E 3302ef1f0ffSBarry Smith MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()` 3312ef1f0ffSBarry Smith include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`. 3325494a064SHong Zhang 3332ef1f0ffSBarry Smith Level: developer 3345494a064SHong Zhang 3352ef1f0ffSBarry Smith Values: 3362ef1f0ffSBarry Smith + `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values 3372ef1f0ffSBarry Smith - `MAT_GET_VALUES` - copy the matrix values 3382ef1f0ffSBarry Smith 3392ef1f0ffSBarry Smith Developer Note: 3402ef1f0ffSBarry Smith Why is not just a boolean used for this information? 3412ef1f0ffSBarry Smith 3422ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()` 3435494a064SHong Zhang E*/ 3449371c9d4SSatish Balay typedef enum { 3459371c9d4SSatish Balay MAT_DO_NOT_GET_VALUES, 3469371c9d4SSatish Balay MAT_GET_VALUES 3479371c9d4SSatish Balay } MatCreateSubMatrixOption; 3485494a064SHong Zhang 349607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void); 350c06d978dSMatthew Knepley 351014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *); 352014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt); 35319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType); 3540d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *); 3550d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType); 356014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat); 357fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]); 358bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat)); 35923bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]); 360014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]); 36126cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]); 36226cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]); 363014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]); 364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]); 36584d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool); 366f69a0ea3SMatthew Knepley 367140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList; 368140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList; 369140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList; 37028988994SBarry Smith 3713b224e63SBarry Smith /*E 372aa6c7ce3SBarry Smith MatStructure - Indicates if two matrices have the same nonzero structure 3733b224e63SBarry Smith 3742ef1f0ffSBarry Smith Values: 3752ef1f0ffSBarry Smith + `SAME_NONZERO_PATTERN` - the two matrices have identical nonzero patterns 3762ef1f0ffSBarry Smith . `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns 3772ef1f0ffSBarry Smith . `SUBSET_NONZERO_PATTERN` - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix 3782ef1f0ffSBarry Smith - `UNKNOWN_NONZERO_PATTERN` - there is no known relationship between the nonzero patterns. In this case the implementations 3792ef1f0ffSBarry Smith may try to detect a relationship to optimize the operation 380531d0c6aSBarry Smith 38116a05f60SBarry Smith Level: beginner 38216a05f60SBarry Smith 3832ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()` 3843b224e63SBarry Smith E*/ 3859371c9d4SSatish Balay typedef enum { 3869371c9d4SSatish Balay DIFFERENT_NONZERO_PATTERN, 3879371c9d4SSatish Balay SUBSET_NONZERO_PATTERN, 3889371c9d4SSatish Balay SAME_NONZERO_PATTERN, 3899371c9d4SSatish Balay UNKNOWN_NONZERO_PATTERN 3909371c9d4SSatish Balay } MatStructure; 391d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[]; 3923b224e63SBarry Smith 3939779e05dSSatish Balay #if defined PETSC_HAVE_MKL_SPARSE 394ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 395ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 39680095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 397ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 39880095d54SIrina Sokolova #endif 399cd929ea3SAlp Dener 400d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 401d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 402d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]); 403d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 40407e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *); 40507e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *); 40607e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *); 40707e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt); 408b921024eSHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *); 40980095d54SIrina Sokolova 410014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 411014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 412014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 413014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 414014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 4158f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 4166a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]); 417014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *); 4183b00a383SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *); 4193b00a383SHong Zhang 420014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 421014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 422014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 4237e8381f9SStefano Zampini 424e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]); 42582a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]); 4267e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode); 427d21a29f3SJed Brown 428014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *); 429014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 430d21a29f3SJed Brown 431014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 432014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 43338f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 434014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 4354cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]); 436dfb205c3SBarry Smith 437014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *); 438c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *); 439014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *); 440c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *); 441986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *); 442267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *); 443c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *); 444014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 445014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 446c0cdd4a1SDahai Guo 447014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *); 448014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter); 449014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *); 450014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *); 451014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat); 452014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat); 4539371c9d4SSatish Balay typedef enum { 4549371c9d4SSatish Balay MAT_COMPOSITE_MERGE_RIGHT, 4559371c9d4SSatish Balay MAT_COMPOSITE_MERGE_LEFT 4569371c9d4SSatish Balay } MatCompositeMergeType; 4578c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType); 458014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *); 4599371c9d4SSatish Balay typedef enum { 4609371c9d4SSatish Balay MAT_COMPOSITE_ADDITIVE, 4619371c9d4SSatish Balay MAT_COMPOSITE_MULTIPLICATIVE 4629371c9d4SSatish Balay } MatCompositeType; 463014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType); 4646dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *); 4653b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure); 4663b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *); 4676d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *); 4688b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *); 46903049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *); 4706d7c1e57SBarry Smith 47119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *); 472014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *); 473dedccee8SHong Zhang 474014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *); 4758060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *); 476d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *); 47706511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *); 478fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *); 47965f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *); 48054e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *); 48154e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS); 482014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *); 4833423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *); 484*345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatCreateDiagonal(Vec, Mat *); 485*345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetDiagonal(Mat, Vec *); 486*345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreDiagonal(Mat, Vec *); 487*345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetInverseDiagonal(Mat, Vec *); 488*345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreInverseDiagonal(Mat, Vec *); 4891472f72bSBarry Smith 490978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE) 491d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 492978814f1SStefano Zampini #endif 493978814f1SStefano Zampini 494014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]); 495ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]); 4961d6018f0SLisandro Dalcin 497846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat); 498014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat); 499014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *); 500e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *); 50121c89e3eSBarry Smith 502014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat); 503014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat); 504014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat); 505014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *); 506014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *); 507713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **); 5080da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *); 509479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat); 5108a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *); 51199cafbc1SBarry Smith 512014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 5138a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode); 514014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 515014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]); 516014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]); 517014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]); 51873a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom); 51984cb2905SBarry Smith 5202ef4de8bSBarry Smith /*S 5212ef1f0ffSBarry Smith MatStencil - Data structure (C struct) for storing information about rows and 5222ef1f0ffSBarry Smith columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()` 52362ef0227SBarry Smith 5242ef1f0ffSBarry Smith Level: beginner 5252ef1f0ffSBarry Smith 5262ef1f0ffSBarry Smith Notes: 52762ef0227SBarry Smith The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored). 52887497f52SBarry Smith The c represents the the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored. 52962ef0227SBarry Smith 53087497f52SBarry Smith For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`. 531be479b30SJed Brown 5322ef1f0ffSBarry Smith For staggered grids, see `DMStagStencil` 5332ef4de8bSBarry Smith 5342ef1f0ffSBarry Smith Fortran Note: 5352ef1f0ffSBarry Smith See `MatSetValuesStencil()` for details. 5362ef4de8bSBarry Smith 5372ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`, 5382ef1f0ffSBarry Smith `DMStagStencil` 5392ef4de8bSBarry Smith S*/ 540435da068SBarry Smith typedef struct { 541c1ac3661SBarry Smith PetscInt k, j, i, c; 542435da068SBarry Smith } MatStencil; 5432ef4de8bSBarry Smith 544014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 545014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 546014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt); 547435da068SBarry Smith 548d91e6319SBarry Smith /*E 5492ef1f0ffSBarry Smith MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use 550d91e6319SBarry Smith 5512ef1f0ffSBarry Smith Values: 5522ef1f0ffSBarry Smith + `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix 5532ef1f0ffSBarry Smith - `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted 5542ef1f0ffSBarry Smith 55516a05f60SBarry Smith Level: beginner 55616a05f60SBarry Smith 5572ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()` 558d91e6319SBarry Smith E*/ 5599371c9d4SSatish Balay typedef enum { 5609371c9d4SSatish Balay MAT_FLUSH_ASSEMBLY = 1, 5619371c9d4SSatish Balay MAT_FINAL_ASSEMBLY = 0 5629371c9d4SSatish Balay } MatAssemblyType; 563014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType); 564014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType); 565014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *); 5664f9c727eSBarry Smith 567d91e6319SBarry Smith /*E 5682ef1f0ffSBarry Smith MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage 569d91e6319SBarry Smith 570d91e6319SBarry Smith Level: beginner 571d91e6319SBarry Smith 5722ef1f0ffSBarry Smith Note: 5732ef1f0ffSBarry Smith See `MatSetOption()` for the use of the options 5742ef1f0ffSBarry Smith 5752ef1f0ffSBarry Smith Developer Note: 57695452b02SPatrick Sanan Entries that are negative need not be called collectively by all processes. 577382164b0SBarry Smith 5782ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatSetOption()` 579d91e6319SBarry Smith E*/ 5809371c9d4SSatish Balay typedef enum { 5819371c9d4SSatish Balay MAT_OPTION_MIN = -3, 582c5e4d11fSDmitry Karpeev MAT_UNUSED_NONZERO_LOCATION_ERR = -2, 58392d4d306SBarry Smith MAT_ROW_ORIENTED = -1, 584382164b0SBarry Smith MAT_SYMMETRIC = 1, 585382164b0SBarry Smith MAT_STRUCTURALLY_SYMMETRIC = 2, 5868c78258cSHong Zhang MAT_FORCE_DIAGONAL_ENTRIES = 3, 587382164b0SBarry Smith MAT_IGNORE_OFF_PROC_ENTRIES = 4, 588382164b0SBarry Smith MAT_USE_HASH_TABLE = 5, 589382164b0SBarry Smith MAT_KEEP_NONZERO_PATTERN = 6, 590382164b0SBarry Smith MAT_IGNORE_ZERO_ENTRIES = 7, 591382164b0SBarry Smith MAT_USE_INODES = 8, 592382164b0SBarry Smith MAT_HERMITIAN = 9, 593382164b0SBarry Smith MAT_SYMMETRY_ETERNAL = 10, 594c5e4d11fSDmitry Karpeev MAT_NEW_NONZERO_LOCATION_ERR = 11, 595382164b0SBarry Smith MAT_IGNORE_LOWER_TRIANGULAR = 12, 596382164b0SBarry Smith MAT_ERROR_LOWER_TRIANGULAR = 13, 597382164b0SBarry Smith MAT_GETROW_UPPERTRIANGULAR = 14, 598382164b0SBarry Smith MAT_SPD = 15, 59992d4d306SBarry Smith MAT_NO_OFF_PROC_ZERO_ROWS = 16, 60092d4d306SBarry Smith MAT_NO_OFF_PROC_ENTRIES = 17, 60192d4d306SBarry Smith MAT_NEW_NONZERO_LOCATIONS = 18, 602c5e4d11fSDmitry Karpeev MAT_NEW_NONZERO_ALLOCATION_ERR = 19, 603c5e4d11fSDmitry Karpeev MAT_SUBSET_OFF_PROC_ENTRIES = 20, 604c10200c1SHong Zhang MAT_SUBMAT_SINGLEIS = 21, 605957cac9fSHong Zhang MAT_STRUCTURE_ONLY = 22, 606071fcb05SBarry Smith MAT_SORTED_FULL = 23, 6071a2c6b5cSJunchao Zhang MAT_FORM_EXPLICIT_TRANSPOSE = 24, 608b94d7dedSBarry Smith MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25, 609b94d7dedSBarry Smith MAT_SPD_ETERNAL = 26, 6109371c9d4SSatish Balay MAT_OPTION_MAX = 27 6119371c9d4SSatish Balay } MatOption; 612e057df02SPaul Mullowney 6130f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions; 614014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOption(Mat, MatOption, PetscBool); 6157d68702bSBarry Smith PETSC_EXTERN PetscErrorCode MatGetOption(Mat, MatOption, PetscBool *); 616856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode MatPropagateSymmetryOptions(Mat, Mat); 61719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetType(Mat, MatType *); 61884cb2905SBarry Smith 619014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 620014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 621014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 622014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowUpperTriangular(Mat); 623014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowUpperTriangular(Mat); 624014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnVector(Mat, Vec, PetscInt); 6258c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetArray(Mat, PetscScalar *[]); 6268f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]); 627d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]); 6288c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArray(Mat, PetscScalar *[]); 6298f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]); 630d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]); 63121e72a00SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *); 632bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 6334099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetType(Mat, MatType); 634ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatSeqAIJKron(Mat, Mat, MatReuse, Mat *); 635388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *)); 6364099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList; 637cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJGetArray(Mat, PetscScalar *[]); 638cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJRestoreArray(Mat, PetscScalar *[]); 6398397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJGetArray(Mat, PetscScalar *[]); 6408397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]); 6418c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArray(Mat, PetscScalar *[]); 6428c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArray(Mat, PetscScalar *[]); 643d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDensePlaceArray(Mat, const PetscScalar[]); 644d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseReplaceArray(Mat, const PetscScalar[]); 645d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseResetArray(Mat); 6468572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArrayRead(Mat, const PetscScalar *[]); 6478572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayRead(Mat, const PetscScalar *[]); 6486947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetArrayWrite(Mat, PetscScalar *[]); 6496947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWrite(Mat, PetscScalar *[]); 650cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *); 651cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]); 652cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *); 653cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]); 654cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *); 655cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]); 656014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSize(Mat, PetscInt *); 657014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSize(Mat, PetscInt); 658014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSizes(Mat, PetscInt *, PetscInt *); 659014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizes(Mat, PetscInt, PetscInt); 66033d57670SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizesFromMats(Mat, Mat, Mat); 6610da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetVariableBlockSizes(Mat, PetscInt, PetscInt *); 6620da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt **); 6630da83c2eSBarry Smith 66486aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]); 66586aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]); 6666947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *); 6676947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *); 6686947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *); 6696947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *); 6706947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *); 6716947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *); 672a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 6735ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *); 6741620fd73SBarry Smith 675014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec); 676014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec); 677014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec); 678014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec); 679014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec); 680014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *); 681014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *); 682014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec); 683014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec); 684014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat); 685bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat); 686eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat); 687f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec); 688f5edf698SHong Zhang 689d91e6319SBarry Smith /*E 690d91e6319SBarry Smith MatDuplicateOption - Indicates if a duplicated sparse matrix should have 691d91e6319SBarry Smith its numerical values copied over or just its nonzero structure. 692d91e6319SBarry Smith 6932ef1f0ffSBarry Smith Values: 6942ef1f0ffSBarry Smith + `MAT_DO_NOT_COPY_VALUES` - Create a matrix using the same nonzero pattern as the original matrix, 6952ef1f0ffSBarry Smith with zeros for the numerical values 6962ef1f0ffSBarry Smith . `MAT_COPY_VALUES` - Create a matrix with the same nonzero pattern as the original matrix 6972ef1f0ffSBarry Smith and with the same numerical values. 6982ef1f0ffSBarry Smith - `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix 6992ef1f0ffSBarry Smith and does not copy it, using zeros for the numerical values. The parent and 7002ef1f0ffSBarry Smith child matrices will share their index (i and j) arrays, and you cannot 7012ef1f0ffSBarry Smith insert new nonzero entries into either matrix 7020018da39SRichard Tran Mills 70316a05f60SBarry Smith Level: beginner 70416a05f60SBarry Smith 70587497f52SBarry Smith Note: 70687497f52SBarry Smith Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in 70787497f52SBarry Smith this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified. 70870dcbbb9SBarry Smith 7092ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatDuplicate()` 710d91e6319SBarry Smith E*/ 7119371c9d4SSatish Balay typedef enum { 7129371c9d4SSatish Balay MAT_DO_NOT_COPY_VALUES, 7139371c9d4SSatish Balay MAT_COPY_VALUES, 7149371c9d4SSatish Balay MAT_SHARE_NONZERO_PATTERN 7159371c9d4SSatish Balay } MatDuplicateOption; 7162e8a6d31SBarry Smith 71719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *); 718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *); 71994a9d846SBarry Smith 720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure); 721014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer); 722014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *); 723014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *); 724014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *); 725014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *); 726014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *); 727b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *); 728b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *); 729014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *); 730014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer); 7317b80b807SBarry Smith 7321a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7331a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7341a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7351a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 736d4fbbf0eSBarry Smith 737d91e6319SBarry Smith /*S 73887497f52SBarry Smith MatInfo - Context of matrix information, used with `MatGetInfo()` 739d91e6319SBarry Smith 740d91e6319SBarry Smith Level: intermediate 741d91e6319SBarry Smith 7422ef1f0ffSBarry Smith Fortran Note: 7432ef1f0ffSBarry Smith Information is stored as a double-precision array of dimension `MAT_INFO_SIZE` 7442ef1f0ffSBarry Smith 7452ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatGetInfo()`, `MatInfoType` 746d91e6319SBarry Smith S*/ 7474e220ebcSLois Curfman McInnes typedef struct { 748b0a32e0cSBarry Smith PetscLogDouble block_size; /* block size */ 749b0a32e0cSBarry Smith PetscLogDouble nz_allocated, nz_used, nz_unneeded; /* number of nonzeros */ 750b0a32e0cSBarry Smith PetscLogDouble memory; /* memory allocated */ 751b0a32e0cSBarry Smith PetscLogDouble assemblies; /* number of matrix assemblies called */ 752b0a32e0cSBarry Smith PetscLogDouble mallocs; /* number of mallocs during MatSetValues() */ 753b0a32e0cSBarry Smith PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */ 754b0a32e0cSBarry Smith PetscLogDouble factor_mallocs; /* number of mallocs during factorization */ 7554e220ebcSLois Curfman McInnes } MatInfo; 7564e220ebcSLois Curfman McInnes 757d9274352SBarry Smith /*E 758d9274352SBarry Smith MatInfoType - Indicates if you want information about the local part of the matrix, 759d9274352SBarry Smith the entire parallel matrix or the maximum over all the local parts. 760d9274352SBarry Smith 7612ef1f0ffSBarry Smith Values: 7622ef1f0ffSBarry Smith + `MAT_LOCAL` - values for each MPI process part of the matrix 7632ef1f0ffSBarry Smith . `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes 7642ef1f0ffSBarry Smith - `MAT_GLOBAL_SUM` - sum of each value over all MPI processes 765d9274352SBarry Smith 76616a05f60SBarry Smith Level: beginner 76716a05f60SBarry Smith 7682ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatGetInfo()`, `MatInfo` 769d9274352SBarry Smith E*/ 7709371c9d4SSatish Balay typedef enum { 7719371c9d4SSatish Balay MAT_LOCAL = 1, 7729371c9d4SSatish Balay MAT_GLOBAL_MAX = 2, 7739371c9d4SSatish Balay MAT_GLOBAL_SUM = 3 7749371c9d4SSatish Balay } MatInfoType; 775014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *); 776014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec); 777014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]); 778014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]); 779014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]); 780014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]); 781014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec); 782014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *); 7837fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *); 7847fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat); 785014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *); 786014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *); 787014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec); 788014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode); 789a52676ecSHong Zhang 790014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *); 791014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *); 792014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *); 793014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 794014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 795e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 796e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 797a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 798a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 799cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 8004222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 801447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 80286919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *); 8037b80b807SBarry Smith 804014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *); 805014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *); 806857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *); 807857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *); 808857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *); 809857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *); 810857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *); 811857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *); 812857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *); 813014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat); 8141b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat); 815014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec); 817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec); 8217b80b807SBarry Smith 822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *); 823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *); 824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *); 825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **); 826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *); 827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **); 828566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *); 8295ef9f2a5SBarry Smith 8307dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 831d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatrices() (since version 3.8)") static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 832d71ae5a4SJacob Faibussowitsch { 8339371c9d4SSatish Balay return MatCreateSubMatrices(mat, n, irow, icol, scall, submat); 8349371c9d4SSatish Balay } 8357dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 836d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatricesMPI() (since version 3.8)") static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 837d71ae5a4SJacob Faibussowitsch { 8389371c9d4SSatish Balay return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat); 8399371c9d4SSatish Balay } 840014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]); 841df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]); 8427dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *); 843d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatrix() (since version 3.8)") static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat) 844d71ae5a4SJacob Faibussowitsch { 8459371c9d4SSatish Balay return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat); 8469371c9d4SSatish Balay } 847014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *); 848014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *); 849014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *); 850014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *); 8517b80b807SBarry Smith 852014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *); 853014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *); 854014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat); 855014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *); 8568a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *); 857014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *); 858ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *); 859f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *); 860014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *); 861014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]); 8628efafbd8SBarry Smith 863014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt); 864aa1e27eaSFande Kong PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov); 865d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool); 8667b80b807SBarry Smith 867014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 86822440eb1SKris Buschelman 8697bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 8702df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 8717bab7c10SHong Zhang 872014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *); 873014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *); 87422440eb1SKris Buschelman 875014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 876014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *); 877bc011b1eSHong Zhang 878014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure); 879014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure); 8801c741599SHong Zhang 881014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar); 882014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar); 8837b80b807SBarry Smith 884014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping); 885014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 886a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *); 88781fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout); 888014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 889014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 890014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 891014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 892e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 893014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 894014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 895052efed2SBarry Smith 896014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt); 897014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *); 89890f02eecSBarry Smith 899014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec); 900014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec); 901014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec); 90230b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *); 90330b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *); 90430b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *); 9052a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *); 906d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateVecs() (since version 3.6)") static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y) 907d71ae5a4SJacob Faibussowitsch { 9089371c9d4SSatish Balay return MatCreateVecs(mat, x, y); 9099371c9d4SSatish Balay } 91053cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *); 911014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *); 912014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *); 9133a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *); 9149c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *); 915bd481603SBarry Smith 916bd481603SBarry Smith /*MC 9171620fd73SBarry Smith MatSetValue - Set a single entry into a matrix. 9181620fd73SBarry Smith 919e1c5b2e2SJose E. Roman This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()` 920e1c5b2e2SJose E. Roman MUST be called after all calls to `MatSetValue()` have been completed. 9211620fd73SBarry Smith 922a9834a7dSSatish Balay Synopsis: 923a9834a7dSSatish Balay #include <petscmat.h> 924e1c5b2e2SJose E. Roman PetscErrorCode MatSetValue(Mat m,PetscInt i,PetscInt j,PetscScalar va,InsertMode mode) 925e1c5b2e2SJose E. Roman 926e1c5b2e2SJose E. Roman Not Collective 927a9834a7dSSatish Balay 9281620fd73SBarry Smith Input Parameters: 9291620fd73SBarry Smith + m - the matrix 93016a05f60SBarry Smith . i - the row location of the entry 93116a05f60SBarry Smith . j - the column location of the entry 93216a05f60SBarry Smith . va - the value to insert 93387497f52SBarry Smith - mode - either `INSERT_VALUES` or `ADD_VALUES` 9341620fd73SBarry Smith 9351620fd73SBarry Smith Level: beginner 9361620fd73SBarry Smith 9372ef1f0ffSBarry Smith Note: 9382ef1f0ffSBarry Smith For efficiency one should use `MatSetValues()` and set several values simultaneously. 9392ef1f0ffSBarry Smith 9402ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `InsertMode`, `MatGetValue()`, `MatSetValues()`, 9412ef1f0ffSBarry Smith `MatSetValueLocal()`, `MatSetValuesLocal()` 9421620fd73SBarry Smith M*/ 94316a05f60SBarry Smith static inline PetscErrorCode MatSetValue(Mat m, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 944d71ae5a4SJacob Faibussowitsch { 94516a05f60SBarry Smith return MatSetValues(m, 1, &i, 1, &j, &va, mode); 9469371c9d4SSatish Balay } 9471620fd73SBarry Smith 948e5e5a7b5SPatrick Sanan /*@C 949e5e5a7b5SPatrick Sanan MatGetValue - Gets a single value from a matrix 9501620fd73SBarry Smith 951e5e5a7b5SPatrick Sanan Not Collective; can only return a value owned by the given process 952e5e5a7b5SPatrick Sanan 953e5e5a7b5SPatrick Sanan Input Parameters: 954e5e5a7b5SPatrick Sanan + mat - the matrix 955e5e5a7b5SPatrick Sanan . row - the row location of the entry 956e5e5a7b5SPatrick Sanan - col - the column location of the entry 957e5e5a7b5SPatrick Sanan 958e5e5a7b5SPatrick Sanan Output Parameter: 959e5e5a7b5SPatrick Sanan . va - the value 960e5e5a7b5SPatrick Sanan 9612ef1f0ffSBarry Smith Level: advanced 9622ef1f0ffSBarry Smith 963e5e5a7b5SPatrick Sanan Notes: 9642ef1f0ffSBarry Smith The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd` before this call 9652ef1f0ffSBarry Smith 96687497f52SBarry Smith For efficiency one should use `MatGetValues()` and get several values simultaneously. 967e5e5a7b5SPatrick Sanan 96887497f52SBarry Smith See notes for `MatGetValues()`. 969e5e5a7b5SPatrick Sanan 9702ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()` 971e5e5a7b5SPatrick Sanan @*/ 972d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va) 973d71ae5a4SJacob Faibussowitsch { 9749371c9d4SSatish Balay return MatGetValues(mat, 1, &row, 1, &col, va); 9759371c9d4SSatish Balay } 976e5e5a7b5SPatrick Sanan 977e5e5a7b5SPatrick Sanan /*MC 9782ef1f0ffSBarry Smith MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes. 979e5e5a7b5SPatrick Sanan 980e5e5a7b5SPatrick Sanan Not Collective 981e5e5a7b5SPatrick Sanan 982e5e5a7b5SPatrick Sanan Input Parameters: 983e5e5a7b5SPatrick Sanan + m - the matrix 98416a05f60SBarry Smith . i - the row location of the entry 98516a05f60SBarry Smith . j - the column location of the entry 98616a05f60SBarry Smith . va - the value to insert 98787497f52SBarry Smith - mode - either `INSERT_VALUES` or `ADD_VALUES` 988e5e5a7b5SPatrick Sanan 9892ef1f0ffSBarry Smith Level: intermediate 9902ef1f0ffSBarry Smith 991e5e5a7b5SPatrick Sanan Notes: 99287497f52SBarry Smith For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously. 993e5e5a7b5SPatrick Sanan 99487497f52SBarry Smith See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used. 995e5e5a7b5SPatrick Sanan 9962ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatSetValue()`, `MatSetValuesLocal()` 997e5e5a7b5SPatrick Sanan M*/ 99816a05f60SBarry Smith static inline PetscErrorCode MatSetValueLocal(Mat m, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 999d71ae5a4SJacob Faibussowitsch { 100016a05f60SBarry Smith return MatSetValuesLocal(m, 1, &i, 1, &j, &va, mode); 10019371c9d4SSatish Balay } 10021620fd73SBarry Smith 10031620fd73SBarry Smith /*MC 1004d0609cedSBarry Smith MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per 1005bd481603SBarry Smith row in a matrix providing the data that one can use to correctly preallocate the matrix. 1006bd481603SBarry Smith 1007bd481603SBarry Smith Synopsis: 1008aaa7dc30SBarry Smith #include <petscmat.h> 1009d0609cedSBarry Smith PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz) 1010bd481603SBarry Smith 1011d083f849SBarry Smith Collective 1012bd481603SBarry Smith 1013bd481603SBarry Smith Input Parameters: 1014bd481603SBarry Smith + comm - the communicator that will share the eventually allocated matrix 1015859fcb39SBarry Smith . nrows - the number of LOCAL rows in the matrix 1016859fcb39SBarry Smith - ncols - the number of LOCAL columns in the matrix 1017bd481603SBarry Smith 1018bd481603SBarry Smith Output Parameters: 1019bd481603SBarry Smith + dnz - the array that will be passed to the matrix preallocation routines 1020a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1021bd481603SBarry Smith 10222ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1023bd481603SBarry Smith 1024bd481603SBarry Smith Notes: 10252ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 10262ef1f0ffSBarry Smith the use of this routine 10272ef1f0ffSBarry Smith 1028d0609cedSBarry Smith This is a macro that handles its own error checking, it does not return an error code. 1029d0609cedSBarry Smith 10302ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1031bd481603SBarry Smith 10322ef1f0ffSBarry Smith Developer Note: 10332ef1f0ffSBarry Smith This is a MACRO not a function because it has a leading { that is closed by `PetscPreallocateFinalize()`. 1034bd481603SBarry Smith 10352ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1036db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 1037bd481603SBarry Smith M*/ 10389371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \ 10399371c9d4SSatish Balay do { \ 10403ba16761SJacob Faibussowitsch PetscInt __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \ 10413ba16761SJacob Faibussowitsch PetscInt PETSC_UNUSED __start; \ 10429566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \ 10439566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \ 10449371c9d4SSatish Balay __start = __end - __ncols; \ 10459371c9d4SSatish Balay (void)__start; \ 10469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \ 10475f80ce2aSJacob Faibussowitsch __rstart -= __nrows 10487c922b88SBarry Smith 1049d0609cedSBarry Smith #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO("GCC warning \"Use MatPreallocateBegin() (since version 3.18)\"") MatPreallocateBegin(__VA_ARGS__) 1050d0609cedSBarry Smith 1051bd481603SBarry Smith /*MC 1052bd481603SBarry Smith MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1053bd481603SBarry Smith inserted using a local number of the rows and columns 1054bd481603SBarry Smith 1055bd481603SBarry Smith Synopsis: 1056aaa7dc30SBarry Smith #include <petscmat.h> 1057c1ac3661SBarry Smith PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1058bd481603SBarry Smith 1059bd481603SBarry Smith Not Collective 1060bd481603SBarry Smith 1061bd481603SBarry Smith Input Parameters: 1062784ac674SJed Brown + map - the row mapping from local numbering to global numbering 1063bd481603SBarry Smith . nrows - the number of rows indicated 10641d73ed98SBarry Smith . rows - the indices of the rows 1065784ac674SJed Brown . cmap - the column mapping from local to global numbering 1066bd481603SBarry Smith . ncols - the number of columns in the matrix 1067bd481603SBarry Smith . cols - the columns indicated 1068bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1069a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1070bd481603SBarry Smith 10712ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1072bd481603SBarry Smith 1073bd481603SBarry Smith Notes: 10742ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 10752ef1f0ffSBarry Smith the use of this routine 1076bd481603SBarry Smith 10772ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1078bd481603SBarry Smith 10792ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1080db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()` 1081bd481603SBarry Smith M*/ 108294bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 10839371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1084c4f061fbSSatish Balay 1085bd481603SBarry Smith /*MC 1086c1154cd5SBarry Smith MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1087c1154cd5SBarry Smith inserted using a local number of the rows and columns. This version removes any duplicate columns in cols 1088c1154cd5SBarry Smith 1089c1154cd5SBarry Smith Synopsis: 1090c1154cd5SBarry Smith #include <petscmat.h> 1091c1154cd5SBarry Smith PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1092c1154cd5SBarry Smith 1093c1154cd5SBarry Smith Not Collective 1094c1154cd5SBarry Smith 1095c1154cd5SBarry Smith Input Parameters: 1096c1154cd5SBarry Smith + map - the row mapping from local numbering to global numbering 1097c1154cd5SBarry Smith . nrows - the number of rows indicated 1098c1154cd5SBarry Smith . rows - the indices of the rows (these values are mapped to the global values) 1099c1154cd5SBarry Smith . cmap - the column mapping from local to global numbering 1100c1154cd5SBarry Smith . ncols - the number of columns in the matrix (this value will be changed if duplicate columns are found) 1101c1154cd5SBarry Smith . cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed) 1102c1154cd5SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1103a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1104c1154cd5SBarry Smith 11052ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1106c1154cd5SBarry Smith 1107c1154cd5SBarry Smith Notes: 11082ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11092ef1f0ffSBarry Smith the use of this routine 1110c1154cd5SBarry Smith 11112ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1112c1154cd5SBarry Smith 11132ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1114db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1115c1154cd5SBarry Smith M*/ 111694bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 11179371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1118c1154cd5SBarry Smith 1119c1154cd5SBarry Smith /*MC 1120d6e23781SBarry Smith MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1121bd481603SBarry Smith inserted using a local number of the rows and columns 1122bd481603SBarry Smith 1123bd481603SBarry Smith Synopsis: 1124aaa7dc30SBarry Smith #include <petscmat.h> 1125d6e23781SBarry Smith PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1126d6e23781SBarry Smith 1127d6e23781SBarry Smith Not Collective 1128d6e23781SBarry Smith 1129d6e23781SBarry Smith Input Parameters: 1130d6e23781SBarry Smith + map - the row mapping from local numbering to global numbering 1131d6e23781SBarry Smith . nrows - the number of rows indicated 1132d6e23781SBarry Smith . rows - the indices of the rows 1133d6e23781SBarry Smith . cmap - the column mapping from local to global numbering 1134d6e23781SBarry Smith . ncols - the number of columns in the matrix 1135d6e23781SBarry Smith . cols - the columns indicated 1136d6e23781SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1137a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1138d6e23781SBarry Smith 11392ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1140d6e23781SBarry Smith 1141d6e23781SBarry Smith Notes: 11422ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11432ef1f0ffSBarry Smith the use of this routine 1144d6e23781SBarry Smith 11452ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1146d6e23781SBarry Smith 11472ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1148db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()` 1149d6e23781SBarry Smith M*/ 115094bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 11519371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1152d6e23781SBarry Smith 1153d6e23781SBarry Smith /*MC 1154d6e23781SBarry Smith MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1155d6e23781SBarry Smith inserted using a local number of the rows and columns 1156d6e23781SBarry Smith 1157d6e23781SBarry Smith Synopsis: 1158d6e23781SBarry Smith #include <petscmat.h> 1159d6e23781SBarry Smith PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1160bd481603SBarry Smith 1161bd481603SBarry Smith Not Collective 1162bd481603SBarry Smith 1163bd481603SBarry Smith Input Parameters: 1164bd481603SBarry Smith + map - the mapping between local numbering and global numbering 1165bd481603SBarry Smith . nrows - the number of rows indicated 11661d73ed98SBarry Smith . rows - the indices of the rows 1167bd481603SBarry Smith . ncols - the number of columns in the matrix 1168bd481603SBarry Smith . cols - the columns indicated 1169bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1170a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1171bd481603SBarry Smith 11722ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1173bd481603SBarry Smith 1174bd481603SBarry Smith Notes: 11752ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11762ef1f0ffSBarry Smith the use of this routine 1177bd481603SBarry Smith 11782ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1179bd481603SBarry Smith 11802ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()` 1181db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1182bd481603SBarry Smith M*/ 118394bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \ 11849371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));) 1185e83a5d19SLisandro Dalcin 1186bd481603SBarry Smith /*MC 1187bd481603SBarry Smith MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1188bd481603SBarry Smith inserted using a local number of the rows and columns 1189bd481603SBarry Smith 1190bd481603SBarry Smith Synopsis: 1191aaa7dc30SBarry Smith #include <petscmat.h> 1192c1ac3661SBarry Smith PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1193bd481603SBarry Smith 1194bd481603SBarry Smith Not Collective 1195bd481603SBarry Smith 1196bd481603SBarry Smith Input Parameters: 119764075487SBarry Smith + row - the row 1198bd481603SBarry Smith . ncols - the number of columns in the matrix 1199a50f8bf6SHong Zhang - cols - the columns indicated 1200a50f8bf6SHong Zhang 1201a50f8bf6SHong Zhang Output Parameters: 1202a50f8bf6SHong Zhang + dnz - the array that will be passed to the matrix preallocation routines 1203a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1204bd481603SBarry Smith 12052ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1206bd481603SBarry Smith 1207bd481603SBarry Smith Notes: 12082ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12092ef1f0ffSBarry Smith the use of this routine 1210bd481603SBarry Smith 12112ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1212bd481603SBarry Smith 1213d0609cedSBarry Smith This is a MACRO not a function because it uses variables declared in MatPreallocateBegin(). 12141620fd73SBarry Smith 12152ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1216db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1217bd481603SBarry Smith M*/ 12189371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \ 12199371c9d4SSatish Balay PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \ 122064075487SBarry Smith if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \ 1221a6042fd4SStefano Zampini else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 12229371c9d4SSatish Balay }) 12237c922b88SBarry Smith 1224bd481603SBarry Smith /*MC 1225d6e23781SBarry Smith MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1226bd481603SBarry Smith inserted using a local number of the rows and columns 1227bd481603SBarry Smith 1228bd481603SBarry Smith Synopsis: 1229aaa7dc30SBarry Smith #include <petscmat.h> 1230d6e23781SBarry Smith PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1231bd481603SBarry Smith 1232bd481603SBarry Smith Not Collective 1233bd481603SBarry Smith 1234bd481603SBarry Smith Input Parameters: 1235bd481603SBarry Smith + nrows - the number of rows indicated 12361d73ed98SBarry Smith . rows - the indices of the rows 1237bd481603SBarry Smith . ncols - the number of columns in the matrix 1238bd481603SBarry Smith . cols - the columns indicated 1239bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1240a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1241bd481603SBarry Smith 12422ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1243bd481603SBarry Smith 1244bd481603SBarry Smith Notes: 12452ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12462ef1f0ffSBarry Smith the use of this routine 1247bd481603SBarry Smith 12482ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1249bd481603SBarry Smith 1250d0609cedSBarry Smith This is a MACRO not a function because it uses variables declared in MatPreallocateBegin(). 12511620fd73SBarry Smith 12522ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`, 1253db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1254bd481603SBarry Smith M*/ 125594bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \ 12569371c9d4SSatish Balay PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \ 1257d3d32019SBarry Smith if (cols[__i] >= __end) onz[row - __rstart]++; \ 1258a6042fd4SStefano Zampini else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 12599371c9d4SSatish Balay }) 1260d3d32019SBarry Smith 1261bd481603SBarry Smith /*MC 1262a6042fd4SStefano Zampini MatPreallocateLocation - An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists 126316371a99SBarry Smith 126416371a99SBarry Smith Synopsis: 1265aaa7dc30SBarry Smith #include <petscmat.h> 126616371a99SBarry Smith PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz) 126716371a99SBarry Smith 126816371a99SBarry Smith Not Collective 126916371a99SBarry Smith 127016371a99SBarry Smith Input Parameters: 1271a2b725a8SWilliam Gropp + A - matrix 127216371a99SBarry Smith . row - row where values exist (must be local to this process) 127316371a99SBarry Smith . ncols - number of columns 127416371a99SBarry Smith . cols - columns with nonzeros 127516371a99SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1276a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 127716371a99SBarry Smith 12782ef1f0ffSBarry Smith Level: deprecated (since v3.19) 127916371a99SBarry Smith 128016371a99SBarry Smith Notes: 12812ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12822ef1f0ffSBarry Smith the use of this routine 128316371a99SBarry Smith 12842ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 128516371a99SBarry Smith 128616371a99SBarry Smith This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines. 128716371a99SBarry Smith 12882ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1289db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 129016371a99SBarry Smith M*/ 1291d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz)) 129216371a99SBarry Smith 129316371a99SBarry Smith /*MC 1294d0609cedSBarry Smith MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per 1295bd481603SBarry Smith row in a matrix providing the data that one can use to correctly preallocate the matrix. 1296bd481603SBarry Smith 1297bd481603SBarry Smith Synopsis: 1298aaa7dc30SBarry Smith #include <petscmat.h> 1299d0609cedSBarry Smith PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz) 1300bd481603SBarry Smith 1301d083f849SBarry Smith Collective 1302bd481603SBarry Smith 1303bd481603SBarry Smith Input Parameters: 130416371a99SBarry Smith + dnz - the array that was be passed to the matrix preallocation routines 1305a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1306bd481603SBarry Smith 13072ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1308bd481603SBarry Smith 1309bd481603SBarry Smith Notes: 13102ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 13112ef1f0ffSBarry Smith the use of this routine 1312d0609cedSBarry Smith 13132ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1314bd481603SBarry Smith 13152ef1f0ffSBarry Smith Developer Note: 1316d0609cedSBarry Smith This is a MACRO not a function because it closes the { started in MatPreallocateBegin(). 13171620fd73SBarry Smith 13182ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1319db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 1320bd481603SBarry Smith M*/ 13219371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \ 13229371c9d4SSatish Balay PetscCall(PetscFree2(dnz, onz)); \ 13239371c9d4SSatish Balay } \ 13249371c9d4SSatish Balay while (0) 1325d0609cedSBarry Smith 1326d0609cedSBarry Smith #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO("GCC warning \"Use MatPreallocateEnd() (since version 3.18)\"") MatPreallocateEnd(__VA_ARGS__) 13277c922b88SBarry Smith 13287b80b807SBarry Smith /* Routines unique to particular data structures */ 1329014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *); 1330698d4c6aSKris Buschelman 1331014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *); 1332014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *); 1333698d4c6aSKris Buschelman 1334014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]); 1335014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]); 1336014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1337014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1338014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1339014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool); 13407b80b807SBarry Smith 1341a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4 1342a96a251dSBarry Smith 1343014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1344014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1345014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]); 134619b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt); 1347273d9f13SBarry Smith 1348014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1349014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1350014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1351014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1352014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1353014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1354014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1355014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]); 1356b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *); 1357252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *); 1358014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]); 1359014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]); 13609230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 13619230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 1362014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *); 1363273d9f13SBarry Smith 136449a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *); 1365ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt); 1366d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatDenseSetLDA() (since version 3.14)") static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda) 1367d71ae5a4SJacob Faibussowitsch { 13689371c9d4SSatish Balay return MatDenseSetLDA(A, lda); 13699371c9d4SSatish Balay } 1370014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *); 13711b807ce4Svictorle 1372621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1373621e819fSSatish Balay 1374014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat); 1375014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat); 13762e8a6d31SBarry Smith 1377014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *); 13787cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *); 13797b80b807SBarry Smith /* 13807b80b807SBarry Smith These routines are not usually accessed directly, rather solving is 138194b7f48cSBarry Smith done through the KSP and PC interfaces. 13827b80b807SBarry Smith */ 13837b80b807SBarry Smith 138476bdecfbSBarry Smith /*J 13852ef1f0ffSBarry Smith MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used 13862ef1f0ffSBarry Smith to reduce fill in sparse factorizations. 1387d9274352SBarry Smith 1388d9274352SBarry Smith Level: beginner 1389d9274352SBarry Smith 13902c7c0729SBarry Smith Notes: 139116a05f60SBarry Smith If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one 139216a05f60SBarry Smith of its own. 13932c7c0729SBarry Smith 13942ef1f0ffSBarry Smith There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()` 13952ef1f0ffSBarry Smith 13962ef1f0ffSBarry Smith Developer Note: 13972ef1f0ffSBarry Smith This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning` 13982ef1f0ffSBarry Smith 13992ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`, 14002ef1f0ffSBarry Smith `PCFactorSetOrderingType()` 140176bdecfbSBarry Smith J*/ 140219fd82e9SBarry Smith typedef const char *MatOrderingType; 14032692d6eeSBarry Smith #define MATORDERINGNATURAL "natural" 14042692d6eeSBarry Smith #define MATORDERINGND "nd" 14052692d6eeSBarry Smith #define MATORDERING1WD "1wd" 14062692d6eeSBarry Smith #define MATORDERINGRCM "rcm" 14072692d6eeSBarry Smith #define MATORDERINGQMD "qmd" 14082692d6eeSBarry Smith #define MATORDERINGROWLENGTH "rowlength" 1409510184a7SJed Brown #define MATORDERINGWBM "wbm" 1410fc1bef75SJed Brown #define MATORDERINGSPECTRAL "spectral" 1411312e372aSBarry Smith #define MATORDERINGAMD "amd" /* only works if UMFPACK is installed with PETSc */ 1412048412efSPablo Brubeck #define MATORDERINGMETISND "metisnd" /* only works if METIS is installed with PETSc */ 14139bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */ 14142c7c0729SBarry Smith #define MATORDERINGEXTERNAL "external" /* uses an ordering type internal to the factorization package */ 1415b12f92e5SBarry Smith 141619fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrdering(Mat, MatOrderingType, IS *, IS *); 1417140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrderingList(PetscFunctionList *); 1418bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *)); 1419140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList; 1420d4fbbf0eSBarry Smith 1421013e2dc7SBarry Smith #include "petscmatcoarsen.h" 1422013e2dc7SBarry Smith 1423014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS); 1424fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *); 1425a2ce50c7SBarry Smith 14264ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *); 14274ac6704cSBarry Smith 1428d91e6319SBarry Smith /*S 14292ef1f0ffSBarry Smith MatFactorShiftType - Type of numeric shift used for factorizations 1430d90ac83dSHong Zhang 14312ef1f0ffSBarry Smith Values: 14322ef1f0ffSBarry Smith + `MAT_SHIFT_NONE` - do not shift the matrix diagonal entries 14332ef1f0ffSBarry Smith . `MAT_SHIFT_NONZERO` - shift the entries to be non-zero 14342ef1f0ffSBarry Smith . `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite 14352ef1f0ffSBarry Smith - `MAT_SHIFT_INBLOCKS` - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ` 1436d90ac83dSHong Zhang 14372ef1f0ffSBarry Smith Level: intermediate 14382ef1f0ffSBarry Smith 14392ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()` 1440d90ac83dSHong Zhang S*/ 14419371c9d4SSatish Balay typedef enum { 14429371c9d4SSatish Balay MAT_SHIFT_NONE, 14439371c9d4SSatish Balay MAT_SHIFT_NONZERO, 14449371c9d4SSatish Balay MAT_SHIFT_POSITIVE_DEFINITE, 14459371c9d4SSatish Balay MAT_SHIFT_INBLOCKS 14469371c9d4SSatish Balay } MatFactorShiftType; 14476a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[]; 14485e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[]; 1449d90ac83dSHong Zhang 1450d90ac83dSHong Zhang /*S 1451ec5066bdSBarry Smith MatFactorError - indicates what type of error was generated in a matrix factorization 14529aa7eafdSHong Zhang 14532ef1f0ffSBarry Smith Values: 14542ef1f0ffSBarry Smith + `MAT_FACTOR_NOERROR` - there was no error during the factorization 14552ef1f0ffSBarry Smith . `MAT_FACTOR_STRUCT_ZEROPIVOT` - there was a missing entry in a diagonal location of the matrix 14562ef1f0ffSBarry Smith . `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization 14572ef1f0ffSBarry Smith . `MAT_FACTOR_OUTMEMORY` - the factorization has run out of memory 14582ef1f0ffSBarry Smith - `MAT_FACTOR_OTHER` - some other error has occurred. 14599aa7eafdSHong Zhang 14602ef1f0ffSBarry Smith Level: intermediate 146100e125f8SBarry Smith 14622ef1f0ffSBarry Smith Note: 14632ef1f0ffSBarry Smith When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason` 14642ef1f0ffSBarry Smith 14652ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`, 14662ef1f0ffSBarry Smith `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason` 14679aa7eafdSHong Zhang S*/ 14689371c9d4SSatish Balay typedef enum { 14699371c9d4SSatish Balay MAT_FACTOR_NOERROR, 14709371c9d4SSatish Balay MAT_FACTOR_STRUCT_ZEROPIVOT, 14719371c9d4SSatish Balay MAT_FACTOR_NUMERIC_ZEROPIVOT, 14729371c9d4SSatish Balay MAT_FACTOR_OUTMEMORY, 14739371c9d4SSatish Balay MAT_FACTOR_OTHER 14749371c9d4SSatish Balay } MatFactorError; 14759aa7eafdSHong Zhang 147600e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *); 1477b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat); 14787b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *); 147900e125f8SBarry Smith 14809aa7eafdSHong Zhang /*S 1481422a814eSBarry Smith MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization 1482b00f7748SHong Zhang 1483b00f7748SHong Zhang Level: developer 1484b00f7748SHong Zhang 14852ef1f0ffSBarry Smith Note: 14862ef1f0ffSBarry Smith You can use `MatFactorInfoInitialize()` to set default values. 1487b00f7748SHong Zhang 14882ef1f0ffSBarry Smith Fortran Note: 14892ef1f0ffSBarry Smith The data is available in a double precision arrays of size `MAT_FACTORINFO_SIZE` 14902ef1f0ffSBarry Smith 14912ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, 14922ef1f0ffSBarry Smith `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()` 1493b00f7748SHong Zhang S*/ 1494b00f7748SHong Zhang typedef struct { 149515e8a5b3SHong Zhang PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */ 149685317021SBarry Smith PetscReal usedt; 149715e8a5b3SHong Zhang PetscReal dt; /* drop tolerance */ 1498b00f7748SHong Zhang PetscReal dtcol; /* tolerance for pivoting */ 149915e8a5b3SHong Zhang PetscReal dtcount; /* maximum nonzeros to be allowed per row */ 150067e28bfeSBarry Smith PetscReal fill; /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */ 1501348344bbSBarry Smith PetscReal levels; /* ICC/ILU(levels) */ 1502bcd9e38bSBarry Smith PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 1503bcd9e38bSBarry Smith factorization may be faster if do not pivot */ 150415e8a5b3SHong Zhang PetscReal zeropivot; /* pivot is called zero if less than this */ 1505f4db908eSBarry Smith PetscReal shifttype; /* type of shift added to matrix factor to prevent zero pivots */ 1506f4db908eSBarry Smith PetscReal shiftamount; /* how large the shift is */ 150715e8a5b3SHong Zhang } MatFactorInfo; 1508ffa6d0a5SLois Curfman McInnes 1509014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *); 15109a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *); 15119a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15129a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *); 15139a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *); 15149a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *); 15159a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 15169a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 15179a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15189a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *); 15199a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *); 15203f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *); 15213f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15223f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *); 1523014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *); 1524014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec); 1525014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec); 1526014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec); 1527014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec); 1528014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec); 1529014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec); 1530014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs); 15317c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat); 15327c2f51b8SStefano Zampini 15339371c9d4SSatish Balay typedef enum { 15349371c9d4SSatish Balay MAT_FACTOR_SCHUR_UNFACTORED, 15359371c9d4SSatish Balay MAT_FACTOR_SCHUR_FACTORED, 15369371c9d4SSatish Balay MAT_FACTOR_SCHUR_INVERTED 15379371c9d4SSatish Balay } MatFactorSchurStatus; 15388e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS); 15397c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 15407c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus); 15415a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat); 15427c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 15435a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec); 15445a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec); 15456dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat); 1546bb5a7306SBarry Smith 15478a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat); 1548d91e6319SBarry Smith /*E 1549d91e6319SBarry Smith MatSORType - What type of (S)SOR to perform 1550bb1eb677SSatish Balay 15512ef1f0ffSBarry Smith Values: 15522ef1f0ffSBarry Smith + `SOR_FORWARD_SWEEP` - do a sweep from the first row of the matrix to the last 15532ef1f0ffSBarry Smith . `SOR_BACKWARD_SWEEP` - do a sweep from the last row to the first 15542ef1f0ffSBarry Smith . `SOR_SYMMETRIC_SWEEP` - do a sweep from the first row to the last and then back to the first 15552ef1f0ffSBarry Smith . `SOR_LOCAL_FORWARD_SWEEP` - each MPI rank does its own forward sweep with no communication 15562ef1f0ffSBarry Smith . `SOR_LOCAL_BACKWARD_SWEEP` - each MPI rank does its own backward sweep with no communication 15572ef1f0ffSBarry Smith . `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI rank does its own symmetric sweep with no communication 15582ef1f0ffSBarry Smith . `SOR_ZERO_INITIAL_GUESS` - indicates the initial solution is zero so the sweep can avoid unneeded computation 15592ef1f0ffSBarry Smith . `SOR_EISENSTAT` - apply the Eisentat application of SOR, see `PCEISENSTAT` 15602ef1f0ffSBarry Smith . `SOR_APPLY_UPPER` - multiply by the upper triangular portion of the matrix 15612ef1f0ffSBarry Smith - `SOR_APPLY_LOWER` - multiply by the lower triangular portion of the matrix 15622ef1f0ffSBarry Smith 1563d91e6319SBarry Smith Level: beginner 1564d91e6319SBarry Smith 15652ef1f0ffSBarry Smith Note: 15662ef1f0ffSBarry Smith These may be bitwise ORd together 1567d9274352SBarry Smith 15682ef1f0ffSBarry Smith Developer Note: 15692ef1f0ffSBarry Smith Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below 1570d91e6319SBarry Smith 15712ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatSOR()` 1572d91e6319SBarry Smith E*/ 15739371c9d4SSatish Balay typedef enum { 15749371c9d4SSatish Balay SOR_FORWARD_SWEEP = 1, 15759371c9d4SSatish Balay SOR_BACKWARD_SWEEP = 2, 15769371c9d4SSatish Balay SOR_SYMMETRIC_SWEEP = 3, 15779371c9d4SSatish Balay SOR_LOCAL_FORWARD_SWEEP = 4, 15789371c9d4SSatish Balay SOR_LOCAL_BACKWARD_SWEEP = 8, 15799371c9d4SSatish Balay SOR_LOCAL_SYMMETRIC_SWEEP = 12, 15809371c9d4SSatish Balay SOR_ZERO_INITIAL_GUESS = 16, 15819371c9d4SSatish Balay SOR_EISENSTAT = 32, 15829371c9d4SSatish Balay SOR_APPLY_UPPER = 64, 15839371c9d4SSatish Balay SOR_APPLY_LOWER = 128 15849371c9d4SSatish Balay } MatSORType; 1585014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec); 15868ed539a5SBarry Smith 15877086a01eSPeter Brune /*S 15887086a01eSPeter Brune MatColoring - Object for managing the coloring of matrices. 15897086a01eSPeter Brune 15907086a01eSPeter Brune Level: beginner 15917086a01eSPeter Brune 1592ec5066bdSBarry Smith Notes: 159387497f52SBarry Smith Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 159487497f52SBarry Smith matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors). 1595ec5066bdSBarry Smith 159687497f52SBarry Smith Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This 15972ef1f0ffSBarry Smith same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices. 1598ec5066bdSBarry Smith 15992ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`, 16002ef1f0ffSBarry Smith `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`, 16012ef1f0ffSBarry Smith `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen` 16027086a01eSPeter Brune S*/ 1603d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring; 1604d4db15c4SBarry Smith 1605d4db15c4SBarry Smith /*J 1606d4db15c4SBarry Smith MatColoringType - String with the name of a PETSc matrix coloring 1607d9274352SBarry Smith 1608d9274352SBarry Smith Level: beginner 1609d9274352SBarry Smith 16102ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring` 161176bdecfbSBarry Smith J*/ 161219fd82e9SBarry Smith typedef const char *MatColoringType; 16135567d71aSPeter Brune #define MATCOLORINGJP "jp" 1614b9acb617SPeter Brune #define MATCOLORINGPOWER "power" 16152692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural" 16162692d6eeSBarry Smith #define MATCOLORINGSL "sl" 16172692d6eeSBarry Smith #define MATCOLORINGLF "lf" 16182692d6eeSBarry Smith #define MATCOLORINGID "id" 16198121bdceSPeter Brune #define MATCOLORINGGREEDY "greedy" 1620b12f92e5SBarry Smith 16218ac6da0aSPeter Brune /*E 16222ef1f0ffSBarry Smith MatColoringWeightType - Type of weight scheme used for the coloring algorithm 16238ac6da0aSPeter Brune 16242ef1f0ffSBarry Smith Values: 162587497f52SBarry Smith + `MAT_COLORING_RANDOM` - Random weights 162687497f52SBarry Smith . `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering. 162787497f52SBarry Smith - `MAT_COLORING_LF` - Last-first weighting. 16288ac6da0aSPeter Brune 16298ac6da0aSPeter Brune Level: intermediate 16308ac6da0aSPeter Brune 16312ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()` 16328ac6da0aSPeter Brune E*/ 16339371c9d4SSatish Balay typedef enum { 16349371c9d4SSatish Balay MAT_COLORING_WEIGHT_RANDOM, 16359371c9d4SSatish Balay MAT_COLORING_WEIGHT_LEXICAL, 16369371c9d4SSatish Balay MAT_COLORING_WEIGHT_LF, 16379371c9d4SSatish Balay MAT_COLORING_WEIGHT_SL 16389371c9d4SSatish Balay } MatColoringWeightType; 16398ac6da0aSPeter Brune 1640335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *); 1641d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *); 1642335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *); 1643335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer); 1644335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType); 1645335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring); 1646335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt); 1647335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *); 1648335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt); 1649335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *); 1650335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *); 1651335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring)); 1652014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *); 16538ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType); 1654c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *); 16558ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm); 1656bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring); 1657d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatColoringTest() (since version 3.10)") static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring) 1658d71ae5a4SJacob Faibussowitsch { 16599371c9d4SSatish Balay return MatColoringTest(matcoloring, iscoloring); 16609371c9d4SSatish Balay } 1661bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring); 1662639f9d9dSBarry Smith 1663d9274352SBarry Smith /*S 166487497f52SBarry Smith MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring 1665639f9d9dSBarry Smith 1666d9274352SBarry Smith Level: beginner 1667d9274352SBarry Smith 1668ec5066bdSBarry Smith Notes: 166987497f52SBarry Smith This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()` 1670ec5066bdSBarry Smith 16712ef1f0ffSBarry Smith The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object 16722ef1f0ffSBarry Smith 16732ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()` 1674d9274352SBarry Smith S*/ 1675e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring; 1676639f9d9dSBarry Smith 1677014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *); 1678014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *); 1679014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer); 1680014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *); 1681014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **); 1682014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal); 1683014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring); 1684d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *); 1685014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec); 1686edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]); 1687f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring); 1688f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt); 1689bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *); 1690b1683b59SHong Zhang 1691b1683b59SHong Zhang /*S 1692b9af6bddSHong Zhang MatTransposeColoring - Object for computing a sparse matrix product C=A*B^T via coloring 1693b1683b59SHong Zhang 16942ef1f0ffSBarry Smith Level: developer 1695b1683b59SHong Zhang 16962ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()` 1697b1683b59SHong Zhang S*/ 1698b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring; 1699b1683b59SHong Zhang 1700014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *); 1701014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat); 1702014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat); 1703014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *); 1704b1683b59SHong Zhang 1705d9274352SBarry Smith /*S 1706d9274352SBarry Smith MatPartitioning - Object for managing the partitioning of a matrix or graph 1707d9274352SBarry Smith 1708d9274352SBarry Smith Level: beginner 1709d9274352SBarry Smith 171087497f52SBarry Smith Note: 171187497f52SBarry Smith There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations 171287497f52SBarry Smith via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`) 1713ec5066bdSBarry Smith 1714ec5066bdSBarry Smith Developers Note: 17152ef1f0ffSBarry Smith It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed 1716ec5066bdSBarry Smith 17172ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`, 17182ef1f0ffSBarry Smith `MatCoarsenType`, `MatCoarsenType` 1719d9274352SBarry Smith S*/ 172091e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning; 1721d9274352SBarry Smith 172276bdecfbSBarry Smith /*J 17238f6c3df8SBarry Smith MatPartitioningType - String with the name of a PETSc matrix partitioning 1724d9274352SBarry Smith 1725d9274352SBarry Smith Level: beginner 17260d04baf8SBarry Smith dm 17272ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`, 17282ef1f0ffSBarry Smith `MatCoarsenType`, `MatCoarsenType` 172976bdecfbSBarry Smith J*/ 173019fd82e9SBarry Smith typedef const char *MatPartitioningType; 17312692d6eeSBarry Smith #define MATPARTITIONINGCURRENT "current" 1732aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE "average" 17332692d6eeSBarry Smith #define MATPARTITIONINGSQUARE "square" 17342692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis" 17352692d6eeSBarry Smith #define MATPARTITIONINGCHACO "chaco" 17362692d6eeSBarry Smith #define MATPARTITIONINGPARTY "party" 173750d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch" 173888d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch" 173971306c60Sjroman 1740014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *); 174119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType); 1742014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt); 1743014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat); 1744252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt); 1745014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]); 1746014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]); 1747ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool); 1748ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *); 1749014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *); 1750fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *); 1751668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS); 1752f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *); 1753014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *); 1754bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning)); 1755014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer); 1756fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]); 1757014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning); 175819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *); 1759ca161407SBarry Smith 176027538973SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part); 1761014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning); 1762014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *); 17630752156aSBarry Smith 17649371c9d4SSatish Balay typedef enum { 17659371c9d4SSatish Balay MP_CHACO_MULTILEVEL = 1, 17669371c9d4SSatish Balay MP_CHACO_SPECTRAL = 2, 17679371c9d4SSatish Balay MP_CHACO_LINEAR = 4, 17689371c9d4SSatish Balay MP_CHACO_RANDOM = 5, 17699371c9d4SSatish Balay MP_CHACO_SCATTERED = 6 17709371c9d4SSatish Balay } MPChacoGlobalType; 17716a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[]; 17729371c9d4SSatish Balay typedef enum { 17739371c9d4SSatish Balay MP_CHACO_KERNIGHAN = 1, 17749371c9d4SSatish Balay MP_CHACO_NONE = 2 17759371c9d4SSatish Balay } MPChacoLocalType; 17766a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[]; 17779371c9d4SSatish Balay typedef enum { 17789371c9d4SSatish Balay MP_CHACO_LANCZOS = 0, 17799371c9d4SSatish Balay MP_CHACO_RQI = 1 17809371c9d4SSatish Balay } MPChacoEigenType; 17816a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[]; 1782b6956c12SJose Roman 1783014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType); 1784014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *); 1785014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType); 1786014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *); 1787014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal); 1788014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType); 1789014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *); 1790014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal); 1791014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *); 1792014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt); 1793014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *); 179471306c60Sjroman 179571306c60Sjroman #define MP_PARTY_OPT "opt" 179671306c60Sjroman #define MP_PARTY_LIN "lin" 179771306c60Sjroman #define MP_PARTY_SCA "sca" 179871306c60Sjroman #define MP_PARTY_RAN "ran" 179971306c60Sjroman #define MP_PARTY_GBF "gbf" 180071306c60Sjroman #define MP_PARTY_GCF "gcf" 180171306c60Sjroman #define MP_PARTY_BUB "bub" 180271306c60Sjroman #define MP_PARTY_DEF "def" 1803014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *); 180471306c60Sjroman #define MP_PARTY_HELPFUL_SETS "hs" 180571306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl" 180671306c60Sjroman #define MP_PARTY_NONE "no" 1807014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *); 1808014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal); 1809014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool); 1810014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool); 181171306c60Sjroman 18129371c9d4SSatish Balay typedef enum { 18139371c9d4SSatish Balay MP_PTSCOTCH_DEFAULT, 18149371c9d4SSatish Balay MP_PTSCOTCH_QUALITY, 18159371c9d4SSatish Balay MP_PTSCOTCH_SPEED, 18169371c9d4SSatish Balay MP_PTSCOTCH_BALANCE, 18179371c9d4SSatish Balay MP_PTSCOTCH_SAFETY, 18189371c9d4SSatish Balay MP_PTSCOTCH_SCALABILITY 18199371c9d4SSatish Balay } MPPTScotchStrategyType; 18206a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[]; 1821e0f1cffaSJose Roman 1822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal); 1823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *); 1824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType); 1825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *); 182671306c60Sjroman 1827b43b03e9SMark F. Adams /* 18286294fa2bSFande Kong * hierarchical partitioning 18296294fa2bSFande Kong */ 18304e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *); 18314e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *); 18324e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt); 18334e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt); 18346294fa2bSFande Kong 1835014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *); 1836591294e4SBarry Smith 18370752156aSBarry Smith /* 1838c786d857SStefano Zampini If you add entries here you must also add them to src/mat/f90-mod/petscmat.h 1839c786d857SStefano Zampini If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx 1840d4fbbf0eSBarry Smith */ 18419371c9d4SSatish Balay typedef enum { 18429371c9d4SSatish Balay MATOP_SET_VALUES = 0, 18431c1c02c0SLois Curfman McInnes MATOP_GET_ROW = 1, 18441c1c02c0SLois Curfman McInnes MATOP_RESTORE_ROW = 2, 18451c1c02c0SLois Curfman McInnes MATOP_MULT = 3, 18461c1c02c0SLois Curfman McInnes MATOP_MULT_ADD = 4, 18477c922b88SBarry Smith MATOP_MULT_TRANSPOSE = 5, 18487c922b88SBarry Smith MATOP_MULT_TRANSPOSE_ADD = 6, 18491c1c02c0SLois Curfman McInnes MATOP_SOLVE = 7, 18501c1c02c0SLois Curfman McInnes MATOP_SOLVE_ADD = 8, 18517c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE = 9, 18527c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE_ADD = 10, 18531c1c02c0SLois Curfman McInnes MATOP_LUFACTOR = 11, 18541c1c02c0SLois Curfman McInnes MATOP_CHOLESKYFACTOR = 12, 1855a714c06dSBarry Smith MATOP_SOR = 13, 18561c1c02c0SLois Curfman McInnes MATOP_TRANSPOSE = 14, 18571c1c02c0SLois Curfman McInnes MATOP_GETINFO = 15, 18581c1c02c0SLois Curfman McInnes MATOP_EQUAL = 16, 18591c1c02c0SLois Curfman McInnes MATOP_GET_DIAGONAL = 17, 18601c1c02c0SLois Curfman McInnes MATOP_DIAGONAL_SCALE = 18, 18611c1c02c0SLois Curfman McInnes MATOP_NORM = 19, 18621c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_BEGIN = 20, 18631c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_END = 21, 1864d519adbfSMatthew Knepley MATOP_SET_OPTION = 22, 1865d519adbfSMatthew Knepley MATOP_ZERO_ENTRIES = 23, 1866d519adbfSMatthew Knepley MATOP_ZERO_ROWS = 24, 1867d519adbfSMatthew Knepley MATOP_LUFACTOR_SYMBOLIC = 25, 1868d519adbfSMatthew Knepley MATOP_LUFACTOR_NUMERIC = 26, 1869d519adbfSMatthew Knepley MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27, 1870d519adbfSMatthew Knepley MATOP_CHOLESKY_FACTOR_NUMERIC = 28, 1871e5f2d425SStefano Zampini MATOP_SETUP = 29, 1872d519adbfSMatthew Knepley MATOP_ILUFACTOR_SYMBOLIC = 30, 1873d519adbfSMatthew Knepley MATOP_ICCFACTOR_SYMBOLIC = 31, 1874a5b7ff6bSBarry Smith MATOP_GET_DIAGONAL_BLOCK = 32, 1875e5f2d425SStefano Zampini MATOP_SET_INF = 33, 1876d519adbfSMatthew Knepley MATOP_DUPLICATE = 34, 1877d519adbfSMatthew Knepley MATOP_FORWARD_SOLVE = 35, 1878d519adbfSMatthew Knepley MATOP_BACKWARD_SOLVE = 36, 1879d519adbfSMatthew Knepley MATOP_ILUFACTOR = 37, 1880d519adbfSMatthew Knepley MATOP_ICCFACTOR = 38, 1881d519adbfSMatthew Knepley MATOP_AXPY = 39, 18827dae84e0SHong Zhang MATOP_CREATE_SUBMATRICES = 40, 1883d519adbfSMatthew Knepley MATOP_INCREASE_OVERLAP = 41, 1884d519adbfSMatthew Knepley MATOP_GET_VALUES = 42, 1885d519adbfSMatthew Knepley MATOP_COPY = 43, 1886d519adbfSMatthew Knepley MATOP_GET_ROW_MAX = 44, 1887d519adbfSMatthew Knepley MATOP_SCALE = 45, 1888d519adbfSMatthew Knepley MATOP_SHIFT = 46, 188935153367SBarry Smith MATOP_DIAGONAL_SET = 47, 18909d39f69dSJed Brown MATOP_ZERO_ROWS_COLUMNS = 48, 18919d39f69dSJed Brown MATOP_SET_RANDOM = 49, 1892d519adbfSMatthew Knepley MATOP_GET_ROW_IJ = 50, 1893d519adbfSMatthew Knepley MATOP_RESTORE_ROW_IJ = 51, 1894d519adbfSMatthew Knepley MATOP_GET_COLUMN_IJ = 52, 1895d519adbfSMatthew Knepley MATOP_RESTORE_COLUMN_IJ = 53, 1896d519adbfSMatthew Knepley MATOP_FDCOLORING_CREATE = 54, 1897d519adbfSMatthew Knepley MATOP_COLORING_PATCH = 55, 1898d519adbfSMatthew Knepley MATOP_SET_UNFACTORED = 56, 1899d519adbfSMatthew Knepley MATOP_PERMUTE = 57, 1900d519adbfSMatthew Knepley MATOP_SET_VALUES_BLOCKED = 58, 19017dae84e0SHong Zhang MATOP_CREATE_SUBMATRIX = 59, 1902d519adbfSMatthew Knepley MATOP_DESTROY = 60, 1903d519adbfSMatthew Knepley MATOP_VIEW = 61, 1904d519adbfSMatthew Knepley MATOP_CONVERT_FROM = 62, 1905e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_63=63 */ 19067bab7c10SHong Zhang MATOP_MATMAT_MULT_SYMBOLIC = 64, 19077bab7c10SHong Zhang MATOP_MATMAT_MULT_NUMERIC = 65, 1908d519adbfSMatthew Knepley MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66, 1909d519adbfSMatthew Knepley MATOP_SET_VALUES_LOCAL = 67, 1910d519adbfSMatthew Knepley MATOP_ZERO_ROWS_LOCAL = 68, 1911d519adbfSMatthew Knepley MATOP_GET_ROW_MAX_ABS = 69, 1912d519adbfSMatthew Knepley MATOP_GET_ROW_MIN_ABS = 70, 1913d519adbfSMatthew Knepley MATOP_CONVERT = 71, 1914e5f2d425SStefano Zampini MATOP_HAS_OPERATION = 72, 19159d39f69dSJed Brown /* MATOP_PLACEHOLDER_73=73, */ 1916d519adbfSMatthew Knepley MATOP_SET_VALUES_ADIFOR = 74, 1917d519adbfSMatthew Knepley MATOP_FD_COLORING_APPLY = 75, 1918d519adbfSMatthew Knepley MATOP_SET_FROM_OPTIONS = 76, 1919e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_77=77, */ 1920e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_78=78, */ 19219d39f69dSJed Brown MATOP_FIND_ZERO_DIAGONALS = 79, 1922d519adbfSMatthew Knepley MATOP_MULT_MULTIPLE = 80, 1923d519adbfSMatthew Knepley MATOP_SOLVE_MULTIPLE = 81, 1924d519adbfSMatthew Knepley MATOP_GET_INERTIA = 82, 1925d519adbfSMatthew Knepley MATOP_LOAD = 83, 1926d519adbfSMatthew Knepley MATOP_IS_SYMMETRIC = 84, 1927d519adbfSMatthew Knepley MATOP_IS_HERMITIAN = 85, 1928d519adbfSMatthew Knepley MATOP_IS_STRUCTURALLY_SYMMETRIC = 86, 1929820469bcSHong Zhang MATOP_SET_VALUES_BLOCKEDLOCAL = 87, 1930b41ce5d5SBarry Smith MATOP_CREATE_VECS = 88, 1931e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_89=89, */ 1932d519adbfSMatthew Knepley MATOP_MAT_MULT_SYMBOLIC = 90, 1933d519adbfSMatthew Knepley MATOP_MAT_MULT_NUMERIC = 91, 1934e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_92=92, */ 1935d519adbfSMatthew Knepley MATOP_PTAP_SYMBOLIC = 93, 1936d519adbfSMatthew Knepley MATOP_PTAP_NUMERIC = 94, 1937e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_95=95, */ 1938bda6c4cbSBarry Smith MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96, 1939bda6c4cbSBarry Smith MATOP_MAT_TRANSPOSE_MULT_NUMER = 97, 1940e5f2d425SStefano Zampini MATOP_BIND_TO_CPU = 98, 19417a3c3d58SStefano Zampini MATOP_PRODUCTSETFROMOPTIONS = 99, 19427a3c3d58SStefano Zampini MATOP_PRODUCTSYMBOLIC = 100, 19437a3c3d58SStefano Zampini MATOP_PRODUCTNUMERIC = 101, 1944d519adbfSMatthew Knepley MATOP_CONJUGATE = 102, 1945e5f2d425SStefano Zampini MATOP_VIEW_NATIVE = 103, 1946d519adbfSMatthew Knepley MATOP_SET_VALUES_ROW = 104, 1947d519adbfSMatthew Knepley MATOP_REAL_PART = 105, 1948bda6c4cbSBarry Smith MATOP_IMAGINARY_PART = 106, 1949bda6c4cbSBarry Smith MATOP_GET_ROW_UPPER_TRIANGULAR = 107, 1950bda6c4cbSBarry Smith MATOP_RESTORE_ROW_UPPER_TRIANG = 108, 1951bda6c4cbSBarry Smith MATOP_MAT_SOLVE = 109, 195229eadf9eSStefano Zampini MATOP_MAT_SOLVE_TRANSPOSE = 110, 1953d519adbfSMatthew Knepley MATOP_GET_ROW_MIN = 111, 19540e8d04f7SBarry Smith MATOP_GET_COLUMN_VECTOR = 112, 1955d519adbfSMatthew Knepley MATOP_MISSING_DIAGONAL = 113, 19560e8d04f7SBarry Smith MATOP_GET_SEQ_NONZERO_STRUCTUR = 114, 195789c6957cSBarry Smith MATOP_CREATE = 115, 195889c6957cSBarry Smith MATOP_GET_GHOSTS = 116, 19590e8d04f7SBarry Smith MATOP_GET_LOCAL_SUB_MATRIX = 117, 19600e8d04f7SBarry Smith MATOP_RESTORE_LOCALSUB_MATRIX = 118, 1961eeffb40dSHong Zhang MATOP_MULT_DIAGONAL_BLOCK = 119, 19620e8d04f7SBarry Smith MATOP_HERMITIAN_TRANSPOSE = 120, 19630e8d04f7SBarry Smith MATOP_MULT_HERMITIAN_TRANSPOSE = 121, 19640e8d04f7SBarry Smith MATOP_MULT_HERMITIAN_TRANS_ADD = 122, 19650e8d04f7SBarry Smith MATOP_GET_MULTI_PROC_BLOCK = 123, 19669d39f69dSJed Brown MATOP_FIND_NONZERO_ROWS = 124, 19670e8d04f7SBarry Smith MATOP_GET_COLUMN_NORMS = 125, 19689d39f69dSJed Brown MATOP_INVERT_BLOCK_DIAGONAL = 126, 1969e5f2d425SStefano Zampini MATOP_INVERT_VBLOCK_DIAGONAL = 127, 1970b41ce5d5SBarry Smith MATOP_CREATE_SUB_MATRICES_MPI = 128, 19712b8ad9a3SHong Zhang MATOP_SET_VALUES_BATCH = 129, 1972e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_130=130, */ 19730e8d04f7SBarry Smith MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131, 1974e9b602ebSSatish Balay MATOP_TRANSPOSE_MAT_MULT_NUMER = 132, 19750e8d04f7SBarry Smith MATOP_TRANSPOSE_COLORING_CREAT = 133, 19760e8d04f7SBarry Smith MATOP_TRANS_COLORING_APPLY_SPT = 134, 19770e8d04f7SBarry Smith MATOP_TRANS_COLORING_APPLY_DEN = 135, 1978e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_136=136, */ 19790e8d04f7SBarry Smith MATOP_RART_SYMBOLIC = 137, 19800e8d04f7SBarry Smith MATOP_RART_NUMERIC = 138, 1981e09a3074SHong Zhang MATOP_SET_BLOCK_SIZES = 139, 1982f9426fe0SMark Adams MATOP_AYPX = 140, 19831919a2e2SJed Brown MATOP_RESIDUAL = 141, 19849c8f2541SHong Zhang MATOP_FDCOLORING_SETUP = 142, 1985e5f2d425SStefano Zampini MATOP_FIND_OFFBLOCK_ENTRIES = 143, 19862d033e1fSHong Zhang MATOP_MPICONCATENATESEQ = 144, 1987bb01b7b0SPatrick Sanan MATOP_DESTROYSUBMATRICES = 145, 1988e265f6d6SPatrick Sanan MATOP_TRANSPOSE_SOLVE = 146, 1989e265f6d6SPatrick Sanan MATOP_GET_VALUES_LOCAL = 147 1990fae171e0SBarry Smith } MatOperation; 19910c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void)); 1992976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void)); 1993976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *); 199494342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *); 1995d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatProductClear() (since version 3.14)") static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A) 1996d71ae5a4SJacob Faibussowitsch { 19979371c9d4SSatish Balay return MatProductClear(A); 19989371c9d4SSatish Balay } 1999014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void)); 2000014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void)); 2001014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *); 2002800f99ffSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *)); 2003db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType); 2004f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 2005f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 20060c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat); 2007b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType); 2008b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *); 2009112a2221SBarry Smith 201090ace30eSBarry Smith /* 201190ace30eSBarry Smith Codes for matrices stored on disk. By default they are 201290ace30eSBarry Smith stored in a universal format. By changing the format with 20136a9046bcSBarry Smith PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will 201490ace30eSBarry Smith be stored in a way natural for the matrix, for example dense matrices 201590ace30eSBarry Smith would be stored as dense. Matrices stored this way may only be 2016f4403165SShri Abhyankar read into matrices of the same type. 201790ace30eSBarry Smith */ 201890ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1 201990ace30eSBarry Smith 2020014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal); 202175d48cdbSStefano Zampini 20228546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType); 202375d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 202475d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool); 2025f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool); 2026014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *); 20273b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *); 2028014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat); 2029e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 203025ef9dfeSBarry Smith PETSC_EXTERN PETSC_DEPRECATED_FUNCTION("Use the MatConvert() interface (since version 3.10)") PetscErrorCode MatISGetMPIXAIJ(Mat, MatReuse, Mat *); 20311f4e1ec7SBarry Smith 2032d9274352SBarry Smith /*S 2033d9274352SBarry Smith MatNullSpace - Object that removes a null space from a vector, i.e. 2034cb6b9846SMatthew Knepley orthogonalizes the vector to a subspace 2035d9274352SBarry Smith 2036f7a9e4ceSBarry Smith Level: advanced 2037d9274352SBarry Smith 20382ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()` 2039d9274352SBarry Smith S*/ 204074637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace; 2041d9274352SBarry Smith 2042014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *); 2043014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *); 2044014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *); 2045d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec); 2046014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *); 20475fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *); 20485fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace); 2049014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace); 2050014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace); 2051014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *); 2052014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *); 2053014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer); 2054014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **); 2055014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *); 205674637425SBarry Smith 2057014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS); 2058014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal); 2059014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *); 20603f1d51d7SBarry Smith 2061014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *); 2062014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *); 2063014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *); 2064c4f061fbSSatish Balay 20650bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *); 20660bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *); 20670bacdadaSStefano Zampini 2068d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatComputeOperator() (since version 3.12)") static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B) 2069d71ae5a4SJacob Faibussowitsch { 2070f22e26b7SPierre Jolivet return MatComputeOperator(A, PETSC_NULLPTR, B); 20719371c9d4SSatish Balay } 2072d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatComputeOperatorTranspose() (since version 3.12)") static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B) 2073d71ae5a4SJacob Faibussowitsch { 2074f22e26b7SPierre Jolivet return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B); 20759371c9d4SSatish Balay } 2076b0a32e0cSBarry Smith 207749bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *); 207849bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *); 2079a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **); 2080a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2081a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **); 2082a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **); 2083a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **); 2084a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2085a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **); 2086a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **); 2087dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat); 2088dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]); 2089dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]); 2090910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *); 209149bd79ccSDebojyoti Ghosh 2092014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec); 209304f1ad80SBarry Smith 2094014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2095014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec); 2096014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *); 2097014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *)); 2098014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec)); 2099014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt); 2100014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat); 2101014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal); 2102014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt); 2103014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *); 2104014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]); 2105014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *); 2106014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *); 2107e884886fSBarry Smith 21086370053bSBarry Smith /*S 21096370053bSBarry Smith MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free 21106370053bSBarry Smith Jacobian vector products 2111e884886fSBarry Smith 21122ef1f0ffSBarry Smith Level: developer 21132ef1f0ffSBarry Smith 211495452b02SPatrick Sanan Notes: 211587497f52SBarry Smith `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure 21166370053bSBarry Smith 21172ef1f0ffSBarry Smith MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure 21186370053bSBarry Smith 21192ef1f0ffSBarry Smith This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator` 21206370053bSBarry Smith 21212ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`, 21222ef1f0ffSBarry Smith `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator` 21236370053bSBarry Smith S*/ 2124e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD; 2125e884886fSBarry Smith 212676bdecfbSBarry Smith /*J 21272ef1f0ffSBarry Smith MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function 2128e884886fSBarry Smith 212916a05f60SBarry Smith Values: 213016a05f60SBarry Smith + `MATMFFD_DS` - an algorithm described by Dennis and Schnabel 213116a05f60SBarry Smith - `MATMFFD_WP` - the Walker-Pernice strategy. 213216a05f60SBarry Smith 2133e884886fSBarry Smith Level: beginner 2134e884886fSBarry Smith 21352ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()` 213676bdecfbSBarry Smith J*/ 213719fd82e9SBarry Smith typedef const char *MatMFFDType; 2138e884886fSBarry Smith #define MATMFFD_DS "ds" 2139e884886fSBarry Smith #define MATMFFD_WP "wp" 2140e884886fSBarry Smith 214119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType); 2142bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD)); 2143e884886fSBarry Smith 2144014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal); 2145014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool); 2146e884886fSBarry Smith 214761ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType); 214861ab5df0SBarry Smith 2149014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *); 2150014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *); 21517dbadf16SMatthew Knepley 215253022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS 215353022affSStefano Zampini PETSC_EXTERN_TYPEDEF typedef PetscScalar (*MatH2OpusKernel)(PetscInt, PetscReal[], PetscReal[], void *); 215453022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernel, void *, PetscReal, PetscInt, PetscInt, Mat *); 215553022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *); 215653022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal); 215753022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat); 215853022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal); 215953022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool); 216053022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *); 216153022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *); 216253022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *); 2163300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar); 2164a0d2e7d8SStefano Zampini #endif 2165a0d2e7d8SStefano Zampini 2166c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL 216798e73e17SPierre Jolivet PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatHtoolKernel)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *); 2168c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernel, void *, Mat *); 2169c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernel, void *); 217098e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *); 217198e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *); 217298e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool); 21732ef1f0ffSBarry Smith 2174c7a4214aSPierre Jolivet /*E 217587497f52SBarry Smith MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL` 2176c7a4214aSPierre Jolivet 2177c7a4214aSPierre Jolivet Values: 217887497f52SBarry Smith + `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation 217987497f52SBarry Smith . `MAT_HTOOL_COMPRESSOR_FULL_ACA` - full adaptive cross approximation 218087497f52SBarry Smith - `MAT_HTOOL_COMPRESSOR_SVD` - singular value decomposition 2181c7a4214aSPierre Jolivet 218216a05f60SBarry Smith Level: intermediate 218316a05f60SBarry Smith 21842ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType` 2185c7a4214aSPierre Jolivet E*/ 21869371c9d4SSatish Balay typedef enum { 21879371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA, 21889371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_FULL_ACA, 21899371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_SVD 21909371c9d4SSatish Balay } MatHtoolCompressorType; 21912ef1f0ffSBarry Smith 219298e73e17SPierre Jolivet /*E 219387497f52SBarry Smith MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL` 219498e73e17SPierre Jolivet 219598e73e17SPierre Jolivet Values: 219687497f52SBarry Smith + `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default) - axis computed via principle component analysis, split uniformly 219787497f52SBarry Smith . `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC` - axis computed via principle component analysis, split barycentrically 219887497f52SBarry Smith . `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR` - axis along the largest extent of the bounding box, split uniformly 219987497f52SBarry Smith - `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically 220098e73e17SPierre Jolivet 220116a05f60SBarry Smith Level: intermediate 220216a05f60SBarry Smith 22032ef1f0ffSBarry Smith Note: 22042ef1f0ffSBarry Smith Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types 220598e73e17SPierre Jolivet 22062ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType` 220798e73e17SPierre Jolivet E*/ 22089371c9d4SSatish Balay typedef enum { 22099371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_PCA_REGULAR, 22109371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC, 22119371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR, 22129371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC 22139371c9d4SSatish Balay } MatHtoolClusteringType; 2214c7a4214aSPierre Jolivet #endif 2215c7a4214aSPierre Jolivet 221697969023SHong Zhang #ifdef PETSC_HAVE_MUMPS 2217014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt); 2218bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *); 2219b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal); 2220bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *); 2221bc6112feSHong Zhang 2222ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *); 2223ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *); 2224ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *); 2225ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *); 22265c0bae8cSAshish Patel PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **); 222789a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat); 22280e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat); 222997969023SHong Zhang #endif 223023a5497aSJed Brown 2231b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO 2232d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt); 2233b500a6b7SJose David Bermeol #endif 2234b500a6b7SJose David Bermeol 2235d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO 2236d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt); 2237d305a81bSVasiliy Kozyrev #endif 2238d305a81bSVasiliy Kozyrev 2239d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU 2240014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal); 2241d954db57SHong Zhang #endif 2242d954db57SHong Zhang 2243fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST 2244fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *); 2245fb785984SHong Zhang #endif 2246fb785984SHong Zhang 2247575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK 2248542aee0fSPieter Ghysels /*E 22492ef1f0ffSBarry Smith MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK`` 2250542aee0fSPieter Ghysels 22512ef1f0ffSBarry Smith Values: 22522ef1f0ffSBarry Smith + `MAT_STRUMPACK_NATURAL` - use the current ordering 22532ef1f0ffSBarry Smith . `MAT_STRUMPACK_METIS` - use MeTis to compute an ordering 22542ef1f0ffSBarry Smith . `MAT_STRUMPACK_PARMETIS` - use ParMeTis to compute an ordering 22552ef1f0ffSBarry Smith . `MAT_STRUMPACK_SCOTCH` - use Scotch to compute an ordering 22562ef1f0ffSBarry Smith . `MAT_STRUMPACK_PTSCOTCH` - use parallel Scotch to compute an ordering 22572ef1f0ffSBarry Smith - `MAT_STRUMPACK_RCM` - use an RCM ordering 22582ef1f0ffSBarry Smith 225916a05f60SBarry Smith Level: intermediate 226016a05f60SBarry Smith 22612ef1f0ffSBarry Smith Developer Note: 22622ef1f0ffSBarry Smith Should be called `MatSTRUMPACKReorderingType` 22632ef1f0ffSBarry Smith 22642ef1f0ffSBarry Smith .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetHSSRelTol()`, `MatSTRUMPACKSetReordering()` 2265542aee0fSPieter Ghysels E*/ 22669371c9d4SSatish Balay typedef enum { 22679371c9d4SSatish Balay MAT_STRUMPACK_NATURAL = 0, 226834f43fa5SPieter Ghysels MAT_STRUMPACK_METIS = 1, 226934f43fa5SPieter Ghysels MAT_STRUMPACK_PARMETIS = 2, 227034f43fa5SPieter Ghysels MAT_STRUMPACK_SCOTCH = 3, 227134f43fa5SPieter Ghysels MAT_STRUMPACK_PTSCOTCH = 4, 22729371c9d4SSatish Balay MAT_STRUMPACK_RCM = 5 22739371c9d4SSatish Balay } MatSTRUMPACKReordering; 22742ef1f0ffSBarry Smith 227534f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering); 2276575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool); 227734f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSRelTol(Mat, PetscReal); 2278d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSTRUMPACKSetHSSRelTol() (since version 3.9)") static inline PetscErrorCode MatSTRUMPACKSetHSSRelCompTol(Mat mat, PetscReal rtol) 2279d71ae5a4SJacob Faibussowitsch { 22809371c9d4SSatish Balay return MatSTRUMPACKSetHSSRelTol(mat, rtol); 22819371c9d4SSatish Balay } 228234f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSAbsTol(Mat, PetscReal); 228334f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMinSepSize(Mat, PetscInt); 2284d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSTRUMPACKSetHSSMinSepSize() (since version 3.9)") static inline PetscErrorCode MatSTRUMPACKSetHSSMinSize(Mat mat, PetscInt hssminsize) 2285d71ae5a4SJacob Faibussowitsch { 22869371c9d4SSatish Balay return MatSTRUMPACKSetHSSMinSepSize(mat, hssminsize); 22879371c9d4SSatish Balay } 228834f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMaxRank(Mat, PetscInt); 2289a36bf211SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSLeafSize(Mat, PetscInt); 2290575704cbSPieter Ghysels #endif 2291575704cbSPieter Ghysels 2292b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool); 22932216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *); 2294d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatBindToCPU (since v3.13)") static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg) 2295d71ae5a4SJacob Faibussowitsch { 22969371c9d4SSatish Balay return MatBindToCPU(A, flg); 22979371c9d4SSatish Balay } 229865a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool); 2299e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *); 2300e7e92044SBarry Smith 2301aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA 23023f9c0db1SPaul Mullowney /*E 23032ef1f0ffSBarry Smith MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU) 23042692e278SPaul Mullowney matrices. 2305e057df02SPaul Mullowney 23062ef1f0ffSBarry Smith Values: 230787497f52SBarry Smith + `MAT_CUSPARSE_CSR` - Compressed Sparse Row 230887497f52SBarry Smith . `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later). 230987497f52SBarry Smith - `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later). 2310e057df02SPaul Mullowney 2311e057df02SPaul Mullowney Level: intermediate 2312e057df02SPaul Mullowney 23132ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation` 2314e057df02SPaul Mullowney E*/ 2315e057df02SPaul Mullowney 23169371c9d4SSatish Balay typedef enum { 23179371c9d4SSatish Balay MAT_CUSPARSE_CSR, 23189371c9d4SSatish Balay MAT_CUSPARSE_ELL, 23199371c9d4SSatish Balay MAT_CUSPARSE_HYB 23209371c9d4SSatish Balay } MatCUSPARSEStorageFormat; 2321e057df02SPaul Mullowney 2322e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */ 2323e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[]; 2324e057df02SPaul Mullowney 23253f9c0db1SPaul Mullowney /*E 23262ef1f0ffSBarry Smith MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU) 23272692e278SPaul Mullowney matrices whose operation should use a particular storage format. 2328e057df02SPaul Mullowney 23292ef1f0ffSBarry Smith Values: 233087497f52SBarry Smith + `MAT_CUSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel MatMult 233187497f52SBarry Smith . `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel MatMult 233287497f52SBarry Smith . `MAT_CUSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) MatMult 23332ef1f0ffSBarry Smith - `MAT_CUSPARSE_ALL` - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices 2334e057df02SPaul Mullowney 2335e057df02SPaul Mullowney Level: intermediate 2336e057df02SPaul Mullowney 23372ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat` 2338e057df02SPaul Mullowney E*/ 23399371c9d4SSatish Balay typedef enum { 23409371c9d4SSatish Balay MAT_CUSPARSE_MULT_DIAG, 23419371c9d4SSatish Balay MAT_CUSPARSE_MULT_OFFDIAG, 23429371c9d4SSatish Balay MAT_CUSPARSE_MULT, 23439371c9d4SSatish Balay MAT_CUSPARSE_ALL 23449371c9d4SSatish Balay } MatCUSPARSEFormatOperation; 2345e057df02SPaul Mullowney 234610e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 234710e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2348e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat); 2349365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool); 23505f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 23515f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 23525f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **); 23535f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **); 23545f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **); 23555f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **); 23565f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **); 23575f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **); 2358637a0070SStefano Zampini 2359637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 2360637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 2361637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **); 2362637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **); 2363637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **); 2364637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **); 2365637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **); 2366637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **); 2367637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *); 2368d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *); 2369637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat); 23703d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *); 23712d1451d4SHong Zhang 23722d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 23732d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 23749ae82921SPaul Mullowney #endif 23759ae82921SPaul Mullowney 237647d993e7Ssuyashtn #ifdef PETSC_HAVE_HIP 237747d993e7Ssuyashtn /*E 23782ef1f0ffSBarry Smith MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU) 237947d993e7Ssuyashtn matrices. 238047d993e7Ssuyashtn 23812ef1f0ffSBarry Smith Values: 23822ef1f0ffSBarry Smith + `MAT_HIPSPARSE_CSR` - Compressed Sparse Row 23832ef1f0ffSBarry Smith . `MAT_HIPSPARSE_ELL` - Ellpack 23842ef1f0ffSBarry Smith - `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format 238547d993e7Ssuyashtn 238616a05f60SBarry Smith Level: intermediate 238716a05f60SBarry Smith 23882ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation` 238947d993e7Ssuyashtn E*/ 239047d993e7Ssuyashtn 239147d993e7Ssuyashtn typedef enum { 239247d993e7Ssuyashtn MAT_HIPSPARSE_CSR, 239347d993e7Ssuyashtn MAT_HIPSPARSE_ELL, 239447d993e7Ssuyashtn MAT_HIPSPARSE_HYB 239547d993e7Ssuyashtn } MatHIPSPARSEStorageFormat; 239647d993e7Ssuyashtn 239747d993e7Ssuyashtn /* these will be strings associated with enumerated type defined above */ 239847d993e7Ssuyashtn PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[]; 239947d993e7Ssuyashtn 240047d993e7Ssuyashtn /*E 24012ef1f0ffSBarry Smith MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU) 240247d993e7Ssuyashtn matrices whose operation should use a particular storage format. 240347d993e7Ssuyashtn 24042ef1f0ffSBarry Smith Values: 24052ef1f0ffSBarry Smith + `MAT_HIPSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()` 2406eb495b2aSPierre Jolivet . `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel `MatMult()` 24072ef1f0ffSBarry Smith . `MAT_HIPSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()` 24082ef1f0ffSBarry Smith - `MAT_HIPSPARSE_ALL` - sets the storage format for all HIPSPARSE (GPU) matrices 24092ef1f0ffSBarry Smith 241016a05f60SBarry Smith Level: intermediate 241116a05f60SBarry Smith 24122ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat` 241347d993e7Ssuyashtn E*/ 241447d993e7Ssuyashtn typedef enum { 241547d993e7Ssuyashtn MAT_HIPSPARSE_MULT_DIAG, 241647d993e7Ssuyashtn MAT_HIPSPARSE_MULT_OFFDIAG, 241747d993e7Ssuyashtn MAT_HIPSPARSE_MULT, 241847d993e7Ssuyashtn MAT_HIPSPARSE_ALL 241947d993e7Ssuyashtn } MatHIPSPARSEFormatOperation; 242047d993e7Ssuyashtn 242147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 242247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 242347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat); 242447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool); 242547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 242647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 242747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **); 242847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **); 242947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **); 243047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **); 243147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **); 243247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **); 243347d993e7Ssuyashtn 243447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 243547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 243647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **); 243747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **); 243847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **); 243947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **); 244047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **); 244147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **); 244247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *); 244347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *); 244447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat); 24453d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *); 244647d993e7Ssuyashtn #endif 244747d993e7Ssuyashtn 2448d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL) 2449d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2450d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2451d67ff14aSKarl Rupp #endif 2452d67ff14aSKarl Rupp 245354efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW) 2454014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec); 2455014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec); 24562a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *); 245754efbe56SHong Zhang #endif 245854efbe56SHong Zhang 2459d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 2460d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2461d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt); 2462d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *); 2463d24d4204SJose E. Roman #endif 2464d24d4204SJose E. Roman 2465014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *); 2466014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *); 2467014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]); 2468014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]); 2469014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***); 2470014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *); 247119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType); 2472014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]); 2473014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat); 2474d8588912SDave May 24754325cce7SMatthew G Knepley PETSC_EXTERN PetscErrorCode MatChop(Mat, PetscReal); 2476e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *); 24774325cce7SMatthew G Knepley 2478b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **); 247953dd7562SDmitry Karpeev 2480c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat); 2481c094ef40SMatthew G. Knepley 2482539c167fSBarry Smith PETSC_INTERN PetscErrorCode MatHeaderMerge(Mat, Mat *); 2483539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *); 24841a2c6b5cSJunchao Zhang 24857ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *); 248672833a62Smarkadams4 24872d776b49SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, Mat *); 2488dec0b466SHong Zhang PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat); 2489ad6ad4e1SHansol Suh 2490d16ceb75SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *); 249123a5497aSJed Brown #endif 2492