xref: /petsc/include/petscmat.h (revision 4f58015e5b963ff70f3b7a63a399e8a46849015e)
12eac72dbSBarry Smith /*
22eac72dbSBarry Smith      Include file for the matrix component of PETSc
32eac72dbSBarry Smith */
4a4963045SJacob Faibussowitsch #pragma once
5ac09b921SBarry Smith 
62c8e378dSBarry Smith #include <petscvec.h>
72eac72dbSBarry Smith 
8ac09b921SBarry Smith /* SUBMANSEC = Mat */
9ac09b921SBarry Smith 
10d9274352SBarry Smith /*S
118f6c3df8SBarry Smith    Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without
12af27ebaaSBarry Smith          an explicit sparse representation (such as matrix-free operators). Also used to hold representations of graphs
13af27ebaaSBarry Smith          for graph operations such as coloring, `MatColoringCreate()`
142eac72dbSBarry Smith 
15d91e6319SBarry Smith    Level: beginner
16d91e6319SBarry Smith 
172ef1f0ffSBarry Smith    Note:
181cc06b55SBarry Smith    See [](doc_matrix), [](ch_matrices) and `MatType` for available matrix types
192ef1f0ffSBarry Smith 
201cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()`
21d9274352SBarry Smith S*/
22d9274352SBarry Smith typedef struct _p_Mat *Mat;
23d9274352SBarry Smith 
2476bdecfbSBarry Smith /*J
258f6c3df8SBarry Smith    MatType - String with the name of a PETSc matrix type
26d9274352SBarry Smith 
27d9274352SBarry Smith    Level: beginner
28d9274352SBarry Smith 
292ef1f0ffSBarry Smith    Note:
302ef1f0ffSBarry Smith    [](doc_matrix) for a table of available matrix types
312ef1f0ffSBarry Smith 
321cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()`
3376bdecfbSBarry Smith J*/
3419fd82e9SBarry Smith typedef const char *MatType;
35273d9f13SBarry Smith #define MATSAME                      "same"
365a11e1b2SBarry Smith #define MATMAIJ                      "maij"
37273d9f13SBarry Smith #define MATSEQMAIJ                   "seqmaij"
38273d9f13SBarry Smith #define MATMPIMAIJ                   "mpimaij"
3949bd79ccSDebojyoti Ghosh #define MATKAIJ                      "kaij"
4049bd79ccSDebojyoti Ghosh #define MATSEQKAIJ                   "seqkaij"
4149bd79ccSDebojyoti Ghosh #define MATMPIKAIJ                   "mpikaij"
42273d9f13SBarry Smith #define MATIS                        "is"
435a11e1b2SBarry Smith #define MATAIJ                       "aij"
44273d9f13SBarry Smith #define MATSEQAIJ                    "seqaij"
45273d9f13SBarry Smith #define MATMPIAIJ                    "mpiaij"
465a11e1b2SBarry Smith #define MATAIJCRL                    "aijcrl"
475a11e1b2SBarry Smith #define MATSEQAIJCRL                 "seqaijcrl"
485a11e1b2SBarry Smith #define MATMPIAIJCRL                 "mpiaijcrl"
499ae82921SPaul Mullowney #define MATAIJCUSPARSE               "aijcusparse"
509ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE            "seqaijcusparse"
519ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE            "mpiaijcusparse"
5247d993e7Ssuyashtn #define MATAIJHIPSPARSE              "aijhipsparse"
5347d993e7Ssuyashtn #define MATSEQAIJHIPSPARSE           "seqaijhipsparse"
5447d993e7Ssuyashtn #define MATMPIAIJHIPSPARSE           "mpiaijhipsparse"
558c3ff71bSJunchao Zhang #define MATAIJKOKKOS                 "aijkokkos"
568c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS              "seqaijkokkos"
578c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS              "mpiaijkokkos"
58d67ff14aSKarl Rupp #define MATAIJVIENNACL               "aijviennacl"
59d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL            "seqaijviennacl"
60d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL            "mpiaijviennacl"
615a11e1b2SBarry Smith #define MATAIJPERM                   "aijperm"
625a11e1b2SBarry Smith #define MATSEQAIJPERM                "seqaijperm"
635a11e1b2SBarry Smith #define MATMPIAIJPERM                "mpiaijperm"
644dfdc2d9SRichard Tran Mills #define MATAIJSELL                   "aijsell"
654dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL                "seqaijsell"
664dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL                "mpiaijsell"
674a2a386eSRichard Tran Mills #define MATAIJMKL                    "aijmkl"
684a2a386eSRichard Tran Mills #define MATSEQAIJMKL                 "seqaijmkl"
694a2a386eSRichard Tran Mills #define MATMPIAIJMKL                 "mpiaijmkl"
70b5b72c8aSIrina Sokolova #define MATBAIJMKL                   "baijmkl"
71b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL                "seqbaijmkl"
72b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL                "mpibaijmkl"
73273d9f13SBarry Smith #define MATSHELL                     "shell"
74c1fff1c6SRichard Tran Mills #define MATCENTERING                 "centering"
755a11e1b2SBarry Smith #define MATDENSE                     "dense"
76637a0070SStefano Zampini #define MATDENSECUDA                 "densecuda"
7747d993e7Ssuyashtn #define MATDENSEHIP                  "densehip"
78209238afSKris Buschelman #define MATSEQDENSE                  "seqdense"
79bfc799aaSStefano Zampini #define MATSEQDENSECUDA              "seqdensecuda"
8047d993e7Ssuyashtn #define MATSEQDENSEHIP               "seqdensehip"
81273d9f13SBarry Smith #define MATMPIDENSE                  "mpidense"
82637a0070SStefano Zampini #define MATMPIDENSECUDA              "mpidensecuda"
8347d993e7Ssuyashtn #define MATMPIDENSEHIP               "mpidensehip"
84db31f6deSJed Brown #define MATELEMENTAL                 "elemental"
85d24d4204SJose E. Roman #define MATSCALAPACK                 "scalapack"
865a11e1b2SBarry Smith #define MATBAIJ                      "baij"
87273d9f13SBarry Smith #define MATSEQBAIJ                   "seqbaij"
88273d9f13SBarry Smith #define MATMPIBAIJ                   "mpibaij"
89273d9f13SBarry Smith #define MATMPIADJ                    "mpiadj"
905a11e1b2SBarry Smith #define MATSBAIJ                     "sbaij"
91273d9f13SBarry Smith #define MATSEQSBAIJ                  "seqsbaij"
92273d9f13SBarry Smith #define MATMPISBAIJ                  "mpisbaij"
93cebc7f6cSBarry Smith #define MATMFFD                      "mffd"
94c8a8475eSBarry Smith #define MATNORMAL                    "normal"
95c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN           "normalh"
96ab92ecdeSBarry Smith #define MATLRC                       "lrc"
972a6744ebSBarry Smith #define MATSCATTER                   "scatter"
98421e10b8SBarry Smith #define MATBLOCKMAT                  "blockmat"
99793850ffSBarry Smith #define MATCOMPOSITE                 "composite"
1001f8c7532SHong Zhang #define MATFFT                       "fft"
1011f8c7532SHong Zhang #define MATFFTW                      "fftw"
102e133240eSMatthew G Knepley #define MATSEQCUFFT                  "seqcufft"
10347d993e7Ssuyashtn #define MATSEQHIPFFT                 "seqhipfft"
104edd03b47SJacob Faibussowitsch #define MATTRANSPOSEMAT              PETSC_DEPRECATED_MACRO(3, 18, 0, "MATTRANSPOSEVIRTUAL", ) "transpose"
105013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL          "transpose"
106013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose"
10772ca8751SBarry Smith #define MATSCHURCOMPLEMENT           "schurcomplement"
1081d6018f0SLisandro Dalcin #define MATPYTHON                    "python"
10963c07aadSStefano Zampini #define MATHYPRE                     "hypre"
110f91d8e95SBarry Smith #define MATHYPRESTRUCT               "hyprestruct"
111a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT              "hypresstruct"
112ee1cef2cSJed Brown #define MATSUBMATRIX                 "submatrix"
1132c0dbf93SJed Brown #define MATLOCALREF                  "localref"
114d8588912SDave May #define MATNEST                      "nest"
115c094ef40SMatthew G. Knepley #define MATPREALLOCATOR              "preallocator"
116d4002b98SHong Zhang #define MATSELL                      "sell"
117d4002b98SHong Zhang #define MATSEQSELL                   "seqsell"
118d4002b98SHong Zhang #define MATMPISELL                   "mpisell"
1192d1451d4SHong Zhang #define MATSELLCUDA                  "sellcuda"
1202d1451d4SHong Zhang #define MATSEQSELLCUDA               "seqsellcuda"
1212d1451d4SHong Zhang #define MATMPISELLCUDA               "mpisellcuda"
122a3b2e22bSHong Zhang #define MATDUMMY                     "dummy"
123cd929ea3SAlp Dener #define MATLMVM                      "lmvm"
12478e4361aSAlp Dener #define MATLMVMDFP                   "lmvmdfp"
12578e4361aSAlp Dener #define MATLMVMBFGS                  "lmvmbfgs"
12678e4361aSAlp Dener #define MATLMVMSR1                   "lmvmsr1"
127864588a7SAlp Dener #define MATLMVMBROYDEN               "lmvmbroyden"
128864588a7SAlp Dener #define MATLMVMBADBROYDEN            "lmvmbadbroyden"
129864588a7SAlp Dener #define MATLMVMSYMBROYDEN            "lmvmsymbroyden"
130864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN         "lmvmsymbadbroyden"
131864588a7SAlp Dener #define MATLMVMDIAGBROYDEN           "lmvmdiagbroyden"
1323423f386SBarry Smith #define MATCONSTANTDIAGONAL          "constantdiagonal"
133345a4b08SToby Isaac #define MATDIAGONAL                  "diagonal"
134c7a4214aSPierre Jolivet #define MATHTOOL                     "htool"
13553022affSStefano Zampini #define MATH2OPUS                    "h2opus"
136773941d6SBarry Smith 
13776bdecfbSBarry Smith /*J
138af27ebaaSBarry Smith    MatSolverType - String with the name of a PETSc factorization-based matrix solver type.
1399989ab13SBarry Smith 
140c2b89b5dSBarry Smith    For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc
1419989ab13SBarry Smith 
1429989ab13SBarry Smith    Level: beginner
1439989ab13SBarry Smith 
1442ef1f0ffSBarry Smith    Note:
14516a05f60SBarry Smith    `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as
14616a05f60SBarry Smith    a ./configure option to install them
147c7ccbb75SBarry Smith 
1481cc06b55SBarry Smith .seealso: [](sec_matfactor), [](ch_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()`
14976bdecfbSBarry Smith J*/
150ea799195SBarry Smith typedef const char *MatSolverType;
1512692d6eeSBarry Smith #define MATSOLVERSUPERLU      "superlu"
1522692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST "superlu_dist"
15308f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK    "strumpack"
1542692d6eeSBarry Smith #define MATSOLVERUMFPACK      "umfpack"
15520db9a53SJed Brown #define MATSOLVERCHOLMOD      "cholmod"
156d89f5e7aSBarry Smith #define MATSOLVERKLU          "klu"
157d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL    "elemental"
158d24d4204SJose E. Roman #define MATSOLVERSCALAPACK    "scalapack"
1592692d6eeSBarry Smith #define MATSOLVERESSL         "essl"
1602692d6eeSBarry Smith #define MATSOLVERLUSOL        "lusol"
1612692d6eeSBarry Smith #define MATSOLVERMUMPS        "mumps"
162d615f992SSatish Balay #define MATSOLVERMKL_PARDISO  "mkl_pardiso"
163d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO "mkl_cpardiso"
1642692d6eeSBarry Smith #define MATSOLVERPASTIX       "pastix"
1652692d6eeSBarry Smith #define MATSOLVERMATLAB       "matlab"
1662692d6eeSBarry Smith #define MATSOLVERPETSC        "petsc"
1672692d6eeSBarry Smith #define MATSOLVERBAS          "bas"
1689ae82921SPaul Mullowney #define MATSOLVERCUSPARSE     "cusparse"
169bfc799aaSStefano Zampini #define MATSOLVERCUDA         "cuda"
17047d993e7Ssuyashtn #define MATSOLVERHIPSPARSE    "hipsparse"
17147d993e7Ssuyashtn #define MATSOLVERHIP          "hip"
172930e68a5SMark Adams #define MATSOLVERKOKKOS       "kokkos"
173a2fc1e05SToby Isaac #define MATSOLVERSPQR         "spqr"
174c0cdd4a1SDahai Guo 
175b24902e0SBarry Smith /*E
176b24902e0SBarry Smith     MatFactorType - indicates what type of factorization is requested
177b24902e0SBarry Smith 
1782ef1f0ffSBarry Smith     Values:
1792ef1f0ffSBarry Smith +  `MAT_FACTOR_LU`       - LU factorization
1802ef1f0ffSBarry Smith .  `MAT_FACTOR_CHOLESKY` - Cholesky factorization
1812ef1f0ffSBarry Smith .  `MAT_FACTOR_ILU`      - ILU factorization
1822ef1f0ffSBarry Smith .  `MAT_FACTOR_ICC`      - incomplete Cholesky factorization
1832ef1f0ffSBarry Smith .  `MAT_FACTOR_ILUDT`    - ILU factorization with drop tolerance
1842ef1f0ffSBarry Smith -  `MAT_FACTOR_QR`       - QR factorization
185b24902e0SBarry Smith 
18616a05f60SBarry Smith     Level: beginner
18716a05f60SBarry Smith 
1881cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()`
189b24902e0SBarry Smith E*/
1909371c9d4SSatish Balay typedef enum {
1919371c9d4SSatish Balay   MAT_FACTOR_NONE,
1929371c9d4SSatish Balay   MAT_FACTOR_LU,
1939371c9d4SSatish Balay   MAT_FACTOR_CHOLESKY,
1949371c9d4SSatish Balay   MAT_FACTOR_ILU,
1959371c9d4SSatish Balay   MAT_FACTOR_ICC,
1969371c9d4SSatish Balay   MAT_FACTOR_ILUDT,
1979371c9d4SSatish Balay   MAT_FACTOR_QR,
1989371c9d4SSatish Balay   MAT_FACTOR_NUM_TYPES
1999371c9d4SSatish Balay } MatFactorType;
200014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[];
201e92e720dSBarry Smith 
202ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *);
203ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *);
204f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *);
205edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 15, 0, "MatFactorGetCanUseOrdering()", ) static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b)
206d71ae5a4SJacob Faibussowitsch {
2079371c9d4SSatish Balay   return MatFactorGetCanUseOrdering(A, b);
2089371c9d4SSatish Balay }
209ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *);
210014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *);
2117abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType);
2128434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode(MatSolverFn)(Mat, MatFactorType, Mat *);
2138434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatSolverFn *MatSolverFunction;
21407e0ed13SBarry Smith 
2158434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFn *);
2168434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFn **);
217edd03b47SJacob Faibussowitsch typedef MatSolverType       MatSolverPackage PETSC_DEPRECATED_TYPEDEF(3, 9, 0, "MatSolverType", );
2188434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeRegister()", ) static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFn *f)
219d71ae5a4SJacob Faibussowitsch {
2209371c9d4SSatish Balay   return MatSolverTypeRegister(stype, mtype, ftype, f);
2219371c9d4SSatish Balay }
2228434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeGet()", ) static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFn **f)
223d71ae5a4SJacob Faibussowitsch {
2249371c9d4SSatish Balay   return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f);
2259371c9d4SSatish Balay }
2269989ab13SBarry Smith 
2274222ddf1SHong Zhang /*E
22895bd0b28SBarry Smith     MatProductType - indicates what type of matrix product to compute
2294222ddf1SHong Zhang 
2302ef1f0ffSBarry Smith     Values:
2312ef1f0ffSBarry Smith +  `MATPRODUCT_AB`   - product of two matrices
2322ef1f0ffSBarry Smith .  `MATPRODUCT_AtB`  - product of the transpose of a given matrix with a matrix
2332ef1f0ffSBarry Smith .  `MATPRODUCT_ABt`  - product of a matrix with the transpose of another given matrix
2342ef1f0ffSBarry Smith .  `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself
2352ef1f0ffSBarry Smith .  `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix
2362ef1f0ffSBarry Smith -  `MATPRODUCT_ABC`  - the product of three matrices
2372ef1f0ffSBarry Smith 
23816a05f60SBarry Smith     Level: beginner
23916a05f60SBarry Smith 
2401cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatProductSetType()`
2414222ddf1SHong Zhang E*/
2429371c9d4SSatish Balay typedef enum {
2439371c9d4SSatish Balay   MATPRODUCT_UNSPECIFIED = 0,
2449371c9d4SSatish Balay   MATPRODUCT_AB,
2459371c9d4SSatish Balay   MATPRODUCT_AtB,
2469371c9d4SSatish Balay   MATPRODUCT_ABt,
2479371c9d4SSatish Balay   MATPRODUCT_PtAP,
2489371c9d4SSatish Balay   MATPRODUCT_RARt,
2499371c9d4SSatish Balay   MATPRODUCT_ABC
2509371c9d4SSatish Balay } MatProductType;
251544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[];
2524222ddf1SHong Zhang 
2534222ddf1SHong Zhang /*J
2544222ddf1SHong Zhang     MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation
2554222ddf1SHong Zhang 
2564222ddf1SHong Zhang    Level: beginner
2574222ddf1SHong Zhang 
2581cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType`
2594222ddf1SHong Zhang J*/
2604222ddf1SHong Zhang typedef const char *MatProductAlgorithm;
2613e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT         "default"
2623e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED          "sorted"
2633e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE        "scalable"
2643e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST    "scalable_fast"
2653e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP            "heap"
2663e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP           "btheap"
2673e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED     "llcondensed"
2683e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE        "rowmerge"
2693e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT    "outerproduct"
2703e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB             "at*b"
2713e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP             "rap"
2723e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE     "nonscalable"
2733e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI          "seqmpi"
2743e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND         "backend"
2753e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING     "overlapping"
2763e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED          "merged"
2773e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE       "allatonce"
2783e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged"
2793e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV      "allgatherv"
2803e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC          "cyclic"
2813e662e0bSHong Zhang #if defined(PETSC_HAVE_HYPRE)
2823e662e0bSHong Zhang   #define MATPRODUCTALGORITHMHYPRE "hypre"
2833e662e0bSHong Zhang #endif
2844222ddf1SHong Zhang 
2854222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *);
2864222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat);
2874222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType);
2884222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm);
2898fcac130SJose E. Roman PETSC_EXTERN PetscErrorCode MatProductGetAlgorithm(Mat, MatProductAlgorithm *);
2904222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal);
2914222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat);
2924222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat);
2934222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat);
2944222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat);
2954417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat);
2966718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer);
297c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *);
298c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *);
2994222ddf1SHong Zhang 
300c06d978dSMatthew Knepley /* Logging support */
3010700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */
302014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID;
303335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID;
304014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID;
305014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID;
306014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID;
307014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID;
308014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID;
309014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID;
310c06d978dSMatthew Knepley 
311ceb03754SKris Buschelman /*E
3122ef1f0ffSBarry Smith    MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions
313cf37664fSBarry Smith    are to be reused to store the new matrix values.
314cf37664fSBarry Smith 
3152ef1f0ffSBarry Smith    Values:
3162ef1f0ffSBarry Smith +  `MAT_INITIAL_MATRIX` - create a new matrix
3172ef1f0ffSBarry Smith .  `MAT_REUSE_MATRIX`   - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX`
3182ef1f0ffSBarry Smith .  `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions)
3192ef1f0ffSBarry Smith -  `MAT_IGNORE_MATRIX`  - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions)
320ceb03754SKris Buschelman 
321ceb03754SKris Buschelman     Level: beginner
322ceb03754SKris Buschelman 
3231cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()`
324ceb03754SKris Buschelman E*/
3259371c9d4SSatish Balay typedef enum {
3269371c9d4SSatish Balay   MAT_INITIAL_MATRIX,
3279371c9d4SSatish Balay   MAT_REUSE_MATRIX,
3289371c9d4SSatish Balay   MAT_IGNORE_MATRIX,
3299371c9d4SSatish Balay   MAT_INPLACE_MATRIX
3309371c9d4SSatish Balay } MatReuse;
331ceb03754SKris Buschelman 
3325494a064SHong Zhang /*E
3332ef1f0ffSBarry Smith     MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()`
3342ef1f0ffSBarry Smith     include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`.
3355494a064SHong Zhang 
3362ef1f0ffSBarry Smith     Values:
3372ef1f0ffSBarry Smith +  `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values
3382ef1f0ffSBarry Smith -  `MAT_GET_VALUES`        - copy the matrix values
3392ef1f0ffSBarry Smith 
34095bd0b28SBarry Smith     Level: developer
34195bd0b28SBarry Smith 
3422ef1f0ffSBarry Smith     Developer Note:
3432ef1f0ffSBarry Smith     Why is not just a boolean used for this information?
3442ef1f0ffSBarry Smith 
3451cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()`
3465494a064SHong Zhang E*/
3479371c9d4SSatish Balay typedef enum {
3489371c9d4SSatish Balay   MAT_DO_NOT_GET_VALUES,
3499371c9d4SSatish Balay   MAT_GET_VALUES
3509371c9d4SSatish Balay } MatCreateSubMatrixOption;
3515494a064SHong Zhang 
352607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void);
3534bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatFinalizePackage(void);
354c06d978dSMatthew Knepley 
355014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *);
35677433607SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFromOptions(MPI_Comm, const char *, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
357014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt);
35819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType);
3590d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *);
3600d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType);
361014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat);
362fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]);
363bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat));
36423bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]);
365014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]);
36626cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]);
36726cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]);
368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]);
369014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]);
37084d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool);
371f69a0ea3SMatthew Knepley 
372140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList;
373140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList;
374140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList;
37528988994SBarry Smith 
3763b224e63SBarry Smith /*E
377aa6c7ce3SBarry Smith    MatStructure - Indicates if two matrices have the same nonzero structure
3783b224e63SBarry Smith 
3792ef1f0ffSBarry Smith    Values:
3802ef1f0ffSBarry Smith +  `SAME_NONZERO_PATTERN`      - the two matrices have identical nonzero patterns
3812ef1f0ffSBarry Smith .  `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns
3822ef1f0ffSBarry Smith .  `SUBSET_NONZERO_PATTERN`    - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix
3832ef1f0ffSBarry Smith -  `UNKNOWN_NONZERO_PATTERN`   - there is no known relationship between the nonzero patterns. In this case the implementations
3842ef1f0ffSBarry Smith                                  may try to detect a relationship to optimize the operation
385531d0c6aSBarry Smith 
38616a05f60SBarry Smith    Level: beginner
38716a05f60SBarry Smith 
388af27ebaaSBarry Smith    Note:
389af27ebaaSBarry Smith    Certain matrix operations (such as `MatAXPY()`) can run much faster if the sparsity pattern of the matrices are the same. But actually determining if
390af27ebaaSBarry Smith    the patterns are the same may be costly. This provides a way for users who know something about the sparsity patterns to provide this information
391af27ebaaSBarry Smith    to certain PETSc routines.
392af27ebaaSBarry Smith 
3931cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()`
3943b224e63SBarry Smith E*/
3959371c9d4SSatish Balay typedef enum {
3969371c9d4SSatish Balay   DIFFERENT_NONZERO_PATTERN,
3979371c9d4SSatish Balay   SUBSET_NONZERO_PATTERN,
3989371c9d4SSatish Balay   SAME_NONZERO_PATTERN,
3999371c9d4SSatish Balay   UNKNOWN_NONZERO_PATTERN
4009371c9d4SSatish Balay } MatStructure;
401d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[];
4023b224e63SBarry Smith 
4039779e05dSSatish Balay #if defined PETSC_HAVE_MKL_SPARSE
404ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
405ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
40680095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
407ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
40880095d54SIrina Sokolova #endif
409cd929ea3SAlp Dener 
4104bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
4114bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
4124bf303faSJacob Faibussowitsch 
413d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
414d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
415d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]);
416d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
41707e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *);
41807e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *);
41907e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *);
42007e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt);
421b921024eSHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *);
42280095d54SIrina Sokolova 
4234bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
4244bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
425fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
426fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetSeqSELL(Mat, Mat *, Mat *, const PetscInt *[]);
4274bf303faSJacob Faibussowitsch 
428014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
429014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
430014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
431014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
432014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4338f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4346a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]);
435014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *);
4363b00a383SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *);
4373b00a383SHong Zhang 
438014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
439014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
440014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4417e8381f9SStefano Zampini 
442e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]);
44382a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]);
4447e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode);
445d21a29f3SJed Brown 
446014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *);
447014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
448d21a29f3SJed Brown 
449014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
450014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
45138f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
452014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4534cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]);
454dfb205c3SBarry Smith 
455014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *);
456c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *);
457014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *);
458c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *);
459986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *);
460267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *);
461bcf2175cSMatthew Knepley PETSC_EXTERN PetscErrorCode MatLRCSetMats(Mat, Mat, Mat, Vec, Mat);
462c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *);
463014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
464014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
465c0cdd4a1SDahai Guo 
466014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *);
467014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter);
468014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *);
469014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *);
470014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat);
471014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat);
4729371c9d4SSatish Balay typedef enum {
4739371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_RIGHT,
4749371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_LEFT
4759371c9d4SSatish Balay } MatCompositeMergeType;
4768c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType);
477014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *);
4780da935d5SPierre Jolivet /*E
4790da935d5SPierre Jolivet     MatCompositeType - indicates what type of `MATCOMPOSITE` is used
4800da935d5SPierre Jolivet 
4810da935d5SPierre Jolivet     Values:
4820da935d5SPierre Jolivet +  `MAT_COMPOSITE_ADDITIVE`       - sum of matrices (default)
4830da935d5SPierre Jolivet -  `MAT_COMPOSITE_MULTIPLICATIVE` - product of matrices
4840da935d5SPierre Jolivet 
4850da935d5SPierre Jolivet     Level: beginner
4860da935d5SPierre Jolivet 
4870da935d5SPierre Jolivet .seealso: [](ch_matrices), `MATCOMPOSITE`, `MatCompositeSetType()`, `MatCompositeGetType()`
4880da935d5SPierre Jolivet E*/
4899371c9d4SSatish Balay typedef enum {
4909371c9d4SSatish Balay   MAT_COMPOSITE_ADDITIVE,
4919371c9d4SSatish Balay   MAT_COMPOSITE_MULTIPLICATIVE
4929371c9d4SSatish Balay } MatCompositeType;
493014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType);
4946dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *);
4953b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure);
4963b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *);
4976d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *);
4988b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *);
49903049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *);
5006d7c1e57SBarry Smith 
50119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *);
502014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *);
503dedccee8SHong Zhang 
504014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *);
5058060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *);
506d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *);
50706511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *);
508fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *);
50965f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *);
51054e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *);
51154e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS);
512014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *);
5133423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *);
514345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatCreateDiagonal(Vec, Mat *);
515345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetDiagonal(Mat, Vec *);
516345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreDiagonal(Mat, Vec *);
517345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetInverseDiagonal(Mat, Vec *);
518345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreInverseDiagonal(Mat, Vec *);
5191472f72bSBarry Smith 
520978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE)
521d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
522978814f1SStefano Zampini #endif
523978814f1SStefano Zampini 
524014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]);
525ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]);
5261d6018f0SLisandro Dalcin 
527846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat);
528014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat);
529014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *);
530e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *);
53121c89e3eSBarry Smith 
532014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat);
533014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat);
534014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat);
535014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *);
536014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *);
537713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **);
5380da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *);
539479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat);
5408a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *);
54120c04d79SPierre Jolivet PETSC_EXTERN PetscErrorCode MatComputeVariableBlockEnvelope(Mat);
54299cafbc1SBarry Smith 
543014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
5448a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode);
545014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
546014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]);
547014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]);
548014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]);
54973a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom);
55084cb2905SBarry Smith 
5512ef4de8bSBarry Smith /*S
5522ef1f0ffSBarry Smith    MatStencil - Data structure (C struct) for storing information about rows and
5532ef1f0ffSBarry Smith    columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()`
55462ef0227SBarry Smith 
5552ef1f0ffSBarry Smith    Level: beginner
5562ef1f0ffSBarry Smith 
5572ef1f0ffSBarry Smith    Notes:
55862ef0227SBarry Smith    The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored).
55915229ffcSPierre Jolivet    The c represents the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored.
56062ef0227SBarry Smith 
56187497f52SBarry Smith    For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`.
562be479b30SJed Brown 
5632ef1f0ffSBarry Smith    For staggered grids, see `DMStagStencil`
5642ef4de8bSBarry Smith 
5652ef1f0ffSBarry Smith    Fortran Note:
5662ef1f0ffSBarry Smith    See `MatSetValuesStencil()` for details.
5672ef4de8bSBarry Smith 
5681cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`,
5692ef1f0ffSBarry Smith           `DMStagStencil`
5702ef4de8bSBarry Smith S*/
571435da068SBarry Smith typedef struct {
572c1ac3661SBarry Smith   PetscInt k, j, i, c;
573435da068SBarry Smith } MatStencil;
5742ef4de8bSBarry Smith 
575014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
576014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
577014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt);
578435da068SBarry Smith 
579d91e6319SBarry Smith /*E
5802ef1f0ffSBarry Smith     MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use
581d91e6319SBarry Smith 
5822ef1f0ffSBarry Smith     Values:
5832ef1f0ffSBarry Smith +   `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix
5842ef1f0ffSBarry Smith -   `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted
5852ef1f0ffSBarry Smith 
58616a05f60SBarry Smith     Level: beginner
58716a05f60SBarry Smith 
5881cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()`
589d91e6319SBarry Smith E*/
5909371c9d4SSatish Balay typedef enum {
5919371c9d4SSatish Balay   MAT_FLUSH_ASSEMBLY = 1,
5929371c9d4SSatish Balay   MAT_FINAL_ASSEMBLY = 0
5939371c9d4SSatish Balay } MatAssemblyType;
594*4f58015eSStefano Zampini 
595014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType);
596014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType);
597014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *);
5984f9c727eSBarry Smith 
599d91e6319SBarry Smith /*E
6002ef1f0ffSBarry Smith    MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage
601d91e6319SBarry Smith 
602d91e6319SBarry Smith    Level: beginner
603d91e6319SBarry Smith 
6042ef1f0ffSBarry Smith    Note:
6052ef1f0ffSBarry Smith    See `MatSetOption()` for the use of the options
6062ef1f0ffSBarry Smith 
6072ef1f0ffSBarry Smith    Developer Note:
60895452b02SPatrick Sanan    Entries that are negative need not be called collectively by all processes.
609382164b0SBarry Smith 
6101cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetOption()`
611d91e6319SBarry Smith E*/
6129371c9d4SSatish Balay typedef enum {
6139371c9d4SSatish Balay   MAT_OPTION_MIN                  = -3,
614c5e4d11fSDmitry Karpeev   MAT_UNUSED_NONZERO_LOCATION_ERR = -2,
61592d4d306SBarry Smith   MAT_ROW_ORIENTED                = -1,
616382164b0SBarry Smith   MAT_SYMMETRIC                   = 1,
617382164b0SBarry Smith   MAT_STRUCTURALLY_SYMMETRIC      = 2,
6188c78258cSHong Zhang   MAT_FORCE_DIAGONAL_ENTRIES      = 3,
619382164b0SBarry Smith   MAT_IGNORE_OFF_PROC_ENTRIES     = 4,
620382164b0SBarry Smith   MAT_USE_HASH_TABLE              = 5,
621382164b0SBarry Smith   MAT_KEEP_NONZERO_PATTERN        = 6,
622382164b0SBarry Smith   MAT_IGNORE_ZERO_ENTRIES         = 7,
623382164b0SBarry Smith   MAT_USE_INODES                  = 8,
624382164b0SBarry Smith   MAT_HERMITIAN                   = 9,
625382164b0SBarry Smith   MAT_SYMMETRY_ETERNAL            = 10,
626c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_LOCATION_ERR    = 11,
627382164b0SBarry Smith   MAT_IGNORE_LOWER_TRIANGULAR     = 12,
628382164b0SBarry Smith   MAT_ERROR_LOWER_TRIANGULAR      = 13,
629382164b0SBarry Smith   MAT_GETROW_UPPERTRIANGULAR      = 14,
630382164b0SBarry Smith   MAT_SPD                         = 15,
63192d4d306SBarry Smith   MAT_NO_OFF_PROC_ZERO_ROWS       = 16,
63292d4d306SBarry Smith   MAT_NO_OFF_PROC_ENTRIES         = 17,
63392d4d306SBarry Smith   MAT_NEW_NONZERO_LOCATIONS       = 18,
634c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_ALLOCATION_ERR  = 19,
635c5e4d11fSDmitry Karpeev   MAT_SUBSET_OFF_PROC_ENTRIES     = 20,
636c10200c1SHong Zhang   MAT_SUBMAT_SINGLEIS             = 21,
637957cac9fSHong Zhang   MAT_STRUCTURE_ONLY              = 22,
638071fcb05SBarry Smith   MAT_SORTED_FULL                 = 23,
6391a2c6b5cSJunchao Zhang   MAT_FORM_EXPLICIT_TRANSPOSE     = 24,
640b94d7dedSBarry Smith   MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25,
641b94d7dedSBarry Smith   MAT_SPD_ETERNAL                 = 26,
6429371c9d4SSatish Balay   MAT_OPTION_MAX                  = 27
6439371c9d4SSatish Balay } MatOption;
644e057df02SPaul Mullowney 
6450f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions;
646014dd563SJed Brown PETSC_EXTERN PetscErrorCode     MatSetOption(Mat, MatOption, PetscBool);
6477d68702bSBarry Smith PETSC_EXTERN PetscErrorCode     MatGetOption(Mat, MatOption, PetscBool *);
648856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode     MatPropagateSymmetryOptions(Mat, Mat);
64919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode     MatGetType(Mat, MatType *);
65084cb2905SBarry Smith 
651014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
652014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
653014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
654014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRowUpperTriangular(Mat);
655014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRowUpperTriangular(Mat);
656014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetColumnVector(Mat, Vec, PetscInt);
6578c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArray(Mat, PetscScalar *[]);
6588f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]);
659d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]);
6608c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArray(Mat, PetscScalar *[]);
6618f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]);
662d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]);
66321e72a00SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *);
664bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
6654099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetType(Mat, MatType);
666ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode    MatSeqAIJKron(Mat, Mat, MatReuse, Mat *);
667388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode    MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *));
6684099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList;
669cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJGetArray(Mat, PetscScalar *[]);
670cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJRestoreArray(Mat, PetscScalar *[]);
6718397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJGetArray(Mat, PetscScalar *[]);
6728397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]);
6738c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArray(Mat, PetscScalar *[]);
6748c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArray(Mat, PetscScalar *[]);
675d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDensePlaceArray(Mat, const PetscScalar[]);
676d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseReplaceArray(Mat, const PetscScalar[]);
677d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseResetArray(Mat);
6788572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArrayRead(Mat, const PetscScalar *[]);
6798572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayRead(Mat, const PetscScalar *[]);
6806947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWrite(Mat, PetscScalar *[]);
6816947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWrite(Mat, PetscScalar *[]);
682cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *);
683cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]);
684cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *);
685cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]);
686cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *);
687cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]);
688014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSize(Mat, PetscInt *);
689014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSize(Mat, PetscInt);
690014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSizes(Mat, PetscInt *, PetscInt *);
691014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizes(Mat, PetscInt, PetscInt);
69233d57670SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizesFromMats(Mat, Mat, Mat);
6930da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode    MatSetVariableBlockSizes(Mat, PetscInt, PetscInt *);
6940da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode    MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt **);
6950da83c2eSBarry Smith 
69686aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]);
69786aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]);
6986947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *);
6996947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *);
7006947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *);
7016947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *);
7026947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *);
7036947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *);
704a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
7055ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *);
7061620fd73SBarry Smith 
707014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec);
708014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec);
709014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec);
710014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec);
711014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec);
712014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *);
713014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *);
714014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec);
715014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec);
716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat);
717bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat);
718eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat);
719f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec);
720f5edf698SHong Zhang 
721d91e6319SBarry Smith /*E
722d91e6319SBarry Smith   MatDuplicateOption - Indicates if a duplicated sparse matrix should have
723d91e6319SBarry Smith   its numerical values copied over or just its nonzero structure.
724d91e6319SBarry Smith 
7252ef1f0ffSBarry Smith   Values:
7262ef1f0ffSBarry Smith + `MAT_DO_NOT_COPY_VALUES`    - Create a matrix using the same nonzero pattern as the original matrix,
7272ef1f0ffSBarry Smith                                 with zeros for the numerical values
7282ef1f0ffSBarry Smith . `MAT_COPY_VALUES`           - Create a matrix with the same nonzero pattern as the original matrix
7292ef1f0ffSBarry Smith                                 and with the same numerical values.
7302ef1f0ffSBarry Smith - `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix
7312ef1f0ffSBarry Smith                                 and does not copy it, using zeros for the numerical values. The parent and
7322ef1f0ffSBarry Smith                                 child matrices will share their index (i and j) arrays, and you cannot
7332ef1f0ffSBarry Smith                                 insert new nonzero entries into either matrix
7340018da39SRichard Tran Mills 
73516a05f60SBarry Smith   Level: beginner
73616a05f60SBarry Smith 
73787497f52SBarry Smith   Note:
73887497f52SBarry Smith   Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in
73987497f52SBarry Smith   this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified.
74070dcbbb9SBarry Smith 
7411cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicate()`
742d91e6319SBarry Smith E*/
7439371c9d4SSatish Balay typedef enum {
7449371c9d4SSatish Balay   MAT_DO_NOT_COPY_VALUES,
7459371c9d4SSatish Balay   MAT_COPY_VALUES,
7469371c9d4SSatish Balay   MAT_SHARE_NONZERO_PATTERN
7479371c9d4SSatish Balay } MatDuplicateOption;
7482e8a6d31SBarry Smith 
74919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *);
750014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *);
75194a9d846SBarry Smith 
752014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure);
753014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer);
754014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *);
755014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *);
756014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *);
757014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *);
758014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *);
759b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *);
760b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *);
761014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *);
762014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer);
7637b80b807SBarry Smith 
7641a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7651a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7661a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7671a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
768d4fbbf0eSBarry Smith 
769d91e6319SBarry Smith /*S
77087497f52SBarry Smith    MatInfo - Context of matrix information, used with `MatGetInfo()`
771d91e6319SBarry Smith 
772d91e6319SBarry Smith    Level: intermediate
773d91e6319SBarry Smith 
7742ef1f0ffSBarry Smith    Fortran Note:
7752ef1f0ffSBarry Smith    Information is stored as a double-precision array of dimension `MAT_INFO_SIZE`
7762ef1f0ffSBarry Smith 
7771cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetInfo()`, `MatInfoType`
778d91e6319SBarry Smith S*/
7794e220ebcSLois Curfman McInnes typedef struct {
780b0a32e0cSBarry Smith   PetscLogDouble block_size;                          /* block size */
781b0a32e0cSBarry Smith   PetscLogDouble nz_allocated, nz_used, nz_unneeded;  /* number of nonzeros */
782b0a32e0cSBarry Smith   PetscLogDouble memory;                              /* memory allocated */
783b0a32e0cSBarry Smith   PetscLogDouble assemblies;                          /* number of matrix assemblies called */
784b0a32e0cSBarry Smith   PetscLogDouble mallocs;                             /* number of mallocs during MatSetValues() */
785b0a32e0cSBarry Smith   PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */
786b0a32e0cSBarry Smith   PetscLogDouble factor_mallocs;                      /* number of mallocs during factorization */
7874e220ebcSLois Curfman McInnes } MatInfo;
7884e220ebcSLois Curfman McInnes 
789d9274352SBarry Smith /*E
790d9274352SBarry Smith     MatInfoType - Indicates if you want information about the local part of the matrix,
791d9274352SBarry Smith     the entire parallel matrix or the maximum over all the local parts.
792d9274352SBarry Smith 
7932ef1f0ffSBarry Smith     Values:
7942ef1f0ffSBarry Smith +   `MAT_LOCAL`      - values for each MPI process part of the matrix
7952ef1f0ffSBarry Smith .   `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes
7962ef1f0ffSBarry Smith -   `MAT_GLOBAL_SUM` - sum of each value over all MPI processes
797d9274352SBarry Smith 
79816a05f60SBarry Smith     Level: beginner
79916a05f60SBarry Smith 
8001cc06b55SBarry Smith .seealso: [](ch_matrices), `MatGetInfo()`, `MatInfo`
801d9274352SBarry Smith E*/
8029371c9d4SSatish Balay typedef enum {
8039371c9d4SSatish Balay   MAT_LOCAL      = 1,
8049371c9d4SSatish Balay   MAT_GLOBAL_MAX = 2,
8059371c9d4SSatish Balay   MAT_GLOBAL_SUM = 3
8069371c9d4SSatish Balay } MatInfoType;
807014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *);
808014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec);
809014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]);
810014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]);
811014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]);
812eede4a3fSMark Adams PETSC_EXTERN PetscErrorCode MatGetRowSumAbs(Mat, Vec);
813014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]);
814014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec);
815014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *);
8167fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *);
8177fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat);
818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *);
819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *);
820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec);
821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode);
822a52676ecSHong Zhang 
823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *);
824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *);
825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *);
826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
828e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
829e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
830a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
831a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
832cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
8334222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
834447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
83586919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *);
8367b80b807SBarry Smith 
837014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *);
838014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *);
839857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *);
840857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *);
841857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *);
842857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *);
843857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *);
844857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *);
845857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *);
846014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat);
8471b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat);
848014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
849014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec);
850014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
851014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
852014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
853014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec);
8547b80b807SBarry Smith 
855014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *);
856014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *);
857014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *);
858014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **);
859014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *);
860014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **);
861566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *);
8625ef9f2a5SBarry Smith 
8637dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
864edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrices()", ) static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
865d71ae5a4SJacob Faibussowitsch {
8669371c9d4SSatish Balay   return MatCreateSubMatrices(mat, n, irow, icol, scall, submat);
8679371c9d4SSatish Balay }
8687dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
869edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatricesMPI()", ) static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
870d71ae5a4SJacob Faibussowitsch {
8719371c9d4SSatish Balay   return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat);
8729371c9d4SSatish Balay }
873014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]);
874df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]);
8757dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *);
876edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrix()", ) static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat)
877d71ae5a4SJacob Faibussowitsch {
8789371c9d4SSatish Balay   return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat);
8799371c9d4SSatish Balay }
880014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *);
881014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *);
882014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *);
883014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *);
8847b80b807SBarry Smith 
885014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *);
886014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *);
887014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat);
888014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *);
8898a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *);
890014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
891ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *);
892f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *);
893014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *);
894014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]);
8958efafbd8SBarry Smith 
896014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt);
897aa1e27eaSFande Kong PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov);
898d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool);
8997b80b807SBarry Smith 
900014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
90122440eb1SKris Buschelman 
9027bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
9032df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
9047bab7c10SHong Zhang 
905014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *);
906014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *);
90722440eb1SKris Buschelman 
908014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
909014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *);
910bc011b1eSHong Zhang 
911014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure);
912014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure);
9131c741599SHong Zhang 
914014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar);
915014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar);
9167b80b807SBarry Smith 
917014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping);
918014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
919a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *);
92081fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout);
921014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
922014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
923014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
924014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
925e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
926014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
927014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
928052efed2SBarry Smith 
929014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt);
930014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *);
93190f02eecSBarry Smith 
932014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec);
933014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec);
934014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec);
93530b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *);
93630b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *);
93730b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *);
9382a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *);
939edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 6, 0, "MatCreateVecs()", ) static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y)
940d71ae5a4SJacob Faibussowitsch {
9419371c9d4SSatish Balay   return MatCreateVecs(mat, x, y);
9429371c9d4SSatish Balay }
94353cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *);
944014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *);
945014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *);
9463a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *);
9479c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *);
948bd481603SBarry Smith 
949c8d6c325SJunchao Zhang /*@C
9501620fd73SBarry Smith    MatSetValue - Set a single entry into a matrix.
9511620fd73SBarry Smith 
952e1c5b2e2SJose E. Roman    Not Collective
953a9834a7dSSatish Balay 
9541620fd73SBarry Smith    Input Parameters:
955c8d6c325SJunchao Zhang +  mat  - the matrix
95616a05f60SBarry Smith .  i    - the row location of the entry
95716a05f60SBarry Smith .  j    - the column location of the entry
95816a05f60SBarry Smith .  va   - the value to insert
95987497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
9601620fd73SBarry Smith 
9611620fd73SBarry Smith    Level: beginner
9621620fd73SBarry Smith 
96395bd0b28SBarry Smith    Notes:
96495bd0b28SBarry Smith    This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()`
96595bd0b28SBarry Smith    MUST be called after all calls to `MatSetValue()` have been completed.
96695bd0b28SBarry Smith 
9672ef1f0ffSBarry Smith    For efficiency one should use `MatSetValues()` and set several values simultaneously.
9682ef1f0ffSBarry Smith 
969b43fc34aSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `InsertMode`, `MatGetValue()`, `MatSetValues()`,
9702ef1f0ffSBarry Smith           `MatSetValueLocal()`, `MatSetValuesLocal()`
971c8d6c325SJunchao Zhang @*/
972c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValue(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
973d71ae5a4SJacob Faibussowitsch {
974c8d6c325SJunchao Zhang   return MatSetValues(mat, 1, &i, 1, &j, &va, mode);
9759371c9d4SSatish Balay }
9761620fd73SBarry Smith 
977e5e5a7b5SPatrick Sanan /*@C
978e5e5a7b5SPatrick Sanan    MatGetValue - Gets a single value from a matrix
9791620fd73SBarry Smith 
980e5e5a7b5SPatrick Sanan    Not Collective; can only return a value owned by the given process
981e5e5a7b5SPatrick Sanan 
982e5e5a7b5SPatrick Sanan    Input Parameters:
983e5e5a7b5SPatrick Sanan +  mat - the matrix
984e5e5a7b5SPatrick Sanan .  row - the row location of the entry
985e5e5a7b5SPatrick Sanan -  col - the column location of the entry
986e5e5a7b5SPatrick Sanan 
987e5e5a7b5SPatrick Sanan    Output Parameter:
988e5e5a7b5SPatrick Sanan .  va - the value
989e5e5a7b5SPatrick Sanan 
9902ef1f0ffSBarry Smith    Level: advanced
9912ef1f0ffSBarry Smith 
992e5e5a7b5SPatrick Sanan    Notes:
993b43fc34aSPierre Jolivet    The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd()` before this call
9942ef1f0ffSBarry Smith 
99587497f52SBarry Smith    For efficiency one should use `MatGetValues()` and get several values simultaneously.
996e5e5a7b5SPatrick Sanan 
99787497f52SBarry Smith    See notes for `MatGetValues()`.
998e5e5a7b5SPatrick Sanan 
999b43fc34aSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()`
1000e5e5a7b5SPatrick Sanan @*/
1001d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va)
1002d71ae5a4SJacob Faibussowitsch {
10039371c9d4SSatish Balay   return MatGetValues(mat, 1, &row, 1, &col, va);
10049371c9d4SSatish Balay }
1005e5e5a7b5SPatrick Sanan 
1006c8d6c325SJunchao Zhang /*@C
10072ef1f0ffSBarry Smith    MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes.
1008e5e5a7b5SPatrick Sanan 
1009e5e5a7b5SPatrick Sanan    Not Collective
1010e5e5a7b5SPatrick Sanan 
1011e5e5a7b5SPatrick Sanan    Input Parameters:
1012c8d6c325SJunchao Zhang +  mat  - the matrix
101316a05f60SBarry Smith .  i    - the row location of the entry
101416a05f60SBarry Smith .  j    - the column location of the entry
101516a05f60SBarry Smith .  va   - the value to insert
101687497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
1017e5e5a7b5SPatrick Sanan 
10182ef1f0ffSBarry Smith    Level: intermediate
10192ef1f0ffSBarry Smith 
1020e5e5a7b5SPatrick Sanan    Notes:
102187497f52SBarry Smith    For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously.
1022e5e5a7b5SPatrick Sanan 
102387497f52SBarry Smith    See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used.
1024e5e5a7b5SPatrick Sanan 
10251cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSetValue()`, `MatSetValuesLocal()`
1026c8d6c325SJunchao Zhang @*/
1027c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValueLocal(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
1028d71ae5a4SJacob Faibussowitsch {
1029c8d6c325SJunchao Zhang   return MatSetValuesLocal(mat, 1, &i, 1, &j, &va, mode);
10309371c9d4SSatish Balay }
10311620fd73SBarry Smith 
10321620fd73SBarry Smith /*MC
1033d0609cedSBarry Smith    MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per
1034bd481603SBarry Smith    row in a matrix providing the data that one can use to correctly preallocate the matrix.
1035bd481603SBarry Smith 
1036bd481603SBarry Smith    Synopsis:
1037aaa7dc30SBarry Smith    #include <petscmat.h>
1038d0609cedSBarry Smith    PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz)
1039bd481603SBarry Smith 
1040d083f849SBarry Smith    Collective
1041bd481603SBarry Smith 
1042bd481603SBarry Smith    Input Parameters:
1043bd481603SBarry Smith +  comm  - the communicator that will share the eventually allocated matrix
1044859fcb39SBarry Smith .  nrows - the number of LOCAL rows in the matrix
1045859fcb39SBarry Smith -  ncols - the number of LOCAL columns in the matrix
1046bd481603SBarry Smith 
1047bd481603SBarry Smith    Output Parameters:
1048bd481603SBarry Smith +  dnz - the array that will be passed to the matrix preallocation routines
1049a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1050bd481603SBarry Smith 
10512ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1052bd481603SBarry Smith 
1053bd481603SBarry Smith    Notes:
10542ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
10552ef1f0ffSBarry Smith    the use of this routine
10562ef1f0ffSBarry Smith 
1057d0609cedSBarry Smith    This is a macro that handles its own error checking, it does not return an error code.
1058d0609cedSBarry Smith 
10592ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1060bd481603SBarry Smith 
10612ef1f0ffSBarry Smith    Developer Note:
1062af27ebaaSBarry Smith    This is a MACRO, not a function, because it has a leading { that is closed by `PetscPreallocateFinalize()`.
1063bd481603SBarry Smith 
10641cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1065db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1066bd481603SBarry Smith M*/
10679371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \
10689371c9d4SSatish Balay   do { \
10693ba16761SJacob Faibussowitsch     PetscInt              __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \
10703ba16761SJacob Faibussowitsch     PetscInt PETSC_UNUSED __start; \
10719566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \
10729566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \
10739371c9d4SSatish Balay     __start = __end - __ncols; \
10749371c9d4SSatish Balay     (void)__start; \
10759566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \
10765f80ce2aSJacob Faibussowitsch   __rstart -= __nrows
10777c922b88SBarry Smith 
1078edd03b47SJacob Faibussowitsch #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateBegin()", ) MatPreallocateBegin(__VA_ARGS__)
1079d0609cedSBarry Smith 
1080bd481603SBarry Smith /*MC
1081bd481603SBarry Smith    MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1082bd481603SBarry Smith    inserted using a local number of the rows and columns
1083bd481603SBarry Smith 
1084bd481603SBarry Smith    Synopsis:
1085aaa7dc30SBarry Smith    #include <petscmat.h>
1086c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1087bd481603SBarry Smith 
1088bd481603SBarry Smith    Not Collective
1089bd481603SBarry Smith 
1090bd481603SBarry Smith    Input Parameters:
1091784ac674SJed Brown +  map   - the row mapping from local numbering to global numbering
1092bd481603SBarry Smith .  nrows - the number of rows indicated
10931d73ed98SBarry Smith .  rows  - the indices of the rows
1094784ac674SJed Brown .  cmap  - the column mapping from local to global numbering
1095bd481603SBarry Smith .  ncols - the number of columns in the matrix
1096bd481603SBarry Smith .  cols  - the columns indicated
1097bd481603SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1098a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1099bd481603SBarry Smith 
11002ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1101bd481603SBarry Smith 
1102bd481603SBarry Smith    Notes:
11032ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11042ef1f0ffSBarry Smith    the use of this routine
1105bd481603SBarry Smith 
11062ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1107bd481603SBarry Smith 
11081cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1109db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()`
1110bd481603SBarry Smith M*/
111194bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11129371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1113c4f061fbSSatish Balay 
1114bd481603SBarry Smith /*MC
1115c1154cd5SBarry Smith    MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1116c1154cd5SBarry Smith    inserted using a local number of the rows and columns. This version removes any duplicate columns in cols
1117c1154cd5SBarry Smith 
1118c1154cd5SBarry Smith    Synopsis:
1119c1154cd5SBarry Smith    #include <petscmat.h>
1120c1154cd5SBarry Smith    PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1121c1154cd5SBarry Smith 
1122c1154cd5SBarry Smith    Not Collective
1123c1154cd5SBarry Smith 
1124c1154cd5SBarry Smith    Input Parameters:
1125c1154cd5SBarry Smith +  map   - the row mapping from local numbering to global numbering
1126c1154cd5SBarry Smith .  nrows - the number of rows indicated
1127c1154cd5SBarry Smith .  rows  - the indices of the rows (these values are mapped to the global values)
1128c1154cd5SBarry Smith .  cmap  - the column mapping from local to global numbering
1129c1154cd5SBarry Smith .  ncols - the number of columns in the matrix   (this value will be changed if duplicate columns are found)
1130c1154cd5SBarry Smith .  cols  - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed)
1131c1154cd5SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1132a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1133c1154cd5SBarry Smith 
11342ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1135c1154cd5SBarry Smith 
1136c1154cd5SBarry Smith    Notes:
11372ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11382ef1f0ffSBarry Smith    the use of this routine
1139c1154cd5SBarry Smith 
11402ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1141c1154cd5SBarry Smith 
11421cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1143db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1144c1154cd5SBarry Smith M*/
114594bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11469371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1147c1154cd5SBarry Smith 
1148c1154cd5SBarry Smith /*MC
1149d6e23781SBarry Smith    MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1150bd481603SBarry Smith    inserted using a local number of the rows and columns
1151bd481603SBarry Smith 
1152bd481603SBarry Smith    Synopsis:
1153aaa7dc30SBarry Smith    #include <petscmat.h>
1154d6e23781SBarry Smith    PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1155d6e23781SBarry Smith 
1156d6e23781SBarry Smith    Not Collective
1157d6e23781SBarry Smith 
1158d6e23781SBarry Smith    Input Parameters:
1159d6e23781SBarry Smith +  map   - the row mapping from local numbering to global numbering
1160d6e23781SBarry Smith .  nrows - the number of rows indicated
1161d6e23781SBarry Smith .  rows  - the indices of the rows
1162d6e23781SBarry Smith .  cmap  - the column mapping from local to global numbering
1163d6e23781SBarry Smith .  ncols - the number of columns in the matrix
1164d6e23781SBarry Smith .  cols  - the columns indicated
1165d6e23781SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1166a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1167d6e23781SBarry Smith 
11682ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1169d6e23781SBarry Smith 
1170d6e23781SBarry Smith    Notes:
11712ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11722ef1f0ffSBarry Smith    the use of this routine
1173d6e23781SBarry Smith 
11742ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1175d6e23781SBarry Smith 
11761cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1177db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`
1178d6e23781SBarry Smith M*/
117994bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11809371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1181d6e23781SBarry Smith 
1182d6e23781SBarry Smith /*MC
1183d6e23781SBarry Smith    MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1184d6e23781SBarry Smith    inserted using a local number of the rows and columns
1185d6e23781SBarry Smith 
1186d6e23781SBarry Smith    Synopsis:
1187d6e23781SBarry Smith    #include <petscmat.h>
1188d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1189bd481603SBarry Smith 
1190bd481603SBarry Smith    Not Collective
1191bd481603SBarry Smith 
1192bd481603SBarry Smith    Input Parameters:
1193bd481603SBarry Smith +  map   - the mapping between local numbering and global numbering
1194bd481603SBarry Smith .  nrows - the number of rows indicated
11951d73ed98SBarry Smith .  rows  - the indices of the rows
1196bd481603SBarry Smith .  ncols - the number of columns in the matrix
1197bd481603SBarry Smith .  cols  - the columns indicated
1198bd481603SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1199a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1200bd481603SBarry Smith 
12012ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1202bd481603SBarry Smith 
1203bd481603SBarry Smith    Notes:
12042ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12052ef1f0ffSBarry Smith    the use of this routine
1206bd481603SBarry Smith 
12072ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1208bd481603SBarry Smith 
12091cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`
1210db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1211bd481603SBarry Smith M*/
121294bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \
12139371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));)
1214e83a5d19SLisandro Dalcin 
1215bd481603SBarry Smith /*MC
1216bd481603SBarry Smith    MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1217bd481603SBarry Smith    inserted using a local number of the rows and columns
1218bd481603SBarry Smith 
1219bd481603SBarry Smith    Synopsis:
1220aaa7dc30SBarry Smith    #include <petscmat.h>
1221c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1222bd481603SBarry Smith 
1223bd481603SBarry Smith    Not Collective
1224bd481603SBarry Smith 
1225bd481603SBarry Smith    Input Parameters:
122664075487SBarry Smith +  row   - the row
1227bd481603SBarry Smith .  ncols - the number of columns in the matrix
1228a50f8bf6SHong Zhang -  cols  - the columns indicated
1229a50f8bf6SHong Zhang 
1230a50f8bf6SHong Zhang    Output Parameters:
1231a50f8bf6SHong Zhang +  dnz - the array that will be passed to the matrix preallocation routines
1232a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1233bd481603SBarry Smith 
12342ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1235bd481603SBarry Smith 
1236bd481603SBarry Smith    Notes:
12372ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12382ef1f0ffSBarry Smith    the use of this routine
1239bd481603SBarry Smith 
12402ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1241bd481603SBarry Smith 
1242af27ebaaSBarry Smith    This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin().
12431620fd73SBarry Smith 
12441cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1245db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1246bd481603SBarry Smith M*/
12479371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \
12489371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \
124964075487SBarry Smith     if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \
1250a6042fd4SStefano Zampini     else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12519371c9d4SSatish Balay   })
12527c922b88SBarry Smith 
1253bd481603SBarry Smith /*MC
1254d6e23781SBarry Smith    MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1255bd481603SBarry Smith    inserted using a local number of the rows and columns
1256bd481603SBarry Smith 
1257bd481603SBarry Smith    Synopsis:
1258aaa7dc30SBarry Smith    #include <petscmat.h>
1259d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1260bd481603SBarry Smith 
1261bd481603SBarry Smith    Not Collective
1262bd481603SBarry Smith 
1263bd481603SBarry Smith    Input Parameters:
1264bd481603SBarry Smith +  nrows - the number of rows indicated
12651d73ed98SBarry Smith .  rows  - the indices of the rows
1266bd481603SBarry Smith .  ncols - the number of columns in the matrix
1267bd481603SBarry Smith .  cols  - the columns indicated
1268bd481603SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1269a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1270bd481603SBarry Smith 
12712ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1272bd481603SBarry Smith 
1273bd481603SBarry Smith    Notes:
12742ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12752ef1f0ffSBarry Smith    the use of this routine
1276bd481603SBarry Smith 
12772ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1278bd481603SBarry Smith 
1279af27ebaaSBarry Smith    This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin().
12801620fd73SBarry Smith 
12811cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`,
1282db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1283bd481603SBarry Smith M*/
128494bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \
12859371c9d4SSatish Balay   PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \
1286d3d32019SBarry Smith     if (cols[__i] >= __end) onz[row - __rstart]++; \
1287a6042fd4SStefano Zampini     else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12889371c9d4SSatish Balay   })
1289d3d32019SBarry Smith 
1290bd481603SBarry Smith /*MC
1291a6042fd4SStefano Zampini    MatPreallocateLocation -  An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists
129216371a99SBarry Smith 
129316371a99SBarry Smith    Synopsis:
1294aaa7dc30SBarry Smith    #include <petscmat.h>
129516371a99SBarry Smith    PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz)
129616371a99SBarry Smith 
129716371a99SBarry Smith    Not Collective
129816371a99SBarry Smith 
129916371a99SBarry Smith    Input Parameters:
1300a2b725a8SWilliam Gropp +  A     - matrix
130116371a99SBarry Smith .  row   - row where values exist (must be local to this process)
130216371a99SBarry Smith .  ncols - number of columns
130316371a99SBarry Smith .  cols  - columns with nonzeros
130416371a99SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1305a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
130616371a99SBarry Smith 
13072ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
130816371a99SBarry Smith 
130916371a99SBarry Smith    Notes:
13102ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
13112ef1f0ffSBarry Smith    the use of this routine
131216371a99SBarry Smith 
13132ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
131416371a99SBarry Smith 
1315af27ebaaSBarry Smith    Developer Note:
1316af27ebaaSBarry Smith    This is a MACRO, not a function, because it uses a bunch of variables private to the MatPreallocation.... routines.
131716371a99SBarry Smith 
13181cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1319db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
132016371a99SBarry Smith M*/
1321d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz))
132216371a99SBarry Smith 
132316371a99SBarry Smith /*MC
1324d0609cedSBarry Smith    MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per
1325bd481603SBarry Smith    row in a matrix providing the data that one can use to correctly preallocate the matrix.
1326bd481603SBarry Smith 
1327bd481603SBarry Smith    Synopsis:
1328aaa7dc30SBarry Smith    #include <petscmat.h>
1329d0609cedSBarry Smith    PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz)
1330bd481603SBarry Smith 
1331d083f849SBarry Smith    Collective
1332bd481603SBarry Smith 
1333bd481603SBarry Smith    Input Parameters:
133416371a99SBarry Smith +  dnz - the array that was be passed to the matrix preallocation routines
1335a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1336bd481603SBarry Smith 
13372ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1338bd481603SBarry Smith 
1339bd481603SBarry Smith    Notes:
13402ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
13412ef1f0ffSBarry Smith    the use of this routine
1342d0609cedSBarry Smith 
13432ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1344bd481603SBarry Smith 
13452ef1f0ffSBarry Smith    Developer Note:
1346af27ebaaSBarry Smith    This is a MACRO, not a function, because it closes the { started in MatPreallocateBegin().
13471620fd73SBarry Smith 
13481cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1349db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1350bd481603SBarry Smith M*/
13519371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \
13529371c9d4SSatish Balay   PetscCall(PetscFree2(dnz, onz)); \
13539371c9d4SSatish Balay   } \
13549371c9d4SSatish Balay   while (0)
1355d0609cedSBarry Smith 
1356edd03b47SJacob Faibussowitsch #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateEnd()", ) MatPreallocateEnd(__VA_ARGS__)
13577c922b88SBarry Smith 
13587b80b807SBarry Smith /* Routines unique to particular data structures */
1359014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *);
1360698d4c6aSKris Buschelman 
1361014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *);
1362014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *);
1363698d4c6aSKris Buschelman 
1364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]);
1365014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]);
1366014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1367014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1369014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool);
13707b80b807SBarry Smith 
1371a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4
1372a96a251dSBarry Smith 
1373014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1374014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1375014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]);
137619b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt);
1377273d9f13SBarry Smith 
1378014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1379014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1380014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1381014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1382014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1383014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1384014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1385014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]);
1386b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *);
1387252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *);
1388014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]);
1389014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]);
13909230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
13919230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
1392014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *);
1393273d9f13SBarry Smith 
139449a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *);
1395ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt);
1396edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatDenseSetLDA()", ) static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda)
1397d71ae5a4SJacob Faibussowitsch {
13989371c9d4SSatish Balay   return MatDenseSetLDA(A, lda);
13999371c9d4SSatish Balay }
1400014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *);
14011b807ce4Svictorle 
1402621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1403621e819fSSatish Balay 
1404014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat);
1405014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat);
14062e8a6d31SBarry Smith 
1407014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *);
14087cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *);
14097b80b807SBarry Smith /*
14107b80b807SBarry Smith   These routines are not usually accessed directly, rather solving is
141194b7f48cSBarry Smith   done through the KSP and PC interfaces.
14127b80b807SBarry Smith */
14137b80b807SBarry Smith 
141476bdecfbSBarry Smith /*J
14152ef1f0ffSBarry Smith    MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used
14162ef1f0ffSBarry Smith    to reduce fill in sparse factorizations.
1417d9274352SBarry Smith 
1418d9274352SBarry Smith    Level: beginner
1419d9274352SBarry Smith 
14202c7c0729SBarry Smith    Notes:
142116a05f60SBarry Smith    If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one
142216a05f60SBarry Smith    of its own.
14232c7c0729SBarry Smith 
14242ef1f0ffSBarry Smith    There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()`
14252ef1f0ffSBarry Smith 
14262ef1f0ffSBarry Smith    Developer Note:
14272ef1f0ffSBarry Smith    This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning`
14282ef1f0ffSBarry Smith 
14291cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`,
14302ef1f0ffSBarry Smith           `PCFactorSetOrderingType()`
143176bdecfbSBarry Smith J*/
143219fd82e9SBarry Smith typedef const char *MatOrderingType;
14332692d6eeSBarry Smith #define MATORDERINGNATURAL       "natural"
14342692d6eeSBarry Smith #define MATORDERINGND            "nd"
14352692d6eeSBarry Smith #define MATORDERING1WD           "1wd"
14362692d6eeSBarry Smith #define MATORDERINGRCM           "rcm"
14372692d6eeSBarry Smith #define MATORDERINGQMD           "qmd"
14382692d6eeSBarry Smith #define MATORDERINGROWLENGTH     "rowlength"
1439510184a7SJed Brown #define MATORDERINGWBM           "wbm"
1440fc1bef75SJed Brown #define MATORDERINGSPECTRAL      "spectral"
1441312e372aSBarry Smith #define MATORDERINGAMD           "amd"           /* only works if UMFPACK is installed with PETSc */
1442048412efSPablo Brubeck #define MATORDERINGMETISND       "metisnd"       /* only works if METIS is installed with PETSc */
14439bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */
14442c7c0729SBarry Smith #define MATORDERINGEXTERNAL      "external"      /* uses an ordering type internal to the factorization package */
1445b12f92e5SBarry Smith 
144619fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrdering(Mat, MatOrderingType, IS *, IS *);
1447140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrderingList(PetscFunctionList *);
1448bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode    MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *));
1449140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList;
1450d4fbbf0eSBarry Smith 
1451013e2dc7SBarry Smith #include "petscmatcoarsen.h"
1452013e2dc7SBarry Smith 
1453014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS);
1454fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *);
1455a2ce50c7SBarry Smith 
14564ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *);
14574ac6704cSBarry Smith 
1458d91e6319SBarry Smith /*S
14592ef1f0ffSBarry Smith    MatFactorShiftType - Type of numeric shift used for factorizations
1460d90ac83dSHong Zhang 
14612ef1f0ffSBarry Smith    Values:
14622ef1f0ffSBarry Smith +  `MAT_SHIFT_NONE`              - do not shift the matrix diagonal entries
14632ef1f0ffSBarry Smith .  `MAT_SHIFT_NONZERO`           - shift the entries to be non-zero
14642ef1f0ffSBarry Smith .  `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite
14652ef1f0ffSBarry Smith -  `MAT_SHIFT_INBLOCKS`          - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ`
1466d90ac83dSHong Zhang 
14672ef1f0ffSBarry Smith    Level: intermediate
14682ef1f0ffSBarry Smith 
14691cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()`
1470d90ac83dSHong Zhang S*/
14719371c9d4SSatish Balay typedef enum {
14729371c9d4SSatish Balay   MAT_SHIFT_NONE,
14739371c9d4SSatish Balay   MAT_SHIFT_NONZERO,
14749371c9d4SSatish Balay   MAT_SHIFT_POSITIVE_DEFINITE,
14759371c9d4SSatish Balay   MAT_SHIFT_INBLOCKS
14769371c9d4SSatish Balay } MatFactorShiftType;
14776a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[];
14785e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[];
1479d90ac83dSHong Zhang 
1480d90ac83dSHong Zhang /*S
1481ec5066bdSBarry Smith     MatFactorError - indicates what type of error was generated in a matrix factorization
14829aa7eafdSHong Zhang 
14832ef1f0ffSBarry Smith     Values:
14842ef1f0ffSBarry Smith +   `MAT_FACTOR_NOERROR`           - there was no error during the factorization
14852ef1f0ffSBarry Smith .   `MAT_FACTOR_STRUCT_ZEROPIVOT`  - there was a missing entry in a diagonal location of the matrix
14862ef1f0ffSBarry Smith .   `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization
14872ef1f0ffSBarry Smith .   `MAT_FACTOR_OUTMEMORY`         - the factorization has run out of memory
14882ef1f0ffSBarry Smith -   `MAT_FACTOR_OTHER`             - some other error has occurred.
14899aa7eafdSHong Zhang 
14902ef1f0ffSBarry Smith     Level: intermediate
149100e125f8SBarry Smith 
14922ef1f0ffSBarry Smith     Note:
14932ef1f0ffSBarry Smith     When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason`
14942ef1f0ffSBarry Smith 
14951cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`,
14962ef1f0ffSBarry Smith           `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason`
14979aa7eafdSHong Zhang S*/
14989371c9d4SSatish Balay typedef enum {
14999371c9d4SSatish Balay   MAT_FACTOR_NOERROR,
15009371c9d4SSatish Balay   MAT_FACTOR_STRUCT_ZEROPIVOT,
15019371c9d4SSatish Balay   MAT_FACTOR_NUMERIC_ZEROPIVOT,
15029371c9d4SSatish Balay   MAT_FACTOR_OUTMEMORY,
15039371c9d4SSatish Balay   MAT_FACTOR_OTHER
15049371c9d4SSatish Balay } MatFactorError;
15059aa7eafdSHong Zhang 
150600e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *);
1507b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat);
15087b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *);
150900e125f8SBarry Smith 
15109aa7eafdSHong Zhang /*S
1511422a814eSBarry Smith    MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization
1512b00f7748SHong Zhang 
1513b00f7748SHong Zhang    Level: developer
1514b00f7748SHong Zhang 
15152ef1f0ffSBarry Smith    Note:
15162ef1f0ffSBarry Smith    You can use `MatFactorInfoInitialize()` to set default values.
1517b00f7748SHong Zhang 
15182ef1f0ffSBarry Smith    Fortran Note:
15192ef1f0ffSBarry Smith    The data is available in a double precision arrays of size `MAT_FACTORINFO_SIZE`
15202ef1f0ffSBarry Smith 
15211cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`,
15222ef1f0ffSBarry Smith           `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()`
1523b00f7748SHong Zhang S*/
1524b00f7748SHong Zhang typedef struct {
152515e8a5b3SHong Zhang   PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */
152685317021SBarry Smith   PetscReal usedt;
152715e8a5b3SHong Zhang   PetscReal dt;            /* drop tolerance */
1528b00f7748SHong Zhang   PetscReal dtcol;         /* tolerance for pivoting */
152915e8a5b3SHong Zhang   PetscReal dtcount;       /* maximum nonzeros to be allowed per row */
153067e28bfeSBarry Smith   PetscReal fill;          /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */
1531348344bbSBarry Smith   PetscReal levels;        /* ICC/ILU(levels) */
1532bcd9e38bSBarry Smith   PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0
1533bcd9e38bSBarry Smith                                    factorization may be faster if do not pivot */
153415e8a5b3SHong Zhang   PetscReal zeropivot;     /* pivot is called zero if less than this */
1535f4db908eSBarry Smith   PetscReal shifttype;     /* type of shift added to matrix factor to prevent zero pivots */
1536f4db908eSBarry Smith   PetscReal shiftamount;   /* how large the shift is */
153715e8a5b3SHong Zhang } MatFactorInfo;
1538ffa6d0a5SLois Curfman McInnes 
1539014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *);
15409a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *);
15419a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15429a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *);
15439a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *);
15449a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *);
15459a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15469a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15479a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15489a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *);
15499a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *);
15503f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *);
15513f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15523f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *);
1553014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *);
1554014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec);
1555014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec);
1556014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec);
1557014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec);
1558014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec);
1559014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec);
1560014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs);
15617c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat);
15627c2f51b8SStefano Zampini 
15639371c9d4SSatish Balay typedef enum {
15649371c9d4SSatish Balay   MAT_FACTOR_SCHUR_UNFACTORED,
15659371c9d4SSatish Balay   MAT_FACTOR_SCHUR_FACTORED,
15669371c9d4SSatish Balay   MAT_FACTOR_SCHUR_INVERTED
15679371c9d4SSatish Balay } MatFactorSchurStatus;
15688e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS);
15697c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15707c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus);
15715a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat);
15727c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15735a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec);
15745a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec);
15756dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat);
1576bb5a7306SBarry Smith 
15778a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat);
1578d91e6319SBarry Smith /*E
1579d91e6319SBarry Smith    MatSORType - What type of (S)SOR to perform
1580bb1eb677SSatish Balay 
15812ef1f0ffSBarry Smith    Values:
15822ef1f0ffSBarry Smith +  `SOR_FORWARD_SWEEP`         - do a sweep from the first row of the matrix to the last
15832ef1f0ffSBarry Smith .  `SOR_BACKWARD_SWEEP`        - do a sweep from the last row to the first
15842ef1f0ffSBarry Smith .  `SOR_SYMMETRIC_SWEEP`       - do a sweep from the first row to the last and then back to the first
1585af27ebaaSBarry Smith .  `SOR_LOCAL_FORWARD_SWEEP`   - each MPI process does its own forward sweep with no communication
1586af27ebaaSBarry Smith .  `SOR_LOCAL_BACKWARD_SWEEP`  - each MPI process does its own backward sweep with no communication
1587af27ebaaSBarry Smith .  `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI process does its own symmetric sweep with no communication
15882ef1f0ffSBarry Smith .  `SOR_ZERO_INITIAL_GUESS`    - indicates the initial solution is zero so the sweep can avoid unneeded computation
15892ef1f0ffSBarry Smith .  `SOR_EISENSTAT`             - apply the Eisentat application of SOR, see `PCEISENSTAT`
15902ef1f0ffSBarry Smith .  `SOR_APPLY_UPPER`           - multiply by the upper triangular portion of the matrix
15912ef1f0ffSBarry Smith -  `SOR_APPLY_LOWER`           - multiply by the lower triangular portion of the matrix
15922ef1f0ffSBarry Smith 
1593d91e6319SBarry Smith    Level: beginner
1594d91e6319SBarry Smith 
15952ef1f0ffSBarry Smith    Note:
15962ef1f0ffSBarry Smith    These may be bitwise ORd together
1597d9274352SBarry Smith 
15982ef1f0ffSBarry Smith    Developer Note:
15992ef1f0ffSBarry Smith    Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below
1600d91e6319SBarry Smith 
16011cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSOR()`
1602d91e6319SBarry Smith E*/
16039371c9d4SSatish Balay typedef enum {
16049371c9d4SSatish Balay   SOR_FORWARD_SWEEP         = 1,
16059371c9d4SSatish Balay   SOR_BACKWARD_SWEEP        = 2,
16069371c9d4SSatish Balay   SOR_SYMMETRIC_SWEEP       = 3,
16079371c9d4SSatish Balay   SOR_LOCAL_FORWARD_SWEEP   = 4,
16089371c9d4SSatish Balay   SOR_LOCAL_BACKWARD_SWEEP  = 8,
16099371c9d4SSatish Balay   SOR_LOCAL_SYMMETRIC_SWEEP = 12,
16109371c9d4SSatish Balay   SOR_ZERO_INITIAL_GUESS    = 16,
16119371c9d4SSatish Balay   SOR_EISENSTAT             = 32,
16129371c9d4SSatish Balay   SOR_APPLY_UPPER           = 64,
16139371c9d4SSatish Balay   SOR_APPLY_LOWER           = 128
16149371c9d4SSatish Balay } MatSORType;
1615014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
16168ed539a5SBarry Smith 
16177086a01eSPeter Brune /*S
16187086a01eSPeter Brune    MatColoring - Object for managing the coloring of matrices.
16197086a01eSPeter Brune 
16207086a01eSPeter Brune    Level: beginner
16217086a01eSPeter Brune 
1622ec5066bdSBarry Smith    Notes:
162387497f52SBarry Smith    Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
162487497f52SBarry Smith    matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors).
1625ec5066bdSBarry Smith 
162687497f52SBarry Smith    Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This
16272ef1f0ffSBarry Smith    same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices.
1628ec5066bdSBarry Smith 
16291cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`,
16302ef1f0ffSBarry Smith           `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`,
16312ef1f0ffSBarry Smith           `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen`
16327086a01eSPeter Brune S*/
1633d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring;
1634d4db15c4SBarry Smith 
1635d4db15c4SBarry Smith /*J
1636d4db15c4SBarry Smith    MatColoringType - String with the name of a PETSc matrix coloring
1637d9274352SBarry Smith 
1638d9274352SBarry Smith    Level: beginner
1639d9274352SBarry Smith 
16401cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring`
164176bdecfbSBarry Smith J*/
164219fd82e9SBarry Smith typedef const char *MatColoringType;
16435567d71aSPeter Brune #define MATCOLORINGJP      "jp"
1644b9acb617SPeter Brune #define MATCOLORINGPOWER   "power"
16452692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural"
16462692d6eeSBarry Smith #define MATCOLORINGSL      "sl"
16472692d6eeSBarry Smith #define MATCOLORINGLF      "lf"
16482692d6eeSBarry Smith #define MATCOLORINGID      "id"
16498121bdceSPeter Brune #define MATCOLORINGGREEDY  "greedy"
1650b12f92e5SBarry Smith 
16518ac6da0aSPeter Brune /*E
16522ef1f0ffSBarry Smith    MatColoringWeightType - Type of weight scheme used for the coloring algorithm
16538ac6da0aSPeter Brune 
16542ef1f0ffSBarry Smith    Values:
165587497f52SBarry Smith +  `MAT_COLORING_RANDOM`  - Random weights
165687497f52SBarry Smith .  `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering.
165787497f52SBarry Smith -  `MAT_COLORING_LF`      - Last-first weighting.
16588ac6da0aSPeter Brune 
16598ac6da0aSPeter Brune     Level: intermediate
16608ac6da0aSPeter Brune 
16611cc06b55SBarry Smith .seealso: [](ch_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()`
16628ac6da0aSPeter Brune E*/
16639371c9d4SSatish Balay typedef enum {
16649371c9d4SSatish Balay   MAT_COLORING_WEIGHT_RANDOM,
16659371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LEXICAL,
16669371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LF,
16679371c9d4SSatish Balay   MAT_COLORING_WEIGHT_SL
16689371c9d4SSatish Balay } MatColoringWeightType;
16698ac6da0aSPeter Brune 
1670335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *);
1671d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *);
1672335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *);
1673335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer);
1674335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType);
1675335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring);
1676335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt);
1677335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *);
1678335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt);
1679335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *);
1680335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *);
1681335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring));
1682014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *);
16838ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType);
1684c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *);
16858ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm);
1686bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring);
1687edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatColoringTest()", ) static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring)
1688d71ae5a4SJacob Faibussowitsch {
16899371c9d4SSatish Balay   return MatColoringTest(matcoloring, iscoloring);
16909371c9d4SSatish Balay }
1691bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring);
1692639f9d9dSBarry Smith 
1693d9274352SBarry Smith /*S
169487497f52SBarry Smith    MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring
1695639f9d9dSBarry Smith 
1696d9274352SBarry Smith    Level: beginner
1697d9274352SBarry Smith 
1698ec5066bdSBarry Smith    Notes:
169987497f52SBarry Smith    This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()`
1700ec5066bdSBarry Smith 
17012ef1f0ffSBarry Smith    The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object
17022ef1f0ffSBarry Smith 
17031cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()`
1704d9274352SBarry Smith S*/
1705e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring;
1706639f9d9dSBarry Smith 
1707014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *);
1708014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *);
1709014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer);
1710014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *);
1711014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **);
1712014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal);
1713014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring);
1714d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *);
1715014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec);
1716edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]);
1717f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring);
1718f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt);
1719bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *);
1720b1683b59SHong Zhang 
1721b1683b59SHong Zhang /*S
1722af27ebaaSBarry Smith    MatTransposeColoring - Object for computing a sparse matrix product $C = A*B^T$ via coloring
1723b1683b59SHong Zhang 
17242ef1f0ffSBarry Smith    Level: developer
1725b1683b59SHong Zhang 
17261cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()`
1727b1683b59SHong Zhang S*/
1728b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring;
1729b1683b59SHong Zhang 
1730014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *);
1731014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat);
1732014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat);
1733014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *);
1734b1683b59SHong Zhang 
1735d9274352SBarry Smith /*S
1736d9274352SBarry Smith    MatPartitioning - Object for managing the partitioning of a matrix or graph
1737d9274352SBarry Smith 
1738d9274352SBarry Smith    Level: beginner
1739d9274352SBarry Smith 
174087497f52SBarry Smith    Note:
174187497f52SBarry Smith    There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations
174287497f52SBarry Smith    via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`)
1743ec5066bdSBarry Smith 
1744b5e6e808SPierre Jolivet    Developer Note:
17452ef1f0ffSBarry Smith    It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed
1746ec5066bdSBarry Smith 
17471cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`,
17482ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
1749d9274352SBarry Smith S*/
175091e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning;
1751d9274352SBarry Smith 
175276bdecfbSBarry Smith /*J
17538f6c3df8SBarry Smith     MatPartitioningType - String with the name of a PETSc matrix partitioning
1754d9274352SBarry Smith 
1755d9274352SBarry Smith    Level: beginner
17560d04baf8SBarry Smith dm
17571cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`,
17582ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
175976bdecfbSBarry Smith J*/
176019fd82e9SBarry Smith typedef const char *MatPartitioningType;
17612692d6eeSBarry Smith #define MATPARTITIONINGCURRENT  "current"
1762aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE  "average"
17632692d6eeSBarry Smith #define MATPARTITIONINGSQUARE   "square"
17642692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis"
17652692d6eeSBarry Smith #define MATPARTITIONINGCHACO    "chaco"
17662692d6eeSBarry Smith #define MATPARTITIONINGPARTY    "party"
176750d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch"
176888d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch"
176971306c60Sjroman 
1770014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *);
177119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType);
1772014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt);
1773014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat);
1774252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt);
1775014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]);
1776014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]);
1777ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool);
1778ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *);
1779014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *);
1780fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *);
1781668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS);
1782f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *);
1783014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *);
1784bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning));
1785014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer);
1786fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]);
1787014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning);
178819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *);
1789ca161407SBarry Smith 
179027538973SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part);
1791014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning);
1792014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *);
17930752156aSBarry Smith 
17949371c9d4SSatish Balay typedef enum {
17959371c9d4SSatish Balay   MP_CHACO_MULTILEVEL = 1,
17969371c9d4SSatish Balay   MP_CHACO_SPECTRAL   = 2,
17979371c9d4SSatish Balay   MP_CHACO_LINEAR     = 4,
17989371c9d4SSatish Balay   MP_CHACO_RANDOM     = 5,
17999371c9d4SSatish Balay   MP_CHACO_SCATTERED  = 6
18009371c9d4SSatish Balay } MPChacoGlobalType;
18016a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[];
18029371c9d4SSatish Balay typedef enum {
18039371c9d4SSatish Balay   MP_CHACO_KERNIGHAN = 1,
18049371c9d4SSatish Balay   MP_CHACO_NONE      = 2
18059371c9d4SSatish Balay } MPChacoLocalType;
18066a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[];
18079371c9d4SSatish Balay typedef enum {
18089371c9d4SSatish Balay   MP_CHACO_LANCZOS = 0,
18099371c9d4SSatish Balay   MP_CHACO_RQI     = 1
18109371c9d4SSatish Balay } MPChacoEigenType;
18116a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[];
1812b6956c12SJose Roman 
1813014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType);
1814014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *);
1815014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType);
1816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *);
1817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal);
1818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType);
1819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *);
1820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal);
1821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *);
1822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt);
1823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *);
182471306c60Sjroman 
182571306c60Sjroman #define MP_PARTY_OPT "opt"
182671306c60Sjroman #define MP_PARTY_LIN "lin"
182771306c60Sjroman #define MP_PARTY_SCA "sca"
182871306c60Sjroman #define MP_PARTY_RAN "ran"
182971306c60Sjroman #define MP_PARTY_GBF "gbf"
183071306c60Sjroman #define MP_PARTY_GCF "gcf"
183171306c60Sjroman #define MP_PARTY_BUB "bub"
183271306c60Sjroman #define MP_PARTY_DEF "def"
1833014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *);
183471306c60Sjroman #define MP_PARTY_HELPFUL_SETS  "hs"
183571306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl"
183671306c60Sjroman #define MP_PARTY_NONE          "no"
1837014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *);
1838014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal);
1839014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool);
1840014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool);
184171306c60Sjroman 
18429371c9d4SSatish Balay typedef enum {
18439371c9d4SSatish Balay   MP_PTSCOTCH_DEFAULT,
18449371c9d4SSatish Balay   MP_PTSCOTCH_QUALITY,
18459371c9d4SSatish Balay   MP_PTSCOTCH_SPEED,
18469371c9d4SSatish Balay   MP_PTSCOTCH_BALANCE,
18479371c9d4SSatish Balay   MP_PTSCOTCH_SAFETY,
18489371c9d4SSatish Balay   MP_PTSCOTCH_SCALABILITY
18499371c9d4SSatish Balay } MPPTScotchStrategyType;
18506a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[];
1851e0f1cffaSJose Roman 
1852014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal);
1853014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *);
1854014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType);
1855014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *);
185671306c60Sjroman 
1857b43b03e9SMark F. Adams /*
18586294fa2bSFande Kong  * hierarchical partitioning
18596294fa2bSFande Kong  */
18604e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *);
18614e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *);
18624e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt);
18634e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt);
18646294fa2bSFande Kong 
1865014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *);
1866591294e4SBarry Smith 
18670752156aSBarry Smith /*
1868c786d857SStefano Zampini     If you add entries here you must also add them to src/mat/f90-mod/petscmat.h
1869c786d857SStefano Zampini     If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx
1870d4fbbf0eSBarry Smith */
18719371c9d4SSatish Balay typedef enum {
18729371c9d4SSatish Balay   MATOP_SET_VALUES               = 0,
18731c1c02c0SLois Curfman McInnes   MATOP_GET_ROW                  = 1,
18741c1c02c0SLois Curfman McInnes   MATOP_RESTORE_ROW              = 2,
18751c1c02c0SLois Curfman McInnes   MATOP_MULT                     = 3,
18761c1c02c0SLois Curfman McInnes   MATOP_MULT_ADD                 = 4,
18777c922b88SBarry Smith   MATOP_MULT_TRANSPOSE           = 5,
18787c922b88SBarry Smith   MATOP_MULT_TRANSPOSE_ADD       = 6,
18791c1c02c0SLois Curfman McInnes   MATOP_SOLVE                    = 7,
18801c1c02c0SLois Curfman McInnes   MATOP_SOLVE_ADD                = 8,
18817c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE          = 9,
18827c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE_ADD      = 10,
18831c1c02c0SLois Curfman McInnes   MATOP_LUFACTOR                 = 11,
18841c1c02c0SLois Curfman McInnes   MATOP_CHOLESKYFACTOR           = 12,
1885a714c06dSBarry Smith   MATOP_SOR                      = 13,
18861c1c02c0SLois Curfman McInnes   MATOP_TRANSPOSE                = 14,
18871c1c02c0SLois Curfman McInnes   MATOP_GETINFO                  = 15,
18881c1c02c0SLois Curfman McInnes   MATOP_EQUAL                    = 16,
18891c1c02c0SLois Curfman McInnes   MATOP_GET_DIAGONAL             = 17,
18901c1c02c0SLois Curfman McInnes   MATOP_DIAGONAL_SCALE           = 18,
18911c1c02c0SLois Curfman McInnes   MATOP_NORM                     = 19,
18921c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_BEGIN           = 20,
18931c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_END             = 21,
1894d519adbfSMatthew Knepley   MATOP_SET_OPTION               = 22,
1895d519adbfSMatthew Knepley   MATOP_ZERO_ENTRIES             = 23,
1896d519adbfSMatthew Knepley   MATOP_ZERO_ROWS                = 24,
1897d519adbfSMatthew Knepley   MATOP_LUFACTOR_SYMBOLIC        = 25,
1898d519adbfSMatthew Knepley   MATOP_LUFACTOR_NUMERIC         = 26,
1899d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27,
1900d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_NUMERIC  = 28,
1901e5f2d425SStefano Zampini   MATOP_SETUP                    = 29,
1902d519adbfSMatthew Knepley   MATOP_ILUFACTOR_SYMBOLIC       = 30,
1903d519adbfSMatthew Knepley   MATOP_ICCFACTOR_SYMBOLIC       = 31,
1904a5b7ff6bSBarry Smith   MATOP_GET_DIAGONAL_BLOCK       = 32,
1905e5f2d425SStefano Zampini   MATOP_SET_INF                  = 33,
1906d519adbfSMatthew Knepley   MATOP_DUPLICATE                = 34,
1907d519adbfSMatthew Knepley   MATOP_FORWARD_SOLVE            = 35,
1908d519adbfSMatthew Knepley   MATOP_BACKWARD_SOLVE           = 36,
1909d519adbfSMatthew Knepley   MATOP_ILUFACTOR                = 37,
1910d519adbfSMatthew Knepley   MATOP_ICCFACTOR                = 38,
1911d519adbfSMatthew Knepley   MATOP_AXPY                     = 39,
19127dae84e0SHong Zhang   MATOP_CREATE_SUBMATRICES       = 40,
1913d519adbfSMatthew Knepley   MATOP_INCREASE_OVERLAP         = 41,
1914d519adbfSMatthew Knepley   MATOP_GET_VALUES               = 42,
1915d519adbfSMatthew Knepley   MATOP_COPY                     = 43,
1916d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX              = 44,
1917d519adbfSMatthew Knepley   MATOP_SCALE                    = 45,
1918d519adbfSMatthew Knepley   MATOP_SHIFT                    = 46,
191935153367SBarry Smith   MATOP_DIAGONAL_SET             = 47,
19209d39f69dSJed Brown   MATOP_ZERO_ROWS_COLUMNS        = 48,
19219d39f69dSJed Brown   MATOP_SET_RANDOM               = 49,
1922d519adbfSMatthew Knepley   MATOP_GET_ROW_IJ               = 50,
1923d519adbfSMatthew Knepley   MATOP_RESTORE_ROW_IJ           = 51,
1924d519adbfSMatthew Knepley   MATOP_GET_COLUMN_IJ            = 52,
1925d519adbfSMatthew Knepley   MATOP_RESTORE_COLUMN_IJ        = 53,
1926d519adbfSMatthew Knepley   MATOP_FDCOLORING_CREATE        = 54,
1927d519adbfSMatthew Knepley   MATOP_COLORING_PATCH           = 55,
1928d519adbfSMatthew Knepley   MATOP_SET_UNFACTORED           = 56,
1929d519adbfSMatthew Knepley   MATOP_PERMUTE                  = 57,
1930d519adbfSMatthew Knepley   MATOP_SET_VALUES_BLOCKED       = 58,
19317dae84e0SHong Zhang   MATOP_CREATE_SUBMATRIX         = 59,
1932d519adbfSMatthew Knepley   MATOP_DESTROY                  = 60,
1933d519adbfSMatthew Knepley   MATOP_VIEW                     = 61,
1934d519adbfSMatthew Knepley   MATOP_CONVERT_FROM             = 62,
1935e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_63=63 */
19367bab7c10SHong Zhang   MATOP_MATMAT_MULT_SYMBOLIC    = 64,
19377bab7c10SHong Zhang   MATOP_MATMAT_MULT_NUMERIC     = 65,
1938d519adbfSMatthew Knepley   MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66,
1939d519adbfSMatthew Knepley   MATOP_SET_VALUES_LOCAL        = 67,
1940d519adbfSMatthew Knepley   MATOP_ZERO_ROWS_LOCAL         = 68,
1941d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX_ABS         = 69,
1942d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN_ABS         = 70,
1943d519adbfSMatthew Knepley   MATOP_CONVERT                 = 71,
1944e5f2d425SStefano Zampini   MATOP_HAS_OPERATION           = 72,
19459d39f69dSJed Brown   /* MATOP_PLACEHOLDER_73=73, */
1946d519adbfSMatthew Knepley   MATOP_SET_VALUES_ADIFOR = 74,
1947d519adbfSMatthew Knepley   MATOP_FD_COLORING_APPLY = 75,
1948d519adbfSMatthew Knepley   MATOP_SET_FROM_OPTIONS  = 76,
1949e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_77=77, */
1950e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_78=78, */
19519d39f69dSJed Brown   MATOP_FIND_ZERO_DIAGONALS       = 79,
1952d519adbfSMatthew Knepley   MATOP_MULT_MULTIPLE             = 80,
1953d519adbfSMatthew Knepley   MATOP_SOLVE_MULTIPLE            = 81,
1954d519adbfSMatthew Knepley   MATOP_GET_INERTIA               = 82,
1955d519adbfSMatthew Knepley   MATOP_LOAD                      = 83,
1956d519adbfSMatthew Knepley   MATOP_IS_SYMMETRIC              = 84,
1957d519adbfSMatthew Knepley   MATOP_IS_HERMITIAN              = 85,
1958d519adbfSMatthew Knepley   MATOP_IS_STRUCTURALLY_SYMMETRIC = 86,
1959820469bcSHong Zhang   MATOP_SET_VALUES_BLOCKEDLOCAL   = 87,
1960b41ce5d5SBarry Smith   MATOP_CREATE_VECS               = 88,
1961e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_89=89, */
1962d519adbfSMatthew Knepley   MATOP_MAT_MULT_SYMBOLIC = 90,
1963d519adbfSMatthew Knepley   MATOP_MAT_MULT_NUMERIC  = 91,
1964e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_92=92, */
1965d519adbfSMatthew Knepley   MATOP_PTAP_SYMBOLIC = 93,
1966d519adbfSMatthew Knepley   MATOP_PTAP_NUMERIC  = 94,
1967e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_95=95, */
1968bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96,
1969bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_NUMER = 97,
1970e5f2d425SStefano Zampini   MATOP_BIND_TO_CPU              = 98,
19717a3c3d58SStefano Zampini   MATOP_PRODUCTSETFROMOPTIONS    = 99,
19727a3c3d58SStefano Zampini   MATOP_PRODUCTSYMBOLIC          = 100,
19737a3c3d58SStefano Zampini   MATOP_PRODUCTNUMERIC           = 101,
1974d519adbfSMatthew Knepley   MATOP_CONJUGATE                = 102,
1975e5f2d425SStefano Zampini   MATOP_VIEW_NATIVE              = 103,
1976d519adbfSMatthew Knepley   MATOP_SET_VALUES_ROW           = 104,
1977d519adbfSMatthew Knepley   MATOP_REAL_PART                = 105,
1978bda6c4cbSBarry Smith   MATOP_IMAGINARY_PART           = 106,
1979bda6c4cbSBarry Smith   MATOP_GET_ROW_UPPER_TRIANGULAR = 107,
1980bda6c4cbSBarry Smith   MATOP_RESTORE_ROW_UPPER_TRIANG = 108,
1981bda6c4cbSBarry Smith   MATOP_MAT_SOLVE                = 109,
198229eadf9eSStefano Zampini   MATOP_MAT_SOLVE_TRANSPOSE      = 110,
1983d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN              = 111,
19840e8d04f7SBarry Smith   MATOP_GET_COLUMN_VECTOR        = 112,
1985d519adbfSMatthew Knepley   MATOP_MISSING_DIAGONAL         = 113,
19860e8d04f7SBarry Smith   MATOP_GET_SEQ_NONZERO_STRUCTUR = 114,
198789c6957cSBarry Smith   MATOP_CREATE                   = 115,
198889c6957cSBarry Smith   MATOP_GET_GHOSTS               = 116,
19890e8d04f7SBarry Smith   MATOP_GET_LOCAL_SUB_MATRIX     = 117,
19900e8d04f7SBarry Smith   MATOP_RESTORE_LOCALSUB_MATRIX  = 118,
1991eeffb40dSHong Zhang   MATOP_MULT_DIAGONAL_BLOCK      = 119,
19920e8d04f7SBarry Smith   MATOP_HERMITIAN_TRANSPOSE      = 120,
19930e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANSPOSE = 121,
19940e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANS_ADD = 122,
19950e8d04f7SBarry Smith   MATOP_GET_MULTI_PROC_BLOCK     = 123,
19969d39f69dSJed Brown   MATOP_FIND_NONZERO_ROWS        = 124,
19970e8d04f7SBarry Smith   MATOP_GET_COLUMN_NORMS         = 125,
19989d39f69dSJed Brown   MATOP_INVERT_BLOCK_DIAGONAL    = 126,
1999e5f2d425SStefano Zampini   MATOP_INVERT_VBLOCK_DIAGONAL   = 127,
2000b41ce5d5SBarry Smith   MATOP_CREATE_SUB_MATRICES_MPI  = 128,
20012b8ad9a3SHong Zhang   MATOP_SET_VALUES_BATCH         = 129,
2002e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_130=130, */
20030e8d04f7SBarry Smith   MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131,
2004e9b602ebSSatish Balay   MATOP_TRANSPOSE_MAT_MULT_NUMER = 132,
20050e8d04f7SBarry Smith   MATOP_TRANSPOSE_COLORING_CREAT = 133,
20060e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_SPT = 134,
20070e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_DEN = 135,
2008e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_136=136, */
20090e8d04f7SBarry Smith   MATOP_RART_SYMBOLIC         = 137,
20100e8d04f7SBarry Smith   MATOP_RART_NUMERIC          = 138,
2011e09a3074SHong Zhang   MATOP_SET_BLOCK_SIZES       = 139,
2012f9426fe0SMark Adams   MATOP_AYPX                  = 140,
20131919a2e2SJed Brown   MATOP_RESIDUAL              = 141,
20149c8f2541SHong Zhang   MATOP_FDCOLORING_SETUP      = 142,
2015e5f2d425SStefano Zampini   MATOP_FIND_OFFBLOCK_ENTRIES = 143,
20162d033e1fSHong Zhang   MATOP_MPICONCATENATESEQ     = 144,
2017bb01b7b0SPatrick Sanan   MATOP_DESTROYSUBMATRICES    = 145,
2018e265f6d6SPatrick Sanan   MATOP_TRANSPOSE_SOLVE       = 146,
2019e265f6d6SPatrick Sanan   MATOP_GET_VALUES_LOCAL      = 147
2020fae171e0SBarry Smith } MatOperation;
20210c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void));
2022976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void));
2023976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *);
202494342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *);
2025edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatProductClear()", ) static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A)
2026d71ae5a4SJacob Faibussowitsch {
20279371c9d4SSatish Balay   return MatProductClear(A);
20289371c9d4SSatish Balay }
2029014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void));
2030014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void));
2031014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *);
2032800f99ffSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *));
2033db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType);
2034f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
2035f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
20360c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat);
2037b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType);
2038b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *);
2039112a2221SBarry Smith 
204090ace30eSBarry Smith /*
204190ace30eSBarry Smith    Codes for matrices stored on disk. By default they are
204290ace30eSBarry Smith    stored in a universal format. By changing the format with
20436a9046bcSBarry Smith    PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will
204490ace30eSBarry Smith    be stored in a way natural for the matrix, for example dense matrices
204590ace30eSBarry Smith    would be stored as dense. Matrices stored this way may only be
2046f4403165SShri Abhyankar    read into matrices of the same type.
204790ace30eSBarry Smith */
204890ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1
204990ace30eSBarry Smith 
2050014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal);
205175d48cdbSStefano Zampini 
20528546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType);
205375d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
2054*4f58015eSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetAllowRepeated(Mat, PetscBool);
2055*4f58015eSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetAllowRepeated(Mat, PetscBool *);
205675d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool);
2057f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool);
2058014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *);
20593b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *);
2060014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat);
2061e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
20621f4e1ec7SBarry Smith 
2063d9274352SBarry Smith /*S
2064d9274352SBarry Smith    MatNullSpace - Object that removes a null space from a vector, i.e.
2065cb6b9846SMatthew Knepley                   orthogonalizes the vector to a subspace
2066d9274352SBarry Smith 
2067f7a9e4ceSBarry Smith    Level: advanced
2068d9274352SBarry Smith 
20691cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()`
2070d9274352SBarry Smith S*/
207174637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace;
2072d9274352SBarry Smith 
2073014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *);
2074014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *);
2075014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *);
2076d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec);
2077014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *);
20785fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *);
20795fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace);
2080014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace);
2081014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace);
2082014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *);
20834849c82aSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNullSpaces(PetscInt, Mat[], MatNullSpace *[]);
20844849c82aSBarry Smith PETSC_EXTERN PetscErrorCode MatRestoreNullSpaces(PetscInt, Mat[], MatNullSpace *[]);
2085014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *);
2086014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer);
2087014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **);
2088014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *);
208974637425SBarry Smith 
2090014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS);
2091014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal);
2092014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *);
20933f1d51d7SBarry Smith 
2094014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *);
2095014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *);
2096014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *);
2097c4f061fbSSatish Balay 
20980bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *);
20990bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *);
21000bacdadaSStefano Zampini 
2101edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperator()", ) static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B)
2102d71ae5a4SJacob Faibussowitsch {
2103f22e26b7SPierre Jolivet   return MatComputeOperator(A, PETSC_NULLPTR, B);
21049371c9d4SSatish Balay }
2105edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperatorTranspose()", ) static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B)
2106d71ae5a4SJacob Faibussowitsch {
2107f22e26b7SPierre Jolivet   return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B);
21089371c9d4SSatish Balay }
2109b0a32e0cSBarry Smith 
211049bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *);
211149bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *);
2112a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **);
2113a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2114a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **);
2115a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **);
2116a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **);
2117a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2118a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **);
2119a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **);
2120dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat);
2121dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]);
2122dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]);
2123910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *);
212449bd79ccSDebojyoti Ghosh 
2125014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec);
212604f1ad80SBarry Smith 
21274bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDInitializePackage(void);
21284bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDFinalizePackage(void);
21294bf303faSJacob Faibussowitsch 
2130014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2131014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec);
2132014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *);
2133014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *));
2134014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec));
2135014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt);
2136014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat);
2137014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal);
2138014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt);
2139014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *);
2140014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]);
2141014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *);
2142014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *);
2143e884886fSBarry Smith 
21446370053bSBarry Smith /*S
21456370053bSBarry Smith     MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free
21466370053bSBarry Smith               Jacobian vector products
2147e884886fSBarry Smith 
21482ef1f0ffSBarry Smith     Level: developer
21492ef1f0ffSBarry Smith 
215095452b02SPatrick Sanan     Notes:
215187497f52SBarry Smith     `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure
21526370053bSBarry Smith 
21532ef1f0ffSBarry Smith      MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure
21546370053bSBarry Smith 
21552ef1f0ffSBarry Smith     This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator`
21566370053bSBarry Smith 
21571cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`,
21582ef1f0ffSBarry Smith           `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator`
21596370053bSBarry Smith S*/
2160e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD;
2161e884886fSBarry Smith 
216276bdecfbSBarry Smith /*J
21632ef1f0ffSBarry Smith    MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function
2164e884886fSBarry Smith 
216516a05f60SBarry Smith    Values:
2166af27ebaaSBarry Smith +   `MATMFFD_DS` - an algorithm described by Dennis and Schnabel {cite}`dennis:83`
2167af27ebaaSBarry Smith -   `MATMFFD_WP` - the Walker-Pernice {cite}`pw98` strategy.
216816a05f60SBarry Smith 
2169e884886fSBarry Smith    Level: beginner
2170e884886fSBarry Smith 
21711cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()`
217276bdecfbSBarry Smith J*/
217319fd82e9SBarry Smith typedef const char *MatMFFDType;
2174e884886fSBarry Smith #define MATMFFD_DS "ds"
2175e884886fSBarry Smith #define MATMFFD_WP "wp"
2176e884886fSBarry Smith 
217719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType);
2178bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD));
2179e884886fSBarry Smith 
2180014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal);
2181014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool);
2182e884886fSBarry Smith 
218361ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType);
218461ab5df0SBarry Smith 
2185014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *);
2186014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *);
21877dbadf16SMatthew Knepley 
218853022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS
21898434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscScalar(MatH2OpusKernelFn)(PetscInt, PetscReal[], PetscReal[], void *);
21908434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatH2OpusKernelFn *MatH2OpusKernel;
21918434afd1SBarry Smith PETSC_EXTERN PetscErrorCode                     MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernelFn *, void *, PetscReal, PetscInt, PetscInt, Mat *);
219253022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *);
219353022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal);
219453022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusOrthogonalize(Mat);
219553022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusCompress(Mat, PetscReal);
219653022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusSetNativeMult(Mat, PetscBool);
219753022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusGetNativeMult(Mat, PetscBool *);
219853022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusGetIndexMap(Mat, IS *);
219953022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *);
2200300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar);
2201a0d2e7d8SStefano Zampini #endif
2202a0d2e7d8SStefano Zampini 
2203c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL
22048434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode(MatHtoolKernelFn)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *);
22058434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatHtoolKernelFn *MatHtoolKernel;
22068434afd1SBarry Smith PETSC_EXTERN PetscErrorCode                    MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernelFn *, void *, Mat *);
22078434afd1SBarry Smith PETSC_EXTERN PetscErrorCode                    MatHtoolSetKernel(Mat, MatHtoolKernelFn *, void *);
220898e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode                    MatHtoolGetPermutationSource(Mat, IS *);
220998e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode                    MatHtoolGetPermutationTarget(Mat, IS *);
221098e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode                    MatHtoolUsePermutation(Mat, PetscBool);
22112ef1f0ffSBarry Smith 
2212c7a4214aSPierre Jolivet /*E
221387497f52SBarry Smith    MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL`
2214c7a4214aSPierre Jolivet 
2215c7a4214aSPierre Jolivet    Values:
221687497f52SBarry Smith +  `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation
221787497f52SBarry Smith .  `MAT_HTOOL_COMPRESSOR_FULL_ACA`                 - full adaptive cross approximation
221887497f52SBarry Smith -  `MAT_HTOOL_COMPRESSOR_SVD`                      - singular value decomposition
2219c7a4214aSPierre Jolivet 
222016a05f60SBarry Smith    Level: intermediate
222116a05f60SBarry Smith 
22221cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType`
2223c7a4214aSPierre Jolivet E*/
22249371c9d4SSatish Balay typedef enum {
22259371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA,
22269371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_FULL_ACA,
22279371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SVD
22289371c9d4SSatish Balay } MatHtoolCompressorType;
22292ef1f0ffSBarry Smith 
223098e73e17SPierre Jolivet /*E
223187497f52SBarry Smith    MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL`
223298e73e17SPierre Jolivet 
223398e73e17SPierre Jolivet    Values:
223487497f52SBarry Smith +  `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default)    - axis computed via principle component analysis, split uniformly
223587497f52SBarry Smith .  `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC`            - axis computed via principle component analysis, split barycentrically
223687497f52SBarry Smith .  `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR`   - axis along the largest extent of the bounding box, split uniformly
223787497f52SBarry Smith -  `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically
223898e73e17SPierre Jolivet 
223916a05f60SBarry Smith    Level: intermediate
224016a05f60SBarry Smith 
22412ef1f0ffSBarry Smith    Note:
22422ef1f0ffSBarry Smith    Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types
224398e73e17SPierre Jolivet 
22441cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType`
224598e73e17SPierre Jolivet E*/
22469371c9d4SSatish Balay typedef enum {
22479371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_REGULAR,
22489371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC,
22499371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR,
22509371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC
22519371c9d4SSatish Balay } MatHtoolClusteringType;
2252c7a4214aSPierre Jolivet #endif
2253c7a4214aSPierre Jolivet 
225497969023SHong Zhang #ifdef PETSC_HAVE_MUMPS
2255014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt);
2256bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *);
2257b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal);
2258bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *);
2259bc6112feSHong Zhang 
2260ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *);
2261ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *);
2262ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *);
2263ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *);
22645c0bae8cSAshish Patel PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **);
226589a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat);
22660e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat);
226797969023SHong Zhang #endif
226823a5497aSJed Brown 
2269b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO
2270d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt);
2271b500a6b7SJose David Bermeol #endif
2272b500a6b7SJose David Bermeol 
2273d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO
2274d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt);
2275d305a81bSVasiliy Kozyrev #endif
2276d305a81bSVasiliy Kozyrev 
2277d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU
2278014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal);
2279d954db57SHong Zhang #endif
2280d954db57SHong Zhang 
2281fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST
2282fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *);
2283fb785984SHong Zhang #endif
2284fb785984SHong Zhang 
2285575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK
2286542aee0fSPieter Ghysels /*E
228729e0a805SPieter Ghysels     MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK`
2288542aee0fSPieter Ghysels 
22892ef1f0ffSBarry Smith     Values:
22902ef1f0ffSBarry Smith +  `MAT_STRUMPACK_NATURAL`   - use the current ordering
22912ef1f0ffSBarry Smith .  `MAT_STRUMPACK_METIS`     - use MeTis to compute an ordering
22922ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PARMETIS`  - use ParMeTis to compute an ordering
22932ef1f0ffSBarry Smith .  `MAT_STRUMPACK_SCOTCH`    - use Scotch to compute an ordering
22942ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PTSCOTCH`  - use parallel Scotch to compute an ordering
229529e0a805SPieter Ghysels .  `MAT_STRUMPACK_RCM`       - use an RCM ordering
229629e0a805SPieter Ghysels .  `MAT_STRUMPACK_GEOMETRIC` - use a geometric ordering (needs mesh info from user)
229729e0a805SPieter Ghysels .  `MAT_STRUMPACK_AMD`       - approximate minimum degree
229829e0a805SPieter Ghysels .  `MAT_STRUMPACK_MMD`       - multiple minimum degree
229929e0a805SPieter Ghysels .  `MAT_STRUMPACK_AND`       - approximate nested dissection
230029e0a805SPieter Ghysels .  `MAT_STRUMPACK_MLF`       - minimum local fill
230129e0a805SPieter Ghysels -  `MAT_STRUMPACK_SPECTRAL`  - spectral nested dissection
23022ef1f0ffSBarry Smith 
230316a05f60SBarry Smith     Level: intermediate
230416a05f60SBarry Smith 
23052ef1f0ffSBarry Smith     Developer Note:
23062ef1f0ffSBarry Smith     Should be called `MatSTRUMPACKReorderingType`
23072ef1f0ffSBarry Smith 
230829e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetReordering()`
2309542aee0fSPieter Ghysels E*/
23109371c9d4SSatish Balay typedef enum {
231129e0a805SPieter Ghysels   MAT_STRUMPACK_NATURAL,
231229e0a805SPieter Ghysels   MAT_STRUMPACK_METIS,
231329e0a805SPieter Ghysels   MAT_STRUMPACK_PARMETIS,
231429e0a805SPieter Ghysels   MAT_STRUMPACK_SCOTCH,
231529e0a805SPieter Ghysels   MAT_STRUMPACK_PTSCOTCH,
231629e0a805SPieter Ghysels   MAT_STRUMPACK_RCM,
231729e0a805SPieter Ghysels   MAT_STRUMPACK_GEOMETRIC,
231829e0a805SPieter Ghysels   MAT_STRUMPACK_AMD,
231929e0a805SPieter Ghysels   MAT_STRUMPACK_MMD,
232029e0a805SPieter Ghysels   MAT_STRUMPACK_AND,
232129e0a805SPieter Ghysels   MAT_STRUMPACK_MLF,
232229e0a805SPieter Ghysels   MAT_STRUMPACK_SPECTRAL
23239371c9d4SSatish Balay } MatSTRUMPACKReordering;
23242ef1f0ffSBarry Smith 
232534f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering);
232629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetReordering(Mat, MatSTRUMPACKReordering *);
232729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricNxyz(Mat, PetscInt, PetscInt, PetscInt);
232829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricComponents(Mat, PetscInt);
232929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricWidth(Mat, PetscInt);
2330575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool);
233129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetColPerm(Mat, PetscBool *);
233229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGPU(Mat, PetscBool);
233329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetGPU(Mat, PetscBool *);
233429e0a805SPieter Ghysels 
233529e0a805SPieter Ghysels /*E
233629e0a805SPieter Ghysels     MatSTRUMPACKCompressionType - Compression used in the approximate sparse factorization solver `MATSOLVERSTRUMPACK`
233729e0a805SPieter Ghysels 
233829e0a805SPieter Ghysels     Values:
233929e0a805SPieter Ghysels +  `MAT_STRUMPACK_COMPRESSION_TYPE_NONE`          - no compression, direct solver
234029e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_HSS`           - hierarchically semi-separable
234129e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_BLR`           - block low rank
234229e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_HODLR`         - hierarchically off-diagonal low rank (requires ButterfyPACK support, configure with --download-butterflypack)
234329e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR`     - hybrid of BLR and HODLR (requires ButterfyPACK support, configure with --download-butterflypack)
234429e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR` - hybrid of lossy (ZFP), BLR and HODLR (requires ButterfyPACK and ZFP support, configure with --download-butterflypack --download-zfp)
234529e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS`      - lossless compression (requires ZFP support, configure with --download-zfp)
234629e0a805SPieter Ghysels -  `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY`         - lossy compression (requires ZFP support, configure with --download-zfp)
234729e0a805SPieter Ghysels 
234829e0a805SPieter Ghysels     Level: intermediate
234929e0a805SPieter Ghysels 
235029e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetCompression()`
235129e0a805SPieter Ghysels E*/
235229e0a805SPieter Ghysels typedef enum {
235329e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_NONE,
235429e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_HSS,
235529e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_BLR,
235629e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_HODLR,
235729e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR,
235829e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR,
235929e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS,
236029e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY
236129e0a805SPieter Ghysels } MatSTRUMPACKCompressionType;
236229e0a805SPieter Ghysels 
236329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompression(Mat, MatSTRUMPACKCompressionType);
236429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompression(Mat, MatSTRUMPACKCompressionType *);
236529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompRelTol(Mat, PetscReal);
236629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompRelTol(Mat, PetscReal *);
236729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompAbsTol(Mat, PetscReal);
236829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompAbsTol(Mat, PetscReal *);
236929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompMinSepSize(Mat, PetscInt);
237029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompMinSepSize(Mat, PetscInt *);
237129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLeafSize(Mat, PetscInt);
237229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLeafSize(Mat, PetscInt *);
237329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLossyPrecision(Mat, PetscInt);
237429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLossyPrecision(Mat, PetscInt *);
237529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompButterflyLevels(Mat, PetscInt);
237629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompButterflyLevels(Mat, PetscInt *);
2377575704cbSPieter Ghysels #endif
2378575704cbSPieter Ghysels 
2379b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool);
23802216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *);
2381edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 13, 0, "MatBindToCPU()", ) static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg)
2382d71ae5a4SJacob Faibussowitsch {
23839371c9d4SSatish Balay   return MatBindToCPU(A, flg);
23849371c9d4SSatish Balay }
238565a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool);
2386e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *);
2387e7e92044SBarry Smith 
2388aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA
23893f9c0db1SPaul Mullowney /*E
23902ef1f0ffSBarry Smith     MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU)
23912692e278SPaul Mullowney     matrices.
2392e057df02SPaul Mullowney 
23932ef1f0ffSBarry Smith     Values:
239487497f52SBarry Smith +   `MAT_CUSPARSE_CSR` - Compressed Sparse Row
239587497f52SBarry Smith .   `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later).
239687497f52SBarry Smith -   `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later).
2397e057df02SPaul Mullowney 
2398e057df02SPaul Mullowney     Level: intermediate
2399e057df02SPaul Mullowney 
24001cc06b55SBarry Smith .seealso: [](ch_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation`
2401e057df02SPaul Mullowney E*/
2402e057df02SPaul Mullowney 
24039371c9d4SSatish Balay typedef enum {
24049371c9d4SSatish Balay   MAT_CUSPARSE_CSR,
24059371c9d4SSatish Balay   MAT_CUSPARSE_ELL,
24069371c9d4SSatish Balay   MAT_CUSPARSE_HYB
24079371c9d4SSatish Balay } MatCUSPARSEStorageFormat;
2408e057df02SPaul Mullowney 
2409e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */
2410e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[];
2411e057df02SPaul Mullowney 
24123f9c0db1SPaul Mullowney /*E
24132ef1f0ffSBarry Smith     MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU)
24142692e278SPaul Mullowney     matrices whose operation should use a particular storage format.
2415e057df02SPaul Mullowney 
24162ef1f0ffSBarry Smith     Values:
24174cf0e950SBarry Smith +   `MAT_CUSPARSE_MULT_DIAG`    - sets the storage format for the diagonal matrix in the parallel `MatMult()`
24184cf0e950SBarry Smith .   `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()`
24194cf0e950SBarry Smith .   `MAT_CUSPARSE_MULT`         - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()`
24202ef1f0ffSBarry Smith -   `MAT_CUSPARSE_ALL`          - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices
2421e057df02SPaul Mullowney 
2422e057df02SPaul Mullowney     Level: intermediate
2423e057df02SPaul Mullowney 
24241cc06b55SBarry Smith .seealso: [](ch_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat`
2425e057df02SPaul Mullowney E*/
24269371c9d4SSatish Balay typedef enum {
24279371c9d4SSatish Balay   MAT_CUSPARSE_MULT_DIAG,
24289371c9d4SSatish Balay   MAT_CUSPARSE_MULT_OFFDIAG,
24299371c9d4SSatish Balay   MAT_CUSPARSE_MULT,
24309371c9d4SSatish Balay   MAT_CUSPARSE_ALL
24319371c9d4SSatish Balay } MatCUSPARSEFormatOperation;
2432e057df02SPaul Mullowney 
243310e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
243410e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2435e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat);
2436365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool);
24375f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
24385f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
24395f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **);
24405f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **);
24415f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **);
24425f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **);
24435f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **);
24445f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **);
2445637a0070SStefano Zampini 
2446637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
2447637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
2448637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **);
2449637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **);
2450637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **);
2451637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **);
2452637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **);
2453637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **);
2454637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *);
2455d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *);
2456637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat);
24573d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *);
24582d1451d4SHong Zhang 
24592d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
24602d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
24619ae82921SPaul Mullowney #endif
24629ae82921SPaul Mullowney 
246347d993e7Ssuyashtn #ifdef PETSC_HAVE_HIP
246447d993e7Ssuyashtn /*E
24652ef1f0ffSBarry Smith     MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU)
246647d993e7Ssuyashtn     matrices.
246747d993e7Ssuyashtn 
24682ef1f0ffSBarry Smith     Values:
24692ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_CSR` - Compressed Sparse Row
24702ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_ELL` - Ellpack
24712ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format
247247d993e7Ssuyashtn 
247316a05f60SBarry Smith     Level: intermediate
247416a05f60SBarry Smith 
24751cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation`
247647d993e7Ssuyashtn E*/
247747d993e7Ssuyashtn 
247847d993e7Ssuyashtn typedef enum {
247947d993e7Ssuyashtn   MAT_HIPSPARSE_CSR,
248047d993e7Ssuyashtn   MAT_HIPSPARSE_ELL,
248147d993e7Ssuyashtn   MAT_HIPSPARSE_HYB
248247d993e7Ssuyashtn } MatHIPSPARSEStorageFormat;
248347d993e7Ssuyashtn 
248447d993e7Ssuyashtn /* these will be strings associated with enumerated type defined above */
248547d993e7Ssuyashtn PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[];
248647d993e7Ssuyashtn 
248747d993e7Ssuyashtn /*E
24882ef1f0ffSBarry Smith     MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU)
248947d993e7Ssuyashtn     matrices whose operation should use a particular storage format.
249047d993e7Ssuyashtn 
24912ef1f0ffSBarry Smith     Values:
24922ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_MULT_DIAG`    - sets the storage format for the diagonal matrix in the parallel `MatMult()`
24934cf0e950SBarry Smith .   `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()`
24942ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_MULT`         - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()`
24952ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_ALL`          - sets the storage format for all HIPSPARSE (GPU) matrices
24962ef1f0ffSBarry Smith 
249716a05f60SBarry Smith     Level: intermediate
249816a05f60SBarry Smith 
24991cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat`
250047d993e7Ssuyashtn E*/
250147d993e7Ssuyashtn typedef enum {
250247d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_DIAG,
250347d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_OFFDIAG,
250447d993e7Ssuyashtn   MAT_HIPSPARSE_MULT,
250547d993e7Ssuyashtn   MAT_HIPSPARSE_ALL
250647d993e7Ssuyashtn } MatHIPSPARSEFormatOperation;
250747d993e7Ssuyashtn 
250847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
250947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
251047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat);
251147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool);
251247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
251347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
251447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **);
251547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **);
251647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **);
251747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **);
251847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **);
251947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **);
252047d993e7Ssuyashtn 
252147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
252247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
252347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **);
252447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **);
252547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **);
252647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **);
252747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **);
252847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **);
252947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *);
253047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *);
253147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat);
25323d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *);
253347d993e7Ssuyashtn #endif
253447d993e7Ssuyashtn 
2535d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL)
2536d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2537d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2538d67ff14aSKarl Rupp #endif
2539d67ff14aSKarl Rupp 
25404bf303faSJacob Faibussowitsch #if PetscDefined(HAVE_KOKKOS)
25414bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
25424bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
25434bf303faSJacob Faibussowitsch #endif
25444bf303faSJacob Faibussowitsch 
254554efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW)
2546014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec);
2547014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec);
25482a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *);
254954efbe56SHong Zhang #endif
255054efbe56SHong Zhang 
2551d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
2552d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2553d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt);
2554d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *);
2555d24d4204SJose E. Roman #endif
2556d24d4204SJose E. Roman 
2557014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *);
2558014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *);
2559014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]);
2560014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]);
2561014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***);
2562014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *);
256319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType);
2564014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]);
2565014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat);
2566d8588912SDave May 
25672ce66baaSPierre Jolivet PETSC_EXTERN PetscErrorCode MatFilter(Mat, PetscReal, PetscBool, PetscBool);
25682ce66baaSPierre Jolivet PETSC_DEPRECATED_FUNCTION(3, 20, 0, "MatFilter()", ) static inline PetscErrorCode MatChop(Mat A, PetscReal tol)
25692ce66baaSPierre Jolivet {
25702ce66baaSPierre Jolivet   return MatFilter(A, tol, PETSC_FALSE, PETSC_FALSE);
25712ce66baaSPierre Jolivet }
2572e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *);
25734325cce7SMatthew G Knepley 
2574b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **);
257553dd7562SDmitry Karpeev 
2576c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat);
2577c094ef40SMatthew G. Knepley 
257802218ef1SBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderMerge(Mat, Mat *);
2579539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *);
25801a2c6b5cSJunchao Zhang 
25817ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *);
258272833a62Smarkadams4 
2583e02fb3cdSMark Adams PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, PetscInt, PetscInt[], Mat *);
258458c11ad4SPierre Jolivet PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat, PetscBool);
2585ad6ad4e1SHansol  Suh 
2586d16ceb75SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *);
25873444e80cSBarry Smith 
25883444e80cSBarry Smith PETSC_EXTERN PetscErrorCode MatSetHPL(Mat, int);
25893444e80cSBarry Smith #define PETSCBMHPL "hpl"
2590