12eac72dbSBarry Smith /* 22eac72dbSBarry Smith Include file for the matrix component of PETSc 32eac72dbSBarry Smith */ 4a4963045SJacob Faibussowitsch #pragma once 5ac09b921SBarry Smith 62c8e378dSBarry Smith #include <petscvec.h> 72eac72dbSBarry Smith 8ac09b921SBarry Smith /* SUBMANSEC = Mat */ 9ac09b921SBarry Smith 10d9274352SBarry Smith /*S 118f6c3df8SBarry Smith Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without 12af27ebaaSBarry Smith an explicit sparse representation (such as matrix-free operators). Also used to hold representations of graphs 13af27ebaaSBarry Smith for graph operations such as coloring, `MatColoringCreate()` 142eac72dbSBarry Smith 15d91e6319SBarry Smith Level: beginner 16d91e6319SBarry Smith 172ef1f0ffSBarry Smith Note: 181cc06b55SBarry Smith See [](doc_matrix), [](ch_matrices) and `MatType` for available matrix types 192ef1f0ffSBarry Smith 201cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()` 21d9274352SBarry Smith S*/ 22d9274352SBarry Smith typedef struct _p_Mat *Mat; 23d9274352SBarry Smith 2476bdecfbSBarry Smith /*J 250b4b7b1cSBarry Smith MatType - String with the name of a PETSc matrix type. These are all the matrix formats that PETSc provides. 26d9274352SBarry Smith 27d9274352SBarry Smith Level: beginner 28d9274352SBarry Smith 290b4b7b1cSBarry Smith Notes: 302ef1f0ffSBarry Smith [](doc_matrix) for a table of available matrix types 312ef1f0ffSBarry Smith 32ce78bad3SBarry Smith Use `MatSetType()` or the options database keys `-mat_type` or `-dm_mat_type` to set the matrix format to use for a given `Mat` 330b4b7b1cSBarry Smith 341cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()` 3576bdecfbSBarry Smith J*/ 3619fd82e9SBarry Smith typedef const char *MatType; 37273d9f13SBarry Smith #define MATSAME "same" 385a11e1b2SBarry Smith #define MATMAIJ "maij" 39273d9f13SBarry Smith #define MATSEQMAIJ "seqmaij" 40273d9f13SBarry Smith #define MATMPIMAIJ "mpimaij" 4149bd79ccSDebojyoti Ghosh #define MATKAIJ "kaij" 4249bd79ccSDebojyoti Ghosh #define MATSEQKAIJ "seqkaij" 4349bd79ccSDebojyoti Ghosh #define MATMPIKAIJ "mpikaij" 44273d9f13SBarry Smith #define MATIS "is" 455a11e1b2SBarry Smith #define MATAIJ "aij" 46273d9f13SBarry Smith #define MATSEQAIJ "seqaij" 47273d9f13SBarry Smith #define MATMPIAIJ "mpiaij" 485a11e1b2SBarry Smith #define MATAIJCRL "aijcrl" 495a11e1b2SBarry Smith #define MATSEQAIJCRL "seqaijcrl" 505a11e1b2SBarry Smith #define MATMPIAIJCRL "mpiaijcrl" 519ae82921SPaul Mullowney #define MATAIJCUSPARSE "aijcusparse" 529ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE "seqaijcusparse" 539ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE "mpiaijcusparse" 5447d993e7Ssuyashtn #define MATAIJHIPSPARSE "aijhipsparse" 5547d993e7Ssuyashtn #define MATSEQAIJHIPSPARSE "seqaijhipsparse" 5647d993e7Ssuyashtn #define MATMPIAIJHIPSPARSE "mpiaijhipsparse" 578c3ff71bSJunchao Zhang #define MATAIJKOKKOS "aijkokkos" 588c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS "seqaijkokkos" 598c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS "mpiaijkokkos" 60d67ff14aSKarl Rupp #define MATAIJVIENNACL "aijviennacl" 61d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL "seqaijviennacl" 62d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL "mpiaijviennacl" 635a11e1b2SBarry Smith #define MATAIJPERM "aijperm" 645a11e1b2SBarry Smith #define MATSEQAIJPERM "seqaijperm" 655a11e1b2SBarry Smith #define MATMPIAIJPERM "mpiaijperm" 664dfdc2d9SRichard Tran Mills #define MATAIJSELL "aijsell" 674dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL "seqaijsell" 684dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL "mpiaijsell" 694a2a386eSRichard Tran Mills #define MATAIJMKL "aijmkl" 704a2a386eSRichard Tran Mills #define MATSEQAIJMKL "seqaijmkl" 714a2a386eSRichard Tran Mills #define MATMPIAIJMKL "mpiaijmkl" 72b5b72c8aSIrina Sokolova #define MATBAIJMKL "baijmkl" 73b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL "seqbaijmkl" 74b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL "mpibaijmkl" 75273d9f13SBarry Smith #define MATSHELL "shell" 76c1fff1c6SRichard Tran Mills #define MATCENTERING "centering" 775a11e1b2SBarry Smith #define MATDENSE "dense" 78637a0070SStefano Zampini #define MATDENSECUDA "densecuda" 7947d993e7Ssuyashtn #define MATDENSEHIP "densehip" 80209238afSKris Buschelman #define MATSEQDENSE "seqdense" 81bfc799aaSStefano Zampini #define MATSEQDENSECUDA "seqdensecuda" 8247d993e7Ssuyashtn #define MATSEQDENSEHIP "seqdensehip" 83273d9f13SBarry Smith #define MATMPIDENSE "mpidense" 84637a0070SStefano Zampini #define MATMPIDENSECUDA "mpidensecuda" 8547d993e7Ssuyashtn #define MATMPIDENSEHIP "mpidensehip" 86db31f6deSJed Brown #define MATELEMENTAL "elemental" 87d24d4204SJose E. Roman #define MATSCALAPACK "scalapack" 885a11e1b2SBarry Smith #define MATBAIJ "baij" 89273d9f13SBarry Smith #define MATSEQBAIJ "seqbaij" 90273d9f13SBarry Smith #define MATMPIBAIJ "mpibaij" 91273d9f13SBarry Smith #define MATMPIADJ "mpiadj" 925a11e1b2SBarry Smith #define MATSBAIJ "sbaij" 93273d9f13SBarry Smith #define MATSEQSBAIJ "seqsbaij" 94273d9f13SBarry Smith #define MATMPISBAIJ "mpisbaij" 95cebc7f6cSBarry Smith #define MATMFFD "mffd" 96c8a8475eSBarry Smith #define MATNORMAL "normal" 97c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN "normalh" 98ab92ecdeSBarry Smith #define MATLRC "lrc" 992a6744ebSBarry Smith #define MATSCATTER "scatter" 100421e10b8SBarry Smith #define MATBLOCKMAT "blockmat" 101793850ffSBarry Smith #define MATCOMPOSITE "composite" 1021f8c7532SHong Zhang #define MATFFT "fft" 1031f8c7532SHong Zhang #define MATFFTW "fftw" 104e133240eSMatthew G Knepley #define MATSEQCUFFT "seqcufft" 10547d993e7Ssuyashtn #define MATSEQHIPFFT "seqhipfft" 106edd03b47SJacob Faibussowitsch #define MATTRANSPOSEMAT PETSC_DEPRECATED_MACRO(3, 18, 0, "MATTRANSPOSEVIRTUAL", ) "transpose" 107013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL "transpose" 108013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose" 10972ca8751SBarry Smith #define MATSCHURCOMPLEMENT "schurcomplement" 1101d6018f0SLisandro Dalcin #define MATPYTHON "python" 11163c07aadSStefano Zampini #define MATHYPRE "hypre" 112f91d8e95SBarry Smith #define MATHYPRESTRUCT "hyprestruct" 113a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT "hypresstruct" 114ee1cef2cSJed Brown #define MATSUBMATRIX "submatrix" 1152c0dbf93SJed Brown #define MATLOCALREF "localref" 116d8588912SDave May #define MATNEST "nest" 117c094ef40SMatthew G. Knepley #define MATPREALLOCATOR "preallocator" 118d4002b98SHong Zhang #define MATSELL "sell" 119d4002b98SHong Zhang #define MATSEQSELL "seqsell" 120d4002b98SHong Zhang #define MATMPISELL "mpisell" 1212d1451d4SHong Zhang #define MATSELLCUDA "sellcuda" 1222d1451d4SHong Zhang #define MATSEQSELLCUDA "seqsellcuda" 1232d1451d4SHong Zhang #define MATMPISELLCUDA "mpisellcuda" 124773bf0f6SHong Zhang #define MATSELLHIP "sellhip" 125773bf0f6SHong Zhang #define MATSEQSELLHIP "seqsellhip" 126773bf0f6SHong Zhang #define MATMPISELLHIP "mpisellhip" 127a3b2e22bSHong Zhang #define MATDUMMY "dummy" 128cd929ea3SAlp Dener #define MATLMVM "lmvm" 12978e4361aSAlp Dener #define MATLMVMDFP "lmvmdfp" 130bbb72809SHansol Suh #define MATLMVMDDFP "lmvmddfp" 13178e4361aSAlp Dener #define MATLMVMBFGS "lmvmbfgs" 132bbb72809SHansol Suh #define MATLMVMDBFGS "lmvmdbfgs" 133bbb72809SHansol Suh #define MATLMVMDQN "lmvmdqn" 13478e4361aSAlp Dener #define MATLMVMSR1 "lmvmsr1" 135864588a7SAlp Dener #define MATLMVMBROYDEN "lmvmbroyden" 136864588a7SAlp Dener #define MATLMVMBADBROYDEN "lmvmbadbroyden" 137864588a7SAlp Dener #define MATLMVMSYMBROYDEN "lmvmsymbroyden" 138864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN "lmvmsymbadbroyden" 139864588a7SAlp Dener #define MATLMVMDIAGBROYDEN "lmvmdiagbroyden" 1403423f386SBarry Smith #define MATCONSTANTDIAGONAL "constantdiagonal" 141345a4b08SToby Isaac #define MATDIAGONAL "diagonal" 142c7a4214aSPierre Jolivet #define MATHTOOL "htool" 14353022affSStefano Zampini #define MATH2OPUS "h2opus" 144773941d6SBarry Smith 14576bdecfbSBarry Smith /*J 146af27ebaaSBarry Smith MatSolverType - String with the name of a PETSc factorization-based matrix solver type. 1479989ab13SBarry Smith 148c2b89b5dSBarry Smith For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc 1499989ab13SBarry Smith 1509989ab13SBarry Smith Level: beginner 1519989ab13SBarry Smith 1522ef1f0ffSBarry Smith Note: 15316a05f60SBarry Smith `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as 15416a05f60SBarry Smith a ./configure option to install them 155c7ccbb75SBarry Smith 1561cc06b55SBarry Smith .seealso: [](sec_matfactor), [](ch_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()` 15776bdecfbSBarry Smith J*/ 158ea799195SBarry Smith typedef const char *MatSolverType; 1592692d6eeSBarry Smith #define MATSOLVERSUPERLU "superlu" 1602692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST "superlu_dist" 16108f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK "strumpack" 1622692d6eeSBarry Smith #define MATSOLVERUMFPACK "umfpack" 16320db9a53SJed Brown #define MATSOLVERCHOLMOD "cholmod" 164d89f5e7aSBarry Smith #define MATSOLVERKLU "klu" 165d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL "elemental" 166d24d4204SJose E. Roman #define MATSOLVERSCALAPACK "scalapack" 1672692d6eeSBarry Smith #define MATSOLVERESSL "essl" 1682692d6eeSBarry Smith #define MATSOLVERLUSOL "lusol" 1692692d6eeSBarry Smith #define MATSOLVERMUMPS "mumps" 170d615f992SSatish Balay #define MATSOLVERMKL_PARDISO "mkl_pardiso" 171d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO "mkl_cpardiso" 1722692d6eeSBarry Smith #define MATSOLVERPASTIX "pastix" 1732692d6eeSBarry Smith #define MATSOLVERMATLAB "matlab" 1742692d6eeSBarry Smith #define MATSOLVERPETSC "petsc" 1752692d6eeSBarry Smith #define MATSOLVERBAS "bas" 1769ae82921SPaul Mullowney #define MATSOLVERCUSPARSE "cusparse" 177bfc799aaSStefano Zampini #define MATSOLVERCUDA "cuda" 17847d993e7Ssuyashtn #define MATSOLVERHIPSPARSE "hipsparse" 17947d993e7Ssuyashtn #define MATSOLVERHIP "hip" 180930e68a5SMark Adams #define MATSOLVERKOKKOS "kokkos" 181a2fc1e05SToby Isaac #define MATSOLVERSPQR "spqr" 1821dd4f53aSPierre Jolivet #define MATSOLVERHTOOL "htool" 183c0cdd4a1SDahai Guo 184b24902e0SBarry Smith /*E 185b24902e0SBarry Smith MatFactorType - indicates what type of factorization is requested 186b24902e0SBarry Smith 1872ef1f0ffSBarry Smith Values: 1882ef1f0ffSBarry Smith + `MAT_FACTOR_LU` - LU factorization 1892ef1f0ffSBarry Smith . `MAT_FACTOR_CHOLESKY` - Cholesky factorization 1902ef1f0ffSBarry Smith . `MAT_FACTOR_ILU` - ILU factorization 1912ef1f0ffSBarry Smith . `MAT_FACTOR_ICC` - incomplete Cholesky factorization 1922ef1f0ffSBarry Smith . `MAT_FACTOR_ILUDT` - ILU factorization with drop tolerance 1932ef1f0ffSBarry Smith - `MAT_FACTOR_QR` - QR factorization 194b24902e0SBarry Smith 19516a05f60SBarry Smith Level: beginner 19616a05f60SBarry Smith 1971cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()` 198b24902e0SBarry Smith E*/ 1999371c9d4SSatish Balay typedef enum { 2009371c9d4SSatish Balay MAT_FACTOR_NONE, 2019371c9d4SSatish Balay MAT_FACTOR_LU, 2029371c9d4SSatish Balay MAT_FACTOR_CHOLESKY, 2039371c9d4SSatish Balay MAT_FACTOR_ILU, 2049371c9d4SSatish Balay MAT_FACTOR_ICC, 2059371c9d4SSatish Balay MAT_FACTOR_ILUDT, 2069371c9d4SSatish Balay MAT_FACTOR_QR, 2079371c9d4SSatish Balay MAT_FACTOR_NUM_TYPES 2089371c9d4SSatish Balay } MatFactorType; 209014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[]; 210e92e720dSBarry Smith 211ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *); 212ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *); 213f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *); 214edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 15, 0, "MatFactorGetCanUseOrdering()", ) static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b) 215d71ae5a4SJacob Faibussowitsch { 2169371c9d4SSatish Balay return MatFactorGetCanUseOrdering(A, b); 2179371c9d4SSatish Balay } 218ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *); 219014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *); 2207abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType); 2218434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode(MatSolverFn)(Mat, MatFactorType, Mat *); 2228434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatSolverFn *MatSolverFunction; 22307e0ed13SBarry Smith 2248434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFn *); 2258434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFn **); 226edd03b47SJacob Faibussowitsch typedef MatSolverType MatSolverPackage PETSC_DEPRECATED_TYPEDEF(3, 9, 0, "MatSolverType", ); 2278434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeRegister()", ) static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFn *f) 228d71ae5a4SJacob Faibussowitsch { 2299371c9d4SSatish Balay return MatSolverTypeRegister(stype, mtype, ftype, f); 2309371c9d4SSatish Balay } 2318434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeGet()", ) static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFn **f) 232d71ae5a4SJacob Faibussowitsch { 2339371c9d4SSatish Balay return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f); 2349371c9d4SSatish Balay } 2359989ab13SBarry Smith 2364222ddf1SHong Zhang /*E 23795bd0b28SBarry Smith MatProductType - indicates what type of matrix product to compute 2384222ddf1SHong Zhang 2392ef1f0ffSBarry Smith Values: 2402ef1f0ffSBarry Smith + `MATPRODUCT_AB` - product of two matrices 2412ef1f0ffSBarry Smith . `MATPRODUCT_AtB` - product of the transpose of a given matrix with a matrix 2422ef1f0ffSBarry Smith . `MATPRODUCT_ABt` - product of a matrix with the transpose of another given matrix 2432ef1f0ffSBarry Smith . `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself 2442ef1f0ffSBarry Smith . `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix 2452ef1f0ffSBarry Smith - `MATPRODUCT_ABC` - the product of three matrices 2462ef1f0ffSBarry Smith 24716a05f60SBarry Smith Level: beginner 24816a05f60SBarry Smith 2491cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatProductSetType()` 2504222ddf1SHong Zhang E*/ 2519371c9d4SSatish Balay typedef enum { 252ce78bad3SBarry Smith MATPRODUCT_UNSPECIFIED, 2539371c9d4SSatish Balay MATPRODUCT_AB, 2549371c9d4SSatish Balay MATPRODUCT_AtB, 2559371c9d4SSatish Balay MATPRODUCT_ABt, 2569371c9d4SSatish Balay MATPRODUCT_PtAP, 2579371c9d4SSatish Balay MATPRODUCT_RARt, 2589371c9d4SSatish Balay MATPRODUCT_ABC 2599371c9d4SSatish Balay } MatProductType; 260544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[]; 2614222ddf1SHong Zhang 2624222ddf1SHong Zhang /*J 2634222ddf1SHong Zhang MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation 2644222ddf1SHong Zhang 2654222ddf1SHong Zhang Level: beginner 2664222ddf1SHong Zhang 2671cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType` 2684222ddf1SHong Zhang J*/ 2694222ddf1SHong Zhang typedef const char *MatProductAlgorithm; 2703e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT "default" 2713e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED "sorted" 2723e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE "scalable" 2733e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST "scalable_fast" 2743e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP "heap" 2753e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP "btheap" 2763e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED "llcondensed" 2773e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE "rowmerge" 2783e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT "outerproduct" 2793e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB "at*b" 2803e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP "rap" 2813e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE "nonscalable" 2823e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI "seqmpi" 2833e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND "backend" 2843e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING "overlapping" 2853e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED "merged" 2863e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE "allatonce" 2873e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged" 2883e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV "allgatherv" 2893e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC "cyclic" 2903e662e0bSHong Zhang #define MATPRODUCTALGORITHMHYPRE "hypre" 2914222ddf1SHong Zhang 2924222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *); 2934222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat); 2944222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType); 2954222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm); 2968fcac130SJose E. Roman PETSC_EXTERN PetscErrorCode MatProductGetAlgorithm(Mat, MatProductAlgorithm *); 2974222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal); 2984222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat); 2994222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat); 3004222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat); 3014222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat); 3024417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat); 3036718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer); 304c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *); 305c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *); 3064222ddf1SHong Zhang 307c06d978dSMatthew Knepley /* Logging support */ 3080700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */ 309014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID; 310335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID; 311014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID; 312014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID; 313014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID; 314014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID; 315014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID; 316014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID; 317c06d978dSMatthew Knepley 318ceb03754SKris Buschelman /*E 3192ef1f0ffSBarry Smith MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions 320cf37664fSBarry Smith are to be reused to store the new matrix values. 321cf37664fSBarry Smith 3222ef1f0ffSBarry Smith Values: 3232ef1f0ffSBarry Smith + `MAT_INITIAL_MATRIX` - create a new matrix 3242ef1f0ffSBarry Smith . `MAT_REUSE_MATRIX` - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX` 3252ef1f0ffSBarry Smith . `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions) 3262ef1f0ffSBarry Smith - `MAT_IGNORE_MATRIX` - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions) 327ceb03754SKris Buschelman 328ceb03754SKris Buschelman Level: beginner 329ceb03754SKris Buschelman 3301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()` 331ceb03754SKris Buschelman E*/ 3329371c9d4SSatish Balay typedef enum { 3339371c9d4SSatish Balay MAT_INITIAL_MATRIX, 3349371c9d4SSatish Balay MAT_REUSE_MATRIX, 3359371c9d4SSatish Balay MAT_IGNORE_MATRIX, 3369371c9d4SSatish Balay MAT_INPLACE_MATRIX 3379371c9d4SSatish Balay } MatReuse; 338ceb03754SKris Buschelman 3395494a064SHong Zhang /*E 3402ef1f0ffSBarry Smith MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()` 3412ef1f0ffSBarry Smith include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`. 3425494a064SHong Zhang 3432ef1f0ffSBarry Smith Values: 3442ef1f0ffSBarry Smith + `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values 3452ef1f0ffSBarry Smith - `MAT_GET_VALUES` - copy the matrix values 3462ef1f0ffSBarry Smith 34795bd0b28SBarry Smith Level: developer 34895bd0b28SBarry Smith 3492ef1f0ffSBarry Smith Developer Note: 3502ef1f0ffSBarry Smith Why is not just a boolean used for this information? 3512ef1f0ffSBarry Smith 3521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()` 3535494a064SHong Zhang E*/ 3549371c9d4SSatish Balay typedef enum { 3559371c9d4SSatish Balay MAT_DO_NOT_GET_VALUES, 3569371c9d4SSatish Balay MAT_GET_VALUES 3579371c9d4SSatish Balay } MatCreateSubMatrixOption; 3585494a064SHong Zhang 359607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void); 3604bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatFinalizePackage(void); 361c06d978dSMatthew Knepley 362014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *); 36377433607SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFromOptions(MPI_Comm, const char *, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt); 36519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType); 3660d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *); 3670d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType); 368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat); 369fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]); 370bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat)); 37123bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]); 372014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]); 37326cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]); 37426cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]); 375014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]); 376014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]); 3775d5d24bbSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatGetState(Mat, PetscObjectState *); 37884d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool); 379f69a0ea3SMatthew Knepley 380140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList; 381140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList; 382140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList; 38328988994SBarry Smith 3843b224e63SBarry Smith /*E 385aa6c7ce3SBarry Smith MatStructure - Indicates if two matrices have the same nonzero structure 3863b224e63SBarry Smith 3872ef1f0ffSBarry Smith Values: 3882ef1f0ffSBarry Smith + `SAME_NONZERO_PATTERN` - the two matrices have identical nonzero patterns 3892ef1f0ffSBarry Smith . `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns 3902ef1f0ffSBarry Smith . `SUBSET_NONZERO_PATTERN` - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix 3912ef1f0ffSBarry Smith - `UNKNOWN_NONZERO_PATTERN` - there is no known relationship between the nonzero patterns. In this case the implementations 3922ef1f0ffSBarry Smith may try to detect a relationship to optimize the operation 393531d0c6aSBarry Smith 39416a05f60SBarry Smith Level: beginner 39516a05f60SBarry Smith 396af27ebaaSBarry Smith Note: 397af27ebaaSBarry Smith Certain matrix operations (such as `MatAXPY()`) can run much faster if the sparsity pattern of the matrices are the same. But actually determining if 398af27ebaaSBarry Smith the patterns are the same may be costly. This provides a way for users who know something about the sparsity patterns to provide this information 399af27ebaaSBarry Smith to certain PETSc routines. 400af27ebaaSBarry Smith 4011cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()` 4023b224e63SBarry Smith E*/ 4039371c9d4SSatish Balay typedef enum { 4049371c9d4SSatish Balay DIFFERENT_NONZERO_PATTERN, 4059371c9d4SSatish Balay SUBSET_NONZERO_PATTERN, 4069371c9d4SSatish Balay SAME_NONZERO_PATTERN, 4079371c9d4SSatish Balay UNKNOWN_NONZERO_PATTERN 4089371c9d4SSatish Balay } MatStructure; 409d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[]; 4103b224e63SBarry Smith 4119779e05dSSatish Balay #if defined PETSC_HAVE_MKL_SPARSE 412ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 413ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 41480095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 415ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 41680095d54SIrina Sokolova #endif 417cd929ea3SAlp Dener 4184bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 4194bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 4204bf303faSJacob Faibussowitsch 421d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 422d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 423d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]); 424d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 42507e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *); 42607e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *); 42707e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *); 42807e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt); 429b921024eSHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *); 43080095d54SIrina Sokolova 4314bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 4324bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 433fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *); 434fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetSeqSELL(Mat, Mat *, Mat *, const PetscInt *[]); 4354bf303faSJacob Faibussowitsch 436014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 437014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 438014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 439014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 440014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 4418f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 4426a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]); 443014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *); 444c0c276a7Ssdargavi PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, PetscInt, PetscInt, Mat, Mat, PetscInt *, Mat *); 4453b00a383SHong Zhang 446014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 447014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 448014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 4497e8381f9SStefano Zampini 450e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]); 45182a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]); 4527e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode); 453d21a29f3SJed Brown 454014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *); 455014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 456d21a29f3SJed Brown 457014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 458014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 45938f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 460014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 4614cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]); 462dfb205c3SBarry Smith 463014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *); 464c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *); 465014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *); 466c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *); 467986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *); 468267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *); 469bcf2175cSMatthew Knepley PETSC_EXTERN PetscErrorCode MatLRCSetMats(Mat, Mat, Mat, Vec, Mat); 470c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *); 471014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 472014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 473c0cdd4a1SDahai Guo 474014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *); 475014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter); 476014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *); 477014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *); 478014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat); 479014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat); 4809371c9d4SSatish Balay typedef enum { 4819371c9d4SSatish Balay MAT_COMPOSITE_MERGE_RIGHT, 4829371c9d4SSatish Balay MAT_COMPOSITE_MERGE_LEFT 4839371c9d4SSatish Balay } MatCompositeMergeType; 4848c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType); 485014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *); 4860da935d5SPierre Jolivet /*E 4870da935d5SPierre Jolivet MatCompositeType - indicates what type of `MATCOMPOSITE` is used 4880da935d5SPierre Jolivet 4890da935d5SPierre Jolivet Values: 4900da935d5SPierre Jolivet + `MAT_COMPOSITE_ADDITIVE` - sum of matrices (default) 4910da935d5SPierre Jolivet - `MAT_COMPOSITE_MULTIPLICATIVE` - product of matrices 4920da935d5SPierre Jolivet 4930da935d5SPierre Jolivet Level: beginner 4940da935d5SPierre Jolivet 4950da935d5SPierre Jolivet .seealso: [](ch_matrices), `MATCOMPOSITE`, `MatCompositeSetType()`, `MatCompositeGetType()` 4960da935d5SPierre Jolivet E*/ 4979371c9d4SSatish Balay typedef enum { 4989371c9d4SSatish Balay MAT_COMPOSITE_ADDITIVE, 4999371c9d4SSatish Balay MAT_COMPOSITE_MULTIPLICATIVE 5009371c9d4SSatish Balay } MatCompositeType; 501014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType); 5026dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *); 5033b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure); 5043b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *); 5056d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *); 5068b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *); 50703049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *); 5086d7c1e57SBarry Smith 50919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *); 510014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *); 511dedccee8SHong Zhang 512014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *); 5138060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *); 514d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *); 51506511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *); 516fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *); 51765f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *); 51854e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *); 51954e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS); 520014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *); 5213423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *); 522345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatCreateDiagonal(Vec, Mat *); 523345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetDiagonal(Mat, Vec *); 524345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreDiagonal(Mat, Vec *); 525345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetInverseDiagonal(Mat, Vec *); 526345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreInverseDiagonal(Mat, Vec *); 5278a1df862SToby Isaac PETSC_EXTERN PetscErrorCode MatConstantDiagonalGetConstant(Mat, PetscScalar *); 5281472f72bSBarry Smith 529978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE) 530d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 531978814f1SStefano Zampini #endif 532978814f1SStefano Zampini 533014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]); 534ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]); 535cc4c1da9SBarry Smith PETSC_EXTERN PetscErrorCode MatPythonCreate(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const char[], Mat *); 5361d6018f0SLisandro Dalcin 537846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat); 538674b392bSAlexander PETSC_EXTERN PetscErrorCode MatResetHash(Mat); 539014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat); 540014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *); 541e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *); 54221c89e3eSBarry Smith 543014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat); 544014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat); 545014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat); 546014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *); 547014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *); 548713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **); 5490da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *); 550479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat); 5518a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *); 55220c04d79SPierre Jolivet PETSC_EXTERN PetscErrorCode MatComputeVariableBlockEnvelope(Mat); 55399cafbc1SBarry Smith 554014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 5558a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode); 556014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 557014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]); 558014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]); 559014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]); 56073a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom); 56184cb2905SBarry Smith 5622ef4de8bSBarry Smith /*S 5632ef1f0ffSBarry Smith MatStencil - Data structure (C struct) for storing information about rows and 5642ef1f0ffSBarry Smith columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()` 56562ef0227SBarry Smith 5662ef1f0ffSBarry Smith Level: beginner 5672ef1f0ffSBarry Smith 5682ef1f0ffSBarry Smith Notes: 56962ef0227SBarry Smith The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored). 57015229ffcSPierre Jolivet The c represents the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored. 57162ef0227SBarry Smith 572ce78bad3SBarry Smith For stencil access to vectors see `DMDAVecGetArray()` 573be479b30SJed Brown 5742ef1f0ffSBarry Smith For staggered grids, see `DMStagStencil` 5752ef4de8bSBarry Smith 576ce78bad3SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()` 5772ef1f0ffSBarry Smith `DMStagStencil` 5782ef4de8bSBarry Smith S*/ 579435da068SBarry Smith typedef struct { 580c1ac3661SBarry Smith PetscInt k, j, i, c; 581435da068SBarry Smith } MatStencil; 5822ef4de8bSBarry Smith 583014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 584014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 585014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt); 586435da068SBarry Smith 587d91e6319SBarry Smith /*E 5882ef1f0ffSBarry Smith MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use 589d91e6319SBarry Smith 5902ef1f0ffSBarry Smith Values: 5912ef1f0ffSBarry Smith + `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix 5922ef1f0ffSBarry Smith - `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted 5932ef1f0ffSBarry Smith 59416a05f60SBarry Smith Level: beginner 59516a05f60SBarry Smith 5961cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()` 597d91e6319SBarry Smith E*/ 5989371c9d4SSatish Balay typedef enum { 5999371c9d4SSatish Balay MAT_FLUSH_ASSEMBLY = 1, 6009371c9d4SSatish Balay MAT_FINAL_ASSEMBLY = 0 6019371c9d4SSatish Balay } MatAssemblyType; 6024f58015eSStefano Zampini 603014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType); 604014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType); 605014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *); 6064f9c727eSBarry Smith 607d91e6319SBarry Smith /*E 6082ef1f0ffSBarry Smith MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage 609d91e6319SBarry Smith 610d91e6319SBarry Smith Level: beginner 611d91e6319SBarry Smith 6122ef1f0ffSBarry Smith Note: 6132ef1f0ffSBarry Smith See `MatSetOption()` for the use of the options 6142ef1f0ffSBarry Smith 6152ef1f0ffSBarry Smith Developer Note: 61695452b02SPatrick Sanan Entries that are negative need not be called collectively by all processes. 617382164b0SBarry Smith 6181cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetOption()` 619d91e6319SBarry Smith E*/ 6209371c9d4SSatish Balay typedef enum { 6219371c9d4SSatish Balay MAT_OPTION_MIN = -3, 622c5e4d11fSDmitry Karpeev MAT_UNUSED_NONZERO_LOCATION_ERR = -2, 62392d4d306SBarry Smith MAT_ROW_ORIENTED = -1, 624382164b0SBarry Smith MAT_SYMMETRIC = 1, 625382164b0SBarry Smith MAT_STRUCTURALLY_SYMMETRIC = 2, 6268c78258cSHong Zhang MAT_FORCE_DIAGONAL_ENTRIES = 3, 627382164b0SBarry Smith MAT_IGNORE_OFF_PROC_ENTRIES = 4, 628382164b0SBarry Smith MAT_USE_HASH_TABLE = 5, 629382164b0SBarry Smith MAT_KEEP_NONZERO_PATTERN = 6, 630382164b0SBarry Smith MAT_IGNORE_ZERO_ENTRIES = 7, 631382164b0SBarry Smith MAT_USE_INODES = 8, 632382164b0SBarry Smith MAT_HERMITIAN = 9, 633382164b0SBarry Smith MAT_SYMMETRY_ETERNAL = 10, 634c5e4d11fSDmitry Karpeev MAT_NEW_NONZERO_LOCATION_ERR = 11, 635382164b0SBarry Smith MAT_IGNORE_LOWER_TRIANGULAR = 12, 636382164b0SBarry Smith MAT_ERROR_LOWER_TRIANGULAR = 13, 637382164b0SBarry Smith MAT_GETROW_UPPERTRIANGULAR = 14, 638382164b0SBarry Smith MAT_SPD = 15, 63992d4d306SBarry Smith MAT_NO_OFF_PROC_ZERO_ROWS = 16, 64092d4d306SBarry Smith MAT_NO_OFF_PROC_ENTRIES = 17, 64192d4d306SBarry Smith MAT_NEW_NONZERO_LOCATIONS = 18, 642c5e4d11fSDmitry Karpeev MAT_NEW_NONZERO_ALLOCATION_ERR = 19, 643c5e4d11fSDmitry Karpeev MAT_SUBSET_OFF_PROC_ENTRIES = 20, 644c10200c1SHong Zhang MAT_SUBMAT_SINGLEIS = 21, 645957cac9fSHong Zhang MAT_STRUCTURE_ONLY = 22, 646071fcb05SBarry Smith MAT_SORTED_FULL = 23, 6471a2c6b5cSJunchao Zhang MAT_FORM_EXPLICIT_TRANSPOSE = 24, 648b94d7dedSBarry Smith MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25, 649b94d7dedSBarry Smith MAT_SPD_ETERNAL = 26, 6509371c9d4SSatish Balay MAT_OPTION_MAX = 27 6519371c9d4SSatish Balay } MatOption; 652e057df02SPaul Mullowney 6530f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions; 654014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOption(Mat, MatOption, PetscBool); 6557d68702bSBarry Smith PETSC_EXTERN PetscErrorCode MatGetOption(Mat, MatOption, PetscBool *); 656856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode MatPropagateSymmetryOptions(Mat, Mat); 65719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetType(Mat, MatType *); 65884cb2905SBarry Smith 659014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 660014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 661014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 662014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowUpperTriangular(Mat); 663014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowUpperTriangular(Mat); 664014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnVector(Mat, Vec, PetscInt); 6658c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetArray(Mat, PetscScalar *[]); 6668f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]); 667d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]); 6688c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArray(Mat, PetscScalar *[]); 6698f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]); 670d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]); 67121e72a00SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *); 672bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 6734099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetType(Mat, MatType); 674ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatSeqAIJKron(Mat, Mat, MatReuse, Mat *); 675388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *)); 6764099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList; 677cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJGetArray(Mat, PetscScalar *[]); 678cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJRestoreArray(Mat, PetscScalar *[]); 6798397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJGetArray(Mat, PetscScalar *[]); 6808397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]); 6818c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArray(Mat, PetscScalar *[]); 6828c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArray(Mat, PetscScalar *[]); 683d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDensePlaceArray(Mat, const PetscScalar[]); 684d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseReplaceArray(Mat, const PetscScalar[]); 685d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseResetArray(Mat); 6868572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArrayRead(Mat, const PetscScalar *[]); 6878572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayRead(Mat, const PetscScalar *[]); 6886947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetArrayWrite(Mat, PetscScalar *[]); 6896947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWrite(Mat, PetscScalar *[]); 690cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *); 691cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]); 692cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *); 693cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]); 694cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *); 695cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]); 696014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSize(Mat, PetscInt *); 697014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSize(Mat, PetscInt); 698014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSizes(Mat, PetscInt *, PetscInt *); 699014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizes(Mat, PetscInt, PetscInt); 70033d57670SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizesFromMats(Mat, Mat, Mat); 7016e25ca73SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVariableBlockSizes(Mat, PetscInt, const PetscInt[]); 7026e25ca73SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt *[]); 7030da83c2eSBarry Smith 70486aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]); 70586aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]); 7066947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *); 7076947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *); 7086947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *); 7096947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *); 7106947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *); 7116947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *); 712a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 7135ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *); 7141620fd73SBarry Smith 715014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec); 716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec); 717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec); 718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec); 719014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec); 720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *); 721014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *); 722014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec); 723014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec); 724014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat); 725bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat); 726eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat); 727f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec); 728f5edf698SHong Zhang 729d91e6319SBarry Smith /*E 730d91e6319SBarry Smith MatDuplicateOption - Indicates if a duplicated sparse matrix should have 731d91e6319SBarry Smith its numerical values copied over or just its nonzero structure. 732d91e6319SBarry Smith 7332ef1f0ffSBarry Smith Values: 7342ef1f0ffSBarry Smith + `MAT_DO_NOT_COPY_VALUES` - Create a matrix using the same nonzero pattern as the original matrix, 7352ef1f0ffSBarry Smith with zeros for the numerical values 7362ef1f0ffSBarry Smith . `MAT_COPY_VALUES` - Create a matrix with the same nonzero pattern as the original matrix 7372ef1f0ffSBarry Smith and with the same numerical values. 7382ef1f0ffSBarry Smith - `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix 7392ef1f0ffSBarry Smith and does not copy it, using zeros for the numerical values. The parent and 7402ef1f0ffSBarry Smith child matrices will share their index (i and j) arrays, and you cannot 7412ef1f0ffSBarry Smith insert new nonzero entries into either matrix 7420018da39SRichard Tran Mills 74316a05f60SBarry Smith Level: beginner 74416a05f60SBarry Smith 74587497f52SBarry Smith Note: 74687497f52SBarry Smith Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in 74787497f52SBarry Smith this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified. 74870dcbbb9SBarry Smith 7491cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicate()` 750d91e6319SBarry Smith E*/ 7519371c9d4SSatish Balay typedef enum { 7529371c9d4SSatish Balay MAT_DO_NOT_COPY_VALUES, 7539371c9d4SSatish Balay MAT_COPY_VALUES, 7549371c9d4SSatish Balay MAT_SHARE_NONZERO_PATTERN 7559371c9d4SSatish Balay } MatDuplicateOption; 7562e8a6d31SBarry Smith 75719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *); 758014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *); 75994a9d846SBarry Smith 760014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure); 761014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer); 762014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *); 763014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *); 764014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *); 765014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *); 766014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *); 767b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *); 768b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *); 769014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *); 770014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer); 7717b80b807SBarry Smith 7721a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7731a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7741a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7751a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 776d4fbbf0eSBarry Smith 777d91e6319SBarry Smith /*S 77887497f52SBarry Smith MatInfo - Context of matrix information, used with `MatGetInfo()` 779d91e6319SBarry Smith 780d91e6319SBarry Smith Level: intermediate 781d91e6319SBarry Smith 7822ef1f0ffSBarry Smith Fortran Note: 783687234bfSJose E. Roman `MatInfo` is a derived type, use e.g. `matinfo%nz_allocated` to access its components. 7842ef1f0ffSBarry Smith 7851cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetInfo()`, `MatInfoType` 786d91e6319SBarry Smith S*/ 7874e220ebcSLois Curfman McInnes typedef struct { 788b0a32e0cSBarry Smith PetscLogDouble block_size; /* block size */ 789b0a32e0cSBarry Smith PetscLogDouble nz_allocated, nz_used, nz_unneeded; /* number of nonzeros */ 790b0a32e0cSBarry Smith PetscLogDouble memory; /* memory allocated */ 791b0a32e0cSBarry Smith PetscLogDouble assemblies; /* number of matrix assemblies called */ 792b0a32e0cSBarry Smith PetscLogDouble mallocs; /* number of mallocs during MatSetValues() */ 793b0a32e0cSBarry Smith PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */ 794b0a32e0cSBarry Smith PetscLogDouble factor_mallocs; /* number of mallocs during factorization */ 7954e220ebcSLois Curfman McInnes } MatInfo; 7964e220ebcSLois Curfman McInnes 797d9274352SBarry Smith /*E 798d9274352SBarry Smith MatInfoType - Indicates if you want information about the local part of the matrix, 799d9274352SBarry Smith the entire parallel matrix or the maximum over all the local parts. 800d9274352SBarry Smith 8012ef1f0ffSBarry Smith Values: 8022ef1f0ffSBarry Smith + `MAT_LOCAL` - values for each MPI process part of the matrix 8032ef1f0ffSBarry Smith . `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes 8042ef1f0ffSBarry Smith - `MAT_GLOBAL_SUM` - sum of each value over all MPI processes 805d9274352SBarry Smith 80616a05f60SBarry Smith Level: beginner 80716a05f60SBarry Smith 8081cc06b55SBarry Smith .seealso: [](ch_matrices), `MatGetInfo()`, `MatInfo` 809d9274352SBarry Smith E*/ 8109371c9d4SSatish Balay typedef enum { 8119371c9d4SSatish Balay MAT_LOCAL = 1, 8129371c9d4SSatish Balay MAT_GLOBAL_MAX = 2, 8139371c9d4SSatish Balay MAT_GLOBAL_SUM = 3 8149371c9d4SSatish Balay } MatInfoType; 815014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *); 816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec); 817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]); 818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]); 819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]); 820eede4a3fSMark Adams PETSC_EXTERN PetscErrorCode MatGetRowSumAbs(Mat, Vec); 821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]); 822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec); 823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *); 8247fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *); 8257fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat); 826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *); 827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *); 828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec); 829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode); 830a52676ecSHong Zhang 831014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *); 832014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *); 833014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *); 834014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 835014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 836e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 837e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 838a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 839a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 840cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 8414222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 842447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 84386919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *); 8447b80b807SBarry Smith 845014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *); 846014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *); 847857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *); 848857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *); 849857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *); 850857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *); 851857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *); 852857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *); 853857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *); 854014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat); 8551b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat); 856014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 857014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec); 858014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 859014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 860014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 861014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec); 8627b80b807SBarry Smith 863014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *); 864014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *); 865014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *); 866014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **); 867014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *); 868014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **); 869566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *); 8705ef9f2a5SBarry Smith 8717dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 872edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrices()", ) static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 873d71ae5a4SJacob Faibussowitsch { 8749371c9d4SSatish Balay return MatCreateSubMatrices(mat, n, irow, icol, scall, submat); 8759371c9d4SSatish Balay } 8767dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 877edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatricesMPI()", ) static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 878d71ae5a4SJacob Faibussowitsch { 8799371c9d4SSatish Balay return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat); 8809371c9d4SSatish Balay } 881014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]); 882df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]); 8837dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *); 884edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrix()", ) static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat) 885d71ae5a4SJacob Faibussowitsch { 8869371c9d4SSatish Balay return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat); 8879371c9d4SSatish Balay } 888014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *); 889014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *); 890014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *); 891014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *); 8927b80b807SBarry Smith 893014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *); 894014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *); 895014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat); 896014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *); 8978a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *); 898014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *); 899ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *); 900f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *); 901014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *); 902014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]); 9038efafbd8SBarry Smith 904014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt); 905ce78bad3SBarry Smith PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat, PetscInt, IS[], PetscInt); 906d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool); 9077b80b807SBarry Smith 908014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 90922440eb1SKris Buschelman 9107bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 9112df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 9127bab7c10SHong Zhang 913014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *); 914014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *); 91522440eb1SKris Buschelman 916014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 917014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *); 918bc011b1eSHong Zhang 919014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure); 920014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure); 9211c741599SHong Zhang 922014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar); 923014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar); 9247b80b807SBarry Smith 925014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping); 926014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 927a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *); 92881fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout); 929014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 930014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 931014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 932014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 933e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 934014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 935014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 936052efed2SBarry Smith 937014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt); 938014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *); 93990f02eecSBarry Smith 940014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec); 941014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec); 942014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec); 94330b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *); 94430b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *); 94530b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *); 9462a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *); 947edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 6, 0, "MatCreateVecs()", ) static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y) 948d71ae5a4SJacob Faibussowitsch { 9499371c9d4SSatish Balay return MatCreateVecs(mat, x, y); 9509371c9d4SSatish Balay } 95153cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *); 952014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *); 953014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *); 9543a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *); 9559c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *); 956bd481603SBarry Smith 957fe1fc275SAlexander PETSC_EXTERN PetscErrorCode MatCopyHashToXAIJ(Mat A, Mat B); 958c8d6c325SJunchao Zhang /*@C 9591620fd73SBarry Smith MatSetValue - Set a single entry into a matrix. 9601620fd73SBarry Smith 961e1c5b2e2SJose E. Roman Not Collective 962a9834a7dSSatish Balay 9631620fd73SBarry Smith Input Parameters: 964c8d6c325SJunchao Zhang + mat - the matrix 96516a05f60SBarry Smith . i - the row location of the entry 96616a05f60SBarry Smith . j - the column location of the entry 96716a05f60SBarry Smith . va - the value to insert 96887497f52SBarry Smith - mode - either `INSERT_VALUES` or `ADD_VALUES` 9691620fd73SBarry Smith 9701620fd73SBarry Smith Level: beginner 9711620fd73SBarry Smith 97295bd0b28SBarry Smith Notes: 97395bd0b28SBarry Smith This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()` 97495bd0b28SBarry Smith MUST be called after all calls to `MatSetValue()` have been completed. 97595bd0b28SBarry Smith 9762ef1f0ffSBarry Smith For efficiency one should use `MatSetValues()` and set several values simultaneously. 9772ef1f0ffSBarry Smith 978b43fc34aSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `InsertMode`, `MatGetValue()`, `MatSetValues()`, 9792ef1f0ffSBarry Smith `MatSetValueLocal()`, `MatSetValuesLocal()` 980c8d6c325SJunchao Zhang @*/ 981c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValue(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 982d71ae5a4SJacob Faibussowitsch { 983c8d6c325SJunchao Zhang return MatSetValues(mat, 1, &i, 1, &j, &va, mode); 9849371c9d4SSatish Balay } 9851620fd73SBarry Smith 986e5e5a7b5SPatrick Sanan /*@C 987e5e5a7b5SPatrick Sanan MatGetValue - Gets a single value from a matrix 9881620fd73SBarry Smith 989e5e5a7b5SPatrick Sanan Not Collective; can only return a value owned by the given process 990e5e5a7b5SPatrick Sanan 991e5e5a7b5SPatrick Sanan Input Parameters: 992e5e5a7b5SPatrick Sanan + mat - the matrix 993e5e5a7b5SPatrick Sanan . row - the row location of the entry 994e5e5a7b5SPatrick Sanan - col - the column location of the entry 995e5e5a7b5SPatrick Sanan 996e5e5a7b5SPatrick Sanan Output Parameter: 997e5e5a7b5SPatrick Sanan . va - the value 998e5e5a7b5SPatrick Sanan 9992ef1f0ffSBarry Smith Level: advanced 10002ef1f0ffSBarry Smith 1001e5e5a7b5SPatrick Sanan Notes: 1002b43fc34aSPierre Jolivet The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd()` before this call 10032ef1f0ffSBarry Smith 100487497f52SBarry Smith For efficiency one should use `MatGetValues()` and get several values simultaneously. 1005e5e5a7b5SPatrick Sanan 100687497f52SBarry Smith See notes for `MatGetValues()`. 1007e5e5a7b5SPatrick Sanan 1008bfe80ac4SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValue()`, `MatGetValuesLocal()`, `MatGetValues()` 1009e5e5a7b5SPatrick Sanan @*/ 1010d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va) 1011d71ae5a4SJacob Faibussowitsch { 10129371c9d4SSatish Balay return MatGetValues(mat, 1, &row, 1, &col, va); 10139371c9d4SSatish Balay } 1014e5e5a7b5SPatrick Sanan 1015c8d6c325SJunchao Zhang /*@C 10162ef1f0ffSBarry Smith MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes. 1017e5e5a7b5SPatrick Sanan 1018e5e5a7b5SPatrick Sanan Not Collective 1019e5e5a7b5SPatrick Sanan 1020e5e5a7b5SPatrick Sanan Input Parameters: 1021c8d6c325SJunchao Zhang + mat - the matrix 102216a05f60SBarry Smith . i - the row location of the entry 102316a05f60SBarry Smith . j - the column location of the entry 102416a05f60SBarry Smith . va - the value to insert 102587497f52SBarry Smith - mode - either `INSERT_VALUES` or `ADD_VALUES` 1026e5e5a7b5SPatrick Sanan 10272ef1f0ffSBarry Smith Level: intermediate 10282ef1f0ffSBarry Smith 1029e5e5a7b5SPatrick Sanan Notes: 103087497f52SBarry Smith For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously. 1031e5e5a7b5SPatrick Sanan 103287497f52SBarry Smith See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used. 1033e5e5a7b5SPatrick Sanan 10341cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSetValue()`, `MatSetValuesLocal()` 1035c8d6c325SJunchao Zhang @*/ 1036c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValueLocal(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 1037d71ae5a4SJacob Faibussowitsch { 1038c8d6c325SJunchao Zhang return MatSetValuesLocal(mat, 1, &i, 1, &j, &va, mode); 10399371c9d4SSatish Balay } 10401620fd73SBarry Smith 10411620fd73SBarry Smith /*MC 1042d0609cedSBarry Smith MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per 1043bd481603SBarry Smith row in a matrix providing the data that one can use to correctly preallocate the matrix. 1044bd481603SBarry Smith 1045bd481603SBarry Smith Synopsis: 1046aaa7dc30SBarry Smith #include <petscmat.h> 1047d0609cedSBarry Smith PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz) 1048bd481603SBarry Smith 1049d083f849SBarry Smith Collective 1050bd481603SBarry Smith 1051bd481603SBarry Smith Input Parameters: 1052bd481603SBarry Smith + comm - the communicator that will share the eventually allocated matrix 1053859fcb39SBarry Smith . nrows - the number of LOCAL rows in the matrix 1054859fcb39SBarry Smith - ncols - the number of LOCAL columns in the matrix 1055bd481603SBarry Smith 1056bd481603SBarry Smith Output Parameters: 1057bd481603SBarry Smith + dnz - the array that will be passed to the matrix preallocation routines 1058a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1059bd481603SBarry Smith 10602ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1061bd481603SBarry Smith 1062bd481603SBarry Smith Notes: 10632ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 10642ef1f0ffSBarry Smith the use of this routine 10652ef1f0ffSBarry Smith 1066d0609cedSBarry Smith This is a macro that handles its own error checking, it does not return an error code. 1067d0609cedSBarry Smith 10682ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1069bd481603SBarry Smith 10702ef1f0ffSBarry Smith Developer Note: 1071af27ebaaSBarry Smith This is a MACRO, not a function, because it has a leading { that is closed by `PetscPreallocateFinalize()`. 1072bd481603SBarry Smith 10731cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1074db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 1075bd481603SBarry Smith M*/ 10769371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \ 10779371c9d4SSatish Balay do { \ 10783ba16761SJacob Faibussowitsch PetscInt __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \ 10793ba16761SJacob Faibussowitsch PetscInt PETSC_UNUSED __start; \ 10809566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \ 10819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \ 10829371c9d4SSatish Balay __start = __end - __ncols; \ 10839371c9d4SSatish Balay (void)__start; \ 10849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \ 10855f80ce2aSJacob Faibussowitsch __rstart -= __nrows 10867c922b88SBarry Smith 1087edd03b47SJacob Faibussowitsch #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateBegin()", ) MatPreallocateBegin(__VA_ARGS__) 1088d0609cedSBarry Smith 1089bd481603SBarry Smith /*MC 1090bd481603SBarry Smith MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1091bd481603SBarry Smith inserted using a local number of the rows and columns 1092bd481603SBarry Smith 1093bd481603SBarry Smith Synopsis: 1094aaa7dc30SBarry Smith #include <petscmat.h> 1095c1ac3661SBarry Smith PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1096bd481603SBarry Smith 1097bd481603SBarry Smith Not Collective 1098bd481603SBarry Smith 1099bd481603SBarry Smith Input Parameters: 1100784ac674SJed Brown + map - the row mapping from local numbering to global numbering 1101bd481603SBarry Smith . nrows - the number of rows indicated 11021d73ed98SBarry Smith . rows - the indices of the rows 1103784ac674SJed Brown . cmap - the column mapping from local to global numbering 1104bd481603SBarry Smith . ncols - the number of columns in the matrix 1105bd481603SBarry Smith . cols - the columns indicated 1106bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1107a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1108bd481603SBarry Smith 11092ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1110bd481603SBarry Smith 1111bd481603SBarry Smith Notes: 11122ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11132ef1f0ffSBarry Smith the use of this routine 1114bd481603SBarry Smith 11152ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1116bd481603SBarry Smith 11171cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1118db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()` 1119bd481603SBarry Smith M*/ 112094bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 11219371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1122c4f061fbSSatish Balay 1123bd481603SBarry Smith /*MC 1124c1154cd5SBarry Smith MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1125c1154cd5SBarry Smith inserted using a local number of the rows and columns. This version removes any duplicate columns in cols 1126c1154cd5SBarry Smith 1127c1154cd5SBarry Smith Synopsis: 1128c1154cd5SBarry Smith #include <petscmat.h> 1129c1154cd5SBarry Smith PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1130c1154cd5SBarry Smith 1131c1154cd5SBarry Smith Not Collective 1132c1154cd5SBarry Smith 1133c1154cd5SBarry Smith Input Parameters: 1134c1154cd5SBarry Smith + map - the row mapping from local numbering to global numbering 1135c1154cd5SBarry Smith . nrows - the number of rows indicated 1136c1154cd5SBarry Smith . rows - the indices of the rows (these values are mapped to the global values) 1137c1154cd5SBarry Smith . cmap - the column mapping from local to global numbering 1138c1154cd5SBarry Smith . ncols - the number of columns in the matrix (this value will be changed if duplicate columns are found) 1139c1154cd5SBarry Smith . cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed) 1140c1154cd5SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1141a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1142c1154cd5SBarry Smith 11432ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1144c1154cd5SBarry Smith 1145c1154cd5SBarry Smith Notes: 11462ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11472ef1f0ffSBarry Smith the use of this routine 1148c1154cd5SBarry Smith 11492ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1150c1154cd5SBarry Smith 11511cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1152db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1153c1154cd5SBarry Smith M*/ 115494bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 11559371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1156c1154cd5SBarry Smith 1157c1154cd5SBarry Smith /*MC 1158d6e23781SBarry Smith MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1159bd481603SBarry Smith inserted using a local number of the rows and columns 1160bd481603SBarry Smith 1161bd481603SBarry Smith Synopsis: 1162aaa7dc30SBarry Smith #include <petscmat.h> 1163d6e23781SBarry Smith PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1164d6e23781SBarry Smith 1165d6e23781SBarry Smith Not Collective 1166d6e23781SBarry Smith 1167d6e23781SBarry Smith Input Parameters: 1168d6e23781SBarry Smith + map - the row mapping from local numbering to global numbering 1169d6e23781SBarry Smith . nrows - the number of rows indicated 1170d6e23781SBarry Smith . rows - the indices of the rows 1171d6e23781SBarry Smith . cmap - the column mapping from local to global numbering 1172d6e23781SBarry Smith . ncols - the number of columns in the matrix 1173d6e23781SBarry Smith . cols - the columns indicated 1174d6e23781SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1175a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1176d6e23781SBarry Smith 11772ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1178d6e23781SBarry Smith 1179d6e23781SBarry Smith Notes: 11802ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11812ef1f0ffSBarry Smith the use of this routine 1182d6e23781SBarry Smith 11832ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1184d6e23781SBarry Smith 11851cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1186db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()` 1187d6e23781SBarry Smith M*/ 118894bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 11899371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1190d6e23781SBarry Smith 1191d6e23781SBarry Smith /*MC 1192d6e23781SBarry Smith MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1193d6e23781SBarry Smith inserted using a local number of the rows and columns 1194d6e23781SBarry Smith 1195d6e23781SBarry Smith Synopsis: 1196d6e23781SBarry Smith #include <petscmat.h> 1197d6e23781SBarry Smith PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1198bd481603SBarry Smith 1199bd481603SBarry Smith Not Collective 1200bd481603SBarry Smith 1201bd481603SBarry Smith Input Parameters: 1202bd481603SBarry Smith + map - the mapping between local numbering and global numbering 1203bd481603SBarry Smith . nrows - the number of rows indicated 12041d73ed98SBarry Smith . rows - the indices of the rows 1205bd481603SBarry Smith . ncols - the number of columns in the matrix 1206bd481603SBarry Smith . cols - the columns indicated 1207bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1208a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1209bd481603SBarry Smith 12102ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1211bd481603SBarry Smith 1212bd481603SBarry Smith Notes: 12132ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12142ef1f0ffSBarry Smith the use of this routine 1215bd481603SBarry Smith 12162ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1217bd481603SBarry Smith 12181cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()` 1219db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1220bd481603SBarry Smith M*/ 122194bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \ 12229371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));) 1223e83a5d19SLisandro Dalcin 1224bd481603SBarry Smith /*MC 1225bd481603SBarry Smith MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1226bd481603SBarry Smith inserted using a local number of the rows and columns 1227bd481603SBarry Smith 1228bd481603SBarry Smith Synopsis: 1229aaa7dc30SBarry Smith #include <petscmat.h> 1230c1ac3661SBarry Smith PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1231bd481603SBarry Smith 1232bd481603SBarry Smith Not Collective 1233bd481603SBarry Smith 1234bd481603SBarry Smith Input Parameters: 123564075487SBarry Smith + row - the row 1236bd481603SBarry Smith . ncols - the number of columns in the matrix 1237a50f8bf6SHong Zhang - cols - the columns indicated 1238a50f8bf6SHong Zhang 1239a50f8bf6SHong Zhang Output Parameters: 1240a50f8bf6SHong Zhang + dnz - the array that will be passed to the matrix preallocation routines 1241a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1242bd481603SBarry Smith 12432ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1244bd481603SBarry Smith 1245bd481603SBarry Smith Notes: 12462ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12472ef1f0ffSBarry Smith the use of this routine 1248bd481603SBarry Smith 12492ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1250bd481603SBarry Smith 1251af27ebaaSBarry Smith This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin(). 12521620fd73SBarry Smith 12531cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1254db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1255bd481603SBarry Smith M*/ 12569371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \ 12579371c9d4SSatish Balay PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \ 125864075487SBarry Smith if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \ 1259a6042fd4SStefano Zampini else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 12609371c9d4SSatish Balay }) 12617c922b88SBarry Smith 1262bd481603SBarry Smith /*MC 1263d6e23781SBarry Smith MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1264bd481603SBarry Smith inserted using a local number of the rows and columns 1265bd481603SBarry Smith 1266bd481603SBarry Smith Synopsis: 1267aaa7dc30SBarry Smith #include <petscmat.h> 1268d6e23781SBarry Smith PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1269bd481603SBarry Smith 1270bd481603SBarry Smith Not Collective 1271bd481603SBarry Smith 1272bd481603SBarry Smith Input Parameters: 1273bd481603SBarry Smith + nrows - the number of rows indicated 12741d73ed98SBarry Smith . rows - the indices of the rows 1275bd481603SBarry Smith . ncols - the number of columns in the matrix 1276bd481603SBarry Smith . cols - the columns indicated 1277bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1278a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1279bd481603SBarry Smith 12802ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1281bd481603SBarry Smith 1282bd481603SBarry Smith Notes: 12832ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12842ef1f0ffSBarry Smith the use of this routine 1285bd481603SBarry Smith 12862ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1287bd481603SBarry Smith 1288af27ebaaSBarry Smith This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin(). 12891620fd73SBarry Smith 12901cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`, 1291db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1292bd481603SBarry Smith M*/ 129394bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \ 12949371c9d4SSatish Balay PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \ 1295d3d32019SBarry Smith if (cols[__i] >= __end) onz[row - __rstart]++; \ 1296a6042fd4SStefano Zampini else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 12979371c9d4SSatish Balay }) 1298d3d32019SBarry Smith 1299bd481603SBarry Smith /*MC 1300a6042fd4SStefano Zampini MatPreallocateLocation - An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists 130116371a99SBarry Smith 130216371a99SBarry Smith Synopsis: 1303aaa7dc30SBarry Smith #include <petscmat.h> 130416371a99SBarry Smith PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz) 130516371a99SBarry Smith 130616371a99SBarry Smith Not Collective 130716371a99SBarry Smith 130816371a99SBarry Smith Input Parameters: 1309a2b725a8SWilliam Gropp + A - matrix 131016371a99SBarry Smith . row - row where values exist (must be local to this process) 131116371a99SBarry Smith . ncols - number of columns 131216371a99SBarry Smith . cols - columns with nonzeros 131316371a99SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1314a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 131516371a99SBarry Smith 13162ef1f0ffSBarry Smith Level: deprecated (since v3.19) 131716371a99SBarry Smith 131816371a99SBarry Smith Notes: 13192ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 13202ef1f0ffSBarry Smith the use of this routine 132116371a99SBarry Smith 13222ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 132316371a99SBarry Smith 1324af27ebaaSBarry Smith Developer Note: 1325af27ebaaSBarry Smith This is a MACRO, not a function, because it uses a bunch of variables private to the MatPreallocation.... routines. 132616371a99SBarry Smith 13271cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1328db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 132916371a99SBarry Smith M*/ 1330d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz)) 133116371a99SBarry Smith 133216371a99SBarry Smith /*MC 1333d0609cedSBarry Smith MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per 1334bd481603SBarry Smith row in a matrix providing the data that one can use to correctly preallocate the matrix. 1335bd481603SBarry Smith 1336bd481603SBarry Smith Synopsis: 1337aaa7dc30SBarry Smith #include <petscmat.h> 1338d0609cedSBarry Smith PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz) 1339bd481603SBarry Smith 1340d083f849SBarry Smith Collective 1341bd481603SBarry Smith 1342bd481603SBarry Smith Input Parameters: 134316371a99SBarry Smith + dnz - the array that was be passed to the matrix preallocation routines 1344a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1345bd481603SBarry Smith 13462ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1347bd481603SBarry Smith 1348bd481603SBarry Smith Notes: 13492ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 13502ef1f0ffSBarry Smith the use of this routine 1351d0609cedSBarry Smith 13522ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1353bd481603SBarry Smith 13542ef1f0ffSBarry Smith Developer Note: 1355af27ebaaSBarry Smith This is a MACRO, not a function, because it closes the { started in MatPreallocateBegin(). 13561620fd73SBarry Smith 13571cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1358db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 1359bd481603SBarry Smith M*/ 13609371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \ 13619371c9d4SSatish Balay PetscCall(PetscFree2(dnz, onz)); \ 13629371c9d4SSatish Balay } \ 13639371c9d4SSatish Balay while (0) 1364d0609cedSBarry Smith 1365edd03b47SJacob Faibussowitsch #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateEnd()", ) MatPreallocateEnd(__VA_ARGS__) 13667c922b88SBarry Smith 13677b80b807SBarry Smith /* Routines unique to particular data structures */ 1368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *); 1369698d4c6aSKris Buschelman 1370014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *); 1371014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *); 1372698d4c6aSKris Buschelman 1373014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]); 1374014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]); 1375014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1376014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1377014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1378ce78bad3SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscCount, PetscBool); 13797b80b807SBarry Smith 1380a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4 1381a96a251dSBarry Smith 1382014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1383014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1384014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]); 138519b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt); 1386273d9f13SBarry Smith 1387014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1388014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1389014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1390014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1391014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1392014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1393014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1394014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]); 1395b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *); 1396252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *); 1397014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]); 1398014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]); 13999230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 14009230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 1401014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *); 1402273d9f13SBarry Smith 140349a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *); 1404ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt); 1405edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatDenseSetLDA()", ) static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda) 1406d71ae5a4SJacob Faibussowitsch { 14079371c9d4SSatish Balay return MatDenseSetLDA(A, lda); 14089371c9d4SSatish Balay } 1409014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *); 14101b807ce4Svictorle 1411621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1412621e819fSSatish Balay 1413014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat); 1414014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat); 14152e8a6d31SBarry Smith 1416014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *); 14177cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *); 14187b80b807SBarry Smith /* 14197b80b807SBarry Smith These routines are not usually accessed directly, rather solving is 142094b7f48cSBarry Smith done through the KSP and PC interfaces. 14217b80b807SBarry Smith */ 14227b80b807SBarry Smith 142376bdecfbSBarry Smith /*J 14242ef1f0ffSBarry Smith MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used 14252ef1f0ffSBarry Smith to reduce fill in sparse factorizations. 1426d9274352SBarry Smith 1427d9274352SBarry Smith Level: beginner 1428d9274352SBarry Smith 14292c7c0729SBarry Smith Notes: 143016a05f60SBarry Smith If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one 143116a05f60SBarry Smith of its own. 14322c7c0729SBarry Smith 14332ef1f0ffSBarry Smith There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()` 14342ef1f0ffSBarry Smith 14352ef1f0ffSBarry Smith Developer Note: 14362ef1f0ffSBarry Smith This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning` 14372ef1f0ffSBarry Smith 14381cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`, 14392ef1f0ffSBarry Smith `PCFactorSetOrderingType()` 144076bdecfbSBarry Smith J*/ 144119fd82e9SBarry Smith typedef const char *MatOrderingType; 14422692d6eeSBarry Smith #define MATORDERINGNATURAL "natural" 14432692d6eeSBarry Smith #define MATORDERINGND "nd" 14442692d6eeSBarry Smith #define MATORDERING1WD "1wd" 14452692d6eeSBarry Smith #define MATORDERINGRCM "rcm" 14462692d6eeSBarry Smith #define MATORDERINGQMD "qmd" 14472692d6eeSBarry Smith #define MATORDERINGROWLENGTH "rowlength" 1448510184a7SJed Brown #define MATORDERINGWBM "wbm" 1449fc1bef75SJed Brown #define MATORDERINGSPECTRAL "spectral" 1450312e372aSBarry Smith #define MATORDERINGAMD "amd" /* only works if UMFPACK is installed with PETSc */ 1451048412efSPablo Brubeck #define MATORDERINGMETISND "metisnd" /* only works if METIS is installed with PETSc */ 14529bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */ 14532c7c0729SBarry Smith #define MATORDERINGEXTERNAL "external" /* uses an ordering type internal to the factorization package */ 1454b12f92e5SBarry Smith 145519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrdering(Mat, MatOrderingType, IS *, IS *); 1456140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrderingList(PetscFunctionList *); 1457bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *)); 1458140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList; 1459d4fbbf0eSBarry Smith 1460013e2dc7SBarry Smith #include "petscmatcoarsen.h" 1461013e2dc7SBarry Smith 1462014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS); 1463fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *); 1464a2ce50c7SBarry Smith 14654ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *); 14664ac6704cSBarry Smith 1467d91e6319SBarry Smith /*S 14682ef1f0ffSBarry Smith MatFactorShiftType - Type of numeric shift used for factorizations 1469d90ac83dSHong Zhang 14702ef1f0ffSBarry Smith Values: 14712ef1f0ffSBarry Smith + `MAT_SHIFT_NONE` - do not shift the matrix diagonal entries 14722ef1f0ffSBarry Smith . `MAT_SHIFT_NONZERO` - shift the entries to be non-zero 14732ef1f0ffSBarry Smith . `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite 14742ef1f0ffSBarry Smith - `MAT_SHIFT_INBLOCKS` - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ` 1475d90ac83dSHong Zhang 14762ef1f0ffSBarry Smith Level: intermediate 14772ef1f0ffSBarry Smith 14781cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()` 1479d90ac83dSHong Zhang S*/ 14809371c9d4SSatish Balay typedef enum { 14819371c9d4SSatish Balay MAT_SHIFT_NONE, 14829371c9d4SSatish Balay MAT_SHIFT_NONZERO, 14839371c9d4SSatish Balay MAT_SHIFT_POSITIVE_DEFINITE, 14849371c9d4SSatish Balay MAT_SHIFT_INBLOCKS 14859371c9d4SSatish Balay } MatFactorShiftType; 14866a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[]; 14875e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[]; 1488d90ac83dSHong Zhang 1489d90ac83dSHong Zhang /*S 1490ec5066bdSBarry Smith MatFactorError - indicates what type of error was generated in a matrix factorization 14919aa7eafdSHong Zhang 14922ef1f0ffSBarry Smith Values: 14932ef1f0ffSBarry Smith + `MAT_FACTOR_NOERROR` - there was no error during the factorization 14942ef1f0ffSBarry Smith . `MAT_FACTOR_STRUCT_ZEROPIVOT` - there was a missing entry in a diagonal location of the matrix 14952ef1f0ffSBarry Smith . `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization 14962ef1f0ffSBarry Smith . `MAT_FACTOR_OUTMEMORY` - the factorization has run out of memory 14972ef1f0ffSBarry Smith - `MAT_FACTOR_OTHER` - some other error has occurred. 14989aa7eafdSHong Zhang 14992ef1f0ffSBarry Smith Level: intermediate 150000e125f8SBarry Smith 15012ef1f0ffSBarry Smith Note: 15022ef1f0ffSBarry Smith When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason` 15032ef1f0ffSBarry Smith 15041cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`, 15052ef1f0ffSBarry Smith `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason` 15069aa7eafdSHong Zhang S*/ 15079371c9d4SSatish Balay typedef enum { 15089371c9d4SSatish Balay MAT_FACTOR_NOERROR, 15099371c9d4SSatish Balay MAT_FACTOR_STRUCT_ZEROPIVOT, 15109371c9d4SSatish Balay MAT_FACTOR_NUMERIC_ZEROPIVOT, 15119371c9d4SSatish Balay MAT_FACTOR_OUTMEMORY, 15129371c9d4SSatish Balay MAT_FACTOR_OTHER 15139371c9d4SSatish Balay } MatFactorError; 15149aa7eafdSHong Zhang 151500e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *); 1516b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat); 15177b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *); 151800e125f8SBarry Smith 15199aa7eafdSHong Zhang /*S 1520422a814eSBarry Smith MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization 1521b00f7748SHong Zhang 1522b00f7748SHong Zhang Level: developer 1523b00f7748SHong Zhang 15242ef1f0ffSBarry Smith Note: 15252ef1f0ffSBarry Smith You can use `MatFactorInfoInitialize()` to set default values. 1526b00f7748SHong Zhang 15272ef1f0ffSBarry Smith Fortran Note: 1528687234bfSJose E. Roman `MatFactorInfo` is a derived type, use e.g. `matfactorinfo%dt` to access its components. 15292ef1f0ffSBarry Smith 15301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, 15312ef1f0ffSBarry Smith `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()` 1532b00f7748SHong Zhang S*/ 1533b00f7748SHong Zhang typedef struct { 153415e8a5b3SHong Zhang PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */ 153585317021SBarry Smith PetscReal usedt; 153615e8a5b3SHong Zhang PetscReal dt; /* drop tolerance */ 1537b00f7748SHong Zhang PetscReal dtcol; /* tolerance for pivoting */ 153815e8a5b3SHong Zhang PetscReal dtcount; /* maximum nonzeros to be allowed per row */ 153967e28bfeSBarry Smith PetscReal fill; /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */ 1540348344bbSBarry Smith PetscReal levels; /* ICC/ILU(levels) */ 1541ce78bad3SBarry Smith PetscReal pivotinblocks; /* BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 factorization may be faster if do not pivot */ 154215e8a5b3SHong Zhang PetscReal zeropivot; /* pivot is called zero if less than this */ 1543f4db908eSBarry Smith PetscReal shifttype; /* type of shift added to matrix factor to prevent zero pivots */ 1544f4db908eSBarry Smith PetscReal shiftamount; /* how large the shift is */ 1545f82ac72cSJunchao Zhang PetscBool factoronhost; /* do factorization on host instead of device (for device matrix types) */ 1546f82ac72cSJunchao Zhang PetscBool solveonhost; /* do mat solve on host with the factor (for device matrix types) */ 154715e8a5b3SHong Zhang } MatFactorInfo; 1548ffa6d0a5SLois Curfman McInnes 1549014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *); 15509a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *); 15519a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15529a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *); 15539a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *); 15549a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *); 15559a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 15569a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 15579a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15589a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *); 15599a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *); 15603f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *); 15613f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15623f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *); 1563014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *); 1564014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec); 1565014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec); 1566014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec); 1567014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec); 1568014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec); 1569014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec); 1570014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs); 15717c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat); 15727c2f51b8SStefano Zampini 15739371c9d4SSatish Balay typedef enum { 15749371c9d4SSatish Balay MAT_FACTOR_SCHUR_UNFACTORED, 15759371c9d4SSatish Balay MAT_FACTOR_SCHUR_FACTORED, 15769371c9d4SSatish Balay MAT_FACTOR_SCHUR_INVERTED 15779371c9d4SSatish Balay } MatFactorSchurStatus; 15788e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS); 15797c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 15807c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus); 15815a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat); 15827c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 15835a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec); 15845a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec); 15856dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat); 1586bb5a7306SBarry Smith 15878a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat); 1588d91e6319SBarry Smith /*E 1589d91e6319SBarry Smith MatSORType - What type of (S)SOR to perform 1590bb1eb677SSatish Balay 15912ef1f0ffSBarry Smith Values: 15922ef1f0ffSBarry Smith + `SOR_FORWARD_SWEEP` - do a sweep from the first row of the matrix to the last 15932ef1f0ffSBarry Smith . `SOR_BACKWARD_SWEEP` - do a sweep from the last row to the first 15942ef1f0ffSBarry Smith . `SOR_SYMMETRIC_SWEEP` - do a sweep from the first row to the last and then back to the first 1595af27ebaaSBarry Smith . `SOR_LOCAL_FORWARD_SWEEP` - each MPI process does its own forward sweep with no communication 1596af27ebaaSBarry Smith . `SOR_LOCAL_BACKWARD_SWEEP` - each MPI process does its own backward sweep with no communication 1597af27ebaaSBarry Smith . `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI process does its own symmetric sweep with no communication 15982ef1f0ffSBarry Smith . `SOR_ZERO_INITIAL_GUESS` - indicates the initial solution is zero so the sweep can avoid unneeded computation 15992ef1f0ffSBarry Smith . `SOR_EISENSTAT` - apply the Eisentat application of SOR, see `PCEISENSTAT` 16002ef1f0ffSBarry Smith . `SOR_APPLY_UPPER` - multiply by the upper triangular portion of the matrix 16012ef1f0ffSBarry Smith - `SOR_APPLY_LOWER` - multiply by the lower triangular portion of the matrix 16022ef1f0ffSBarry Smith 1603d91e6319SBarry Smith Level: beginner 1604d91e6319SBarry Smith 16052ef1f0ffSBarry Smith Note: 16062ef1f0ffSBarry Smith These may be bitwise ORd together 1607d9274352SBarry Smith 16082ef1f0ffSBarry Smith Developer Note: 16092ef1f0ffSBarry Smith Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below 1610d91e6319SBarry Smith 16111cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSOR()` 1612d91e6319SBarry Smith E*/ 16139371c9d4SSatish Balay typedef enum { 16149371c9d4SSatish Balay SOR_FORWARD_SWEEP = 1, 16159371c9d4SSatish Balay SOR_BACKWARD_SWEEP = 2, 16169371c9d4SSatish Balay SOR_SYMMETRIC_SWEEP = 3, 16179371c9d4SSatish Balay SOR_LOCAL_FORWARD_SWEEP = 4, 16189371c9d4SSatish Balay SOR_LOCAL_BACKWARD_SWEEP = 8, 16199371c9d4SSatish Balay SOR_LOCAL_SYMMETRIC_SWEEP = 12, 16209371c9d4SSatish Balay SOR_ZERO_INITIAL_GUESS = 16, 16219371c9d4SSatish Balay SOR_EISENSTAT = 32, 16229371c9d4SSatish Balay SOR_APPLY_UPPER = 64, 16239371c9d4SSatish Balay SOR_APPLY_LOWER = 128 16249371c9d4SSatish Balay } MatSORType; 1625014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec); 16268ed539a5SBarry Smith 16277086a01eSPeter Brune /*S 16287086a01eSPeter Brune MatColoring - Object for managing the coloring of matrices. 16297086a01eSPeter Brune 16307086a01eSPeter Brune Level: beginner 16317086a01eSPeter Brune 1632ec5066bdSBarry Smith Notes: 163387497f52SBarry Smith Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 163487497f52SBarry Smith matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors). 1635ec5066bdSBarry Smith 163687497f52SBarry Smith Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This 16372ef1f0ffSBarry Smith same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices. 1638ec5066bdSBarry Smith 16391cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`, 16402ef1f0ffSBarry Smith `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`, 16412ef1f0ffSBarry Smith `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen` 16427086a01eSPeter Brune S*/ 1643d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring; 1644d4db15c4SBarry Smith 1645d4db15c4SBarry Smith /*J 1646d4db15c4SBarry Smith MatColoringType - String with the name of a PETSc matrix coloring 1647d9274352SBarry Smith 1648d9274352SBarry Smith Level: beginner 1649d9274352SBarry Smith 16501cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring` 165176bdecfbSBarry Smith J*/ 165219fd82e9SBarry Smith typedef const char *MatColoringType; 16535567d71aSPeter Brune #define MATCOLORINGJP "jp" 1654b9acb617SPeter Brune #define MATCOLORINGPOWER "power" 16552692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural" 16562692d6eeSBarry Smith #define MATCOLORINGSL "sl" 16572692d6eeSBarry Smith #define MATCOLORINGLF "lf" 16582692d6eeSBarry Smith #define MATCOLORINGID "id" 16598121bdceSPeter Brune #define MATCOLORINGGREEDY "greedy" 1660b12f92e5SBarry Smith 16618ac6da0aSPeter Brune /*E 16622ef1f0ffSBarry Smith MatColoringWeightType - Type of weight scheme used for the coloring algorithm 16638ac6da0aSPeter Brune 16642ef1f0ffSBarry Smith Values: 166587497f52SBarry Smith + `MAT_COLORING_RANDOM` - Random weights 166687497f52SBarry Smith . `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering. 166787497f52SBarry Smith - `MAT_COLORING_LF` - Last-first weighting. 16688ac6da0aSPeter Brune 16698ac6da0aSPeter Brune Level: intermediate 16708ac6da0aSPeter Brune 16711cc06b55SBarry Smith .seealso: [](ch_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()` 16728ac6da0aSPeter Brune E*/ 16739371c9d4SSatish Balay typedef enum { 16749371c9d4SSatish Balay MAT_COLORING_WEIGHT_RANDOM, 16759371c9d4SSatish Balay MAT_COLORING_WEIGHT_LEXICAL, 16769371c9d4SSatish Balay MAT_COLORING_WEIGHT_LF, 16779371c9d4SSatish Balay MAT_COLORING_WEIGHT_SL 16789371c9d4SSatish Balay } MatColoringWeightType; 16798ac6da0aSPeter Brune 1680335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *); 1681d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *); 1682335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *); 1683335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer); 1684335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType); 1685335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring); 1686335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt); 1687335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *); 1688335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt); 1689335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *); 1690335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *); 1691335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring)); 1692014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *); 16938ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType); 1694c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *); 16958ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm); 1696bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring); 1697edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatColoringTest()", ) static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring) 1698d71ae5a4SJacob Faibussowitsch { 16999371c9d4SSatish Balay return MatColoringTest(matcoloring, iscoloring); 17009371c9d4SSatish Balay } 1701bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring); 1702639f9d9dSBarry Smith 1703d9274352SBarry Smith /*S 170487497f52SBarry Smith MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring 1705639f9d9dSBarry Smith 1706d9274352SBarry Smith Level: beginner 1707d9274352SBarry Smith 1708ec5066bdSBarry Smith Notes: 170987497f52SBarry Smith This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()` 1710ec5066bdSBarry Smith 17112ef1f0ffSBarry Smith The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object 17122ef1f0ffSBarry Smith 17131cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()` 1714d9274352SBarry Smith S*/ 1715e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring; 1716639f9d9dSBarry Smith 1717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *); 1718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *); 1719014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer); 1720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *); 1721014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **); 1722014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal); 1723014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring); 1724d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *); 1725014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec); 1726edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]); 1727f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring); 1728f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt); 1729bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *); 1730b1683b59SHong Zhang 1731b1683b59SHong Zhang /*S 1732af27ebaaSBarry Smith MatTransposeColoring - Object for computing a sparse matrix product $C = A*B^T$ via coloring 1733b1683b59SHong Zhang 17342ef1f0ffSBarry Smith Level: developer 1735b1683b59SHong Zhang 17361cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()` 1737b1683b59SHong Zhang S*/ 1738b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring; 1739b1683b59SHong Zhang 1740014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *); 1741014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat); 1742014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat); 1743014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *); 1744b1683b59SHong Zhang 1745d9274352SBarry Smith /*S 1746d9274352SBarry Smith MatPartitioning - Object for managing the partitioning of a matrix or graph 1747d9274352SBarry Smith 1748d9274352SBarry Smith Level: beginner 1749d9274352SBarry Smith 175087497f52SBarry Smith Note: 175187497f52SBarry Smith There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations 175287497f52SBarry Smith via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`) 1753ec5066bdSBarry Smith 1754b5e6e808SPierre Jolivet Developer Note: 17552ef1f0ffSBarry Smith It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed 1756ec5066bdSBarry Smith 17571cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`, 17582ef1f0ffSBarry Smith `MatCoarsenType`, `MatCoarsenType` 1759d9274352SBarry Smith S*/ 176091e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning; 1761d9274352SBarry Smith 176276bdecfbSBarry Smith /*J 17638f6c3df8SBarry Smith MatPartitioningType - String with the name of a PETSc matrix partitioning 1764d9274352SBarry Smith 1765d9274352SBarry Smith Level: beginner 17660d04baf8SBarry Smith dm 17671cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`, 17682ef1f0ffSBarry Smith `MatCoarsenType`, `MatCoarsenType` 176976bdecfbSBarry Smith J*/ 177019fd82e9SBarry Smith typedef const char *MatPartitioningType; 17712692d6eeSBarry Smith #define MATPARTITIONINGCURRENT "current" 1772aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE "average" 17732692d6eeSBarry Smith #define MATPARTITIONINGSQUARE "square" 17742692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis" 17752692d6eeSBarry Smith #define MATPARTITIONINGCHACO "chaco" 17762692d6eeSBarry Smith #define MATPARTITIONINGPARTY "party" 177750d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch" 177888d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch" 177971306c60Sjroman 1780014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *); 178119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType); 1782014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt); 1783014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat); 1784252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt); 1785014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]); 1786014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]); 1787ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool); 1788ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *); 1789014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *); 1790fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *); 1791668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS); 1792f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *); 1793014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *); 1794bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning)); 1795014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer); 1796fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]); 1797014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning); 179819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *); 1799ca161407SBarry Smith 1800ce78bad3SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning); 1801014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning); 1802014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *); 18030752156aSBarry Smith 18049371c9d4SSatish Balay typedef enum { 18059371c9d4SSatish Balay MP_CHACO_MULTILEVEL = 1, 18069371c9d4SSatish Balay MP_CHACO_SPECTRAL = 2, 18079371c9d4SSatish Balay MP_CHACO_LINEAR = 4, 18089371c9d4SSatish Balay MP_CHACO_RANDOM = 5, 18099371c9d4SSatish Balay MP_CHACO_SCATTERED = 6 18109371c9d4SSatish Balay } MPChacoGlobalType; 18116a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[]; 18129371c9d4SSatish Balay typedef enum { 18139371c9d4SSatish Balay MP_CHACO_KERNIGHAN = 1, 18149371c9d4SSatish Balay MP_CHACO_NONE = 2 18159371c9d4SSatish Balay } MPChacoLocalType; 18166a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[]; 18179371c9d4SSatish Balay typedef enum { 18189371c9d4SSatish Balay MP_CHACO_LANCZOS = 0, 18199371c9d4SSatish Balay MP_CHACO_RQI = 1 18209371c9d4SSatish Balay } MPChacoEigenType; 18216a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[]; 1822b6956c12SJose Roman 1823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType); 1824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *); 1825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType); 1826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *); 1827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal); 1828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType); 1829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *); 1830014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal); 1831014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *); 1832014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt); 1833014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *); 183471306c60Sjroman 183571306c60Sjroman #define MP_PARTY_OPT "opt" 183671306c60Sjroman #define MP_PARTY_LIN "lin" 183771306c60Sjroman #define MP_PARTY_SCA "sca" 183871306c60Sjroman #define MP_PARTY_RAN "ran" 183971306c60Sjroman #define MP_PARTY_GBF "gbf" 184071306c60Sjroman #define MP_PARTY_GCF "gcf" 184171306c60Sjroman #define MP_PARTY_BUB "bub" 184271306c60Sjroman #define MP_PARTY_DEF "def" 1843014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *); 184471306c60Sjroman #define MP_PARTY_HELPFUL_SETS "hs" 184571306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl" 184671306c60Sjroman #define MP_PARTY_NONE "no" 1847014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *); 1848014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal); 1849014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool); 1850014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool); 185171306c60Sjroman 18529371c9d4SSatish Balay typedef enum { 18539371c9d4SSatish Balay MP_PTSCOTCH_DEFAULT, 18549371c9d4SSatish Balay MP_PTSCOTCH_QUALITY, 18559371c9d4SSatish Balay MP_PTSCOTCH_SPEED, 18569371c9d4SSatish Balay MP_PTSCOTCH_BALANCE, 18579371c9d4SSatish Balay MP_PTSCOTCH_SAFETY, 18589371c9d4SSatish Balay MP_PTSCOTCH_SCALABILITY 18599371c9d4SSatish Balay } MPPTScotchStrategyType; 18606a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[]; 1861e0f1cffaSJose Roman 1862014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal); 1863014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *); 1864014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType); 1865014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *); 186671306c60Sjroman 1867b43b03e9SMark F. Adams /* 18686294fa2bSFande Kong * hierarchical partitioning 18696294fa2bSFande Kong */ 18704e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *); 18714e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *); 18724e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt); 18734e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt); 18746294fa2bSFande Kong 1875014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *); 1876591294e4SBarry Smith 18770752156aSBarry Smith /* 18788bb0f5c6SPierre Jolivet If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/petsc4py/PETSc/libpetsc4py.pyx 1879d4fbbf0eSBarry Smith */ 18809371c9d4SSatish Balay typedef enum { 18819371c9d4SSatish Balay MATOP_SET_VALUES = 0, 18821c1c02c0SLois Curfman McInnes MATOP_GET_ROW = 1, 18831c1c02c0SLois Curfman McInnes MATOP_RESTORE_ROW = 2, 18841c1c02c0SLois Curfman McInnes MATOP_MULT = 3, 18851c1c02c0SLois Curfman McInnes MATOP_MULT_ADD = 4, 18867c922b88SBarry Smith MATOP_MULT_TRANSPOSE = 5, 18877c922b88SBarry Smith MATOP_MULT_TRANSPOSE_ADD = 6, 18881c1c02c0SLois Curfman McInnes MATOP_SOLVE = 7, 18891c1c02c0SLois Curfman McInnes MATOP_SOLVE_ADD = 8, 18907c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE = 9, 18917c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE_ADD = 10, 18921c1c02c0SLois Curfman McInnes MATOP_LUFACTOR = 11, 18931c1c02c0SLois Curfman McInnes MATOP_CHOLESKYFACTOR = 12, 1894a714c06dSBarry Smith MATOP_SOR = 13, 18951c1c02c0SLois Curfman McInnes MATOP_TRANSPOSE = 14, 18961c1c02c0SLois Curfman McInnes MATOP_GETINFO = 15, 18971c1c02c0SLois Curfman McInnes MATOP_EQUAL = 16, 18981c1c02c0SLois Curfman McInnes MATOP_GET_DIAGONAL = 17, 18991c1c02c0SLois Curfman McInnes MATOP_DIAGONAL_SCALE = 18, 19001c1c02c0SLois Curfman McInnes MATOP_NORM = 19, 19011c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_BEGIN = 20, 19021c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_END = 21, 1903d519adbfSMatthew Knepley MATOP_SET_OPTION = 22, 1904d519adbfSMatthew Knepley MATOP_ZERO_ENTRIES = 23, 1905d519adbfSMatthew Knepley MATOP_ZERO_ROWS = 24, 1906d519adbfSMatthew Knepley MATOP_LUFACTOR_SYMBOLIC = 25, 1907d519adbfSMatthew Knepley MATOP_LUFACTOR_NUMERIC = 26, 1908d519adbfSMatthew Knepley MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27, 1909d519adbfSMatthew Knepley MATOP_CHOLESKY_FACTOR_NUMERIC = 28, 1910e5f2d425SStefano Zampini MATOP_SETUP = 29, 1911d519adbfSMatthew Knepley MATOP_ILUFACTOR_SYMBOLIC = 30, 1912d519adbfSMatthew Knepley MATOP_ICCFACTOR_SYMBOLIC = 31, 1913a5b7ff6bSBarry Smith MATOP_GET_DIAGONAL_BLOCK = 32, 1914e5f2d425SStefano Zampini MATOP_SET_INF = 33, 1915d519adbfSMatthew Knepley MATOP_DUPLICATE = 34, 1916d519adbfSMatthew Knepley MATOP_FORWARD_SOLVE = 35, 1917d519adbfSMatthew Knepley MATOP_BACKWARD_SOLVE = 36, 1918d519adbfSMatthew Knepley MATOP_ILUFACTOR = 37, 1919d519adbfSMatthew Knepley MATOP_ICCFACTOR = 38, 1920d519adbfSMatthew Knepley MATOP_AXPY = 39, 19217dae84e0SHong Zhang MATOP_CREATE_SUBMATRICES = 40, 1922d519adbfSMatthew Knepley MATOP_INCREASE_OVERLAP = 41, 1923d519adbfSMatthew Knepley MATOP_GET_VALUES = 42, 1924d519adbfSMatthew Knepley MATOP_COPY = 43, 1925d519adbfSMatthew Knepley MATOP_GET_ROW_MAX = 44, 1926d519adbfSMatthew Knepley MATOP_SCALE = 45, 1927d519adbfSMatthew Knepley MATOP_SHIFT = 46, 192835153367SBarry Smith MATOP_DIAGONAL_SET = 47, 19299d39f69dSJed Brown MATOP_ZERO_ROWS_COLUMNS = 48, 19309d39f69dSJed Brown MATOP_SET_RANDOM = 49, 1931d519adbfSMatthew Knepley MATOP_GET_ROW_IJ = 50, 1932d519adbfSMatthew Knepley MATOP_RESTORE_ROW_IJ = 51, 1933d519adbfSMatthew Knepley MATOP_GET_COLUMN_IJ = 52, 1934d519adbfSMatthew Knepley MATOP_RESTORE_COLUMN_IJ = 53, 1935d519adbfSMatthew Knepley MATOP_FDCOLORING_CREATE = 54, 1936d519adbfSMatthew Knepley MATOP_COLORING_PATCH = 55, 1937d519adbfSMatthew Knepley MATOP_SET_UNFACTORED = 56, 1938d519adbfSMatthew Knepley MATOP_PERMUTE = 57, 1939d519adbfSMatthew Knepley MATOP_SET_VALUES_BLOCKED = 58, 19407dae84e0SHong Zhang MATOP_CREATE_SUBMATRIX = 59, 1941d519adbfSMatthew Knepley MATOP_DESTROY = 60, 1942d519adbfSMatthew Knepley MATOP_VIEW = 61, 1943d519adbfSMatthew Knepley MATOP_CONVERT_FROM = 62, 19448bb0f5c6SPierre Jolivet MATOP_MATMAT_MULT_SYMBOLIC = 63, 19458bb0f5c6SPierre Jolivet MATOP_MATMAT_MULT_NUMERIC = 64, 19468bb0f5c6SPierre Jolivet MATOP_SET_LOCAL_TO_GLOBAL_MAP = 65, 19478bb0f5c6SPierre Jolivet MATOP_SET_VALUES_LOCAL = 66, 19488bb0f5c6SPierre Jolivet MATOP_ZERO_ROWS_LOCAL = 67, 19498bb0f5c6SPierre Jolivet MATOP_GET_ROW_MAX_ABS = 68, 19508bb0f5c6SPierre Jolivet MATOP_GET_ROW_MIN_ABS = 69, 19518bb0f5c6SPierre Jolivet MATOP_CONVERT = 70, 19528bb0f5c6SPierre Jolivet MATOP_HAS_OPERATION = 71, 19538bb0f5c6SPierre Jolivet MATOP_FD_COLORING_APPLY = 72, 19548bb0f5c6SPierre Jolivet MATOP_SET_FROM_OPTIONS = 73, 19558bb0f5c6SPierre Jolivet MATOP_FIND_ZERO_DIAGONALS = 74, 19568bb0f5c6SPierre Jolivet MATOP_MULT_MULTIPLE = 75, 19578bb0f5c6SPierre Jolivet MATOP_SOLVE_MULTIPLE = 76, 19588bb0f5c6SPierre Jolivet MATOP_GET_INERTIA = 77, 19598bb0f5c6SPierre Jolivet MATOP_LOAD = 78, 19608bb0f5c6SPierre Jolivet MATOP_IS_SYMMETRIC = 79, 19618bb0f5c6SPierre Jolivet MATOP_IS_HERMITIAN = 80, 19628bb0f5c6SPierre Jolivet MATOP_IS_STRUCTURALLY_SYMMETRIC = 81, 19638bb0f5c6SPierre Jolivet MATOP_SET_VALUES_BLOCKEDLOCAL = 82, 19648bb0f5c6SPierre Jolivet MATOP_CREATE_VECS = 83, 19658bb0f5c6SPierre Jolivet MATOP_MAT_MULT_SYMBOLIC = 84, 19668bb0f5c6SPierre Jolivet MATOP_MAT_MULT_NUMERIC = 85, 19678bb0f5c6SPierre Jolivet MATOP_PTAP_NUMERIC = 86, 19688bb0f5c6SPierre Jolivet MATOP_MAT_TRANSPOSE_MULT_SYMBO = 87, 19698bb0f5c6SPierre Jolivet MATOP_MAT_TRANSPOSE_MULT_NUMER = 88, 19708bb0f5c6SPierre Jolivet MATOP_BIND_TO_CPU = 89, 19718bb0f5c6SPierre Jolivet MATOP_PRODUCTSETFROMOPTIONS = 90, 19728bb0f5c6SPierre Jolivet MATOP_PRODUCTSYMBOLIC = 91, 19738bb0f5c6SPierre Jolivet MATOP_PRODUCTNUMERIC = 92, 19748bb0f5c6SPierre Jolivet MATOP_CONJUGATE = 93, 19758bb0f5c6SPierre Jolivet MATOP_VIEW_NATIVE = 94, 19768bb0f5c6SPierre Jolivet MATOP_SET_VALUES_ROW = 95, 19778bb0f5c6SPierre Jolivet MATOP_REAL_PART = 96, 19788bb0f5c6SPierre Jolivet MATOP_IMAGINARY_PART = 97, 19798bb0f5c6SPierre Jolivet MATOP_GET_ROW_UPPER_TRIANGULAR = 98, 19808bb0f5c6SPierre Jolivet MATOP_RESTORE_ROW_UPPER_TRIANG = 99, 19818bb0f5c6SPierre Jolivet MATOP_MAT_SOLVE = 100, 19828bb0f5c6SPierre Jolivet MATOP_MAT_SOLVE_TRANSPOSE = 101, 19838bb0f5c6SPierre Jolivet MATOP_GET_ROW_MIN = 102, 19848bb0f5c6SPierre Jolivet MATOP_GET_COLUMN_VECTOR = 103, 19858bb0f5c6SPierre Jolivet MATOP_MISSING_DIAGONAL = 104, 19868bb0f5c6SPierre Jolivet MATOP_GET_SEQ_NONZERO_STRUCTUR = 105, 19878bb0f5c6SPierre Jolivet MATOP_CREATE = 106, 19888bb0f5c6SPierre Jolivet MATOP_GET_GHOSTS = 107, 19898bb0f5c6SPierre Jolivet MATOP_GET_LOCAL_SUB_MATRIX = 108, 19908bb0f5c6SPierre Jolivet MATOP_RESTORE_LOCALSUB_MATRIX = 109, 19918bb0f5c6SPierre Jolivet MATOP_MULT_DIAGONAL_BLOCK = 110, 19928bb0f5c6SPierre Jolivet MATOP_HERMITIAN_TRANSPOSE = 111, 19938bb0f5c6SPierre Jolivet MATOP_MULT_HERMITIAN_TRANSPOSE = 112, 19948bb0f5c6SPierre Jolivet MATOP_MULT_HERMITIAN_TRANS_ADD = 113, 19958bb0f5c6SPierre Jolivet MATOP_GET_MULTI_PROC_BLOCK = 114, 19968bb0f5c6SPierre Jolivet MATOP_FIND_NONZERO_ROWS = 115, 19978bb0f5c6SPierre Jolivet MATOP_GET_COLUMN_NORMS = 116, 19988bb0f5c6SPierre Jolivet MATOP_INVERT_BLOCK_DIAGONAL = 117, 19998bb0f5c6SPierre Jolivet MATOP_INVERT_VBLOCK_DIAGONAL = 118, 20008bb0f5c6SPierre Jolivet MATOP_CREATE_SUB_MATRICES_MPI = 119, 20018bb0f5c6SPierre Jolivet MATOP_SET_VALUES_BATCH = 120, 20028bb0f5c6SPierre Jolivet MATOP_TRANSPOSE_MAT_MULT_SYMBO = 121, 20038bb0f5c6SPierre Jolivet MATOP_TRANSPOSE_MAT_MULT_NUMER = 122, 20048bb0f5c6SPierre Jolivet MATOP_TRANSPOSE_COLORING_CREAT = 123, 20058bb0f5c6SPierre Jolivet MATOP_TRANS_COLORING_APPLY_SPT = 124, 20068bb0f5c6SPierre Jolivet MATOP_TRANS_COLORING_APPLY_DEN = 125, 20078bb0f5c6SPierre Jolivet MATOP_RART_NUMERIC = 126, 20088bb0f5c6SPierre Jolivet MATOP_SET_BLOCK_SIZES = 127, 20098bb0f5c6SPierre Jolivet MATOP_RESIDUAL = 128, 20108bb0f5c6SPierre Jolivet MATOP_FDCOLORING_SETUP = 129, 20118bb0f5c6SPierre Jolivet MATOP_FIND_OFFBLOCK_ENTRIES = 130, 20128bb0f5c6SPierre Jolivet MATOP_MPICONCATENATESEQ = 131, 20138bb0f5c6SPierre Jolivet MATOP_DESTROYSUBMATRICES = 132, 20148bb0f5c6SPierre Jolivet MATOP_MAT_TRANSPOSE_SOLVE = 133, 20158bb0f5c6SPierre Jolivet MATOP_GET_VALUES_LOCAL = 134, 20168bb0f5c6SPierre Jolivet MATOP_CREATE_GRAPH = 135, 20178bb0f5c6SPierre Jolivet MATOP_TRANSPOSE_SYMBOLIC = 136, 20188bb0f5c6SPierre Jolivet MATOP_ELIMINATE_ZEROS = 137, 20198bb0f5c6SPierre Jolivet MATOP_GET_ROW_SUM_ABS = 138, 20208bb0f5c6SPierre Jolivet MATOP_GET_FACTOR = 139, 20218bb0f5c6SPierre Jolivet MATOP_GET_BLOCK_DIAGONAL = 140, /* NOTE: caller of the two op functions owns the returned matrix */ 20228bb0f5c6SPierre Jolivet MATOP_GET_VBLOCK_DIAGONAL = 141, /* and need to destroy it after use. */ 20238bb0f5c6SPierre Jolivet MATOP_COPY_HASH_TO_XAIJ = 142 2024fae171e0SBarry Smith } MatOperation; 20250c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void)); 2026976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void)); 2027976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *); 202894342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *); 2029edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatProductClear()", ) static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A) 2030d71ae5a4SJacob Faibussowitsch { 20319371c9d4SSatish Balay return MatProductClear(A); 20329371c9d4SSatish Balay } 2033014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void)); 2034014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void)); 2035014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *); 2036d1319cabSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscCtxDestroyFn *); 2037db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType); 2038f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 2039f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 20400c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat); 2041b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType); 2042b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *); 2043112a2221SBarry Smith 204490ace30eSBarry Smith /* 204590ace30eSBarry Smith Codes for matrices stored on disk. By default they are 204690ace30eSBarry Smith stored in a universal format. By changing the format with 20476a9046bcSBarry Smith PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will 204890ace30eSBarry Smith be stored in a way natural for the matrix, for example dense matrices 204990ace30eSBarry Smith would be stored as dense. Matrices stored this way may only be 2050f4403165SShri Abhyankar read into matrices of the same type. 205190ace30eSBarry Smith */ 205290ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1 205390ace30eSBarry Smith 2054014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal); 205575d48cdbSStefano Zampini 20568546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType); 205775d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 20584f58015eSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetAllowRepeated(Mat, PetscBool); 20594f58015eSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetAllowRepeated(Mat, PetscBool *); 206075d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool); 2061f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool); 2062014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *); 20633b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *); 2064014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat); 2065e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 20661f4e1ec7SBarry Smith 2067d9274352SBarry Smith /*S 2068d9274352SBarry Smith MatNullSpace - Object that removes a null space from a vector, i.e. 2069cb6b9846SMatthew Knepley orthogonalizes the vector to a subspace 2070d9274352SBarry Smith 2071f7a9e4ceSBarry Smith Level: advanced 2072d9274352SBarry Smith 20731cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()` 2074d9274352SBarry Smith S*/ 207574637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace; 2076d9274352SBarry Smith 2077*34731ec5SBarry Smith /*S 2078*34731ec5SBarry Smith MatNullSpaceRemoveFn - Function provided to `MatNullSpaceSetFunction()` that removes the null space from a vector 2079*34731ec5SBarry Smith 2080*34731ec5SBarry Smith Level: advanced 2081*34731ec5SBarry Smith 2082*34731ec5SBarry Smith Calling Sequence: 2083*34731ec5SBarry Smith + nsp - the `MatNullSpace` object 2084*34731ec5SBarry Smith . x - the vector from which to remove the null space 2085*34731ec5SBarry Smith - ctx - [optional] user-defined function context provided with `MatNullSpaceSetFunction()` 2086*34731ec5SBarry Smith 2087*34731ec5SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()` 2088*34731ec5SBarry Smith S*/ 2089*34731ec5SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode(MatNullSpaceRemoveFn)(MatNullSpace nsp, Vec x, void *ctx); 2090*34731ec5SBarry Smith 2091014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *); 2092*34731ec5SBarry Smith PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, MatNullSpaceRemoveFn *, void *); 2093014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *); 2094d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec); 2095014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *); 20965fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *); 20975fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace); 2098014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace); 2099014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace); 2100014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *); 21014849c82aSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNullSpaces(PetscInt, Mat[], MatNullSpace *[]); 21024849c82aSBarry Smith PETSC_EXTERN PetscErrorCode MatRestoreNullSpaces(PetscInt, Mat[], MatNullSpace *[]); 2103014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *); 2104014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer); 2105014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **); 2106014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *); 210774637425SBarry Smith 2108014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS); 2109014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal); 2110014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *); 21113f1d51d7SBarry Smith 2112014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *); 2113014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *); 2114014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *); 2115c4f061fbSSatish Balay 21160bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *); 21170bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *); 21180bacdadaSStefano Zampini 2119edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperator()", ) static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B) 2120d71ae5a4SJacob Faibussowitsch { 2121f22e26b7SPierre Jolivet return MatComputeOperator(A, PETSC_NULLPTR, B); 21229371c9d4SSatish Balay } 2123edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperatorTranspose()", ) static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B) 2124d71ae5a4SJacob Faibussowitsch { 2125f22e26b7SPierre Jolivet return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B); 21269371c9d4SSatish Balay } 2127b0a32e0cSBarry Smith 212849bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *); 212949bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *); 2130a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **); 2131a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2132a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **); 2133a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **); 2134a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **); 2135a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2136a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **); 2137a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **); 2138dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat); 2139dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]); 2140dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]); 2141910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *); 214249bd79ccSDebojyoti Ghosh 2143014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec); 214404f1ad80SBarry Smith 21454bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDInitializePackage(void); 21464bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDFinalizePackage(void); 21474bf303faSJacob Faibussowitsch 2148014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2149014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec); 2150014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *); 2151014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *)); 2152014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec)); 2153014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt); 2154014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat); 2155014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal); 2156014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt); 2157014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *); 2158014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]); 2159014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *); 2160014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *); 2161e884886fSBarry Smith 21626370053bSBarry Smith /*S 21636370053bSBarry Smith MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free 21646370053bSBarry Smith Jacobian vector products 2165e884886fSBarry Smith 21662ef1f0ffSBarry Smith Level: developer 21672ef1f0ffSBarry Smith 216895452b02SPatrick Sanan Notes: 216987497f52SBarry Smith `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure 21706370053bSBarry Smith 21712ef1f0ffSBarry Smith MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure 21726370053bSBarry Smith 21732ef1f0ffSBarry Smith This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator` 21746370053bSBarry Smith 21751cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`, 21762ef1f0ffSBarry Smith `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator` 21776370053bSBarry Smith S*/ 2178e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD; 2179e884886fSBarry Smith 218076bdecfbSBarry Smith /*J 21812ef1f0ffSBarry Smith MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function 2182e884886fSBarry Smith 218316a05f60SBarry Smith Values: 2184af27ebaaSBarry Smith + `MATMFFD_DS` - an algorithm described by Dennis and Schnabel {cite}`dennis:83` 2185af27ebaaSBarry Smith - `MATMFFD_WP` - the Walker-Pernice {cite}`pw98` strategy. 218616a05f60SBarry Smith 2187e884886fSBarry Smith Level: beginner 2188e884886fSBarry Smith 21891cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()` 219076bdecfbSBarry Smith J*/ 219119fd82e9SBarry Smith typedef const char *MatMFFDType; 2192e884886fSBarry Smith #define MATMFFD_DS "ds" 2193e884886fSBarry Smith #define MATMFFD_WP "wp" 2194e884886fSBarry Smith 219519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType); 2196bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD)); 2197e884886fSBarry Smith 2198014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal); 2199014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool); 2200e884886fSBarry Smith 220161ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType); 220261ab5df0SBarry Smith 2203014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *); 2204014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *); 22057dbadf16SMatthew Knepley 220653022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS 22078434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscScalar(MatH2OpusKernelFn)(PetscInt, PetscReal[], PetscReal[], void *); 22088434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatH2OpusKernelFn *MatH2OpusKernel; 2209659ebe53SBarry Smith 22108434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernelFn *, void *, PetscReal, PetscInt, PetscInt, Mat *); 221153022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *); 221253022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal); 221353022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat); 221453022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal); 221553022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool); 221653022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *); 221753022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *); 221853022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *); 2219300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar); 2220a0d2e7d8SStefano Zampini #endif 2221a0d2e7d8SStefano Zampini 2222c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL 22238434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode(MatHtoolKernelFn)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *); 22248434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatHtoolKernelFn *MatHtoolKernel; 2225659ebe53SBarry Smith 22268434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernelFn *, void *, Mat *); 22278434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernelFn *, void *); 222898e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *); 222998e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *); 223098e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool); 22312ef1f0ffSBarry Smith 2232c7a4214aSPierre Jolivet /*E 223387497f52SBarry Smith MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL` 2234c7a4214aSPierre Jolivet 2235c7a4214aSPierre Jolivet Values: 223687497f52SBarry Smith + `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation 223787497f52SBarry Smith . `MAT_HTOOL_COMPRESSOR_FULL_ACA` - full adaptive cross approximation 223887497f52SBarry Smith - `MAT_HTOOL_COMPRESSOR_SVD` - singular value decomposition 2239c7a4214aSPierre Jolivet 224016a05f60SBarry Smith Level: intermediate 224116a05f60SBarry Smith 22421cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType` 2243c7a4214aSPierre Jolivet E*/ 22449371c9d4SSatish Balay typedef enum { 22459371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA, 22469371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_FULL_ACA, 22479371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_SVD 22489371c9d4SSatish Balay } MatHtoolCompressorType; 22492ef1f0ffSBarry Smith 225098e73e17SPierre Jolivet /*E 225187497f52SBarry Smith MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL` 225298e73e17SPierre Jolivet 225398e73e17SPierre Jolivet Values: 225487497f52SBarry Smith + `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default) - axis computed via principle component analysis, split uniformly 225587497f52SBarry Smith . `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC` - axis computed via principle component analysis, split barycentrically 225687497f52SBarry Smith . `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR` - axis along the largest extent of the bounding box, split uniformly 225787497f52SBarry Smith - `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically 225898e73e17SPierre Jolivet 225916a05f60SBarry Smith Level: intermediate 226016a05f60SBarry Smith 22612ef1f0ffSBarry Smith Note: 22622ef1f0ffSBarry Smith Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types 226398e73e17SPierre Jolivet 22641cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType` 226598e73e17SPierre Jolivet E*/ 22669371c9d4SSatish Balay typedef enum { 22679371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_PCA_REGULAR, 22689371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC, 22699371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR, 22709371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC 22719371c9d4SSatish Balay } MatHtoolClusteringType; 2272c7a4214aSPierre Jolivet #endif 2273c7a4214aSPierre Jolivet 227497969023SHong Zhang #ifdef PETSC_HAVE_MUMPS 2275014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt); 2276bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *); 2277b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal); 2278bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *); 2279bc6112feSHong Zhang 2280ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *); 2281ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *); 2282ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *); 2283ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *); 22845c0bae8cSAshish Patel PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **); 228589a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat); 22860e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat); 228797969023SHong Zhang #endif 228823a5497aSJed Brown 2289b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO 2290d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt); 2291b500a6b7SJose David Bermeol #endif 2292b500a6b7SJose David Bermeol 2293d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO 2294d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt); 2295d305a81bSVasiliy Kozyrev #endif 2296d305a81bSVasiliy Kozyrev 2297d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU 2298014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal); 2299d954db57SHong Zhang #endif 2300d954db57SHong Zhang 2301fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST 2302fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *); 2303fb785984SHong Zhang #endif 2304fb785984SHong Zhang 2305575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK 2306542aee0fSPieter Ghysels /*E 230729e0a805SPieter Ghysels MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK` 2308542aee0fSPieter Ghysels 23092ef1f0ffSBarry Smith Values: 23102ef1f0ffSBarry Smith + `MAT_STRUMPACK_NATURAL` - use the current ordering 23112ef1f0ffSBarry Smith . `MAT_STRUMPACK_METIS` - use MeTis to compute an ordering 23122ef1f0ffSBarry Smith . `MAT_STRUMPACK_PARMETIS` - use ParMeTis to compute an ordering 23132ef1f0ffSBarry Smith . `MAT_STRUMPACK_SCOTCH` - use Scotch to compute an ordering 23142ef1f0ffSBarry Smith . `MAT_STRUMPACK_PTSCOTCH` - use parallel Scotch to compute an ordering 231529e0a805SPieter Ghysels . `MAT_STRUMPACK_RCM` - use an RCM ordering 231629e0a805SPieter Ghysels . `MAT_STRUMPACK_GEOMETRIC` - use a geometric ordering (needs mesh info from user) 231729e0a805SPieter Ghysels . `MAT_STRUMPACK_AMD` - approximate minimum degree 231829e0a805SPieter Ghysels . `MAT_STRUMPACK_MMD` - multiple minimum degree 231929e0a805SPieter Ghysels . `MAT_STRUMPACK_AND` - approximate nested dissection 232029e0a805SPieter Ghysels . `MAT_STRUMPACK_MLF` - minimum local fill 232129e0a805SPieter Ghysels - `MAT_STRUMPACK_SPECTRAL` - spectral nested dissection 23222ef1f0ffSBarry Smith 232316a05f60SBarry Smith Level: intermediate 232416a05f60SBarry Smith 23252ef1f0ffSBarry Smith Developer Note: 23262ef1f0ffSBarry Smith Should be called `MatSTRUMPACKReorderingType` 23272ef1f0ffSBarry Smith 232829e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetReordering()` 2329542aee0fSPieter Ghysels E*/ 23309371c9d4SSatish Balay typedef enum { 233129e0a805SPieter Ghysels MAT_STRUMPACK_NATURAL, 233229e0a805SPieter Ghysels MAT_STRUMPACK_METIS, 233329e0a805SPieter Ghysels MAT_STRUMPACK_PARMETIS, 233429e0a805SPieter Ghysels MAT_STRUMPACK_SCOTCH, 233529e0a805SPieter Ghysels MAT_STRUMPACK_PTSCOTCH, 233629e0a805SPieter Ghysels MAT_STRUMPACK_RCM, 233729e0a805SPieter Ghysels MAT_STRUMPACK_GEOMETRIC, 233829e0a805SPieter Ghysels MAT_STRUMPACK_AMD, 233929e0a805SPieter Ghysels MAT_STRUMPACK_MMD, 234029e0a805SPieter Ghysels MAT_STRUMPACK_AND, 234129e0a805SPieter Ghysels MAT_STRUMPACK_MLF, 234229e0a805SPieter Ghysels MAT_STRUMPACK_SPECTRAL 23439371c9d4SSatish Balay } MatSTRUMPACKReordering; 23442ef1f0ffSBarry Smith 234534f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering); 234629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetReordering(Mat, MatSTRUMPACKReordering *); 234729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricNxyz(Mat, PetscInt, PetscInt, PetscInt); 234829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricComponents(Mat, PetscInt); 234929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricWidth(Mat, PetscInt); 2350575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool); 235129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetColPerm(Mat, PetscBool *); 235229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGPU(Mat, PetscBool); 235329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetGPU(Mat, PetscBool *); 235429e0a805SPieter Ghysels 235529e0a805SPieter Ghysels /*E 235629e0a805SPieter Ghysels MatSTRUMPACKCompressionType - Compression used in the approximate sparse factorization solver `MATSOLVERSTRUMPACK` 235729e0a805SPieter Ghysels 235829e0a805SPieter Ghysels Values: 235929e0a805SPieter Ghysels + `MAT_STRUMPACK_COMPRESSION_TYPE_NONE` - no compression, direct solver 236029e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_HSS` - hierarchically semi-separable 236129e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_BLR` - block low rank 236229e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_HODLR` - hierarchically off-diagonal low rank (requires ButterfyPACK support, configure with --download-butterflypack) 236329e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR` - hybrid of BLR and HODLR (requires ButterfyPACK support, configure with --download-butterflypack) 236429e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR` - hybrid of lossy (ZFP), BLR and HODLR (requires ButterfyPACK and ZFP support, configure with --download-butterflypack --download-zfp) 236529e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS` - lossless compression (requires ZFP support, configure with --download-zfp) 236629e0a805SPieter Ghysels - `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY` - lossy compression (requires ZFP support, configure with --download-zfp) 236729e0a805SPieter Ghysels 236829e0a805SPieter Ghysels Level: intermediate 236929e0a805SPieter Ghysels 237029e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetCompression()` 237129e0a805SPieter Ghysels E*/ 237229e0a805SPieter Ghysels typedef enum { 237329e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_NONE, 237429e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_HSS, 237529e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_BLR, 237629e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_HODLR, 237729e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR, 237829e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR, 237929e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS, 238029e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY 238129e0a805SPieter Ghysels } MatSTRUMPACKCompressionType; 238229e0a805SPieter Ghysels 238329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompression(Mat, MatSTRUMPACKCompressionType); 238429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompression(Mat, MatSTRUMPACKCompressionType *); 238529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompRelTol(Mat, PetscReal); 238629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompRelTol(Mat, PetscReal *); 238729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompAbsTol(Mat, PetscReal); 238829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompAbsTol(Mat, PetscReal *); 238929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompMinSepSize(Mat, PetscInt); 239029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompMinSepSize(Mat, PetscInt *); 239129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLeafSize(Mat, PetscInt); 239229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLeafSize(Mat, PetscInt *); 239329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLossyPrecision(Mat, PetscInt); 239429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLossyPrecision(Mat, PetscInt *); 239529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompButterflyLevels(Mat, PetscInt); 239629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompButterflyLevels(Mat, PetscInt *); 2397575704cbSPieter Ghysels #endif 2398575704cbSPieter Ghysels 2399b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool); 24002216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *); 2401edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 13, 0, "MatBindToCPU()", ) static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg) 2402d71ae5a4SJacob Faibussowitsch { 24039371c9d4SSatish Balay return MatBindToCPU(A, flg); 24049371c9d4SSatish Balay } 240565a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool); 2406e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *); 2407e7e92044SBarry Smith 2408aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA 24093f9c0db1SPaul Mullowney /*E 24102ef1f0ffSBarry Smith MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU) 24112692e278SPaul Mullowney matrices. 2412e057df02SPaul Mullowney 24132ef1f0ffSBarry Smith Values: 241487497f52SBarry Smith + `MAT_CUSPARSE_CSR` - Compressed Sparse Row 241587497f52SBarry Smith . `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later). 241687497f52SBarry Smith - `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later). 2417e057df02SPaul Mullowney 2418e057df02SPaul Mullowney Level: intermediate 2419e057df02SPaul Mullowney 24201cc06b55SBarry Smith .seealso: [](ch_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation` 2421e057df02SPaul Mullowney E*/ 2422e057df02SPaul Mullowney 24239371c9d4SSatish Balay typedef enum { 24249371c9d4SSatish Balay MAT_CUSPARSE_CSR, 24259371c9d4SSatish Balay MAT_CUSPARSE_ELL, 24269371c9d4SSatish Balay MAT_CUSPARSE_HYB 24279371c9d4SSatish Balay } MatCUSPARSEStorageFormat; 2428e057df02SPaul Mullowney 2429e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */ 2430e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[]; 2431e057df02SPaul Mullowney 24323f9c0db1SPaul Mullowney /*E 24332ef1f0ffSBarry Smith MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU) 24342692e278SPaul Mullowney matrices whose operation should use a particular storage format. 2435e057df02SPaul Mullowney 24362ef1f0ffSBarry Smith Values: 24374cf0e950SBarry Smith + `MAT_CUSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()` 24384cf0e950SBarry Smith . `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()` 24394cf0e950SBarry Smith . `MAT_CUSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()` 24402ef1f0ffSBarry Smith - `MAT_CUSPARSE_ALL` - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices 2441e057df02SPaul Mullowney 2442e057df02SPaul Mullowney Level: intermediate 2443e057df02SPaul Mullowney 24441cc06b55SBarry Smith .seealso: [](ch_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat` 2445e057df02SPaul Mullowney E*/ 24469371c9d4SSatish Balay typedef enum { 24479371c9d4SSatish Balay MAT_CUSPARSE_MULT_DIAG, 24489371c9d4SSatish Balay MAT_CUSPARSE_MULT_OFFDIAG, 24499371c9d4SSatish Balay MAT_CUSPARSE_MULT, 24509371c9d4SSatish Balay MAT_CUSPARSE_ALL 24519371c9d4SSatish Balay } MatCUSPARSEFormatOperation; 2452e057df02SPaul Mullowney 245310e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 245410e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2455e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat); 2456365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool); 24575f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 24585f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 24595f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **); 24605f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **); 24615f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **); 24625f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **); 24635f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **); 24645f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **); 2465637a0070SStefano Zampini 2466637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 2467637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 2468637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **); 2469637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **); 2470637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **); 2471637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **); 2472637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **); 2473637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **); 2474637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *); 2475d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *); 2476637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat); 24773d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *); 24782d1451d4SHong Zhang 24792d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 24802d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 24819ae82921SPaul Mullowney #endif 24829ae82921SPaul Mullowney 248347d993e7Ssuyashtn #ifdef PETSC_HAVE_HIP 248447d993e7Ssuyashtn /*E 24852ef1f0ffSBarry Smith MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU) 248647d993e7Ssuyashtn matrices. 248747d993e7Ssuyashtn 24882ef1f0ffSBarry Smith Values: 24892ef1f0ffSBarry Smith + `MAT_HIPSPARSE_CSR` - Compressed Sparse Row 24902ef1f0ffSBarry Smith . `MAT_HIPSPARSE_ELL` - Ellpack 24912ef1f0ffSBarry Smith - `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format 249247d993e7Ssuyashtn 249316a05f60SBarry Smith Level: intermediate 249416a05f60SBarry Smith 24951cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation` 249647d993e7Ssuyashtn E*/ 249747d993e7Ssuyashtn 249847d993e7Ssuyashtn typedef enum { 249947d993e7Ssuyashtn MAT_HIPSPARSE_CSR, 250047d993e7Ssuyashtn MAT_HIPSPARSE_ELL, 250147d993e7Ssuyashtn MAT_HIPSPARSE_HYB 250247d993e7Ssuyashtn } MatHIPSPARSEStorageFormat; 250347d993e7Ssuyashtn 250447d993e7Ssuyashtn /* these will be strings associated with enumerated type defined above */ 250547d993e7Ssuyashtn PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[]; 250647d993e7Ssuyashtn 250747d993e7Ssuyashtn /*E 25082ef1f0ffSBarry Smith MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU) 250947d993e7Ssuyashtn matrices whose operation should use a particular storage format. 251047d993e7Ssuyashtn 25112ef1f0ffSBarry Smith Values: 25122ef1f0ffSBarry Smith + `MAT_HIPSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()` 25134cf0e950SBarry Smith . `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()` 25142ef1f0ffSBarry Smith . `MAT_HIPSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()` 25152ef1f0ffSBarry Smith - `MAT_HIPSPARSE_ALL` - sets the storage format for all HIPSPARSE (GPU) matrices 25162ef1f0ffSBarry Smith 251716a05f60SBarry Smith Level: intermediate 251816a05f60SBarry Smith 25191cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat` 252047d993e7Ssuyashtn E*/ 252147d993e7Ssuyashtn typedef enum { 252247d993e7Ssuyashtn MAT_HIPSPARSE_MULT_DIAG, 252347d993e7Ssuyashtn MAT_HIPSPARSE_MULT_OFFDIAG, 252447d993e7Ssuyashtn MAT_HIPSPARSE_MULT, 252547d993e7Ssuyashtn MAT_HIPSPARSE_ALL 252647d993e7Ssuyashtn } MatHIPSPARSEFormatOperation; 252747d993e7Ssuyashtn 252847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 252947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 253047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat); 253147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool); 253247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 253347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 253447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **); 253547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **); 253647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **); 253747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **); 253847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **); 253947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **); 254047d993e7Ssuyashtn 254147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 254247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 254347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **); 254447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **); 254547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **); 254647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **); 254747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **); 254847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **); 254947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *); 255047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *); 255147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat); 25523d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *); 2553773bf0f6SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2554773bf0f6SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 255547d993e7Ssuyashtn #endif 255647d993e7Ssuyashtn 2557d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL) 2558d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2559d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2560d67ff14aSKarl Rupp #endif 2561d67ff14aSKarl Rupp 25624bf303faSJacob Faibussowitsch #if PetscDefined(HAVE_KOKKOS) 25634bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 25644bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 25654bf303faSJacob Faibussowitsch #endif 25664bf303faSJacob Faibussowitsch 256754efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW) 2568014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec); 2569014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec); 25702a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *); 257154efbe56SHong Zhang #endif 257254efbe56SHong Zhang 2573d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 2574d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2575d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt); 2576d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *); 2577d24d4204SJose E. Roman #endif 2578d24d4204SJose E. Roman 2579014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *); 2580014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *); 2581014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]); 2582014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]); 2583014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***); 2584014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *); 258519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType); 2586014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]); 2587014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat); 2588d8588912SDave May 25892ce66baaSPierre Jolivet PETSC_EXTERN PetscErrorCode MatFilter(Mat, PetscReal, PetscBool, PetscBool); 25902ce66baaSPierre Jolivet PETSC_DEPRECATED_FUNCTION(3, 20, 0, "MatFilter()", ) static inline PetscErrorCode MatChop(Mat A, PetscReal tol) 25912ce66baaSPierre Jolivet { 25922ce66baaSPierre Jolivet return MatFilter(A, tol, PETSC_FALSE, PETSC_FALSE); 25932ce66baaSPierre Jolivet } 2594e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *); 25954325cce7SMatthew G Knepley 2596b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **); 259753dd7562SDmitry Karpeev 2598c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat); 2599c094ef40SMatthew G. Knepley 260002218ef1SBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderMerge(Mat, Mat *); 2601539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *); 26021a2c6b5cSJunchao Zhang 26037ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *); 260472833a62Smarkadams4 2605e02fb3cdSMark Adams PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, PetscInt, PetscInt[], Mat *); 260658c11ad4SPierre Jolivet PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat, PetscBool); 2607ad6ad4e1SHansol Suh 2608d16ceb75SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *); 26093444e80cSBarry Smith 26103444e80cSBarry Smith PETSC_EXTERN PetscErrorCode MatSetHPL(Mat, int); 26113444e80cSBarry Smith #define PETSCBMHPL "hpl" 2612ce78bad3SBarry Smith 2613ce78bad3SBarry Smith PETSC_EXTERN PetscErrorCode MatDFischer(Mat, Vec, Vec, Vec, Vec, Vec, Vec, Vec, Vec); 2614