12eac72dbSBarry Smith /* 22eac72dbSBarry Smith Include file for the matrix component of PETSc 32eac72dbSBarry Smith */ 426bd1501SBarry Smith #ifndef PETSCMAT_H 526bd1501SBarry Smith #define PETSCMAT_H 6ac09b921SBarry Smith 72c8e378dSBarry Smith #include <petscvec.h> 82eac72dbSBarry Smith 9ac09b921SBarry Smith /* SUBMANSEC = Mat */ 10ac09b921SBarry Smith 11d9274352SBarry Smith /*S 128f6c3df8SBarry Smith Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without 138f6c3df8SBarry Smith an explicit sparse representation (such as matrix-free operators) 142eac72dbSBarry Smith 15d91e6319SBarry Smith Level: beginner 16d91e6319SBarry Smith 172ef1f0ffSBarry Smith Note: 181cc06b55SBarry Smith See [](doc_matrix), [](ch_matrices) and `MatType` for available matrix types 192ef1f0ffSBarry Smith 201cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()` 21d9274352SBarry Smith S*/ 22d9274352SBarry Smith typedef struct _p_Mat *Mat; 23d9274352SBarry Smith 2476bdecfbSBarry Smith /*J 258f6c3df8SBarry Smith MatType - String with the name of a PETSc matrix type 26d9274352SBarry Smith 27d9274352SBarry Smith Level: beginner 28d9274352SBarry Smith 292ef1f0ffSBarry Smith Note: 302ef1f0ffSBarry Smith [](doc_matrix) for a table of available matrix types 312ef1f0ffSBarry Smith 321cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()` 3376bdecfbSBarry Smith J*/ 3419fd82e9SBarry Smith typedef const char *MatType; 35273d9f13SBarry Smith #define MATSAME "same" 365a11e1b2SBarry Smith #define MATMAIJ "maij" 37273d9f13SBarry Smith #define MATSEQMAIJ "seqmaij" 38273d9f13SBarry Smith #define MATMPIMAIJ "mpimaij" 3949bd79ccSDebojyoti Ghosh #define MATKAIJ "kaij" 4049bd79ccSDebojyoti Ghosh #define MATSEQKAIJ "seqkaij" 4149bd79ccSDebojyoti Ghosh #define MATMPIKAIJ "mpikaij" 42273d9f13SBarry Smith #define MATIS "is" 435a11e1b2SBarry Smith #define MATAIJ "aij" 44273d9f13SBarry Smith #define MATSEQAIJ "seqaij" 45273d9f13SBarry Smith #define MATMPIAIJ "mpiaij" 465a11e1b2SBarry Smith #define MATAIJCRL "aijcrl" 475a11e1b2SBarry Smith #define MATSEQAIJCRL "seqaijcrl" 485a11e1b2SBarry Smith #define MATMPIAIJCRL "mpiaijcrl" 499ae82921SPaul Mullowney #define MATAIJCUSPARSE "aijcusparse" 509ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE "seqaijcusparse" 519ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE "mpiaijcusparse" 5247d993e7Ssuyashtn #define MATAIJHIPSPARSE "aijhipsparse" 5347d993e7Ssuyashtn #define MATSEQAIJHIPSPARSE "seqaijhipsparse" 5447d993e7Ssuyashtn #define MATMPIAIJHIPSPARSE "mpiaijhipsparse" 558c3ff71bSJunchao Zhang #define MATAIJKOKKOS "aijkokkos" 568c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS "seqaijkokkos" 578c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS "mpiaijkokkos" 58d67ff14aSKarl Rupp #define MATAIJVIENNACL "aijviennacl" 59d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL "seqaijviennacl" 60d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL "mpiaijviennacl" 615a11e1b2SBarry Smith #define MATAIJPERM "aijperm" 625a11e1b2SBarry Smith #define MATSEQAIJPERM "seqaijperm" 635a11e1b2SBarry Smith #define MATMPIAIJPERM "mpiaijperm" 644dfdc2d9SRichard Tran Mills #define MATAIJSELL "aijsell" 654dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL "seqaijsell" 664dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL "mpiaijsell" 674a2a386eSRichard Tran Mills #define MATAIJMKL "aijmkl" 684a2a386eSRichard Tran Mills #define MATSEQAIJMKL "seqaijmkl" 694a2a386eSRichard Tran Mills #define MATMPIAIJMKL "mpiaijmkl" 70b5b72c8aSIrina Sokolova #define MATBAIJMKL "baijmkl" 71b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL "seqbaijmkl" 72b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL "mpibaijmkl" 73273d9f13SBarry Smith #define MATSHELL "shell" 74c1fff1c6SRichard Tran Mills #define MATCENTERING "centering" 755a11e1b2SBarry Smith #define MATDENSE "dense" 76637a0070SStefano Zampini #define MATDENSECUDA "densecuda" 7747d993e7Ssuyashtn #define MATDENSEHIP "densehip" 78209238afSKris Buschelman #define MATSEQDENSE "seqdense" 79bfc799aaSStefano Zampini #define MATSEQDENSECUDA "seqdensecuda" 8047d993e7Ssuyashtn #define MATSEQDENSEHIP "seqdensehip" 81273d9f13SBarry Smith #define MATMPIDENSE "mpidense" 82637a0070SStefano Zampini #define MATMPIDENSECUDA "mpidensecuda" 8347d993e7Ssuyashtn #define MATMPIDENSEHIP "mpidensehip" 84db31f6deSJed Brown #define MATELEMENTAL "elemental" 85d24d4204SJose E. Roman #define MATSCALAPACK "scalapack" 865a11e1b2SBarry Smith #define MATBAIJ "baij" 87273d9f13SBarry Smith #define MATSEQBAIJ "seqbaij" 88273d9f13SBarry Smith #define MATMPIBAIJ "mpibaij" 89273d9f13SBarry Smith #define MATMPIADJ "mpiadj" 905a11e1b2SBarry Smith #define MATSBAIJ "sbaij" 91273d9f13SBarry Smith #define MATSEQSBAIJ "seqsbaij" 92273d9f13SBarry Smith #define MATMPISBAIJ "mpisbaij" 93cebc7f6cSBarry Smith #define MATMFFD "mffd" 94c8a8475eSBarry Smith #define MATNORMAL "normal" 95c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN "normalh" 96ab92ecdeSBarry Smith #define MATLRC "lrc" 972a6744ebSBarry Smith #define MATSCATTER "scatter" 98421e10b8SBarry Smith #define MATBLOCKMAT "blockmat" 99793850ffSBarry Smith #define MATCOMPOSITE "composite" 1001f8c7532SHong Zhang #define MATFFT "fft" 1011f8c7532SHong Zhang #define MATFFTW "fftw" 102e133240eSMatthew G Knepley #define MATSEQCUFFT "seqcufft" 10347d993e7Ssuyashtn #define MATSEQHIPFFT "seqhipfft" 104edd03b47SJacob Faibussowitsch #define MATTRANSPOSEMAT PETSC_DEPRECATED_MACRO(3, 18, 0, "MATTRANSPOSEVIRTUAL", ) "transpose" 105013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL "transpose" 106013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose" 10772ca8751SBarry Smith #define MATSCHURCOMPLEMENT "schurcomplement" 1081d6018f0SLisandro Dalcin #define MATPYTHON "python" 10963c07aadSStefano Zampini #define MATHYPRE "hypre" 110f91d8e95SBarry Smith #define MATHYPRESTRUCT "hyprestruct" 111a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT "hypresstruct" 112ee1cef2cSJed Brown #define MATSUBMATRIX "submatrix" 1132c0dbf93SJed Brown #define MATLOCALREF "localref" 114d8588912SDave May #define MATNEST "nest" 115c094ef40SMatthew G. Knepley #define MATPREALLOCATOR "preallocator" 116d4002b98SHong Zhang #define MATSELL "sell" 117d4002b98SHong Zhang #define MATSEQSELL "seqsell" 118d4002b98SHong Zhang #define MATMPISELL "mpisell" 1192d1451d4SHong Zhang #define MATSELLCUDA "sellcuda" 1202d1451d4SHong Zhang #define MATSEQSELLCUDA "seqsellcuda" 1212d1451d4SHong Zhang #define MATMPISELLCUDA "mpisellcuda" 122a3b2e22bSHong Zhang #define MATDUMMY "dummy" 123cd929ea3SAlp Dener #define MATLMVM "lmvm" 12478e4361aSAlp Dener #define MATLMVMDFP "lmvmdfp" 12578e4361aSAlp Dener #define MATLMVMBFGS "lmvmbfgs" 12678e4361aSAlp Dener #define MATLMVMSR1 "lmvmsr1" 127864588a7SAlp Dener #define MATLMVMBROYDEN "lmvmbroyden" 128864588a7SAlp Dener #define MATLMVMBADBROYDEN "lmvmbadbroyden" 129864588a7SAlp Dener #define MATLMVMSYMBROYDEN "lmvmsymbroyden" 130864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN "lmvmsymbadbroyden" 131864588a7SAlp Dener #define MATLMVMDIAGBROYDEN "lmvmdiagbroyden" 1323423f386SBarry Smith #define MATCONSTANTDIAGONAL "constantdiagonal" 133345a4b08SToby Isaac #define MATDIAGONAL "diagonal" 134c7a4214aSPierre Jolivet #define MATHTOOL "htool" 13553022affSStefano Zampini #define MATH2OPUS "h2opus" 136773941d6SBarry Smith 13776bdecfbSBarry Smith /*J 13816a05f60SBarry Smith MatSolverType - String with the name of a PETSc factorization based matrix solver type. 1399989ab13SBarry Smith 140c2b89b5dSBarry Smith For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc 1419989ab13SBarry Smith 1429989ab13SBarry Smith Level: beginner 1439989ab13SBarry Smith 1442ef1f0ffSBarry Smith Note: 14516a05f60SBarry Smith `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as 14616a05f60SBarry Smith a ./configure option to install them 147c7ccbb75SBarry Smith 1481cc06b55SBarry Smith .seealso: [](sec_matfactor), [](ch_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()` 14976bdecfbSBarry Smith J*/ 150ea799195SBarry Smith typedef const char *MatSolverType; 1512692d6eeSBarry Smith #define MATSOLVERSUPERLU "superlu" 1522692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST "superlu_dist" 15308f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK "strumpack" 1542692d6eeSBarry Smith #define MATSOLVERUMFPACK "umfpack" 15520db9a53SJed Brown #define MATSOLVERCHOLMOD "cholmod" 156d89f5e7aSBarry Smith #define MATSOLVERKLU "klu" 157d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL "elemental" 158d24d4204SJose E. Roman #define MATSOLVERSCALAPACK "scalapack" 1592692d6eeSBarry Smith #define MATSOLVERESSL "essl" 1602692d6eeSBarry Smith #define MATSOLVERLUSOL "lusol" 1612692d6eeSBarry Smith #define MATSOLVERMUMPS "mumps" 162d615f992SSatish Balay #define MATSOLVERMKL_PARDISO "mkl_pardiso" 163d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO "mkl_cpardiso" 1642692d6eeSBarry Smith #define MATSOLVERPASTIX "pastix" 1652692d6eeSBarry Smith #define MATSOLVERMATLAB "matlab" 1662692d6eeSBarry Smith #define MATSOLVERPETSC "petsc" 1672692d6eeSBarry Smith #define MATSOLVERBAS "bas" 1689ae82921SPaul Mullowney #define MATSOLVERCUSPARSE "cusparse" 169bfc799aaSStefano Zampini #define MATSOLVERCUDA "cuda" 17047d993e7Ssuyashtn #define MATSOLVERHIPSPARSE "hipsparse" 17147d993e7Ssuyashtn #define MATSOLVERHIP "hip" 172930e68a5SMark Adams #define MATSOLVERKOKKOS "kokkos" 173a2fc1e05SToby Isaac #define MATSOLVERSPQR "spqr" 174c0cdd4a1SDahai Guo 175b24902e0SBarry Smith /*E 176b24902e0SBarry Smith MatFactorType - indicates what type of factorization is requested 177b24902e0SBarry Smith 1782ef1f0ffSBarry Smith Values: 1792ef1f0ffSBarry Smith + `MAT_FACTOR_LU` - LU factorization 1802ef1f0ffSBarry Smith . `MAT_FACTOR_CHOLESKY` - Cholesky factorization 1812ef1f0ffSBarry Smith . `MAT_FACTOR_ILU` - ILU factorization 1822ef1f0ffSBarry Smith . `MAT_FACTOR_ICC` - incomplete Cholesky factorization 1832ef1f0ffSBarry Smith . `MAT_FACTOR_ILUDT` - ILU factorization with drop tolerance 1842ef1f0ffSBarry Smith - `MAT_FACTOR_QR` - QR factorization 185b24902e0SBarry Smith 18616a05f60SBarry Smith Level: beginner 18716a05f60SBarry Smith 1881cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()` 189b24902e0SBarry Smith E*/ 1909371c9d4SSatish Balay typedef enum { 1919371c9d4SSatish Balay MAT_FACTOR_NONE, 1929371c9d4SSatish Balay MAT_FACTOR_LU, 1939371c9d4SSatish Balay MAT_FACTOR_CHOLESKY, 1949371c9d4SSatish Balay MAT_FACTOR_ILU, 1959371c9d4SSatish Balay MAT_FACTOR_ICC, 1969371c9d4SSatish Balay MAT_FACTOR_ILUDT, 1979371c9d4SSatish Balay MAT_FACTOR_QR, 1989371c9d4SSatish Balay MAT_FACTOR_NUM_TYPES 1999371c9d4SSatish Balay } MatFactorType; 200014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[]; 201e92e720dSBarry Smith 202ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *); 203ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *); 204f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *); 205edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 15, 0, "MatFactorGetCanUseOrdering()", ) static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b) 206d71ae5a4SJacob Faibussowitsch { 2079371c9d4SSatish Balay return MatFactorGetCanUseOrdering(A, b); 2089371c9d4SSatish Balay } 209ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *); 210014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *); 2117abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType); 2122430ea28SJose E. Roman PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatSolverFunction)(Mat, MatFactorType, Mat *); 2132430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFunction); 2142430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFunction *); 215edd03b47SJacob Faibussowitsch typedef MatSolverType MatSolverPackage PETSC_DEPRECATED_TYPEDEF(3, 9, 0, "MatSolverType", ); 216edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeRegister()", ) static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFunction f) 217d71ae5a4SJacob Faibussowitsch { 2189371c9d4SSatish Balay return MatSolverTypeRegister(stype, mtype, ftype, f); 2199371c9d4SSatish Balay } 220edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeGet()", ) static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFunction *f) 221d71ae5a4SJacob Faibussowitsch { 2229371c9d4SSatish Balay return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f); 2239371c9d4SSatish Balay } 2249989ab13SBarry Smith 2254222ddf1SHong Zhang /*E 2264222ddf1SHong Zhang MatProductType - indicates what type of matrix product is requested 2274222ddf1SHong Zhang 2282ef1f0ffSBarry Smith Values: 2292ef1f0ffSBarry Smith + `MATPRODUCT_AB` - product of two matrices 2302ef1f0ffSBarry Smith . `MATPRODUCT_AtB` - product of the transpose of a given matrix with a matrix 2312ef1f0ffSBarry Smith . `MATPRODUCT_ABt` - product of a matrix with the transpose of another given matrix 2322ef1f0ffSBarry Smith . `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself 2332ef1f0ffSBarry Smith . `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix 2342ef1f0ffSBarry Smith - `MATPRODUCT_ABC` - the product of three matrices 2352ef1f0ffSBarry Smith 23616a05f60SBarry Smith Level: beginner 23716a05f60SBarry Smith 2381cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatProductSetType()` 2394222ddf1SHong Zhang E*/ 2409371c9d4SSatish Balay typedef enum { 2419371c9d4SSatish Balay MATPRODUCT_UNSPECIFIED = 0, 2429371c9d4SSatish Balay MATPRODUCT_AB, 2439371c9d4SSatish Balay MATPRODUCT_AtB, 2449371c9d4SSatish Balay MATPRODUCT_ABt, 2459371c9d4SSatish Balay MATPRODUCT_PtAP, 2469371c9d4SSatish Balay MATPRODUCT_RARt, 2479371c9d4SSatish Balay MATPRODUCT_ABC 2489371c9d4SSatish Balay } MatProductType; 249544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[]; 2504222ddf1SHong Zhang 2514222ddf1SHong Zhang /*J 2524222ddf1SHong Zhang MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation 2534222ddf1SHong Zhang 2544222ddf1SHong Zhang Level: beginner 2554222ddf1SHong Zhang 2561cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType` 2574222ddf1SHong Zhang J*/ 2584222ddf1SHong Zhang typedef const char *MatProductAlgorithm; 2593e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT "default" 2603e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED "sorted" 2613e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE "scalable" 2623e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST "scalable_fast" 2633e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP "heap" 2643e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP "btheap" 2653e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED "llcondensed" 2663e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE "rowmerge" 2673e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT "outerproduct" 2683e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB "at*b" 2693e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP "rap" 2703e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE "nonscalable" 2713e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI "seqmpi" 2723e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND "backend" 2733e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING "overlapping" 2743e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED "merged" 2753e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE "allatonce" 2763e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged" 2773e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV "allgatherv" 2783e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC "cyclic" 2793e662e0bSHong Zhang #if defined(PETSC_HAVE_HYPRE) 2803e662e0bSHong Zhang #define MATPRODUCTALGORITHMHYPRE "hypre" 2813e662e0bSHong Zhang #endif 2824222ddf1SHong Zhang 2834222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *); 2844222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat); 2854222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType); 2864222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm); 2874222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal); 2884222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat); 2894222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat); 2904222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat); 2914222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat); 2924417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat); 2936718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer); 294c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *); 295c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *); 2964222ddf1SHong Zhang 297c06d978dSMatthew Knepley /* Logging support */ 2980700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */ 299014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID; 300335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID; 301014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID; 302014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID; 303014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID; 304014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID; 305014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID; 306014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID; 307c06d978dSMatthew Knepley 308ceb03754SKris Buschelman /*E 3092ef1f0ffSBarry Smith MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions 310cf37664fSBarry Smith are to be reused to store the new matrix values. 311cf37664fSBarry Smith 3122ef1f0ffSBarry Smith Values: 3132ef1f0ffSBarry Smith + `MAT_INITIAL_MATRIX` - create a new matrix 3142ef1f0ffSBarry Smith . `MAT_REUSE_MATRIX` - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX` 3152ef1f0ffSBarry Smith . `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions) 3162ef1f0ffSBarry Smith - `MAT_IGNORE_MATRIX` - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions) 317ceb03754SKris Buschelman 318ceb03754SKris Buschelman Level: beginner 319ceb03754SKris Buschelman 3201cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()` 321ceb03754SKris Buschelman E*/ 3229371c9d4SSatish Balay typedef enum { 3239371c9d4SSatish Balay MAT_INITIAL_MATRIX, 3249371c9d4SSatish Balay MAT_REUSE_MATRIX, 3259371c9d4SSatish Balay MAT_IGNORE_MATRIX, 3269371c9d4SSatish Balay MAT_INPLACE_MATRIX 3279371c9d4SSatish Balay } MatReuse; 328ceb03754SKris Buschelman 3295494a064SHong Zhang /*E 3302ef1f0ffSBarry Smith MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()` 3312ef1f0ffSBarry Smith include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`. 3325494a064SHong Zhang 3332ef1f0ffSBarry Smith Level: developer 3345494a064SHong Zhang 3352ef1f0ffSBarry Smith Values: 3362ef1f0ffSBarry Smith + `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values 3372ef1f0ffSBarry Smith - `MAT_GET_VALUES` - copy the matrix values 3382ef1f0ffSBarry Smith 3392ef1f0ffSBarry Smith Developer Note: 3402ef1f0ffSBarry Smith Why is not just a boolean used for this information? 3412ef1f0ffSBarry Smith 3421cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()` 3435494a064SHong Zhang E*/ 3449371c9d4SSatish Balay typedef enum { 3459371c9d4SSatish Balay MAT_DO_NOT_GET_VALUES, 3469371c9d4SSatish Balay MAT_GET_VALUES 3479371c9d4SSatish Balay } MatCreateSubMatrixOption; 3485494a064SHong Zhang 349607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void); 350*4bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatFinalizePackage(void); 351c06d978dSMatthew Knepley 352014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *); 35377433607SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFromOptions(MPI_Comm, const char *, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 354014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt); 35519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType); 3560d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *); 3570d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType); 358014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat); 359fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]); 360bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat)); 36123bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]); 362014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]); 36326cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]); 36426cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]); 365014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]); 366014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]); 36784d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool); 368f69a0ea3SMatthew Knepley 369140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList; 370140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList; 371140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList; 37228988994SBarry Smith 3733b224e63SBarry Smith /*E 374aa6c7ce3SBarry Smith MatStructure - Indicates if two matrices have the same nonzero structure 3753b224e63SBarry Smith 3762ef1f0ffSBarry Smith Values: 3772ef1f0ffSBarry Smith + `SAME_NONZERO_PATTERN` - the two matrices have identical nonzero patterns 3782ef1f0ffSBarry Smith . `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns 3792ef1f0ffSBarry Smith . `SUBSET_NONZERO_PATTERN` - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix 3802ef1f0ffSBarry Smith - `UNKNOWN_NONZERO_PATTERN` - there is no known relationship between the nonzero patterns. In this case the implementations 3812ef1f0ffSBarry Smith may try to detect a relationship to optimize the operation 382531d0c6aSBarry Smith 38316a05f60SBarry Smith Level: beginner 38416a05f60SBarry Smith 3851cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()` 3863b224e63SBarry Smith E*/ 3879371c9d4SSatish Balay typedef enum { 3889371c9d4SSatish Balay DIFFERENT_NONZERO_PATTERN, 3899371c9d4SSatish Balay SUBSET_NONZERO_PATTERN, 3909371c9d4SSatish Balay SAME_NONZERO_PATTERN, 3919371c9d4SSatish Balay UNKNOWN_NONZERO_PATTERN 3929371c9d4SSatish Balay } MatStructure; 393d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[]; 3943b224e63SBarry Smith 3959779e05dSSatish Balay #if defined PETSC_HAVE_MKL_SPARSE 396ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 397ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 39880095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 399ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 40080095d54SIrina Sokolova #endif 401cd929ea3SAlp Dener 402*4bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 403*4bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 404*4bf303faSJacob Faibussowitsch 405d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 406d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 407d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]); 408d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 40907e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *); 41007e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *); 41107e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *); 41207e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt); 413b921024eSHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *); 41480095d54SIrina Sokolova 415*4bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 416*4bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 417*4bf303faSJacob Faibussowitsch 418014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 419014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 420014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 421014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 422014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 4238f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 4246a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]); 425014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *); 4263b00a383SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *); 4273b00a383SHong Zhang 428014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 429014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 430014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 4317e8381f9SStefano Zampini 432e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]); 43382a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]); 4347e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode); 435d21a29f3SJed Brown 436014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *); 437014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 438d21a29f3SJed Brown 439014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 440014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 44138f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 442014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 4434cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]); 444dfb205c3SBarry Smith 445014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *); 446c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *); 447014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *); 448c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *); 449986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *); 450267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *); 451bcf2175cSMatthew Knepley PETSC_EXTERN PetscErrorCode MatLRCSetMats(Mat, Mat, Mat, Vec, Mat); 452c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *); 453014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 454014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 455c0cdd4a1SDahai Guo 456014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *); 457014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter); 458014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *); 459014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *); 460014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat); 461014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat); 4629371c9d4SSatish Balay typedef enum { 4639371c9d4SSatish Balay MAT_COMPOSITE_MERGE_RIGHT, 4649371c9d4SSatish Balay MAT_COMPOSITE_MERGE_LEFT 4659371c9d4SSatish Balay } MatCompositeMergeType; 4668c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType); 467014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *); 4689371c9d4SSatish Balay typedef enum { 4699371c9d4SSatish Balay MAT_COMPOSITE_ADDITIVE, 4709371c9d4SSatish Balay MAT_COMPOSITE_MULTIPLICATIVE 4719371c9d4SSatish Balay } MatCompositeType; 472014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType); 4736dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *); 4743b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure); 4753b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *); 4766d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *); 4778b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *); 47803049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *); 4796d7c1e57SBarry Smith 48019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *); 481014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *); 482dedccee8SHong Zhang 483014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *); 4848060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *); 485d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *); 48606511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *); 487fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *); 48865f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *); 48954e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *); 49054e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS); 491014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *); 4923423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *); 493345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatCreateDiagonal(Vec, Mat *); 494345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetDiagonal(Mat, Vec *); 495345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreDiagonal(Mat, Vec *); 496345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetInverseDiagonal(Mat, Vec *); 497345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreInverseDiagonal(Mat, Vec *); 4981472f72bSBarry Smith 499978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE) 500d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 501978814f1SStefano Zampini #endif 502978814f1SStefano Zampini 503014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]); 504ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]); 5051d6018f0SLisandro Dalcin 506846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat); 507014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat); 508014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *); 509e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *); 51021c89e3eSBarry Smith 511014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat); 512014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat); 513014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat); 514014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *); 515014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *); 516713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **); 5170da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *); 518479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat); 5198a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *); 52020c04d79SPierre Jolivet PETSC_EXTERN PetscErrorCode MatComputeVariableBlockEnvelope(Mat); 52199cafbc1SBarry Smith 522014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 5238a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode); 524014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 525014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]); 526014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]); 527014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]); 52873a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom); 52984cb2905SBarry Smith 5302ef4de8bSBarry Smith /*S 5312ef1f0ffSBarry Smith MatStencil - Data structure (C struct) for storing information about rows and 5322ef1f0ffSBarry Smith columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()` 53362ef0227SBarry Smith 5342ef1f0ffSBarry Smith Level: beginner 5352ef1f0ffSBarry Smith 5362ef1f0ffSBarry Smith Notes: 53762ef0227SBarry Smith The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored). 53887497f52SBarry Smith The c represents the the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored. 53962ef0227SBarry Smith 54087497f52SBarry Smith For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`. 541be479b30SJed Brown 5422ef1f0ffSBarry Smith For staggered grids, see `DMStagStencil` 5432ef4de8bSBarry Smith 5442ef1f0ffSBarry Smith Fortran Note: 5452ef1f0ffSBarry Smith See `MatSetValuesStencil()` for details. 5462ef4de8bSBarry Smith 5471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`, 5482ef1f0ffSBarry Smith `DMStagStencil` 5492ef4de8bSBarry Smith S*/ 550435da068SBarry Smith typedef struct { 551c1ac3661SBarry Smith PetscInt k, j, i, c; 552435da068SBarry Smith } MatStencil; 5532ef4de8bSBarry Smith 554014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 555014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 556014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt); 557435da068SBarry Smith 558d91e6319SBarry Smith /*E 5592ef1f0ffSBarry Smith MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use 560d91e6319SBarry Smith 5612ef1f0ffSBarry Smith Values: 5622ef1f0ffSBarry Smith + `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix 5632ef1f0ffSBarry Smith - `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted 5642ef1f0ffSBarry Smith 56516a05f60SBarry Smith Level: beginner 56616a05f60SBarry Smith 5671cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()` 568d91e6319SBarry Smith E*/ 5699371c9d4SSatish Balay typedef enum { 5709371c9d4SSatish Balay MAT_FLUSH_ASSEMBLY = 1, 5719371c9d4SSatish Balay MAT_FINAL_ASSEMBLY = 0 5729371c9d4SSatish Balay } MatAssemblyType; 573014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType); 574014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType); 575014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *); 5764f9c727eSBarry Smith 577d91e6319SBarry Smith /*E 5782ef1f0ffSBarry Smith MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage 579d91e6319SBarry Smith 580d91e6319SBarry Smith Level: beginner 581d91e6319SBarry Smith 5822ef1f0ffSBarry Smith Note: 5832ef1f0ffSBarry Smith See `MatSetOption()` for the use of the options 5842ef1f0ffSBarry Smith 5852ef1f0ffSBarry Smith Developer Note: 58695452b02SPatrick Sanan Entries that are negative need not be called collectively by all processes. 587382164b0SBarry Smith 5881cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetOption()` 589d91e6319SBarry Smith E*/ 5909371c9d4SSatish Balay typedef enum { 5919371c9d4SSatish Balay MAT_OPTION_MIN = -3, 592c5e4d11fSDmitry Karpeev MAT_UNUSED_NONZERO_LOCATION_ERR = -2, 59392d4d306SBarry Smith MAT_ROW_ORIENTED = -1, 594382164b0SBarry Smith MAT_SYMMETRIC = 1, 595382164b0SBarry Smith MAT_STRUCTURALLY_SYMMETRIC = 2, 5968c78258cSHong Zhang MAT_FORCE_DIAGONAL_ENTRIES = 3, 597382164b0SBarry Smith MAT_IGNORE_OFF_PROC_ENTRIES = 4, 598382164b0SBarry Smith MAT_USE_HASH_TABLE = 5, 599382164b0SBarry Smith MAT_KEEP_NONZERO_PATTERN = 6, 600382164b0SBarry Smith MAT_IGNORE_ZERO_ENTRIES = 7, 601382164b0SBarry Smith MAT_USE_INODES = 8, 602382164b0SBarry Smith MAT_HERMITIAN = 9, 603382164b0SBarry Smith MAT_SYMMETRY_ETERNAL = 10, 604c5e4d11fSDmitry Karpeev MAT_NEW_NONZERO_LOCATION_ERR = 11, 605382164b0SBarry Smith MAT_IGNORE_LOWER_TRIANGULAR = 12, 606382164b0SBarry Smith MAT_ERROR_LOWER_TRIANGULAR = 13, 607382164b0SBarry Smith MAT_GETROW_UPPERTRIANGULAR = 14, 608382164b0SBarry Smith MAT_SPD = 15, 60992d4d306SBarry Smith MAT_NO_OFF_PROC_ZERO_ROWS = 16, 61092d4d306SBarry Smith MAT_NO_OFF_PROC_ENTRIES = 17, 61192d4d306SBarry Smith MAT_NEW_NONZERO_LOCATIONS = 18, 612c5e4d11fSDmitry Karpeev MAT_NEW_NONZERO_ALLOCATION_ERR = 19, 613c5e4d11fSDmitry Karpeev MAT_SUBSET_OFF_PROC_ENTRIES = 20, 614c10200c1SHong Zhang MAT_SUBMAT_SINGLEIS = 21, 615957cac9fSHong Zhang MAT_STRUCTURE_ONLY = 22, 616071fcb05SBarry Smith MAT_SORTED_FULL = 23, 6171a2c6b5cSJunchao Zhang MAT_FORM_EXPLICIT_TRANSPOSE = 24, 618b94d7dedSBarry Smith MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25, 619b94d7dedSBarry Smith MAT_SPD_ETERNAL = 26, 6209371c9d4SSatish Balay MAT_OPTION_MAX = 27 6219371c9d4SSatish Balay } MatOption; 622e057df02SPaul Mullowney 6230f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions; 624014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOption(Mat, MatOption, PetscBool); 6257d68702bSBarry Smith PETSC_EXTERN PetscErrorCode MatGetOption(Mat, MatOption, PetscBool *); 626856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode MatPropagateSymmetryOptions(Mat, Mat); 62719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetType(Mat, MatType *); 62884cb2905SBarry Smith 629014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 630014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 631014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 632014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowUpperTriangular(Mat); 633014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowUpperTriangular(Mat); 634014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnVector(Mat, Vec, PetscInt); 6358c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetArray(Mat, PetscScalar *[]); 6368f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]); 637d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]); 6388c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArray(Mat, PetscScalar *[]); 6398f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]); 640d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]); 64121e72a00SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *); 642bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 6434099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetType(Mat, MatType); 644ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatSeqAIJKron(Mat, Mat, MatReuse, Mat *); 645388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *)); 6464099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList; 647cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJGetArray(Mat, PetscScalar *[]); 648cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJRestoreArray(Mat, PetscScalar *[]); 6498397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJGetArray(Mat, PetscScalar *[]); 6508397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]); 6518c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArray(Mat, PetscScalar *[]); 6528c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArray(Mat, PetscScalar *[]); 653d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDensePlaceArray(Mat, const PetscScalar[]); 654d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseReplaceArray(Mat, const PetscScalar[]); 655d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseResetArray(Mat); 6568572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArrayRead(Mat, const PetscScalar *[]); 6578572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayRead(Mat, const PetscScalar *[]); 6586947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetArrayWrite(Mat, PetscScalar *[]); 6596947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWrite(Mat, PetscScalar *[]); 660cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *); 661cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]); 662cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *); 663cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]); 664cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *); 665cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]); 666014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSize(Mat, PetscInt *); 667014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSize(Mat, PetscInt); 668014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSizes(Mat, PetscInt *, PetscInt *); 669014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizes(Mat, PetscInt, PetscInt); 67033d57670SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizesFromMats(Mat, Mat, Mat); 6710da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetVariableBlockSizes(Mat, PetscInt, PetscInt *); 6720da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt **); 6730da83c2eSBarry Smith 67486aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]); 67586aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]); 6766947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *); 6776947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *); 6786947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *); 6796947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *); 6806947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *); 6816947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *); 682a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 6835ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *); 6841620fd73SBarry Smith 685014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec); 686014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec); 687014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec); 688014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec); 689014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec); 690014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *); 691014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *); 692014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec); 693014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec); 694014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat); 695bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat); 696eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat); 697f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec); 698f5edf698SHong Zhang 699d91e6319SBarry Smith /*E 700d91e6319SBarry Smith MatDuplicateOption - Indicates if a duplicated sparse matrix should have 701d91e6319SBarry Smith its numerical values copied over or just its nonzero structure. 702d91e6319SBarry Smith 7032ef1f0ffSBarry Smith Values: 7042ef1f0ffSBarry Smith + `MAT_DO_NOT_COPY_VALUES` - Create a matrix using the same nonzero pattern as the original matrix, 7052ef1f0ffSBarry Smith with zeros for the numerical values 7062ef1f0ffSBarry Smith . `MAT_COPY_VALUES` - Create a matrix with the same nonzero pattern as the original matrix 7072ef1f0ffSBarry Smith and with the same numerical values. 7082ef1f0ffSBarry Smith - `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix 7092ef1f0ffSBarry Smith and does not copy it, using zeros for the numerical values. The parent and 7102ef1f0ffSBarry Smith child matrices will share their index (i and j) arrays, and you cannot 7112ef1f0ffSBarry Smith insert new nonzero entries into either matrix 7120018da39SRichard Tran Mills 71316a05f60SBarry Smith Level: beginner 71416a05f60SBarry Smith 71587497f52SBarry Smith Note: 71687497f52SBarry Smith Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in 71787497f52SBarry Smith this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified. 71870dcbbb9SBarry Smith 7191cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicate()` 720d91e6319SBarry Smith E*/ 7219371c9d4SSatish Balay typedef enum { 7229371c9d4SSatish Balay MAT_DO_NOT_COPY_VALUES, 7239371c9d4SSatish Balay MAT_COPY_VALUES, 7249371c9d4SSatish Balay MAT_SHARE_NONZERO_PATTERN 7259371c9d4SSatish Balay } MatDuplicateOption; 7262e8a6d31SBarry Smith 72719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *); 728014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *); 72994a9d846SBarry Smith 730014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure); 731014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer); 732014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *); 733014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *); 734014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *); 735014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *); 736014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *); 737b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *); 738b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *); 739014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *); 740014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer); 7417b80b807SBarry Smith 7421a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7431a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7441a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7451a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 746d4fbbf0eSBarry Smith 747d91e6319SBarry Smith /*S 74887497f52SBarry Smith MatInfo - Context of matrix information, used with `MatGetInfo()` 749d91e6319SBarry Smith 750d91e6319SBarry Smith Level: intermediate 751d91e6319SBarry Smith 7522ef1f0ffSBarry Smith Fortran Note: 7532ef1f0ffSBarry Smith Information is stored as a double-precision array of dimension `MAT_INFO_SIZE` 7542ef1f0ffSBarry Smith 7551cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetInfo()`, `MatInfoType` 756d91e6319SBarry Smith S*/ 7574e220ebcSLois Curfman McInnes typedef struct { 758b0a32e0cSBarry Smith PetscLogDouble block_size; /* block size */ 759b0a32e0cSBarry Smith PetscLogDouble nz_allocated, nz_used, nz_unneeded; /* number of nonzeros */ 760b0a32e0cSBarry Smith PetscLogDouble memory; /* memory allocated */ 761b0a32e0cSBarry Smith PetscLogDouble assemblies; /* number of matrix assemblies called */ 762b0a32e0cSBarry Smith PetscLogDouble mallocs; /* number of mallocs during MatSetValues() */ 763b0a32e0cSBarry Smith PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */ 764b0a32e0cSBarry Smith PetscLogDouble factor_mallocs; /* number of mallocs during factorization */ 7654e220ebcSLois Curfman McInnes } MatInfo; 7664e220ebcSLois Curfman McInnes 767d9274352SBarry Smith /*E 768d9274352SBarry Smith MatInfoType - Indicates if you want information about the local part of the matrix, 769d9274352SBarry Smith the entire parallel matrix or the maximum over all the local parts. 770d9274352SBarry Smith 7712ef1f0ffSBarry Smith Values: 7722ef1f0ffSBarry Smith + `MAT_LOCAL` - values for each MPI process part of the matrix 7732ef1f0ffSBarry Smith . `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes 7742ef1f0ffSBarry Smith - `MAT_GLOBAL_SUM` - sum of each value over all MPI processes 775d9274352SBarry Smith 77616a05f60SBarry Smith Level: beginner 77716a05f60SBarry Smith 7781cc06b55SBarry Smith .seealso: [](ch_matrices), `MatGetInfo()`, `MatInfo` 779d9274352SBarry Smith E*/ 7809371c9d4SSatish Balay typedef enum { 7819371c9d4SSatish Balay MAT_LOCAL = 1, 7829371c9d4SSatish Balay MAT_GLOBAL_MAX = 2, 7839371c9d4SSatish Balay MAT_GLOBAL_SUM = 3 7849371c9d4SSatish Balay } MatInfoType; 785014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *); 786014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec); 787014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]); 788014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]); 789014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]); 790014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]); 791014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec); 792014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *); 7937fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *); 7947fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat); 795014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *); 796014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *); 797014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec); 798014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode); 799a52676ecSHong Zhang 800014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *); 801014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *); 802014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *); 803014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 804014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 805e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 806e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 807a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 808a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 809cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 8104222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 811447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 81286919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *); 8137b80b807SBarry Smith 814014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *); 815014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *); 816857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *); 817857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *); 818857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *); 819857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *); 820857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *); 821857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *); 822857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *); 823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat); 8241b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat); 825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec); 827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 830014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec); 8317b80b807SBarry Smith 832014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *); 833014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *); 834014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *); 835014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **); 836014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *); 837014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **); 838566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *); 8395ef9f2a5SBarry Smith 8407dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 841edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrices()", ) static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 842d71ae5a4SJacob Faibussowitsch { 8439371c9d4SSatish Balay return MatCreateSubMatrices(mat, n, irow, icol, scall, submat); 8449371c9d4SSatish Balay } 8457dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 846edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatricesMPI()", ) static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 847d71ae5a4SJacob Faibussowitsch { 8489371c9d4SSatish Balay return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat); 8499371c9d4SSatish Balay } 850014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]); 851df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]); 8527dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *); 853edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrix()", ) static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat) 854d71ae5a4SJacob Faibussowitsch { 8559371c9d4SSatish Balay return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat); 8569371c9d4SSatish Balay } 857014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *); 858014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *); 859014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *); 860014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *); 8617b80b807SBarry Smith 862014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *); 863014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *); 864014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat); 865014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *); 8668a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *); 867014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *); 868ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *); 869f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *); 870014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *); 871014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]); 8728efafbd8SBarry Smith 873014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt); 874aa1e27eaSFande Kong PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov); 875d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool); 8767b80b807SBarry Smith 877014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 87822440eb1SKris Buschelman 8797bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 8802df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 8817bab7c10SHong Zhang 882014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *); 883014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *); 88422440eb1SKris Buschelman 885014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 886014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *); 887bc011b1eSHong Zhang 888014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure); 889014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure); 8901c741599SHong Zhang 891014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar); 892014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar); 8937b80b807SBarry Smith 894014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping); 895014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 896a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *); 89781fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout); 898014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 899014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 900014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 901014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 902e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 903014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 904014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 905052efed2SBarry Smith 906014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt); 907014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *); 90890f02eecSBarry Smith 909014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec); 910014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec); 911014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec); 91230b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *); 91330b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *); 91430b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *); 9152a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *); 916edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 6, 0, "MatCreateVecs()", ) static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y) 917d71ae5a4SJacob Faibussowitsch { 9189371c9d4SSatish Balay return MatCreateVecs(mat, x, y); 9199371c9d4SSatish Balay } 92053cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *); 921014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *); 922014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *); 9233a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *); 9249c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *); 925bd481603SBarry Smith 926c8d6c325SJunchao Zhang /*@C 9271620fd73SBarry Smith MatSetValue - Set a single entry into a matrix. 9281620fd73SBarry Smith 929e1c5b2e2SJose E. Roman This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()` 930e1c5b2e2SJose E. Roman MUST be called after all calls to `MatSetValue()` have been completed. 9311620fd73SBarry Smith 932e1c5b2e2SJose E. Roman Not Collective 933a9834a7dSSatish Balay 9341620fd73SBarry Smith Input Parameters: 935c8d6c325SJunchao Zhang + mat - the matrix 93616a05f60SBarry Smith . i - the row location of the entry 93716a05f60SBarry Smith . j - the column location of the entry 93816a05f60SBarry Smith . va - the value to insert 93987497f52SBarry Smith - mode - either `INSERT_VALUES` or `ADD_VALUES` 9401620fd73SBarry Smith 9411620fd73SBarry Smith Level: beginner 9421620fd73SBarry Smith 9432ef1f0ffSBarry Smith Note: 9442ef1f0ffSBarry Smith For efficiency one should use `MatSetValues()` and set several values simultaneously. 9452ef1f0ffSBarry Smith 9461cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `InsertMode`, `MatGetValue()`, `MatSetValues()`, 9472ef1f0ffSBarry Smith `MatSetValueLocal()`, `MatSetValuesLocal()` 948c8d6c325SJunchao Zhang @*/ 949c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValue(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 950d71ae5a4SJacob Faibussowitsch { 951c8d6c325SJunchao Zhang return MatSetValues(mat, 1, &i, 1, &j, &va, mode); 9529371c9d4SSatish Balay } 9531620fd73SBarry Smith 954e5e5a7b5SPatrick Sanan /*@C 955e5e5a7b5SPatrick Sanan MatGetValue - Gets a single value from a matrix 9561620fd73SBarry Smith 957e5e5a7b5SPatrick Sanan Not Collective; can only return a value owned by the given process 958e5e5a7b5SPatrick Sanan 959e5e5a7b5SPatrick Sanan Input Parameters: 960e5e5a7b5SPatrick Sanan + mat - the matrix 961e5e5a7b5SPatrick Sanan . row - the row location of the entry 962e5e5a7b5SPatrick Sanan - col - the column location of the entry 963e5e5a7b5SPatrick Sanan 964e5e5a7b5SPatrick Sanan Output Parameter: 965e5e5a7b5SPatrick Sanan . va - the value 966e5e5a7b5SPatrick Sanan 9672ef1f0ffSBarry Smith Level: advanced 9682ef1f0ffSBarry Smith 969e5e5a7b5SPatrick Sanan Notes: 9702ef1f0ffSBarry Smith The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd` before this call 9712ef1f0ffSBarry Smith 97287497f52SBarry Smith For efficiency one should use `MatGetValues()` and get several values simultaneously. 973e5e5a7b5SPatrick Sanan 97487497f52SBarry Smith See notes for `MatGetValues()`. 975e5e5a7b5SPatrick Sanan 9761cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()` 977e5e5a7b5SPatrick Sanan @*/ 978d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va) 979d71ae5a4SJacob Faibussowitsch { 9809371c9d4SSatish Balay return MatGetValues(mat, 1, &row, 1, &col, va); 9819371c9d4SSatish Balay } 982e5e5a7b5SPatrick Sanan 983c8d6c325SJunchao Zhang /*@C 9842ef1f0ffSBarry Smith MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes. 985e5e5a7b5SPatrick Sanan 986e5e5a7b5SPatrick Sanan Not Collective 987e5e5a7b5SPatrick Sanan 988e5e5a7b5SPatrick Sanan Input Parameters: 989c8d6c325SJunchao Zhang + mat - the matrix 99016a05f60SBarry Smith . i - the row location of the entry 99116a05f60SBarry Smith . j - the column location of the entry 99216a05f60SBarry Smith . va - the value to insert 99387497f52SBarry Smith - mode - either `INSERT_VALUES` or `ADD_VALUES` 994e5e5a7b5SPatrick Sanan 9952ef1f0ffSBarry Smith Level: intermediate 9962ef1f0ffSBarry Smith 997e5e5a7b5SPatrick Sanan Notes: 99887497f52SBarry Smith For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously. 999e5e5a7b5SPatrick Sanan 100087497f52SBarry Smith See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used. 1001e5e5a7b5SPatrick Sanan 10021cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSetValue()`, `MatSetValuesLocal()` 1003c8d6c325SJunchao Zhang @*/ 1004c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValueLocal(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 1005d71ae5a4SJacob Faibussowitsch { 1006c8d6c325SJunchao Zhang return MatSetValuesLocal(mat, 1, &i, 1, &j, &va, mode); 10079371c9d4SSatish Balay } 10081620fd73SBarry Smith 10091620fd73SBarry Smith /*MC 1010d0609cedSBarry Smith MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per 1011bd481603SBarry Smith row in a matrix providing the data that one can use to correctly preallocate the matrix. 1012bd481603SBarry Smith 1013bd481603SBarry Smith Synopsis: 1014aaa7dc30SBarry Smith #include <petscmat.h> 1015d0609cedSBarry Smith PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz) 1016bd481603SBarry Smith 1017d083f849SBarry Smith Collective 1018bd481603SBarry Smith 1019bd481603SBarry Smith Input Parameters: 1020bd481603SBarry Smith + comm - the communicator that will share the eventually allocated matrix 1021859fcb39SBarry Smith . nrows - the number of LOCAL rows in the matrix 1022859fcb39SBarry Smith - ncols - the number of LOCAL columns in the matrix 1023bd481603SBarry Smith 1024bd481603SBarry Smith Output Parameters: 1025bd481603SBarry Smith + dnz - the array that will be passed to the matrix preallocation routines 1026a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1027bd481603SBarry Smith 10282ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1029bd481603SBarry Smith 1030bd481603SBarry Smith Notes: 10312ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 10322ef1f0ffSBarry Smith the use of this routine 10332ef1f0ffSBarry Smith 1034d0609cedSBarry Smith This is a macro that handles its own error checking, it does not return an error code. 1035d0609cedSBarry Smith 10362ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1037bd481603SBarry Smith 10382ef1f0ffSBarry Smith Developer Note: 10392ef1f0ffSBarry Smith This is a MACRO not a function because it has a leading { that is closed by `PetscPreallocateFinalize()`. 1040bd481603SBarry Smith 10411cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1042db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 1043bd481603SBarry Smith M*/ 10449371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \ 10459371c9d4SSatish Balay do { \ 10463ba16761SJacob Faibussowitsch PetscInt __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \ 10473ba16761SJacob Faibussowitsch PetscInt PETSC_UNUSED __start; \ 10489566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \ 10499566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \ 10509371c9d4SSatish Balay __start = __end - __ncols; \ 10519371c9d4SSatish Balay (void)__start; \ 10529566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \ 10535f80ce2aSJacob Faibussowitsch __rstart -= __nrows 10547c922b88SBarry Smith 1055edd03b47SJacob Faibussowitsch #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateBegin()", ) MatPreallocateBegin(__VA_ARGS__) 1056d0609cedSBarry Smith 1057bd481603SBarry Smith /*MC 1058bd481603SBarry Smith MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1059bd481603SBarry Smith inserted using a local number of the rows and columns 1060bd481603SBarry Smith 1061bd481603SBarry Smith Synopsis: 1062aaa7dc30SBarry Smith #include <petscmat.h> 1063c1ac3661SBarry Smith PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1064bd481603SBarry Smith 1065bd481603SBarry Smith Not Collective 1066bd481603SBarry Smith 1067bd481603SBarry Smith Input Parameters: 1068784ac674SJed Brown + map - the row mapping from local numbering to global numbering 1069bd481603SBarry Smith . nrows - the number of rows indicated 10701d73ed98SBarry Smith . rows - the indices of the rows 1071784ac674SJed Brown . cmap - the column mapping from local to global numbering 1072bd481603SBarry Smith . ncols - the number of columns in the matrix 1073bd481603SBarry Smith . cols - the columns indicated 1074bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1075a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1076bd481603SBarry Smith 10772ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1078bd481603SBarry Smith 1079bd481603SBarry Smith Notes: 10802ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 10812ef1f0ffSBarry Smith the use of this routine 1082bd481603SBarry Smith 10832ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1084bd481603SBarry Smith 10851cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1086db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()` 1087bd481603SBarry Smith M*/ 108894bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 10899371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1090c4f061fbSSatish Balay 1091bd481603SBarry Smith /*MC 1092c1154cd5SBarry Smith MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1093c1154cd5SBarry Smith inserted using a local number of the rows and columns. This version removes any duplicate columns in cols 1094c1154cd5SBarry Smith 1095c1154cd5SBarry Smith Synopsis: 1096c1154cd5SBarry Smith #include <petscmat.h> 1097c1154cd5SBarry Smith PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1098c1154cd5SBarry Smith 1099c1154cd5SBarry Smith Not Collective 1100c1154cd5SBarry Smith 1101c1154cd5SBarry Smith Input Parameters: 1102c1154cd5SBarry Smith + map - the row mapping from local numbering to global numbering 1103c1154cd5SBarry Smith . nrows - the number of rows indicated 1104c1154cd5SBarry Smith . rows - the indices of the rows (these values are mapped to the global values) 1105c1154cd5SBarry Smith . cmap - the column mapping from local to global numbering 1106c1154cd5SBarry Smith . ncols - the number of columns in the matrix (this value will be changed if duplicate columns are found) 1107c1154cd5SBarry Smith . cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed) 1108c1154cd5SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1109a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1110c1154cd5SBarry Smith 11112ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1112c1154cd5SBarry Smith 1113c1154cd5SBarry Smith Notes: 11142ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11152ef1f0ffSBarry Smith the use of this routine 1116c1154cd5SBarry Smith 11172ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1118c1154cd5SBarry Smith 11191cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1120db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1121c1154cd5SBarry Smith M*/ 112294bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 11239371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1124c1154cd5SBarry Smith 1125c1154cd5SBarry Smith /*MC 1126d6e23781SBarry Smith MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1127bd481603SBarry Smith inserted using a local number of the rows and columns 1128bd481603SBarry Smith 1129bd481603SBarry Smith Synopsis: 1130aaa7dc30SBarry Smith #include <petscmat.h> 1131d6e23781SBarry Smith PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1132d6e23781SBarry Smith 1133d6e23781SBarry Smith Not Collective 1134d6e23781SBarry Smith 1135d6e23781SBarry Smith Input Parameters: 1136d6e23781SBarry Smith + map - the row mapping from local numbering to global numbering 1137d6e23781SBarry Smith . nrows - the number of rows indicated 1138d6e23781SBarry Smith . rows - the indices of the rows 1139d6e23781SBarry Smith . cmap - the column mapping from local to global numbering 1140d6e23781SBarry Smith . ncols - the number of columns in the matrix 1141d6e23781SBarry Smith . cols - the columns indicated 1142d6e23781SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1143a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1144d6e23781SBarry Smith 11452ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1146d6e23781SBarry Smith 1147d6e23781SBarry Smith Notes: 11482ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11492ef1f0ffSBarry Smith the use of this routine 1150d6e23781SBarry Smith 11512ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1152d6e23781SBarry Smith 11531cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1154db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()` 1155d6e23781SBarry Smith M*/ 115694bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 11579371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1158d6e23781SBarry Smith 1159d6e23781SBarry Smith /*MC 1160d6e23781SBarry Smith MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1161d6e23781SBarry Smith inserted using a local number of the rows and columns 1162d6e23781SBarry Smith 1163d6e23781SBarry Smith Synopsis: 1164d6e23781SBarry Smith #include <petscmat.h> 1165d6e23781SBarry Smith PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1166bd481603SBarry Smith 1167bd481603SBarry Smith Not Collective 1168bd481603SBarry Smith 1169bd481603SBarry Smith Input Parameters: 1170bd481603SBarry Smith + map - the mapping between local numbering and global numbering 1171bd481603SBarry Smith . nrows - the number of rows indicated 11721d73ed98SBarry Smith . rows - the indices of the rows 1173bd481603SBarry Smith . ncols - the number of columns in the matrix 1174bd481603SBarry Smith . cols - the columns indicated 1175bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1176a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1177bd481603SBarry Smith 11782ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1179bd481603SBarry Smith 1180bd481603SBarry Smith Notes: 11812ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11822ef1f0ffSBarry Smith the use of this routine 1183bd481603SBarry Smith 11842ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1185bd481603SBarry Smith 11861cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()` 1187db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1188bd481603SBarry Smith M*/ 118994bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \ 11909371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));) 1191e83a5d19SLisandro Dalcin 1192bd481603SBarry Smith /*MC 1193bd481603SBarry Smith MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1194bd481603SBarry Smith inserted using a local number of the rows and columns 1195bd481603SBarry Smith 1196bd481603SBarry Smith Synopsis: 1197aaa7dc30SBarry Smith #include <petscmat.h> 1198c1ac3661SBarry Smith PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1199bd481603SBarry Smith 1200bd481603SBarry Smith Not Collective 1201bd481603SBarry Smith 1202bd481603SBarry Smith Input Parameters: 120364075487SBarry Smith + row - the row 1204bd481603SBarry Smith . ncols - the number of columns in the matrix 1205a50f8bf6SHong Zhang - cols - the columns indicated 1206a50f8bf6SHong Zhang 1207a50f8bf6SHong Zhang Output Parameters: 1208a50f8bf6SHong Zhang + dnz - the array that will be passed to the matrix preallocation routines 1209a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1210bd481603SBarry Smith 12112ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1212bd481603SBarry Smith 1213bd481603SBarry Smith Notes: 12142ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12152ef1f0ffSBarry Smith the use of this routine 1216bd481603SBarry Smith 12172ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1218bd481603SBarry Smith 1219d0609cedSBarry Smith This is a MACRO not a function because it uses variables declared in MatPreallocateBegin(). 12201620fd73SBarry Smith 12211cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1222db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1223bd481603SBarry Smith M*/ 12249371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \ 12259371c9d4SSatish Balay PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \ 122664075487SBarry Smith if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \ 1227a6042fd4SStefano Zampini else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 12289371c9d4SSatish Balay }) 12297c922b88SBarry Smith 1230bd481603SBarry Smith /*MC 1231d6e23781SBarry Smith MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1232bd481603SBarry Smith inserted using a local number of the rows and columns 1233bd481603SBarry Smith 1234bd481603SBarry Smith Synopsis: 1235aaa7dc30SBarry Smith #include <petscmat.h> 1236d6e23781SBarry Smith PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1237bd481603SBarry Smith 1238bd481603SBarry Smith Not Collective 1239bd481603SBarry Smith 1240bd481603SBarry Smith Input Parameters: 1241bd481603SBarry Smith + nrows - the number of rows indicated 12421d73ed98SBarry Smith . rows - the indices of the rows 1243bd481603SBarry Smith . ncols - the number of columns in the matrix 1244bd481603SBarry Smith . cols - the columns indicated 1245bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1246a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1247bd481603SBarry Smith 12482ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1249bd481603SBarry Smith 1250bd481603SBarry Smith Notes: 12512ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12522ef1f0ffSBarry Smith the use of this routine 1253bd481603SBarry Smith 12542ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1255bd481603SBarry Smith 1256d0609cedSBarry Smith This is a MACRO not a function because it uses variables declared in MatPreallocateBegin(). 12571620fd73SBarry Smith 12581cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`, 1259db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1260bd481603SBarry Smith M*/ 126194bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \ 12629371c9d4SSatish Balay PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \ 1263d3d32019SBarry Smith if (cols[__i] >= __end) onz[row - __rstart]++; \ 1264a6042fd4SStefano Zampini else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 12659371c9d4SSatish Balay }) 1266d3d32019SBarry Smith 1267bd481603SBarry Smith /*MC 1268a6042fd4SStefano Zampini MatPreallocateLocation - An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists 126916371a99SBarry Smith 127016371a99SBarry Smith Synopsis: 1271aaa7dc30SBarry Smith #include <petscmat.h> 127216371a99SBarry Smith PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz) 127316371a99SBarry Smith 127416371a99SBarry Smith Not Collective 127516371a99SBarry Smith 127616371a99SBarry Smith Input Parameters: 1277a2b725a8SWilliam Gropp + A - matrix 127816371a99SBarry Smith . row - row where values exist (must be local to this process) 127916371a99SBarry Smith . ncols - number of columns 128016371a99SBarry Smith . cols - columns with nonzeros 128116371a99SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1282a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 128316371a99SBarry Smith 12842ef1f0ffSBarry Smith Level: deprecated (since v3.19) 128516371a99SBarry Smith 128616371a99SBarry Smith Notes: 12872ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12882ef1f0ffSBarry Smith the use of this routine 128916371a99SBarry Smith 12902ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 129116371a99SBarry Smith 129216371a99SBarry Smith This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines. 129316371a99SBarry Smith 12941cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1295db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 129616371a99SBarry Smith M*/ 1297d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz)) 129816371a99SBarry Smith 129916371a99SBarry Smith /*MC 1300d0609cedSBarry Smith MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per 1301bd481603SBarry Smith row in a matrix providing the data that one can use to correctly preallocate the matrix. 1302bd481603SBarry Smith 1303bd481603SBarry Smith Synopsis: 1304aaa7dc30SBarry Smith #include <petscmat.h> 1305d0609cedSBarry Smith PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz) 1306bd481603SBarry Smith 1307d083f849SBarry Smith Collective 1308bd481603SBarry Smith 1309bd481603SBarry Smith Input Parameters: 131016371a99SBarry Smith + dnz - the array that was be passed to the matrix preallocation routines 1311a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1312bd481603SBarry Smith 13132ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1314bd481603SBarry Smith 1315bd481603SBarry Smith Notes: 13162ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 13172ef1f0ffSBarry Smith the use of this routine 1318d0609cedSBarry Smith 13192ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1320bd481603SBarry Smith 13212ef1f0ffSBarry Smith Developer Note: 1322d0609cedSBarry Smith This is a MACRO not a function because it closes the { started in MatPreallocateBegin(). 13231620fd73SBarry Smith 13241cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1325db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 1326bd481603SBarry Smith M*/ 13279371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \ 13289371c9d4SSatish Balay PetscCall(PetscFree2(dnz, onz)); \ 13299371c9d4SSatish Balay } \ 13309371c9d4SSatish Balay while (0) 1331d0609cedSBarry Smith 1332edd03b47SJacob Faibussowitsch #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateEnd()", ) MatPreallocateEnd(__VA_ARGS__) 13337c922b88SBarry Smith 13347b80b807SBarry Smith /* Routines unique to particular data structures */ 1335014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *); 1336698d4c6aSKris Buschelman 1337014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *); 1338014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *); 1339698d4c6aSKris Buschelman 1340014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]); 1341014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]); 1342014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1343014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1344014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1345014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool); 13467b80b807SBarry Smith 1347a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4 1348a96a251dSBarry Smith 1349014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1350014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1351014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]); 135219b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt); 1353273d9f13SBarry Smith 1354014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1355014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1356014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1357014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1358014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1359014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1360014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1361014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]); 1362b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *); 1363252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *); 1364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]); 1365014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]); 13669230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 13679230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 1368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *); 1369273d9f13SBarry Smith 137049a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *); 1371ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt); 1372edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatDenseSetLDA()", ) static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda) 1373d71ae5a4SJacob Faibussowitsch { 13749371c9d4SSatish Balay return MatDenseSetLDA(A, lda); 13759371c9d4SSatish Balay } 1376014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *); 13771b807ce4Svictorle 1378621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1379621e819fSSatish Balay 1380014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat); 1381014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat); 13822e8a6d31SBarry Smith 1383014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *); 13847cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *); 13857b80b807SBarry Smith /* 13867b80b807SBarry Smith These routines are not usually accessed directly, rather solving is 138794b7f48cSBarry Smith done through the KSP and PC interfaces. 13887b80b807SBarry Smith */ 13897b80b807SBarry Smith 139076bdecfbSBarry Smith /*J 13912ef1f0ffSBarry Smith MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used 13922ef1f0ffSBarry Smith to reduce fill in sparse factorizations. 1393d9274352SBarry Smith 1394d9274352SBarry Smith Level: beginner 1395d9274352SBarry Smith 13962c7c0729SBarry Smith Notes: 139716a05f60SBarry Smith If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one 139816a05f60SBarry Smith of its own. 13992c7c0729SBarry Smith 14002ef1f0ffSBarry Smith There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()` 14012ef1f0ffSBarry Smith 14022ef1f0ffSBarry Smith Developer Note: 14032ef1f0ffSBarry Smith This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning` 14042ef1f0ffSBarry Smith 14051cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`, 14062ef1f0ffSBarry Smith `PCFactorSetOrderingType()` 140776bdecfbSBarry Smith J*/ 140819fd82e9SBarry Smith typedef const char *MatOrderingType; 14092692d6eeSBarry Smith #define MATORDERINGNATURAL "natural" 14102692d6eeSBarry Smith #define MATORDERINGND "nd" 14112692d6eeSBarry Smith #define MATORDERING1WD "1wd" 14122692d6eeSBarry Smith #define MATORDERINGRCM "rcm" 14132692d6eeSBarry Smith #define MATORDERINGQMD "qmd" 14142692d6eeSBarry Smith #define MATORDERINGROWLENGTH "rowlength" 1415510184a7SJed Brown #define MATORDERINGWBM "wbm" 1416fc1bef75SJed Brown #define MATORDERINGSPECTRAL "spectral" 1417312e372aSBarry Smith #define MATORDERINGAMD "amd" /* only works if UMFPACK is installed with PETSc */ 1418048412efSPablo Brubeck #define MATORDERINGMETISND "metisnd" /* only works if METIS is installed with PETSc */ 14199bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */ 14202c7c0729SBarry Smith #define MATORDERINGEXTERNAL "external" /* uses an ordering type internal to the factorization package */ 1421b12f92e5SBarry Smith 142219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrdering(Mat, MatOrderingType, IS *, IS *); 1423140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrderingList(PetscFunctionList *); 1424bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *)); 1425140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList; 1426d4fbbf0eSBarry Smith 1427013e2dc7SBarry Smith #include "petscmatcoarsen.h" 1428013e2dc7SBarry Smith 1429014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS); 1430fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *); 1431a2ce50c7SBarry Smith 14324ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *); 14334ac6704cSBarry Smith 1434d91e6319SBarry Smith /*S 14352ef1f0ffSBarry Smith MatFactorShiftType - Type of numeric shift used for factorizations 1436d90ac83dSHong Zhang 14372ef1f0ffSBarry Smith Values: 14382ef1f0ffSBarry Smith + `MAT_SHIFT_NONE` - do not shift the matrix diagonal entries 14392ef1f0ffSBarry Smith . `MAT_SHIFT_NONZERO` - shift the entries to be non-zero 14402ef1f0ffSBarry Smith . `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite 14412ef1f0ffSBarry Smith - `MAT_SHIFT_INBLOCKS` - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ` 1442d90ac83dSHong Zhang 14432ef1f0ffSBarry Smith Level: intermediate 14442ef1f0ffSBarry Smith 14451cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()` 1446d90ac83dSHong Zhang S*/ 14479371c9d4SSatish Balay typedef enum { 14489371c9d4SSatish Balay MAT_SHIFT_NONE, 14499371c9d4SSatish Balay MAT_SHIFT_NONZERO, 14509371c9d4SSatish Balay MAT_SHIFT_POSITIVE_DEFINITE, 14519371c9d4SSatish Balay MAT_SHIFT_INBLOCKS 14529371c9d4SSatish Balay } MatFactorShiftType; 14536a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[]; 14545e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[]; 1455d90ac83dSHong Zhang 1456d90ac83dSHong Zhang /*S 1457ec5066bdSBarry Smith MatFactorError - indicates what type of error was generated in a matrix factorization 14589aa7eafdSHong Zhang 14592ef1f0ffSBarry Smith Values: 14602ef1f0ffSBarry Smith + `MAT_FACTOR_NOERROR` - there was no error during the factorization 14612ef1f0ffSBarry Smith . `MAT_FACTOR_STRUCT_ZEROPIVOT` - there was a missing entry in a diagonal location of the matrix 14622ef1f0ffSBarry Smith . `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization 14632ef1f0ffSBarry Smith . `MAT_FACTOR_OUTMEMORY` - the factorization has run out of memory 14642ef1f0ffSBarry Smith - `MAT_FACTOR_OTHER` - some other error has occurred. 14659aa7eafdSHong Zhang 14662ef1f0ffSBarry Smith Level: intermediate 146700e125f8SBarry Smith 14682ef1f0ffSBarry Smith Note: 14692ef1f0ffSBarry Smith When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason` 14702ef1f0ffSBarry Smith 14711cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`, 14722ef1f0ffSBarry Smith `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason` 14739aa7eafdSHong Zhang S*/ 14749371c9d4SSatish Balay typedef enum { 14759371c9d4SSatish Balay MAT_FACTOR_NOERROR, 14769371c9d4SSatish Balay MAT_FACTOR_STRUCT_ZEROPIVOT, 14779371c9d4SSatish Balay MAT_FACTOR_NUMERIC_ZEROPIVOT, 14789371c9d4SSatish Balay MAT_FACTOR_OUTMEMORY, 14799371c9d4SSatish Balay MAT_FACTOR_OTHER 14809371c9d4SSatish Balay } MatFactorError; 14819aa7eafdSHong Zhang 148200e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *); 1483b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat); 14847b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *); 148500e125f8SBarry Smith 14869aa7eafdSHong Zhang /*S 1487422a814eSBarry Smith MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization 1488b00f7748SHong Zhang 1489b00f7748SHong Zhang Level: developer 1490b00f7748SHong Zhang 14912ef1f0ffSBarry Smith Note: 14922ef1f0ffSBarry Smith You can use `MatFactorInfoInitialize()` to set default values. 1493b00f7748SHong Zhang 14942ef1f0ffSBarry Smith Fortran Note: 14952ef1f0ffSBarry Smith The data is available in a double precision arrays of size `MAT_FACTORINFO_SIZE` 14962ef1f0ffSBarry Smith 14971cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, 14982ef1f0ffSBarry Smith `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()` 1499b00f7748SHong Zhang S*/ 1500b00f7748SHong Zhang typedef struct { 150115e8a5b3SHong Zhang PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */ 150285317021SBarry Smith PetscReal usedt; 150315e8a5b3SHong Zhang PetscReal dt; /* drop tolerance */ 1504b00f7748SHong Zhang PetscReal dtcol; /* tolerance for pivoting */ 150515e8a5b3SHong Zhang PetscReal dtcount; /* maximum nonzeros to be allowed per row */ 150667e28bfeSBarry Smith PetscReal fill; /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */ 1507348344bbSBarry Smith PetscReal levels; /* ICC/ILU(levels) */ 1508bcd9e38bSBarry Smith PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 1509bcd9e38bSBarry Smith factorization may be faster if do not pivot */ 151015e8a5b3SHong Zhang PetscReal zeropivot; /* pivot is called zero if less than this */ 1511f4db908eSBarry Smith PetscReal shifttype; /* type of shift added to matrix factor to prevent zero pivots */ 1512f4db908eSBarry Smith PetscReal shiftamount; /* how large the shift is */ 151315e8a5b3SHong Zhang } MatFactorInfo; 1514ffa6d0a5SLois Curfman McInnes 1515014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *); 15169a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *); 15179a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15189a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *); 15199a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *); 15209a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *); 15219a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 15229a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 15239a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15249a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *); 15259a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *); 15263f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *); 15273f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15283f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *); 1529014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *); 1530014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec); 1531014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec); 1532014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec); 1533014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec); 1534014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec); 1535014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec); 1536014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs); 15377c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat); 15387c2f51b8SStefano Zampini 15399371c9d4SSatish Balay typedef enum { 15409371c9d4SSatish Balay MAT_FACTOR_SCHUR_UNFACTORED, 15419371c9d4SSatish Balay MAT_FACTOR_SCHUR_FACTORED, 15429371c9d4SSatish Balay MAT_FACTOR_SCHUR_INVERTED 15439371c9d4SSatish Balay } MatFactorSchurStatus; 15448e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS); 15457c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 15467c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus); 15475a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat); 15487c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 15495a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec); 15505a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec); 15516dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat); 1552bb5a7306SBarry Smith 15538a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat); 1554d91e6319SBarry Smith /*E 1555d91e6319SBarry Smith MatSORType - What type of (S)SOR to perform 1556bb1eb677SSatish Balay 15572ef1f0ffSBarry Smith Values: 15582ef1f0ffSBarry Smith + `SOR_FORWARD_SWEEP` - do a sweep from the first row of the matrix to the last 15592ef1f0ffSBarry Smith . `SOR_BACKWARD_SWEEP` - do a sweep from the last row to the first 15602ef1f0ffSBarry Smith . `SOR_SYMMETRIC_SWEEP` - do a sweep from the first row to the last and then back to the first 15612ef1f0ffSBarry Smith . `SOR_LOCAL_FORWARD_SWEEP` - each MPI rank does its own forward sweep with no communication 15622ef1f0ffSBarry Smith . `SOR_LOCAL_BACKWARD_SWEEP` - each MPI rank does its own backward sweep with no communication 15632ef1f0ffSBarry Smith . `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI rank does its own symmetric sweep with no communication 15642ef1f0ffSBarry Smith . `SOR_ZERO_INITIAL_GUESS` - indicates the initial solution is zero so the sweep can avoid unneeded computation 15652ef1f0ffSBarry Smith . `SOR_EISENSTAT` - apply the Eisentat application of SOR, see `PCEISENSTAT` 15662ef1f0ffSBarry Smith . `SOR_APPLY_UPPER` - multiply by the upper triangular portion of the matrix 15672ef1f0ffSBarry Smith - `SOR_APPLY_LOWER` - multiply by the lower triangular portion of the matrix 15682ef1f0ffSBarry Smith 1569d91e6319SBarry Smith Level: beginner 1570d91e6319SBarry Smith 15712ef1f0ffSBarry Smith Note: 15722ef1f0ffSBarry Smith These may be bitwise ORd together 1573d9274352SBarry Smith 15742ef1f0ffSBarry Smith Developer Note: 15752ef1f0ffSBarry Smith Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below 1576d91e6319SBarry Smith 15771cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSOR()` 1578d91e6319SBarry Smith E*/ 15799371c9d4SSatish Balay typedef enum { 15809371c9d4SSatish Balay SOR_FORWARD_SWEEP = 1, 15819371c9d4SSatish Balay SOR_BACKWARD_SWEEP = 2, 15829371c9d4SSatish Balay SOR_SYMMETRIC_SWEEP = 3, 15839371c9d4SSatish Balay SOR_LOCAL_FORWARD_SWEEP = 4, 15849371c9d4SSatish Balay SOR_LOCAL_BACKWARD_SWEEP = 8, 15859371c9d4SSatish Balay SOR_LOCAL_SYMMETRIC_SWEEP = 12, 15869371c9d4SSatish Balay SOR_ZERO_INITIAL_GUESS = 16, 15879371c9d4SSatish Balay SOR_EISENSTAT = 32, 15889371c9d4SSatish Balay SOR_APPLY_UPPER = 64, 15899371c9d4SSatish Balay SOR_APPLY_LOWER = 128 15909371c9d4SSatish Balay } MatSORType; 1591014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec); 15928ed539a5SBarry Smith 15937086a01eSPeter Brune /*S 15947086a01eSPeter Brune MatColoring - Object for managing the coloring of matrices. 15957086a01eSPeter Brune 15967086a01eSPeter Brune Level: beginner 15977086a01eSPeter Brune 1598ec5066bdSBarry Smith Notes: 159987497f52SBarry Smith Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 160087497f52SBarry Smith matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors). 1601ec5066bdSBarry Smith 160287497f52SBarry Smith Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This 16032ef1f0ffSBarry Smith same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices. 1604ec5066bdSBarry Smith 16051cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`, 16062ef1f0ffSBarry Smith `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`, 16072ef1f0ffSBarry Smith `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen` 16087086a01eSPeter Brune S*/ 1609d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring; 1610d4db15c4SBarry Smith 1611d4db15c4SBarry Smith /*J 1612d4db15c4SBarry Smith MatColoringType - String with the name of a PETSc matrix coloring 1613d9274352SBarry Smith 1614d9274352SBarry Smith Level: beginner 1615d9274352SBarry Smith 16161cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring` 161776bdecfbSBarry Smith J*/ 161819fd82e9SBarry Smith typedef const char *MatColoringType; 16195567d71aSPeter Brune #define MATCOLORINGJP "jp" 1620b9acb617SPeter Brune #define MATCOLORINGPOWER "power" 16212692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural" 16222692d6eeSBarry Smith #define MATCOLORINGSL "sl" 16232692d6eeSBarry Smith #define MATCOLORINGLF "lf" 16242692d6eeSBarry Smith #define MATCOLORINGID "id" 16258121bdceSPeter Brune #define MATCOLORINGGREEDY "greedy" 1626b12f92e5SBarry Smith 16278ac6da0aSPeter Brune /*E 16282ef1f0ffSBarry Smith MatColoringWeightType - Type of weight scheme used for the coloring algorithm 16298ac6da0aSPeter Brune 16302ef1f0ffSBarry Smith Values: 163187497f52SBarry Smith + `MAT_COLORING_RANDOM` - Random weights 163287497f52SBarry Smith . `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering. 163387497f52SBarry Smith - `MAT_COLORING_LF` - Last-first weighting. 16348ac6da0aSPeter Brune 16358ac6da0aSPeter Brune Level: intermediate 16368ac6da0aSPeter Brune 16371cc06b55SBarry Smith .seealso: [](ch_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()` 16388ac6da0aSPeter Brune E*/ 16399371c9d4SSatish Balay typedef enum { 16409371c9d4SSatish Balay MAT_COLORING_WEIGHT_RANDOM, 16419371c9d4SSatish Balay MAT_COLORING_WEIGHT_LEXICAL, 16429371c9d4SSatish Balay MAT_COLORING_WEIGHT_LF, 16439371c9d4SSatish Balay MAT_COLORING_WEIGHT_SL 16449371c9d4SSatish Balay } MatColoringWeightType; 16458ac6da0aSPeter Brune 1646335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *); 1647d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *); 1648335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *); 1649335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer); 1650335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType); 1651335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring); 1652335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt); 1653335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *); 1654335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt); 1655335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *); 1656335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *); 1657335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring)); 1658014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *); 16598ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType); 1660c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *); 16618ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm); 1662bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring); 1663edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatColoringTest()", ) static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring) 1664d71ae5a4SJacob Faibussowitsch { 16659371c9d4SSatish Balay return MatColoringTest(matcoloring, iscoloring); 16669371c9d4SSatish Balay } 1667bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring); 1668639f9d9dSBarry Smith 1669d9274352SBarry Smith /*S 167087497f52SBarry Smith MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring 1671639f9d9dSBarry Smith 1672d9274352SBarry Smith Level: beginner 1673d9274352SBarry Smith 1674ec5066bdSBarry Smith Notes: 167587497f52SBarry Smith This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()` 1676ec5066bdSBarry Smith 16772ef1f0ffSBarry Smith The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object 16782ef1f0ffSBarry Smith 16791cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()` 1680d9274352SBarry Smith S*/ 1681e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring; 1682639f9d9dSBarry Smith 1683014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *); 1684014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *); 1685014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer); 1686014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *); 1687014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **); 1688014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal); 1689014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring); 1690d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *); 1691014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec); 1692edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]); 1693f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring); 1694f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt); 1695bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *); 1696b1683b59SHong Zhang 1697b1683b59SHong Zhang /*S 1698b9af6bddSHong Zhang MatTransposeColoring - Object for computing a sparse matrix product C=A*B^T via coloring 1699b1683b59SHong Zhang 17002ef1f0ffSBarry Smith Level: developer 1701b1683b59SHong Zhang 17021cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()` 1703b1683b59SHong Zhang S*/ 1704b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring; 1705b1683b59SHong Zhang 1706014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *); 1707014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat); 1708014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat); 1709014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *); 1710b1683b59SHong Zhang 1711d9274352SBarry Smith /*S 1712d9274352SBarry Smith MatPartitioning - Object for managing the partitioning of a matrix or graph 1713d9274352SBarry Smith 1714d9274352SBarry Smith Level: beginner 1715d9274352SBarry Smith 171687497f52SBarry Smith Note: 171787497f52SBarry Smith There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations 171887497f52SBarry Smith via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`) 1719ec5066bdSBarry Smith 1720ec5066bdSBarry Smith Developers Note: 17212ef1f0ffSBarry Smith It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed 1722ec5066bdSBarry Smith 17231cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`, 17242ef1f0ffSBarry Smith `MatCoarsenType`, `MatCoarsenType` 1725d9274352SBarry Smith S*/ 172691e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning; 1727d9274352SBarry Smith 172876bdecfbSBarry Smith /*J 17298f6c3df8SBarry Smith MatPartitioningType - String with the name of a PETSc matrix partitioning 1730d9274352SBarry Smith 1731d9274352SBarry Smith Level: beginner 17320d04baf8SBarry Smith dm 17331cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`, 17342ef1f0ffSBarry Smith `MatCoarsenType`, `MatCoarsenType` 173576bdecfbSBarry Smith J*/ 173619fd82e9SBarry Smith typedef const char *MatPartitioningType; 17372692d6eeSBarry Smith #define MATPARTITIONINGCURRENT "current" 1738aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE "average" 17392692d6eeSBarry Smith #define MATPARTITIONINGSQUARE "square" 17402692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis" 17412692d6eeSBarry Smith #define MATPARTITIONINGCHACO "chaco" 17422692d6eeSBarry Smith #define MATPARTITIONINGPARTY "party" 174350d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch" 174488d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch" 174571306c60Sjroman 1746014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *); 174719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType); 1748014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt); 1749014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat); 1750252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt); 1751014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]); 1752014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]); 1753ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool); 1754ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *); 1755014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *); 1756fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *); 1757668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS); 1758f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *); 1759014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *); 1760bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning)); 1761014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer); 1762fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]); 1763014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning); 176419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *); 1765ca161407SBarry Smith 176627538973SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part); 1767014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning); 1768014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *); 17690752156aSBarry Smith 17709371c9d4SSatish Balay typedef enum { 17719371c9d4SSatish Balay MP_CHACO_MULTILEVEL = 1, 17729371c9d4SSatish Balay MP_CHACO_SPECTRAL = 2, 17739371c9d4SSatish Balay MP_CHACO_LINEAR = 4, 17749371c9d4SSatish Balay MP_CHACO_RANDOM = 5, 17759371c9d4SSatish Balay MP_CHACO_SCATTERED = 6 17769371c9d4SSatish Balay } MPChacoGlobalType; 17776a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[]; 17789371c9d4SSatish Balay typedef enum { 17799371c9d4SSatish Balay MP_CHACO_KERNIGHAN = 1, 17809371c9d4SSatish Balay MP_CHACO_NONE = 2 17819371c9d4SSatish Balay } MPChacoLocalType; 17826a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[]; 17839371c9d4SSatish Balay typedef enum { 17849371c9d4SSatish Balay MP_CHACO_LANCZOS = 0, 17859371c9d4SSatish Balay MP_CHACO_RQI = 1 17869371c9d4SSatish Balay } MPChacoEigenType; 17876a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[]; 1788b6956c12SJose Roman 1789014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType); 1790014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *); 1791014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType); 1792014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *); 1793014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal); 1794014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType); 1795014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *); 1796014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal); 1797014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *); 1798014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt); 1799014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *); 180071306c60Sjroman 180171306c60Sjroman #define MP_PARTY_OPT "opt" 180271306c60Sjroman #define MP_PARTY_LIN "lin" 180371306c60Sjroman #define MP_PARTY_SCA "sca" 180471306c60Sjroman #define MP_PARTY_RAN "ran" 180571306c60Sjroman #define MP_PARTY_GBF "gbf" 180671306c60Sjroman #define MP_PARTY_GCF "gcf" 180771306c60Sjroman #define MP_PARTY_BUB "bub" 180871306c60Sjroman #define MP_PARTY_DEF "def" 1809014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *); 181071306c60Sjroman #define MP_PARTY_HELPFUL_SETS "hs" 181171306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl" 181271306c60Sjroman #define MP_PARTY_NONE "no" 1813014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *); 1814014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal); 1815014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool); 1816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool); 181771306c60Sjroman 18189371c9d4SSatish Balay typedef enum { 18199371c9d4SSatish Balay MP_PTSCOTCH_DEFAULT, 18209371c9d4SSatish Balay MP_PTSCOTCH_QUALITY, 18219371c9d4SSatish Balay MP_PTSCOTCH_SPEED, 18229371c9d4SSatish Balay MP_PTSCOTCH_BALANCE, 18239371c9d4SSatish Balay MP_PTSCOTCH_SAFETY, 18249371c9d4SSatish Balay MP_PTSCOTCH_SCALABILITY 18259371c9d4SSatish Balay } MPPTScotchStrategyType; 18266a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[]; 1827e0f1cffaSJose Roman 1828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal); 1829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *); 1830014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType); 1831014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *); 183271306c60Sjroman 1833b43b03e9SMark F. Adams /* 18346294fa2bSFande Kong * hierarchical partitioning 18356294fa2bSFande Kong */ 18364e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *); 18374e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *); 18384e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt); 18394e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt); 18406294fa2bSFande Kong 1841014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *); 1842591294e4SBarry Smith 18430752156aSBarry Smith /* 1844c786d857SStefano Zampini If you add entries here you must also add them to src/mat/f90-mod/petscmat.h 1845c786d857SStefano Zampini If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx 1846d4fbbf0eSBarry Smith */ 18479371c9d4SSatish Balay typedef enum { 18489371c9d4SSatish Balay MATOP_SET_VALUES = 0, 18491c1c02c0SLois Curfman McInnes MATOP_GET_ROW = 1, 18501c1c02c0SLois Curfman McInnes MATOP_RESTORE_ROW = 2, 18511c1c02c0SLois Curfman McInnes MATOP_MULT = 3, 18521c1c02c0SLois Curfman McInnes MATOP_MULT_ADD = 4, 18537c922b88SBarry Smith MATOP_MULT_TRANSPOSE = 5, 18547c922b88SBarry Smith MATOP_MULT_TRANSPOSE_ADD = 6, 18551c1c02c0SLois Curfman McInnes MATOP_SOLVE = 7, 18561c1c02c0SLois Curfman McInnes MATOP_SOLVE_ADD = 8, 18577c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE = 9, 18587c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE_ADD = 10, 18591c1c02c0SLois Curfman McInnes MATOP_LUFACTOR = 11, 18601c1c02c0SLois Curfman McInnes MATOP_CHOLESKYFACTOR = 12, 1861a714c06dSBarry Smith MATOP_SOR = 13, 18621c1c02c0SLois Curfman McInnes MATOP_TRANSPOSE = 14, 18631c1c02c0SLois Curfman McInnes MATOP_GETINFO = 15, 18641c1c02c0SLois Curfman McInnes MATOP_EQUAL = 16, 18651c1c02c0SLois Curfman McInnes MATOP_GET_DIAGONAL = 17, 18661c1c02c0SLois Curfman McInnes MATOP_DIAGONAL_SCALE = 18, 18671c1c02c0SLois Curfman McInnes MATOP_NORM = 19, 18681c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_BEGIN = 20, 18691c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_END = 21, 1870d519adbfSMatthew Knepley MATOP_SET_OPTION = 22, 1871d519adbfSMatthew Knepley MATOP_ZERO_ENTRIES = 23, 1872d519adbfSMatthew Knepley MATOP_ZERO_ROWS = 24, 1873d519adbfSMatthew Knepley MATOP_LUFACTOR_SYMBOLIC = 25, 1874d519adbfSMatthew Knepley MATOP_LUFACTOR_NUMERIC = 26, 1875d519adbfSMatthew Knepley MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27, 1876d519adbfSMatthew Knepley MATOP_CHOLESKY_FACTOR_NUMERIC = 28, 1877e5f2d425SStefano Zampini MATOP_SETUP = 29, 1878d519adbfSMatthew Knepley MATOP_ILUFACTOR_SYMBOLIC = 30, 1879d519adbfSMatthew Knepley MATOP_ICCFACTOR_SYMBOLIC = 31, 1880a5b7ff6bSBarry Smith MATOP_GET_DIAGONAL_BLOCK = 32, 1881e5f2d425SStefano Zampini MATOP_SET_INF = 33, 1882d519adbfSMatthew Knepley MATOP_DUPLICATE = 34, 1883d519adbfSMatthew Knepley MATOP_FORWARD_SOLVE = 35, 1884d519adbfSMatthew Knepley MATOP_BACKWARD_SOLVE = 36, 1885d519adbfSMatthew Knepley MATOP_ILUFACTOR = 37, 1886d519adbfSMatthew Knepley MATOP_ICCFACTOR = 38, 1887d519adbfSMatthew Knepley MATOP_AXPY = 39, 18887dae84e0SHong Zhang MATOP_CREATE_SUBMATRICES = 40, 1889d519adbfSMatthew Knepley MATOP_INCREASE_OVERLAP = 41, 1890d519adbfSMatthew Knepley MATOP_GET_VALUES = 42, 1891d519adbfSMatthew Knepley MATOP_COPY = 43, 1892d519adbfSMatthew Knepley MATOP_GET_ROW_MAX = 44, 1893d519adbfSMatthew Knepley MATOP_SCALE = 45, 1894d519adbfSMatthew Knepley MATOP_SHIFT = 46, 189535153367SBarry Smith MATOP_DIAGONAL_SET = 47, 18969d39f69dSJed Brown MATOP_ZERO_ROWS_COLUMNS = 48, 18979d39f69dSJed Brown MATOP_SET_RANDOM = 49, 1898d519adbfSMatthew Knepley MATOP_GET_ROW_IJ = 50, 1899d519adbfSMatthew Knepley MATOP_RESTORE_ROW_IJ = 51, 1900d519adbfSMatthew Knepley MATOP_GET_COLUMN_IJ = 52, 1901d519adbfSMatthew Knepley MATOP_RESTORE_COLUMN_IJ = 53, 1902d519adbfSMatthew Knepley MATOP_FDCOLORING_CREATE = 54, 1903d519adbfSMatthew Knepley MATOP_COLORING_PATCH = 55, 1904d519adbfSMatthew Knepley MATOP_SET_UNFACTORED = 56, 1905d519adbfSMatthew Knepley MATOP_PERMUTE = 57, 1906d519adbfSMatthew Knepley MATOP_SET_VALUES_BLOCKED = 58, 19077dae84e0SHong Zhang MATOP_CREATE_SUBMATRIX = 59, 1908d519adbfSMatthew Knepley MATOP_DESTROY = 60, 1909d519adbfSMatthew Knepley MATOP_VIEW = 61, 1910d519adbfSMatthew Knepley MATOP_CONVERT_FROM = 62, 1911e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_63=63 */ 19127bab7c10SHong Zhang MATOP_MATMAT_MULT_SYMBOLIC = 64, 19137bab7c10SHong Zhang MATOP_MATMAT_MULT_NUMERIC = 65, 1914d519adbfSMatthew Knepley MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66, 1915d519adbfSMatthew Knepley MATOP_SET_VALUES_LOCAL = 67, 1916d519adbfSMatthew Knepley MATOP_ZERO_ROWS_LOCAL = 68, 1917d519adbfSMatthew Knepley MATOP_GET_ROW_MAX_ABS = 69, 1918d519adbfSMatthew Knepley MATOP_GET_ROW_MIN_ABS = 70, 1919d519adbfSMatthew Knepley MATOP_CONVERT = 71, 1920e5f2d425SStefano Zampini MATOP_HAS_OPERATION = 72, 19219d39f69dSJed Brown /* MATOP_PLACEHOLDER_73=73, */ 1922d519adbfSMatthew Knepley MATOP_SET_VALUES_ADIFOR = 74, 1923d519adbfSMatthew Knepley MATOP_FD_COLORING_APPLY = 75, 1924d519adbfSMatthew Knepley MATOP_SET_FROM_OPTIONS = 76, 1925e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_77=77, */ 1926e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_78=78, */ 19279d39f69dSJed Brown MATOP_FIND_ZERO_DIAGONALS = 79, 1928d519adbfSMatthew Knepley MATOP_MULT_MULTIPLE = 80, 1929d519adbfSMatthew Knepley MATOP_SOLVE_MULTIPLE = 81, 1930d519adbfSMatthew Knepley MATOP_GET_INERTIA = 82, 1931d519adbfSMatthew Knepley MATOP_LOAD = 83, 1932d519adbfSMatthew Knepley MATOP_IS_SYMMETRIC = 84, 1933d519adbfSMatthew Knepley MATOP_IS_HERMITIAN = 85, 1934d519adbfSMatthew Knepley MATOP_IS_STRUCTURALLY_SYMMETRIC = 86, 1935820469bcSHong Zhang MATOP_SET_VALUES_BLOCKEDLOCAL = 87, 1936b41ce5d5SBarry Smith MATOP_CREATE_VECS = 88, 1937e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_89=89, */ 1938d519adbfSMatthew Knepley MATOP_MAT_MULT_SYMBOLIC = 90, 1939d519adbfSMatthew Knepley MATOP_MAT_MULT_NUMERIC = 91, 1940e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_92=92, */ 1941d519adbfSMatthew Knepley MATOP_PTAP_SYMBOLIC = 93, 1942d519adbfSMatthew Knepley MATOP_PTAP_NUMERIC = 94, 1943e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_95=95, */ 1944bda6c4cbSBarry Smith MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96, 1945bda6c4cbSBarry Smith MATOP_MAT_TRANSPOSE_MULT_NUMER = 97, 1946e5f2d425SStefano Zampini MATOP_BIND_TO_CPU = 98, 19477a3c3d58SStefano Zampini MATOP_PRODUCTSETFROMOPTIONS = 99, 19487a3c3d58SStefano Zampini MATOP_PRODUCTSYMBOLIC = 100, 19497a3c3d58SStefano Zampini MATOP_PRODUCTNUMERIC = 101, 1950d519adbfSMatthew Knepley MATOP_CONJUGATE = 102, 1951e5f2d425SStefano Zampini MATOP_VIEW_NATIVE = 103, 1952d519adbfSMatthew Knepley MATOP_SET_VALUES_ROW = 104, 1953d519adbfSMatthew Knepley MATOP_REAL_PART = 105, 1954bda6c4cbSBarry Smith MATOP_IMAGINARY_PART = 106, 1955bda6c4cbSBarry Smith MATOP_GET_ROW_UPPER_TRIANGULAR = 107, 1956bda6c4cbSBarry Smith MATOP_RESTORE_ROW_UPPER_TRIANG = 108, 1957bda6c4cbSBarry Smith MATOP_MAT_SOLVE = 109, 195829eadf9eSStefano Zampini MATOP_MAT_SOLVE_TRANSPOSE = 110, 1959d519adbfSMatthew Knepley MATOP_GET_ROW_MIN = 111, 19600e8d04f7SBarry Smith MATOP_GET_COLUMN_VECTOR = 112, 1961d519adbfSMatthew Knepley MATOP_MISSING_DIAGONAL = 113, 19620e8d04f7SBarry Smith MATOP_GET_SEQ_NONZERO_STRUCTUR = 114, 196389c6957cSBarry Smith MATOP_CREATE = 115, 196489c6957cSBarry Smith MATOP_GET_GHOSTS = 116, 19650e8d04f7SBarry Smith MATOP_GET_LOCAL_SUB_MATRIX = 117, 19660e8d04f7SBarry Smith MATOP_RESTORE_LOCALSUB_MATRIX = 118, 1967eeffb40dSHong Zhang MATOP_MULT_DIAGONAL_BLOCK = 119, 19680e8d04f7SBarry Smith MATOP_HERMITIAN_TRANSPOSE = 120, 19690e8d04f7SBarry Smith MATOP_MULT_HERMITIAN_TRANSPOSE = 121, 19700e8d04f7SBarry Smith MATOP_MULT_HERMITIAN_TRANS_ADD = 122, 19710e8d04f7SBarry Smith MATOP_GET_MULTI_PROC_BLOCK = 123, 19729d39f69dSJed Brown MATOP_FIND_NONZERO_ROWS = 124, 19730e8d04f7SBarry Smith MATOP_GET_COLUMN_NORMS = 125, 19749d39f69dSJed Brown MATOP_INVERT_BLOCK_DIAGONAL = 126, 1975e5f2d425SStefano Zampini MATOP_INVERT_VBLOCK_DIAGONAL = 127, 1976b41ce5d5SBarry Smith MATOP_CREATE_SUB_MATRICES_MPI = 128, 19772b8ad9a3SHong Zhang MATOP_SET_VALUES_BATCH = 129, 1978e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_130=130, */ 19790e8d04f7SBarry Smith MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131, 1980e9b602ebSSatish Balay MATOP_TRANSPOSE_MAT_MULT_NUMER = 132, 19810e8d04f7SBarry Smith MATOP_TRANSPOSE_COLORING_CREAT = 133, 19820e8d04f7SBarry Smith MATOP_TRANS_COLORING_APPLY_SPT = 134, 19830e8d04f7SBarry Smith MATOP_TRANS_COLORING_APPLY_DEN = 135, 1984e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_136=136, */ 19850e8d04f7SBarry Smith MATOP_RART_SYMBOLIC = 137, 19860e8d04f7SBarry Smith MATOP_RART_NUMERIC = 138, 1987e09a3074SHong Zhang MATOP_SET_BLOCK_SIZES = 139, 1988f9426fe0SMark Adams MATOP_AYPX = 140, 19891919a2e2SJed Brown MATOP_RESIDUAL = 141, 19909c8f2541SHong Zhang MATOP_FDCOLORING_SETUP = 142, 1991e5f2d425SStefano Zampini MATOP_FIND_OFFBLOCK_ENTRIES = 143, 19922d033e1fSHong Zhang MATOP_MPICONCATENATESEQ = 144, 1993bb01b7b0SPatrick Sanan MATOP_DESTROYSUBMATRICES = 145, 1994e265f6d6SPatrick Sanan MATOP_TRANSPOSE_SOLVE = 146, 1995e265f6d6SPatrick Sanan MATOP_GET_VALUES_LOCAL = 147 1996fae171e0SBarry Smith } MatOperation; 19970c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void)); 1998976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void)); 1999976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *); 200094342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *); 2001edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatProductClear()", ) static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A) 2002d71ae5a4SJacob Faibussowitsch { 20039371c9d4SSatish Balay return MatProductClear(A); 20049371c9d4SSatish Balay } 2005014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void)); 2006014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void)); 2007014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *); 2008800f99ffSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *)); 2009db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType); 2010f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 2011f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 20120c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat); 2013b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType); 2014b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *); 2015112a2221SBarry Smith 201690ace30eSBarry Smith /* 201790ace30eSBarry Smith Codes for matrices stored on disk. By default they are 201890ace30eSBarry Smith stored in a universal format. By changing the format with 20196a9046bcSBarry Smith PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will 202090ace30eSBarry Smith be stored in a way natural for the matrix, for example dense matrices 202190ace30eSBarry Smith would be stored as dense. Matrices stored this way may only be 2022f4403165SShri Abhyankar read into matrices of the same type. 202390ace30eSBarry Smith */ 202490ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1 202590ace30eSBarry Smith 2026014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal); 202775d48cdbSStefano Zampini 20288546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType); 202975d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 203075d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool); 2031f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool); 2032014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *); 20333b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *); 2034014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat); 2035e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 2036edd03b47SJacob Faibussowitsch PETSC_EXTERN PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatConvert()", ) PetscErrorCode MatISGetMPIXAIJ(Mat, MatReuse, Mat *); 20371f4e1ec7SBarry Smith 2038d9274352SBarry Smith /*S 2039d9274352SBarry Smith MatNullSpace - Object that removes a null space from a vector, i.e. 2040cb6b9846SMatthew Knepley orthogonalizes the vector to a subspace 2041d9274352SBarry Smith 2042f7a9e4ceSBarry Smith Level: advanced 2043d9274352SBarry Smith 20441cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()` 2045d9274352SBarry Smith S*/ 204674637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace; 2047d9274352SBarry Smith 2048014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *); 2049014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *); 2050014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *); 2051d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec); 2052014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *); 20535fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *); 20545fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace); 2055014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace); 2056014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace); 2057014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *); 2058014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *); 2059014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer); 2060014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **); 2061014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *); 206274637425SBarry Smith 2063014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS); 2064014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal); 2065014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *); 20663f1d51d7SBarry Smith 2067014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *); 2068014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *); 2069014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *); 2070c4f061fbSSatish Balay 20710bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *); 20720bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *); 20730bacdadaSStefano Zampini 2074edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperator()", ) static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B) 2075d71ae5a4SJacob Faibussowitsch { 2076f22e26b7SPierre Jolivet return MatComputeOperator(A, PETSC_NULLPTR, B); 20779371c9d4SSatish Balay } 2078edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperatorTranspose()", ) static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B) 2079d71ae5a4SJacob Faibussowitsch { 2080f22e26b7SPierre Jolivet return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B); 20819371c9d4SSatish Balay } 2082b0a32e0cSBarry Smith 208349bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *); 208449bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *); 2085a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **); 2086a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2087a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **); 2088a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **); 2089a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **); 2090a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2091a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **); 2092a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **); 2093dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat); 2094dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]); 2095dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]); 2096910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *); 209749bd79ccSDebojyoti Ghosh 2098014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec); 209904f1ad80SBarry Smith 2100*4bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDInitializePackage(void); 2101*4bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDFinalizePackage(void); 2102*4bf303faSJacob Faibussowitsch 2103014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2104014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec); 2105014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *); 2106014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *)); 2107014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec)); 2108014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt); 2109014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat); 2110014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal); 2111014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt); 2112014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *); 2113014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]); 2114014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *); 2115014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *); 2116e884886fSBarry Smith 21176370053bSBarry Smith /*S 21186370053bSBarry Smith MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free 21196370053bSBarry Smith Jacobian vector products 2120e884886fSBarry Smith 21212ef1f0ffSBarry Smith Level: developer 21222ef1f0ffSBarry Smith 212395452b02SPatrick Sanan Notes: 212487497f52SBarry Smith `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure 21256370053bSBarry Smith 21262ef1f0ffSBarry Smith MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure 21276370053bSBarry Smith 21282ef1f0ffSBarry Smith This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator` 21296370053bSBarry Smith 21301cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`, 21312ef1f0ffSBarry Smith `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator` 21326370053bSBarry Smith S*/ 2133e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD; 2134e884886fSBarry Smith 213576bdecfbSBarry Smith /*J 21362ef1f0ffSBarry Smith MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function 2137e884886fSBarry Smith 213816a05f60SBarry Smith Values: 213916a05f60SBarry Smith + `MATMFFD_DS` - an algorithm described by Dennis and Schnabel 214016a05f60SBarry Smith - `MATMFFD_WP` - the Walker-Pernice strategy. 214116a05f60SBarry Smith 2142e884886fSBarry Smith Level: beginner 2143e884886fSBarry Smith 21441cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()` 214576bdecfbSBarry Smith J*/ 214619fd82e9SBarry Smith typedef const char *MatMFFDType; 2147e884886fSBarry Smith #define MATMFFD_DS "ds" 2148e884886fSBarry Smith #define MATMFFD_WP "wp" 2149e884886fSBarry Smith 215019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType); 2151bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD)); 2152e884886fSBarry Smith 2153014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal); 2154014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool); 2155e884886fSBarry Smith 215661ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType); 215761ab5df0SBarry Smith 2158014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *); 2159014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *); 21607dbadf16SMatthew Knepley 216153022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS 216253022affSStefano Zampini PETSC_EXTERN_TYPEDEF typedef PetscScalar (*MatH2OpusKernel)(PetscInt, PetscReal[], PetscReal[], void *); 216353022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernel, void *, PetscReal, PetscInt, PetscInt, Mat *); 216453022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *); 216553022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal); 216653022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat); 216753022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal); 216853022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool); 216953022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *); 217053022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *); 217153022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *); 2172300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar); 2173a0d2e7d8SStefano Zampini #endif 2174a0d2e7d8SStefano Zampini 2175c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL 217698e73e17SPierre Jolivet PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatHtoolKernel)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *); 2177c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernel, void *, Mat *); 2178c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernel, void *); 217998e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *); 218098e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *); 218198e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool); 21822ef1f0ffSBarry Smith 2183c7a4214aSPierre Jolivet /*E 218487497f52SBarry Smith MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL` 2185c7a4214aSPierre Jolivet 2186c7a4214aSPierre Jolivet Values: 218787497f52SBarry Smith + `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation 218887497f52SBarry Smith . `MAT_HTOOL_COMPRESSOR_FULL_ACA` - full adaptive cross approximation 218987497f52SBarry Smith - `MAT_HTOOL_COMPRESSOR_SVD` - singular value decomposition 2190c7a4214aSPierre Jolivet 219116a05f60SBarry Smith Level: intermediate 219216a05f60SBarry Smith 21931cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType` 2194c7a4214aSPierre Jolivet E*/ 21959371c9d4SSatish Balay typedef enum { 21969371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA, 21979371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_FULL_ACA, 21989371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_SVD 21999371c9d4SSatish Balay } MatHtoolCompressorType; 22002ef1f0ffSBarry Smith 220198e73e17SPierre Jolivet /*E 220287497f52SBarry Smith MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL` 220398e73e17SPierre Jolivet 220498e73e17SPierre Jolivet Values: 220587497f52SBarry Smith + `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default) - axis computed via principle component analysis, split uniformly 220687497f52SBarry Smith . `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC` - axis computed via principle component analysis, split barycentrically 220787497f52SBarry Smith . `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR` - axis along the largest extent of the bounding box, split uniformly 220887497f52SBarry Smith - `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically 220998e73e17SPierre Jolivet 221016a05f60SBarry Smith Level: intermediate 221116a05f60SBarry Smith 22122ef1f0ffSBarry Smith Note: 22132ef1f0ffSBarry Smith Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types 221498e73e17SPierre Jolivet 22151cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType` 221698e73e17SPierre Jolivet E*/ 22179371c9d4SSatish Balay typedef enum { 22189371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_PCA_REGULAR, 22199371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC, 22209371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR, 22219371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC 22229371c9d4SSatish Balay } MatHtoolClusteringType; 2223c7a4214aSPierre Jolivet #endif 2224c7a4214aSPierre Jolivet 222597969023SHong Zhang #ifdef PETSC_HAVE_MUMPS 2226014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt); 2227bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *); 2228b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal); 2229bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *); 2230bc6112feSHong Zhang 2231ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *); 2232ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *); 2233ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *); 2234ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *); 22355c0bae8cSAshish Patel PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **); 223689a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat); 22370e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat); 223897969023SHong Zhang #endif 223923a5497aSJed Brown 2240b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO 2241d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt); 2242b500a6b7SJose David Bermeol #endif 2243b500a6b7SJose David Bermeol 2244d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO 2245d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt); 2246d305a81bSVasiliy Kozyrev #endif 2247d305a81bSVasiliy Kozyrev 2248d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU 2249014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal); 2250d954db57SHong Zhang #endif 2251d954db57SHong Zhang 2252fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST 2253fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *); 2254fb785984SHong Zhang #endif 2255fb785984SHong Zhang 2256575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK 2257542aee0fSPieter Ghysels /*E 22582ef1f0ffSBarry Smith MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK`` 2259542aee0fSPieter Ghysels 22602ef1f0ffSBarry Smith Values: 22612ef1f0ffSBarry Smith + `MAT_STRUMPACK_NATURAL` - use the current ordering 22622ef1f0ffSBarry Smith . `MAT_STRUMPACK_METIS` - use MeTis to compute an ordering 22632ef1f0ffSBarry Smith . `MAT_STRUMPACK_PARMETIS` - use ParMeTis to compute an ordering 22642ef1f0ffSBarry Smith . `MAT_STRUMPACK_SCOTCH` - use Scotch to compute an ordering 22652ef1f0ffSBarry Smith . `MAT_STRUMPACK_PTSCOTCH` - use parallel Scotch to compute an ordering 22662ef1f0ffSBarry Smith - `MAT_STRUMPACK_RCM` - use an RCM ordering 22672ef1f0ffSBarry Smith 226816a05f60SBarry Smith Level: intermediate 226916a05f60SBarry Smith 22702ef1f0ffSBarry Smith Developer Note: 22712ef1f0ffSBarry Smith Should be called `MatSTRUMPACKReorderingType` 22722ef1f0ffSBarry Smith 22732ef1f0ffSBarry Smith .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetHSSRelTol()`, `MatSTRUMPACKSetReordering()` 2274542aee0fSPieter Ghysels E*/ 22759371c9d4SSatish Balay typedef enum { 22769371c9d4SSatish Balay MAT_STRUMPACK_NATURAL = 0, 227734f43fa5SPieter Ghysels MAT_STRUMPACK_METIS = 1, 227834f43fa5SPieter Ghysels MAT_STRUMPACK_PARMETIS = 2, 227934f43fa5SPieter Ghysels MAT_STRUMPACK_SCOTCH = 3, 228034f43fa5SPieter Ghysels MAT_STRUMPACK_PTSCOTCH = 4, 22819371c9d4SSatish Balay MAT_STRUMPACK_RCM = 5 22829371c9d4SSatish Balay } MatSTRUMPACKReordering; 22832ef1f0ffSBarry Smith 228434f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering); 2285575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool); 228634f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSRelTol(Mat, PetscReal); 2287edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSTRUMPACKSetHSSRelTol()", ) static inline PetscErrorCode MatSTRUMPACKSetHSSRelCompTol(Mat mat, PetscReal rtol) 2288d71ae5a4SJacob Faibussowitsch { 22899371c9d4SSatish Balay return MatSTRUMPACKSetHSSRelTol(mat, rtol); 22909371c9d4SSatish Balay } 229134f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSAbsTol(Mat, PetscReal); 229234f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMinSepSize(Mat, PetscInt); 2293edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSTRUMPACKSetHSSMinSepSize()", ) static inline PetscErrorCode MatSTRUMPACKSetHSSMinSize(Mat mat, PetscInt hssminsize) 2294d71ae5a4SJacob Faibussowitsch { 22959371c9d4SSatish Balay return MatSTRUMPACKSetHSSMinSepSize(mat, hssminsize); 22969371c9d4SSatish Balay } 229734f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMaxRank(Mat, PetscInt); 2298a36bf211SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSLeafSize(Mat, PetscInt); 2299575704cbSPieter Ghysels #endif 2300575704cbSPieter Ghysels 2301b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool); 23022216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *); 2303edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 13, 0, "MatBindToCPU()", ) static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg) 2304d71ae5a4SJacob Faibussowitsch { 23059371c9d4SSatish Balay return MatBindToCPU(A, flg); 23069371c9d4SSatish Balay } 230765a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool); 2308e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *); 2309e7e92044SBarry Smith 2310aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA 23113f9c0db1SPaul Mullowney /*E 23122ef1f0ffSBarry Smith MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU) 23132692e278SPaul Mullowney matrices. 2314e057df02SPaul Mullowney 23152ef1f0ffSBarry Smith Values: 231687497f52SBarry Smith + `MAT_CUSPARSE_CSR` - Compressed Sparse Row 231787497f52SBarry Smith . `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later). 231887497f52SBarry Smith - `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later). 2319e057df02SPaul Mullowney 2320e057df02SPaul Mullowney Level: intermediate 2321e057df02SPaul Mullowney 23221cc06b55SBarry Smith .seealso: [](ch_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation` 2323e057df02SPaul Mullowney E*/ 2324e057df02SPaul Mullowney 23259371c9d4SSatish Balay typedef enum { 23269371c9d4SSatish Balay MAT_CUSPARSE_CSR, 23279371c9d4SSatish Balay MAT_CUSPARSE_ELL, 23289371c9d4SSatish Balay MAT_CUSPARSE_HYB 23299371c9d4SSatish Balay } MatCUSPARSEStorageFormat; 2330e057df02SPaul Mullowney 2331e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */ 2332e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[]; 2333e057df02SPaul Mullowney 23343f9c0db1SPaul Mullowney /*E 23352ef1f0ffSBarry Smith MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU) 23362692e278SPaul Mullowney matrices whose operation should use a particular storage format. 2337e057df02SPaul Mullowney 23382ef1f0ffSBarry Smith Values: 233987497f52SBarry Smith + `MAT_CUSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel MatMult 234087497f52SBarry Smith . `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel MatMult 234187497f52SBarry Smith . `MAT_CUSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) MatMult 23422ef1f0ffSBarry Smith - `MAT_CUSPARSE_ALL` - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices 2343e057df02SPaul Mullowney 2344e057df02SPaul Mullowney Level: intermediate 2345e057df02SPaul Mullowney 23461cc06b55SBarry Smith .seealso: [](ch_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat` 2347e057df02SPaul Mullowney E*/ 23489371c9d4SSatish Balay typedef enum { 23499371c9d4SSatish Balay MAT_CUSPARSE_MULT_DIAG, 23509371c9d4SSatish Balay MAT_CUSPARSE_MULT_OFFDIAG, 23519371c9d4SSatish Balay MAT_CUSPARSE_MULT, 23529371c9d4SSatish Balay MAT_CUSPARSE_ALL 23539371c9d4SSatish Balay } MatCUSPARSEFormatOperation; 2354e057df02SPaul Mullowney 235510e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 235610e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2357e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat); 2358365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool); 23595f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 23605f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 23615f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **); 23625f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **); 23635f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **); 23645f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **); 23655f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **); 23665f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **); 2367637a0070SStefano Zampini 2368637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 2369637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 2370637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **); 2371637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **); 2372637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **); 2373637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **); 2374637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **); 2375637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **); 2376637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *); 2377d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *); 2378637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat); 23793d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *); 23802d1451d4SHong Zhang 23812d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 23822d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 23839ae82921SPaul Mullowney #endif 23849ae82921SPaul Mullowney 238547d993e7Ssuyashtn #ifdef PETSC_HAVE_HIP 238647d993e7Ssuyashtn /*E 23872ef1f0ffSBarry Smith MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU) 238847d993e7Ssuyashtn matrices. 238947d993e7Ssuyashtn 23902ef1f0ffSBarry Smith Values: 23912ef1f0ffSBarry Smith + `MAT_HIPSPARSE_CSR` - Compressed Sparse Row 23922ef1f0ffSBarry Smith . `MAT_HIPSPARSE_ELL` - Ellpack 23932ef1f0ffSBarry Smith - `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format 239447d993e7Ssuyashtn 239516a05f60SBarry Smith Level: intermediate 239616a05f60SBarry Smith 23971cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation` 239847d993e7Ssuyashtn E*/ 239947d993e7Ssuyashtn 240047d993e7Ssuyashtn typedef enum { 240147d993e7Ssuyashtn MAT_HIPSPARSE_CSR, 240247d993e7Ssuyashtn MAT_HIPSPARSE_ELL, 240347d993e7Ssuyashtn MAT_HIPSPARSE_HYB 240447d993e7Ssuyashtn } MatHIPSPARSEStorageFormat; 240547d993e7Ssuyashtn 240647d993e7Ssuyashtn /* these will be strings associated with enumerated type defined above */ 240747d993e7Ssuyashtn PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[]; 240847d993e7Ssuyashtn 240947d993e7Ssuyashtn /*E 24102ef1f0ffSBarry Smith MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU) 241147d993e7Ssuyashtn matrices whose operation should use a particular storage format. 241247d993e7Ssuyashtn 24132ef1f0ffSBarry Smith Values: 24142ef1f0ffSBarry Smith + `MAT_HIPSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()` 2415eb495b2aSPierre Jolivet . `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel `MatMult()` 24162ef1f0ffSBarry Smith . `MAT_HIPSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()` 24172ef1f0ffSBarry Smith - `MAT_HIPSPARSE_ALL` - sets the storage format for all HIPSPARSE (GPU) matrices 24182ef1f0ffSBarry Smith 241916a05f60SBarry Smith Level: intermediate 242016a05f60SBarry Smith 24211cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat` 242247d993e7Ssuyashtn E*/ 242347d993e7Ssuyashtn typedef enum { 242447d993e7Ssuyashtn MAT_HIPSPARSE_MULT_DIAG, 242547d993e7Ssuyashtn MAT_HIPSPARSE_MULT_OFFDIAG, 242647d993e7Ssuyashtn MAT_HIPSPARSE_MULT, 242747d993e7Ssuyashtn MAT_HIPSPARSE_ALL 242847d993e7Ssuyashtn } MatHIPSPARSEFormatOperation; 242947d993e7Ssuyashtn 243047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 243147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 243247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat); 243347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool); 243447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 243547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 243647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **); 243747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **); 243847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **); 243947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **); 244047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **); 244147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **); 244247d993e7Ssuyashtn 244347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 244447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 244547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **); 244647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **); 244747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **); 244847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **); 244947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **); 245047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **); 245147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *); 245247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *); 245347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat); 24543d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *); 245547d993e7Ssuyashtn #endif 245647d993e7Ssuyashtn 2457d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL) 2458d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2459d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2460d67ff14aSKarl Rupp #endif 2461d67ff14aSKarl Rupp 2462*4bf303faSJacob Faibussowitsch #if PetscDefined(HAVE_KOKKOS) 2463*4bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2464*4bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2465*4bf303faSJacob Faibussowitsch #endif 2466*4bf303faSJacob Faibussowitsch 246754efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW) 2468014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec); 2469014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec); 24702a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *); 247154efbe56SHong Zhang #endif 247254efbe56SHong Zhang 2473d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 2474d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2475d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt); 2476d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *); 2477d24d4204SJose E. Roman #endif 2478d24d4204SJose E. Roman 2479014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *); 2480014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *); 2481014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]); 2482014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]); 2483014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***); 2484014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *); 248519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType); 2486014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]); 2487014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat); 2488d8588912SDave May 24892ce66baaSPierre Jolivet PETSC_EXTERN PetscErrorCode MatFilter(Mat, PetscReal, PetscBool, PetscBool); 24902ce66baaSPierre Jolivet PETSC_DEPRECATED_FUNCTION(3, 20, 0, "MatFilter()", ) static inline PetscErrorCode MatChop(Mat A, PetscReal tol) 24912ce66baaSPierre Jolivet { 24922ce66baaSPierre Jolivet return MatFilter(A, tol, PETSC_FALSE, PETSC_FALSE); 24932ce66baaSPierre Jolivet } 2494e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *); 24954325cce7SMatthew G Knepley 2496b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **); 249753dd7562SDmitry Karpeev 2498c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat); 2499c094ef40SMatthew G. Knepley 2500539c167fSBarry Smith PETSC_INTERN PetscErrorCode MatHeaderMerge(Mat, Mat *); 2501539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *); 25021a2c6b5cSJunchao Zhang 25037ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *); 250472833a62Smarkadams4 25052d776b49SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, Mat *); 250658c11ad4SPierre Jolivet PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat, PetscBool); 2507ad6ad4e1SHansol Suh 2508d16ceb75SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *); 250923a5497aSJed Brown #endif 2510