12eac72dbSBarry Smith /* 22eac72dbSBarry Smith Include file for the matrix component of PETSc 32eac72dbSBarry Smith */ 426bd1501SBarry Smith #ifndef PETSCMAT_H 526bd1501SBarry Smith #define PETSCMAT_H 6ac09b921SBarry Smith 72c8e378dSBarry Smith #include <petscvec.h> 82eac72dbSBarry Smith 9ac09b921SBarry Smith /* SUBMANSEC = Mat */ 10ac09b921SBarry Smith 11d9274352SBarry Smith /*S 128f6c3df8SBarry Smith Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without 138f6c3df8SBarry Smith an explicit sparse representation (such as matrix-free operators) 142eac72dbSBarry Smith 15d91e6319SBarry Smith Level: beginner 16d91e6319SBarry Smith 17db781477SPatrick Sanan .seealso: `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()` 18d9274352SBarry Smith S*/ 19d9274352SBarry Smith typedef struct _p_Mat* Mat; 20d9274352SBarry Smith 2176bdecfbSBarry Smith /*J 228f6c3df8SBarry Smith MatType - String with the name of a PETSc matrix type 23d9274352SBarry Smith 24d9274352SBarry Smith Level: beginner 25d9274352SBarry Smith 26db781477SPatrick Sanan .seealso: `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()` 2776bdecfbSBarry Smith J*/ 2819fd82e9SBarry Smith typedef const char* MatType; 29273d9f13SBarry Smith #define MATSAME "same" 305a11e1b2SBarry Smith #define MATMAIJ "maij" 31273d9f13SBarry Smith #define MATSEQMAIJ "seqmaij" 32273d9f13SBarry Smith #define MATMPIMAIJ "mpimaij" 3349bd79ccSDebojyoti Ghosh #define MATKAIJ "kaij" 3449bd79ccSDebojyoti Ghosh #define MATSEQKAIJ "seqkaij" 3549bd79ccSDebojyoti Ghosh #define MATMPIKAIJ "mpikaij" 36273d9f13SBarry Smith #define MATIS "is" 375a11e1b2SBarry Smith #define MATAIJ "aij" 38273d9f13SBarry Smith #define MATSEQAIJ "seqaij" 39273d9f13SBarry Smith #define MATMPIAIJ "mpiaij" 405a11e1b2SBarry Smith #define MATAIJCRL "aijcrl" 415a11e1b2SBarry Smith #define MATSEQAIJCRL "seqaijcrl" 425a11e1b2SBarry Smith #define MATMPIAIJCRL "mpiaijcrl" 439ae82921SPaul Mullowney #define MATAIJCUSPARSE "aijcusparse" 449ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE "seqaijcusparse" 459ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE "mpiaijcusparse" 468c3ff71bSJunchao Zhang #define MATAIJKOKKOS "aijkokkos" 478c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS "seqaijkokkos" 488c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS "mpiaijkokkos" 49d67ff14aSKarl Rupp #define MATAIJVIENNACL "aijviennacl" 50d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL "seqaijviennacl" 51d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL "mpiaijviennacl" 525a11e1b2SBarry Smith #define MATAIJPERM "aijperm" 535a11e1b2SBarry Smith #define MATSEQAIJPERM "seqaijperm" 545a11e1b2SBarry Smith #define MATMPIAIJPERM "mpiaijperm" 554dfdc2d9SRichard Tran Mills #define MATAIJSELL "aijsell" 564dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL "seqaijsell" 574dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL "mpiaijsell" 584a2a386eSRichard Tran Mills #define MATAIJMKL "aijmkl" 594a2a386eSRichard Tran Mills #define MATSEQAIJMKL "seqaijmkl" 604a2a386eSRichard Tran Mills #define MATMPIAIJMKL "mpiaijmkl" 61b5b72c8aSIrina Sokolova #define MATBAIJMKL "baijmkl" 62b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL "seqbaijmkl" 63b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL "mpibaijmkl" 64273d9f13SBarry Smith #define MATSHELL "shell" 65c1fff1c6SRichard Tran Mills #define MATCENTERING "centering" 665a11e1b2SBarry Smith #define MATDENSE "dense" 67637a0070SStefano Zampini #define MATDENSECUDA "densecuda" 68209238afSKris Buschelman #define MATSEQDENSE "seqdense" 69bfc799aaSStefano Zampini #define MATSEQDENSECUDA "seqdensecuda" 70273d9f13SBarry Smith #define MATMPIDENSE "mpidense" 71637a0070SStefano Zampini #define MATMPIDENSECUDA "mpidensecuda" 72db31f6deSJed Brown #define MATELEMENTAL "elemental" 73d24d4204SJose E. Roman #define MATSCALAPACK "scalapack" 745a11e1b2SBarry Smith #define MATBAIJ "baij" 75273d9f13SBarry Smith #define MATSEQBAIJ "seqbaij" 76273d9f13SBarry Smith #define MATMPIBAIJ "mpibaij" 77273d9f13SBarry Smith #define MATMPIADJ "mpiadj" 785a11e1b2SBarry Smith #define MATSBAIJ "sbaij" 79273d9f13SBarry Smith #define MATSEQSBAIJ "seqsbaij" 80273d9f13SBarry Smith #define MATMPISBAIJ "mpisbaij" 81cebc7f6cSBarry Smith #define MATMFFD "mffd" 82c8a8475eSBarry Smith #define MATNORMAL "normal" 83c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN "normalh" 84ab92ecdeSBarry Smith #define MATLRC "lrc" 852a6744ebSBarry Smith #define MATSCATTER "scatter" 86421e10b8SBarry Smith #define MATBLOCKMAT "blockmat" 87793850ffSBarry Smith #define MATCOMPOSITE "composite" 881f8c7532SHong Zhang #define MATFFT "fft" 891f8c7532SHong Zhang #define MATFFTW "fftw" 90e133240eSMatthew G Knepley #define MATSEQCUFFT "seqcufft" 91557cca28SSatish Balay #define MATTRANSPOSEMAT "transpose" 9272ca8751SBarry Smith #define MATSCHURCOMPLEMENT "schurcomplement" 931d6018f0SLisandro Dalcin #define MATPYTHON "python" 9463c07aadSStefano Zampini #define MATHYPRE "hypre" 95f91d8e95SBarry Smith #define MATHYPRESTRUCT "hyprestruct" 96a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT "hypresstruct" 97ee1cef2cSJed Brown #define MATSUBMATRIX "submatrix" 982c0dbf93SJed Brown #define MATLOCALREF "localref" 99d8588912SDave May #define MATNEST "nest" 100c094ef40SMatthew G. Knepley #define MATPREALLOCATOR "preallocator" 101d4002b98SHong Zhang #define MATSELL "sell" 102d4002b98SHong Zhang #define MATSEQSELL "seqsell" 103d4002b98SHong Zhang #define MATMPISELL "mpisell" 104a3b2e22bSHong Zhang #define MATDUMMY "dummy" 105cd929ea3SAlp Dener #define MATLMVM "lmvm" 10678e4361aSAlp Dener #define MATLMVMDFP "lmvmdfp" 10778e4361aSAlp Dener #define MATLMVMBFGS "lmvmbfgs" 10878e4361aSAlp Dener #define MATLMVMSR1 "lmvmsr1" 109864588a7SAlp Dener #define MATLMVMBROYDEN "lmvmbroyden" 110864588a7SAlp Dener #define MATLMVMBADBROYDEN "lmvmbadbroyden" 111864588a7SAlp Dener #define MATLMVMSYMBROYDEN "lmvmsymbroyden" 112864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN "lmvmsymbadbroyden" 113864588a7SAlp Dener #define MATLMVMDIAGBROYDEN "lmvmdiagbroyden" 1143423f386SBarry Smith #define MATCONSTANTDIAGONAL "constantdiagonal" 115c7a4214aSPierre Jolivet #define MATHTOOL "htool" 11653022affSStefano Zampini #define MATH2OPUS "h2opus" 117773941d6SBarry Smith 11876bdecfbSBarry Smith /*J 1193ca39a21SBarry Smith MatSolverType - String with the name of a PETSc matrix solver type. 1209989ab13SBarry Smith 121c2b89b5dSBarry Smith For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc 1229989ab13SBarry Smith 1239989ab13SBarry Smith Level: beginner 1249989ab13SBarry Smith 1253f498edaSToby Isaac Notes: MATSOLVERUMFPACK, MATSOLVERCHOLMOD, MATSOLVERKLU, MATSOLVERSPQR form the SuiteSparse package for which you can use --download-suitesparse 126c7ccbb75SBarry Smith 127db781477SPatrick Sanan .seealso: `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()` 12876bdecfbSBarry Smith J*/ 129ea799195SBarry Smith typedef const char* MatSolverType; 1302692d6eeSBarry Smith #define MATSOLVERSUPERLU "superlu" 1312692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST "superlu_dist" 13208f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK "strumpack" 1332692d6eeSBarry Smith #define MATSOLVERUMFPACK "umfpack" 13420db9a53SJed Brown #define MATSOLVERCHOLMOD "cholmod" 135d89f5e7aSBarry Smith #define MATSOLVERKLU "klu" 136418810c4SBarry Smith #define MATSOLVERSPARSEELEMENTAL "sparseelemental" 137d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL "elemental" 138d24d4204SJose E. Roman #define MATSOLVERSCALAPACK "scalapack" 1392692d6eeSBarry Smith #define MATSOLVERESSL "essl" 1402692d6eeSBarry Smith #define MATSOLVERLUSOL "lusol" 1412692d6eeSBarry Smith #define MATSOLVERMUMPS "mumps" 142d615f992SSatish Balay #define MATSOLVERMKL_PARDISO "mkl_pardiso" 143d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO "mkl_cpardiso" 1442692d6eeSBarry Smith #define MATSOLVERPASTIX "pastix" 1452692d6eeSBarry Smith #define MATSOLVERMATLAB "matlab" 1462692d6eeSBarry Smith #define MATSOLVERPETSC "petsc" 1472692d6eeSBarry Smith #define MATSOLVERBAS "bas" 1489ae82921SPaul Mullowney #define MATSOLVERCUSPARSE "cusparse" 149bddcd29dSMark Adams #define MATSOLVERCUSPARSEBAND "cusparseband" 150bfc799aaSStefano Zampini #define MATSOLVERCUDA "cuda" 151930e68a5SMark Adams #define MATSOLVERKOKKOS "kokkos" 1528f7e8f9dSMark Adams #define MATSOLVERKOKKOSDEVICE "kokkosdevice" 153a2fc1e05SToby Isaac #define MATSOLVERSPQR "spqr" 154c0cdd4a1SDahai Guo 155b24902e0SBarry Smith /*E 156b24902e0SBarry Smith MatFactorType - indicates what type of factorization is requested 157b24902e0SBarry Smith 158b24902e0SBarry Smith Level: beginner 159b24902e0SBarry Smith 160af0996ceSBarry Smith Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 161b24902e0SBarry Smith 162db781477SPatrick Sanan .seealso: `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()` 163b24902e0SBarry Smith E*/ 1643f498edaSToby Isaac typedef enum {MAT_FACTOR_NONE, MAT_FACTOR_LU, MAT_FACTOR_CHOLESKY, MAT_FACTOR_ILU, MAT_FACTOR_ICC, MAT_FACTOR_ILUDT, MAT_FACTOR_QR, MAT_FACTOR_NUM_TYPES} MatFactorType; 165014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[]; 166e92e720dSBarry Smith 167ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat,MatSolverType,MatFactorType,Mat*); 168ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat,MatSolverType,MatFactorType,PetscBool *); 169f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool*); 1709fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatFactorGetCanUseOrdering() (since version 3.15)") static inline PetscErrorCode MatFactorGetUseOrdering(Mat A,PetscBool *b) {return MatFactorGetCanUseOrdering(A,b);} 171ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat,MatSolverType*); 172014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat,MatFactorType*); 1737abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat,MatFactorType); 1742430ea28SJose E. Roman PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatSolverFunction)(Mat,MatFactorType,Mat*); 1752430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType,MatType,MatFactorType,MatSolverFunction); 1762430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType,MatType,MatFactorType,PetscBool*,PetscBool*,MatSolverFunction*); 17725ef9dfeSBarry Smith typedef MatSolverType MatSolverPackage PETSC_DEPRECATED_TYPEDEF("Use MatSolverType (since version 3.9)"); 1789fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSolverTypeRegister() (since version 3.9)") static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype,MatType mtype,MatFactorType ftype,MatSolverFunction f) 179c19b563cSJed Brown { return MatSolverTypeRegister(stype,mtype,ftype,f); } 1809fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSolverTypeGet() (since version 3.9)") static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype,MatType mtype,MatFactorType ftype,PetscBool *foundmtype,PetscBool *foundstype,MatSolverFunction *f) 181c19b563cSJed Brown { return MatSolverTypeGet(stype,mtype,ftype,foundmtype,foundstype,f); } 1829989ab13SBarry Smith 1834222ddf1SHong Zhang /*E 1844222ddf1SHong Zhang MatProductType - indicates what type of matrix product is requested 1854222ddf1SHong Zhang 1864222ddf1SHong Zhang Level: beginner 1874222ddf1SHong Zhang 188db781477SPatrick Sanan .seealso: `MatProductSetType()` 1894222ddf1SHong Zhang E*/ 1906718818eSStefano Zampini typedef enum {MATPRODUCT_UNSPECIFIED=0,MATPRODUCT_AB,MATPRODUCT_AtB,MATPRODUCT_ABt,MATPRODUCT_PtAP,MATPRODUCT_RARt,MATPRODUCT_ABC} MatProductType; 191544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[]; 1924222ddf1SHong Zhang 1934222ddf1SHong Zhang /*J 1944222ddf1SHong Zhang MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation 1954222ddf1SHong Zhang 1964222ddf1SHong Zhang Level: beginner 1974222ddf1SHong Zhang 198db781477SPatrick Sanan .seealso: `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType` 1994222ddf1SHong Zhang J*/ 2004222ddf1SHong Zhang typedef const char* MatProductAlgorithm; 2013e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT "default" 2023e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED "sorted" 2033e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE "scalable" 2043e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST "scalable_fast" 2053e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP "heap" 2063e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP "btheap" 2073e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED "llcondensed" 2083e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE "rowmerge" 2093e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT "outerproduct" 2103e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB "at*b" 2113e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP "rap" 2123e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE "nonscalable" 2133e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI "seqmpi" 2143e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND "backend" 2153e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING "overlapping" 2163e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED "merged" 2173e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE "allatonce" 2183e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged" 2193e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV "allgatherv" 2203e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC "cyclic" 2213e662e0bSHong Zhang #if defined(PETSC_HAVE_HYPRE) 2223e662e0bSHong Zhang #define MATPRODUCTALGORITHMHYPRE "hypre" 2233e662e0bSHong Zhang #endif 2244222ddf1SHong Zhang 2254222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat,Mat,Mat,Mat*); 2264222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat,Mat,Mat,Mat); 2274222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat,MatProductType); 2284222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat,MatProductAlgorithm); 2294222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat,PetscReal); 2304222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat); 2314222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat); 2324222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat); 2334222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat,Mat,Mat,Mat); 2344417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat); 2356718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat,PetscViewer); 236c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat,MatProductType*); 237c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat,Mat*,Mat*,Mat*); 2384222ddf1SHong Zhang 239c06d978dSMatthew Knepley /* Logging support */ 2400700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */ 241014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID; 242335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID; 243014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID; 244014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID; 245014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID; 246014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID; 247014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID; 248014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID; 249c06d978dSMatthew Knepley 250ceb03754SKris Buschelman /*E 2517dae84e0SHong Zhang MatReuse - Indicates if matrices obtained from a previous call to MatCreateSubMatrices(), MatCreateSubMatrix(), MatConvert() or several other functions 252cf37664fSBarry Smith are to be reused to store the new matrix values. 253cf37664fSBarry Smith 254cf37664fSBarry Smith $ MAT_INITIAL_MATRIX - create a new matrix 255cf37664fSBarry Smith $ MAT_REUSE_MATRIX - reuse the matrix created with a previous call that used MAT_INITIAL_MATRIX 256cf37664fSBarry Smith $ MAT_INPLACE_MATRIX - replace the first input matrix with the new matrix (not applicable to all functions) 257cf37664fSBarry Smith $ MAT_IGNORE_MATRIX - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions) 258ceb03754SKris Buschelman 259ceb03754SKris Buschelman Level: beginner 260ceb03754SKris Buschelman 261af0996ceSBarry Smith Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 262ceb03754SKris Buschelman 263db781477SPatrick Sanan .seealso: `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()` 264ceb03754SKris Buschelman E*/ 265511c6705SHong Zhang typedef enum {MAT_INITIAL_MATRIX,MAT_REUSE_MATRIX,MAT_IGNORE_MATRIX,MAT_INPLACE_MATRIX} MatReuse; 266ceb03754SKris Buschelman 2675494a064SHong Zhang /*E 2687dae84e0SHong Zhang MatCreateSubMatrixOption - Indicates if matrices obtained from a call to MatCreateSubMatrices() 269446c23c1SPierre Jolivet include the matrix values. Currently it is only used by MatGetSeqNonzeroStructure(). 2705494a064SHong Zhang 2715494a064SHong Zhang Level: beginner 2725494a064SHong Zhang 273db781477SPatrick Sanan .seealso: `MatGetSeqNonzeroStructure()` 2745494a064SHong Zhang E*/ 2757dae84e0SHong Zhang typedef enum {MAT_DO_NOT_GET_VALUES,MAT_GET_VALUES} MatCreateSubMatrixOption; 2765494a064SHong Zhang 277607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void); 278c06d978dSMatthew Knepley 279014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm,Mat*); 280014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat,PetscInt,PetscInt,PetscInt,PetscInt); 28119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat,MatType); 2820d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat,VecType*); 2830d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat,VecType); 284014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat); 285fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat,PetscObject,const char[]); 286bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[],PetscErrorCode(*)(Mat)); 28723bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[],const char[],const char[]); 288014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat,const char[]); 28926cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat,const char[]); 29026cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat,const char[]); 291014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat,const char[]); 292014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat,const char*[]); 29384d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat,PetscBool); 294f69a0ea3SMatthew Knepley 295140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList; 296140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList; 297140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList; 29828988994SBarry Smith 2993b224e63SBarry Smith /*E 300aa6c7ce3SBarry Smith MatStructure - Indicates if two matrices have the same nonzero structure 3013b224e63SBarry Smith 3023b224e63SBarry Smith Level: beginner 3033b224e63SBarry Smith 304531d0c6aSBarry Smith $ SAME_NONZERO_PATTERN - the two matrices have identical nonzero patterns 305531d0c6aSBarry Smith $ DIFFERENT_NONZERO_PATTERN - the two matrices may have different nonzero patterns 306531d0c6aSBarry Smith $ SUBSET_NONZERO_PATTERN - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix 307531d0c6aSBarry Smith $ UNKNOWN_NONZERO_PATTERN - there is no known relationship between the nonzero patterns. In this case the implementations may try to detect a relationship to optimize the operation 308531d0c6aSBarry Smith 309531d0c6aSBarry Smith Developer Notes: 310d60b7d5cSBarry Smith Any additions/changes here MUST also be made in src/mat/f90-mod/petscmat.h 3113b224e63SBarry Smith 312db781477SPatrick Sanan .seealso: `MatCopy()`, `MatAXPY()`, `MatAYPX()` 3133b224e63SBarry Smith E*/ 314d60b7d5cSBarry Smith typedef enum {DIFFERENT_NONZERO_PATTERN,SUBSET_NONZERO_PATTERN,SAME_NONZERO_PATTERN,UNKNOWN_NONZERO_PATTERN} MatStructure; 315d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[]; 3163b224e63SBarry Smith 3179779e05dSSatish Balay #if defined PETSC_HAVE_MKL_SPARSE 318ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 319ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 32080095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 321ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 32280095d54SIrina Sokolova #endif 323cd929ea3SAlp Dener 324d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 325d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 326d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat,PetscInt,const PetscInt[]); 327d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 32880095d54SIrina Sokolova 329014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm,PetscInt,PetscInt,PetscScalar[],Mat*); 330014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar[],Mat*); 331014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 332014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 333014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[],Mat*); 3348f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 335*6a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat,const PetscScalar []); 336014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],PetscInt[],PetscInt[],PetscScalar[],Mat*); 3373b00a383SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm,Mat,Mat,const PetscInt[],Mat*); 3383b00a383SHong Zhang 339014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 340014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 341014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[],Mat*); 3427e8381f9SStefano Zampini 34382a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat,PetscCount,const PetscInt[],const PetscInt[]); 34482a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat,PetscCount,PetscInt[],PetscInt[]); 3457e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat,const PetscScalar[],InsertMode); 346d21a29f3SJed Brown 347014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscInt[],Mat*); 348014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 349d21a29f3SJed Brown 350014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 351014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[],Mat *); 35238f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 353014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 3544cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscInt[],const PetscInt[]); 355dfb205c3SBarry Smith 356014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,void *,Mat*); 357c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm,PetscInt,PetscInt,Mat*); 358014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat,Mat*); 359c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat,Mat*); 360986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat,Mat,Vec,Mat,Mat*); 361267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat,Mat*,Mat*,Vec*,Mat*); 362c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,ISLocalToGlobalMapping,ISLocalToGlobalMapping,Mat*); 363014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 365c0cdd4a1SDahai Guo 366014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm,VecScatter,Mat*); 367014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat,VecScatter); 368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat,VecScatter*); 369014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt*,Mat*); 370014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat,Mat); 371014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat); 3728c8613bfSJakub Kruzik typedef enum {MAT_COMPOSITE_MERGE_RIGHT,MAT_COMPOSITE_MERGE_LEFT} MatCompositeMergeType; 3738c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat,MatCompositeMergeType); 374014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm,PetscInt,const Mat*,Mat*); 3756d7c1e57SBarry Smith typedef enum {MAT_COMPOSITE_ADDITIVE,MAT_COMPOSITE_MULTIPLICATIVE} MatCompositeType; 376014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat,MatCompositeType); 3776dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat,MatCompositeType*); 3783b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat,MatStructure); 3793b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat,MatStructure*); 3806d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat,PetscInt*); 3818b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat,PetscInt,Mat*); 38203049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat,const PetscScalar*); 3836d7c1e57SBarry Smith 38419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm,PetscInt,const PetscInt[],MatType,Mat*); 385014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm,PetscInt,const PetscInt[],Mat*); 386dedccee8SHong Zhang 387014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat,Mat*); 3888060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat,Mat*); 389d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat,Mat*); 39006511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat,Mat*); 391fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat,Mat*); 39265f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat,Mat*); 39354e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat,IS,IS,Mat*); 39454e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat,Mat,IS,IS); 395014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat,IS,IS,Mat*); 3963423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar,Mat*); 3971472f72bSBarry Smith 398978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE) 399d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 400978814f1SStefano Zampini #endif 401978814f1SStefano Zampini 402014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat,const char[]); 4031d6018f0SLisandro Dalcin 404846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat); 405014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat); 406014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat*); 407e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat,PetscObjectState*); 40821c89e3eSBarry Smith 409014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat); 410014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat); 411014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat); 412014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat,Mat*); 413014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat,PetscScalar*); 414713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat,const PetscScalar **); 4150da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat,PetscInt,const PetscInt*,PetscScalar*); 416479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat,Mat); 4178a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat,MatReuse,Mat*); 41899cafbc1SBarry Smith 4198ed539a5SBarry Smith /* ------------------------------------------------------------*/ 420014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 4218a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat,IS,IS,const PetscScalar[],InsertMode); 422014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 423014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat,PetscInt,const PetscScalar[]); 424014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat,PetscInt,const PetscScalar[]); 425014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat,PetscInt,PetscInt,PetscInt[],const PetscScalar[]); 42673a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat,PetscRandom); 42784cb2905SBarry Smith 4282ef4de8bSBarry Smith /*S 4292ef4de8bSBarry Smith MatStencil - Data structure (C struct) for storing information about a single row or 43062ef0227SBarry Smith column of a matrix as indexed on an associated grid. These are arguments to MatSetStencil() and MatSetBlockStencil() 43162ef0227SBarry Smith 43262ef0227SBarry Smith The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored). 43362ef0227SBarry Smith The c represents the the degrees of freedom at each grid point (the dof argument to DMDASetDOF()). If dof is 1 then this entry is ignored. 43462ef0227SBarry Smith 43562ef0227SBarry Smith For stencil access to vectors see DMDAVecGetArray(), DMDAVecGetArrayF90(). 436be479b30SJed Brown 437be479b30SJed Brown Fortran usage is different, see MatSetValuesStencil() for details. 4382ef4de8bSBarry Smith 4392ef4de8bSBarry Smith Level: beginner 4402ef4de8bSBarry Smith 441db781477SPatrick Sanan .seealso: `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()` 4422ef4de8bSBarry Smith S*/ 443435da068SBarry Smith typedef struct { 444c1ac3661SBarry Smith PetscInt k,j,i,c; 445435da068SBarry Smith } MatStencil; 4462ef4de8bSBarry Smith 447014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat,PetscInt,const MatStencil[],PetscInt,const MatStencil[],const PetscScalar[],InsertMode); 448014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat,PetscInt,const MatStencil[],PetscInt,const MatStencil[],const PetscScalar[],InsertMode); 449014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat,PetscInt,const PetscInt[],const PetscInt[],PetscInt); 450435da068SBarry Smith 451d91e6319SBarry Smith /*E 452d91e6319SBarry Smith MatAssemblyType - Indicates if the matrix is now to be used, or if you plan 45362ef0227SBarry Smith to continue to add or insert values to it 454d91e6319SBarry Smith 455d91e6319SBarry Smith Level: beginner 456d91e6319SBarry Smith 457db781477SPatrick Sanan .seealso: `MatAssemblyBegin()`, `MatAssemblyEnd()` 458d91e6319SBarry Smith E*/ 4596d4a8577SBarry Smith typedef enum {MAT_FLUSH_ASSEMBLY=1,MAT_FINAL_ASSEMBLY=0} MatAssemblyType; 460014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat,MatAssemblyType); 461014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat,MatAssemblyType); 462014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat,PetscBool *); 4634f9c727eSBarry Smith 464d91e6319SBarry Smith /*E 465d91e6319SBarry Smith MatOption - Options that may be set for a matrix and its behavior or storage 466d91e6319SBarry Smith 467d91e6319SBarry Smith Level: beginner 468d91e6319SBarry Smith 469af0996ceSBarry Smith Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 4700f8fb01aSBarry Smith Any additions/changes here must also be made in src/mat/interface/dlregismat.c in MatOptions[] 471d91e6319SBarry Smith 47295452b02SPatrick Sanan Developer Notes: 47395452b02SPatrick Sanan Entries that are negative need not be called collectively by all processes. 474382164b0SBarry Smith 475db781477SPatrick Sanan .seealso: `MatSetOption()` 476d91e6319SBarry Smith E*/ 477c5e4d11fSDmitry Karpeev typedef enum {MAT_OPTION_MIN = -3, 478c5e4d11fSDmitry Karpeev MAT_UNUSED_NONZERO_LOCATION_ERR = -2, 47992d4d306SBarry Smith MAT_ROW_ORIENTED = -1, 480382164b0SBarry Smith MAT_SYMMETRIC = 1, 481382164b0SBarry Smith MAT_STRUCTURALLY_SYMMETRIC = 2, 4828c78258cSHong Zhang MAT_FORCE_DIAGONAL_ENTRIES = 3, 483382164b0SBarry Smith MAT_IGNORE_OFF_PROC_ENTRIES = 4, 484382164b0SBarry Smith MAT_USE_HASH_TABLE = 5, 485382164b0SBarry Smith MAT_KEEP_NONZERO_PATTERN = 6, 486382164b0SBarry Smith MAT_IGNORE_ZERO_ENTRIES = 7, 487382164b0SBarry Smith MAT_USE_INODES = 8, 488382164b0SBarry Smith MAT_HERMITIAN = 9, 489382164b0SBarry Smith MAT_SYMMETRY_ETERNAL = 10, 490c5e4d11fSDmitry Karpeev MAT_NEW_NONZERO_LOCATION_ERR = 11, 491382164b0SBarry Smith MAT_IGNORE_LOWER_TRIANGULAR = 12, 492382164b0SBarry Smith MAT_ERROR_LOWER_TRIANGULAR = 13, 493382164b0SBarry Smith MAT_GETROW_UPPERTRIANGULAR = 14, 494382164b0SBarry Smith MAT_SPD = 15, 49592d4d306SBarry Smith MAT_NO_OFF_PROC_ZERO_ROWS = 16, 49692d4d306SBarry Smith MAT_NO_OFF_PROC_ENTRIES = 17, 49792d4d306SBarry Smith MAT_NEW_NONZERO_LOCATIONS = 18, 498c5e4d11fSDmitry Karpeev MAT_NEW_NONZERO_ALLOCATION_ERR = 19, 499c5e4d11fSDmitry Karpeev MAT_SUBSET_OFF_PROC_ENTRIES = 20, 500c10200c1SHong Zhang MAT_SUBMAT_SINGLEIS = 21, 501957cac9fSHong Zhang MAT_STRUCTURE_ONLY = 22, 502071fcb05SBarry Smith MAT_SORTED_FULL = 23, 5031a2c6b5cSJunchao Zhang MAT_FORM_EXPLICIT_TRANSPOSE = 24, 5041a2c6b5cSJunchao Zhang MAT_OPTION_MAX = 25} MatOption; 505e057df02SPaul Mullowney 5060f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions; 507014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOption(Mat,MatOption,PetscBool); 5087d68702bSBarry Smith PETSC_EXTERN PetscErrorCode MatGetOption(Mat,MatOption,PetscBool*); 509856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode MatPropagateSymmetryOptions(Mat,Mat); 51019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetType(Mat,MatType*); 51184cb2905SBarry Smith 512014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetValues(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar[]); 513014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRow(Mat,PetscInt,PetscInt *,const PetscInt *[],const PetscScalar*[]); 514014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRow(Mat,PetscInt,PetscInt *,const PetscInt *[],const PetscScalar*[]); 515014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowUpperTriangular(Mat); 516014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowUpperTriangular(Mat); 517014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnVector(Mat,Vec,PetscInt); 5188c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetArray(Mat,PetscScalar *[]); 5198f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayRead(Mat,const PetscScalar *[]); 520d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayWrite(Mat,PetscScalar *[]); 5218c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArray(Mat,PetscScalar *[]); 5228f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayRead(Mat,const PetscScalar *[]); 523d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayWrite(Mat,PetscScalar *[]); 52421e72a00SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetMaxRowNonzeros(Mat,PetscInt*); 525bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetValuesLocalFast(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 5264099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetType(Mat,MatType); 527ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatSeqAIJKron(Mat,Mat,MatReuse,Mat*); 528388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode MatSeqAIJRegister(const char[],PetscErrorCode (*)(Mat,MatType,MatReuse,Mat *)); 5294099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList; 530cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJGetArray(Mat,PetscScalar *[]); 531cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJRestoreArray(Mat,PetscScalar *[]); 5328397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJGetArray(Mat,PetscScalar *[]); 5338397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJRestoreArray(Mat,PetscScalar *[]); 5348c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArray(Mat,PetscScalar *[]); 5358c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArray(Mat,PetscScalar *[]); 536d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDensePlaceArray(Mat,const PetscScalar[]); 537d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseReplaceArray(Mat,const PetscScalar[]); 538d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseResetArray(Mat); 5398572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArrayRead(Mat,const PetscScalar *[]); 5408572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayRead(Mat,const PetscScalar *[]); 5416947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetArrayWrite(Mat,PetscScalar *[]); 5426947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWrite(Mat,PetscScalar *[]); 543014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSize(Mat,PetscInt *); 544014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSize(Mat,PetscInt); 545014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSizes(Mat,PetscInt *,PetscInt *); 546014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizes(Mat,PetscInt,PetscInt); 54733d57670SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizesFromMats(Mat,Mat,Mat); 5480da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetVariableBlockSizes(Mat,PetscInt,PetscInt*); 5490da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetVariableBlockSizes(Mat,PetscInt*,const PetscInt**); 5500da83c2eSBarry Smith 55186aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat,PetscInt,PetscScalar*[]); 55286aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat,PetscScalar*[]); 5536947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat,PetscInt,Vec*); 5546947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat,PetscInt,Vec*); 5556947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat,PetscInt,Vec*); 5566947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat,PetscInt,Vec*); 5576947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat,PetscInt,Vec*); 5586947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat,PetscInt,Vec*); 559a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat,PetscInt,PetscInt,PetscInt,PetscInt,Mat*); 5605ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat,Mat*); 5611620fd73SBarry Smith 562014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat,Vec,Vec); 563014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat,Vec,Vec); 564014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat,Vec,Vec,Vec); 565014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat,Vec,Vec); 566014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat,Vec,Vec); 567014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat,Mat,PetscReal,PetscBool *); 568014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat,Mat,PetscReal,PetscBool *); 569014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat,Vec,Vec,Vec); 570014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat,Vec,Vec,Vec); 571014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat,Mat,Mat); 572bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat,Mat,Mat); 573eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat,Mat,Mat); 574f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat,Vec,Vec,Vec); 575f5edf698SHong Zhang 576d91e6319SBarry Smith /*E 577d91e6319SBarry Smith MatDuplicateOption - Indicates if a duplicated sparse matrix should have 578d91e6319SBarry Smith its numerical values copied over or just its nonzero structure. 579d91e6319SBarry Smith 580d91e6319SBarry Smith Level: beginner 581d91e6319SBarry Smith 582af0996ceSBarry Smith Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 583d91e6319SBarry Smith 5840018da39SRichard Tran Mills $ MAT_DO_NOT_COPY_VALUES - Create a matrix using the same nonzero pattern as the original matrix, 5850018da39SRichard Tran Mills $ with zeros for the numerical values. 5860018da39SRichard Tran Mills $ MAT_COPY_VALUES - Create a matrix with the same nonzero pattern as the original matrix 5870018da39SRichard Tran Mills $ and with the same numerical values. 5880018da39SRichard Tran Mills $ MAT_SHARE_NONZERO_PATTERN - Create a matrix that shares the nonzero structure with the previous matrix 5890018da39SRichard Tran Mills $ and does not copy it, using zeros for the numerical values. The parent and 5900018da39SRichard Tran Mills $ child matrices will share their index (i and j) arrays, and you cannot 5910018da39SRichard Tran Mills $ insert new nonzero entries into either matrix. 5920018da39SRichard Tran Mills 59395452b02SPatrick Sanan Notes: 59495452b02SPatrick Sanan Many matrix types (including SeqAIJ) do not support the MAT_SHARE_NONZERO_PATTERN optimization; in 5950018da39SRichard Tran Mills this case the behavior is as if MAT_DO_NOT_COPY_VALUES has been specified. 59670dcbbb9SBarry Smith 597db781477SPatrick Sanan .seealso: `MatDuplicate()` 598d91e6319SBarry Smith E*/ 59970dcbbb9SBarry Smith typedef enum {MAT_DO_NOT_COPY_VALUES,MAT_COPY_VALUES,MAT_SHARE_NONZERO_PATTERN} MatDuplicateOption; 6002e8a6d31SBarry Smith 60119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat,MatType,MatReuse,Mat*); 602014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat,MatDuplicateOption,Mat*); 60394a9d846SBarry Smith 604014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat,Mat,MatStructure); 605014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat,PetscViewer); 606014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat,PetscReal,PetscBool *); 607014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat,PetscBool *); 608014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat,PetscReal,PetscBool *); 609014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat,PetscBool *,PetscBool *); 610014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat,PetscBool *,PetscBool *); 611014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat,PetscBool *,PetscInt *); 612014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer); 6137b80b807SBarry Smith 6141a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat,PetscInt,PetscBool ,PetscBool ,PetscInt*,const PetscInt *[],const PetscInt *[],PetscBool *); 6151a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat,PetscInt,PetscBool ,PetscBool ,PetscInt *,const PetscInt *[],const PetscInt *[],PetscBool *); 6161a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat,PetscInt,PetscBool ,PetscBool ,PetscInt*,const PetscInt *[],const PetscInt *[],PetscBool *); 6171a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat,PetscInt,PetscBool ,PetscBool ,PetscInt *,const PetscInt *[],const PetscInt *[],PetscBool *); 618d4fbbf0eSBarry Smith 619d91e6319SBarry Smith /*S 620d91e6319SBarry Smith MatInfo - Context of matrix information, used with MatGetInfo() 621d91e6319SBarry Smith 622d91e6319SBarry Smith In Fortran this is simply a double precision array of dimension MAT_INFO_SIZE 623d91e6319SBarry Smith 624d91e6319SBarry Smith Level: intermediate 625d91e6319SBarry Smith 626db781477SPatrick Sanan .seealso: `MatGetInfo()`, `MatInfoType` 627d91e6319SBarry Smith S*/ 6284e220ebcSLois Curfman McInnes typedef struct { 629b0a32e0cSBarry Smith PetscLogDouble block_size; /* block size */ 630b0a32e0cSBarry Smith PetscLogDouble nz_allocated,nz_used,nz_unneeded; /* number of nonzeros */ 631b0a32e0cSBarry Smith PetscLogDouble memory; /* memory allocated */ 632b0a32e0cSBarry Smith PetscLogDouble assemblies; /* number of matrix assemblies called */ 633b0a32e0cSBarry Smith PetscLogDouble mallocs; /* number of mallocs during MatSetValues() */ 634b0a32e0cSBarry Smith PetscLogDouble fill_ratio_given,fill_ratio_needed; /* fill ratio for LU/ILU */ 635b0a32e0cSBarry Smith PetscLogDouble factor_mallocs; /* number of mallocs during factorization */ 6364e220ebcSLois Curfman McInnes } MatInfo; 6374e220ebcSLois Curfman McInnes 638d9274352SBarry Smith /*E 639d9274352SBarry Smith MatInfoType - Indicates if you want information about the local part of the matrix, 640d9274352SBarry Smith the entire parallel matrix or the maximum over all the local parts. 641d9274352SBarry Smith 642d9274352SBarry Smith Level: beginner 643d9274352SBarry Smith 644af0996ceSBarry Smith Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 645d9274352SBarry Smith 646db781477SPatrick Sanan .seealso: `MatGetInfo()`, `MatInfo` 647d9274352SBarry Smith E*/ 6487b80b807SBarry Smith typedef enum {MAT_LOCAL=1,MAT_GLOBAL_MAX=2,MAT_GLOBAL_SUM=3} MatInfoType; 649014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat,MatInfoType,MatInfo*); 650014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat,Vec); 651014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat,Vec,PetscInt[]); 652014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat,Vec,PetscInt[]); 653014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat,Vec,PetscInt[]); 654014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat,Vec,PetscInt[]); 655014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat,Vec); 656014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat,MatReuse,Mat*); 657014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat,MatReuse,Mat*); 658014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat,IS,IS,Mat*); 659014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat,Vec,Vec); 660014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat,Vec,InsertMode); 661a52676ecSHong Zhang 662014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat,Mat,PetscBool*); 663014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat,Mat,PetscInt,PetscBool*); 664014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat,Mat,PetscInt,PetscBool*); 665014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat,Mat,PetscInt,PetscBool*); 666014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat,Mat,PetscInt,PetscBool*); 667e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat,Mat,PetscInt,PetscBool*); 668e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat,Mat,PetscInt,PetscBool*); 669a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat,Mat,Mat,PetscInt,PetscBool*); 670a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat,Mat,Mat,PetscInt,PetscBool*); 671cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat,Mat,Mat,PetscInt,PetscBool*); 6724222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat,Mat,Mat,PetscInt,PetscBool*); 673447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat,Mat,Mat,PetscInt,PetscBool*); 67486919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat,PetscInt,PetscBool*); 6757b80b807SBarry Smith 676014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat,NormType,PetscReal*); 677014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat,NormType,PetscReal*); 678857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat,PetscScalar*); 679857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat,PetscReal*); 680857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat,PetscReal*); 681857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat,PetscScalar*); 682857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat,PetscReal*); 683857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat,PetscReal*); 684857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat,PetscInt,PetscReal*); 685014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat); 6861b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat); 687014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat,PetscInt,const PetscInt [],PetscScalar,Vec,Vec); 688014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat,IS,PetscScalar,Vec,Vec); 689014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat,PetscInt,const MatStencil [],PetscScalar,Vec,Vec); 690014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat,PetscInt,const MatStencil[],PetscScalar,Vec,Vec); 691014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat,PetscInt,const PetscInt [],PetscScalar,Vec,Vec); 692014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat,IS,PetscScalar,Vec,Vec); 6937b80b807SBarry Smith 694014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat,PetscInt*,PetscInt*); 695014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat,PetscInt*,PetscInt*); 696014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat,PetscInt*,PetscInt*); 697014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat,const PetscInt**); 698014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat,PetscInt*,PetscInt*); 699014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat,const PetscInt**); 700566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat,IS*,IS*); 7015ef9f2a5SBarry Smith 7027dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 7039fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatrices() (since version 3.8)") static inline PetscErrorCode MatGetSubMatrices(Mat mat,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *submat[]) {return MatCreateSubMatrices(mat,n,irow,icol,scall,submat);} 7047dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 7059fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatricesMPI() (since version 3.8)") static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *submat[]) {return MatCreateSubMatricesMPI(mat,n,irow,icol,scall,submat);} 706014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt,Mat *[]); 707df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt,Mat *[]); 7087dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat,IS,IS,MatReuse,Mat *); 7099fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatrix() (since version 3.8)") static inline PetscErrorCode MatGetSubMatrix(Mat mat,IS isrow,IS iscol,MatReuse cll,Mat *newmat) {return MatCreateSubMatrix(mat,isrow,iscol,cll,newmat);} 710014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat,IS,IS,Mat*); 711014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat,IS,IS,Mat*); 712014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat,Mat*); 713014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat*); 7147b80b807SBarry Smith 715014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm,Mat,PetscInt,PetscInt,MatReuse,Mat*); 716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm,Mat,PetscInt,PetscInt,Mat*); 717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat,Mat); 718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat,MatReuse,Mat*); 7198a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat,Mat*); 720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat,MatReuse,IS*,IS*,Mat*); 721ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat,MatReuse,IS*,Mat*); 722014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat,Mat,MatReuse,IS*,IS*,Mat*); 723014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *,const PetscInt *[]); 7248efafbd8SBarry Smith 725014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat,PetscInt,IS[],PetscInt); 726aa1e27eaSFande Kong PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat,PetscInt n,IS is[],PetscInt ov); 727d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat,PetscBool); 7287b80b807SBarry Smith 729014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat,Mat,MatReuse,PetscReal,Mat*); 73022440eb1SKris Buschelman 7317bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat,Mat,Mat,MatReuse,PetscReal,Mat*); 7322df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat,Mat,Mat,MatReuse,PetscReal,Mat*); 7337bab7c10SHong Zhang 734014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat,Mat,MatReuse,PetscReal,Mat*); 735014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat,Mat,MatReuse,PetscReal,Mat*); 73622440eb1SKris Buschelman 737014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat,Mat,MatReuse,PetscReal,Mat*); 738014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat,Mat,MatReuse,PetscReal,Mat*); 739bc011b1eSHong Zhang 740014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat,PetscScalar,Mat,MatStructure); 741014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat,PetscScalar,Mat,MatStructure); 7421c741599SHong Zhang 743014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat,PetscScalar); 744014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat,PetscScalar); 7457b80b807SBarry Smith 746014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat,ISLocalToGlobalMapping,ISLocalToGlobalMapping); 747014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat,ISLocalToGlobalMapping*,ISLocalToGlobalMapping*); 748a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat,PetscLayout*,PetscLayout*); 74981fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat,PetscLayout,PetscLayout); 750014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat,PetscInt,const PetscInt [],PetscScalar,Vec,Vec); 751014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat,IS,PetscScalar,Vec,Vec); 752014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat,PetscInt,const PetscInt [],PetscScalar,Vec,Vec); 753014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat,IS,PetscScalar,Vec,Vec); 754e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar[]); 755014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 756014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 757052efed2SBarry Smith 758014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat,PetscInt,PetscInt); 759014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat,PetscInt*,PetscInt*,PetscInt*,PetscInt*); 76090f02eecSBarry Smith 761014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat,Vec,Vec); 762014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat,Vec,Vec,Vec); 763014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat,Vec,Vec); 76430b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat,Mat,Mat*); 76530b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat,Mat,Mat,Mat*); 76630b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat,Mat,Mat*); 7672a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat,Vec*,Vec*); 7689fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateVecs() (since version 3.6)") static inline PetscErrorCode MatGetVecs(Mat mat,Vec *x,Vec *y) {return MatCreateVecs(mat,x,y);} 76953cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat,PetscInt,MPI_Comm,MatReuse,Mat*); 770014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat,MPI_Comm,MatReuse,Mat*); 771014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat,IS*); 7723a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat,IS*); 7739c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm,Mat,PetscInt,MatReuse,Mat*); 774bd481603SBarry Smith 775bd481603SBarry Smith /*MC 7761620fd73SBarry Smith MatSetValue - Set a single entry into a matrix. 7771620fd73SBarry Smith 7781620fd73SBarry Smith Not collective 7791620fd73SBarry Smith 780a9834a7dSSatish Balay Synopsis: 781a9834a7dSSatish Balay #include <petscmat.h> 782a9834a7dSSatish Balay PetscErrorCode MatSetValue(Mat m,PetscInt row,PetscInt col,PetscScalar value,InsertMode mode) 783a9834a7dSSatish Balay 7841620fd73SBarry Smith Input Parameters: 7851620fd73SBarry Smith + m - the matrix 7861620fd73SBarry Smith . row - the row location of the entry 7871620fd73SBarry Smith . col - the column location of the entry 7881620fd73SBarry Smith . value - the value to insert 7891620fd73SBarry Smith - mode - either INSERT_VALUES or ADD_VALUES 7901620fd73SBarry Smith 7911620fd73SBarry Smith Notes: 792e5e5a7b5SPatrick Sanan For efficiency one should use MatSetValues() and set several values simultaneously. 7931620fd73SBarry Smith 7941620fd73SBarry Smith Level: beginner 7951620fd73SBarry Smith 796db781477SPatrick Sanan .seealso: `MatGetValue()`, `MatSetValues()`, `MatSetValueLocal()`, `MatSetValuesLocal()` 7971620fd73SBarry Smith M*/ 7989fbee547SJacob Faibussowitsch static inline PetscErrorCode MatSetValue(Mat v,PetscInt i,PetscInt j,PetscScalar va,InsertMode mode) {return MatSetValues(v,1,&i,1,&j,&va,mode);} 7991620fd73SBarry Smith 800e5e5a7b5SPatrick Sanan /*@C 801e5e5a7b5SPatrick Sanan MatGetValue - Gets a single value from a matrix 8021620fd73SBarry Smith 803e5e5a7b5SPatrick Sanan Not Collective; can only return a value owned by the given process 804e5e5a7b5SPatrick Sanan 805e5e5a7b5SPatrick Sanan Input Parameters: 806e5e5a7b5SPatrick Sanan + mat - the matrix 807e5e5a7b5SPatrick Sanan . row - the row location of the entry 808e5e5a7b5SPatrick Sanan - col - the column location of the entry 809e5e5a7b5SPatrick Sanan 810e5e5a7b5SPatrick Sanan Output Parameter: 811e5e5a7b5SPatrick Sanan . va - the value 812e5e5a7b5SPatrick Sanan 813e5e5a7b5SPatrick Sanan Notes: 814e5e5a7b5SPatrick Sanan For efficiency one should use MatGetValues() and get several values simultaneously. 815e5e5a7b5SPatrick Sanan 816e5e5a7b5SPatrick Sanan See notes for MatGetValues(). 817e5e5a7b5SPatrick Sanan 818e5e5a7b5SPatrick Sanan Level: advanced 819e5e5a7b5SPatrick Sanan 820db781477SPatrick Sanan .seealso: `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()` 821e5e5a7b5SPatrick Sanan @*/ 8229fbee547SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat,PetscInt row,PetscInt col,PetscScalar *va) {return MatGetValues(mat,1,&row,1,&col,va);} 823e5e5a7b5SPatrick Sanan 824e5e5a7b5SPatrick Sanan /*MC 825e5e5a7b5SPatrick Sanan MatSetValueLocal - Inserts or adds a single value into a matrix, 826e5e5a7b5SPatrick Sanan using a local numbering of the nodes. 827e5e5a7b5SPatrick Sanan 828e5e5a7b5SPatrick Sanan Not Collective 829e5e5a7b5SPatrick Sanan 830e5e5a7b5SPatrick Sanan Input Parameters: 831e5e5a7b5SPatrick Sanan + m - the matrix 832e5e5a7b5SPatrick Sanan . row - the row location of the entry 833e5e5a7b5SPatrick Sanan . col - the column location of the entry 834e5e5a7b5SPatrick Sanan . value - the value to insert 835e5e5a7b5SPatrick Sanan - mode - either INSERT_VALUES or ADD_VALUES 836e5e5a7b5SPatrick Sanan 837e5e5a7b5SPatrick Sanan Notes: 838e5e5a7b5SPatrick Sanan For efficiency one should use MatSetValuesLocal() and set several values simultaneously. 839e5e5a7b5SPatrick Sanan 840e5e5a7b5SPatrick Sanan See notes for MatSetValuesLocal() for additional information on when and how this function can be used. 841e5e5a7b5SPatrick Sanan 842e5e5a7b5SPatrick Sanan Level: intermediate 843e5e5a7b5SPatrick Sanan 844db781477SPatrick Sanan .seealso: `MatSetValue()`, `MatSetValuesLocal()` 845e5e5a7b5SPatrick Sanan M*/ 8469fbee547SJacob Faibussowitsch static inline PetscErrorCode MatSetValueLocal(Mat v,PetscInt i,PetscInt j,PetscScalar va,InsertMode mode) {return MatSetValuesLocal(v,1,&i,1,&j,&va,mode);} 8471620fd73SBarry Smith 8481620fd73SBarry Smith /*MC 849d0609cedSBarry Smith MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per 850bd481603SBarry Smith row in a matrix providing the data that one can use to correctly preallocate the matrix. 851bd481603SBarry Smith 852bd481603SBarry Smith Synopsis: 853aaa7dc30SBarry Smith #include <petscmat.h> 854d0609cedSBarry Smith PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz) 855bd481603SBarry Smith 856d083f849SBarry Smith Collective 857bd481603SBarry Smith 858bd481603SBarry Smith Input Parameters: 859bd481603SBarry Smith + comm - the communicator that will share the eventually allocated matrix 860859fcb39SBarry Smith . nrows - the number of LOCAL rows in the matrix 861859fcb39SBarry Smith - ncols - the number of LOCAL columns in the matrix 862bd481603SBarry Smith 863bd481603SBarry Smith Output Parameters: 864bd481603SBarry Smith + dnz - the array that will be passed to the matrix preallocation routines 865a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 866bd481603SBarry Smith 867bd481603SBarry Smith Level: intermediate 868bd481603SBarry Smith 869bd481603SBarry Smith Notes: 870d0609cedSBarry Smith This is a macro that handles its own error checking, it does not return an error code. 871d0609cedSBarry Smith 872a7f22e61SSatish Balay See Users-Manual: ch_performance for more details. 873bd481603SBarry Smith 8741d73ed98SBarry Smith Do not malloc or free dnz and onz, that is handled internally by these routines 875bd481603SBarry Smith 876d0609cedSBarry Smith Developer Notes: 8771620fd73SBarry Smith This is a MACRO not a function because it has a leading { that is closed by PetscPreallocateFinalize(). 8781620fd73SBarry Smith 879db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 880db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 881bd481603SBarry Smith M*/ 882d0609cedSBarry Smith #define MatPreallocateBegin(comm,nrows,ncols,dnz,onz) do { \ 8835f80ce2aSJacob Faibussowitsch PetscInt __nrows = (nrows),__ncols = (ncols),__rstart,__start,__end = 0; \ 8849566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(__nrows,&(dnz),__nrows,&(onz))); \ 8859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&__ncols,&__end,1,MPIU_INT,MPI_SUM,comm)); \ 8865f80ce2aSJacob Faibussowitsch __start = __end - __ncols; (void)__start; \ 8879566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&__nrows,&__rstart,1,MPIU_INT,MPI_SUM,comm)); \ 8885f80ce2aSJacob Faibussowitsch __rstart -= __nrows 8897c922b88SBarry Smith 890d0609cedSBarry Smith #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO("GCC warning \"Use MatPreallocateBegin() (since version 3.18)\"") MatPreallocateBegin(__VA_ARGS__) 891d0609cedSBarry Smith 892bd481603SBarry Smith /*MC 893bd481603SBarry Smith MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be 894bd481603SBarry Smith inserted using a local number of the rows and columns 895bd481603SBarry Smith 896bd481603SBarry Smith Synopsis: 897aaa7dc30SBarry Smith #include <petscmat.h> 898c1ac3661SBarry Smith PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 899bd481603SBarry Smith 900bd481603SBarry Smith Not Collective 901bd481603SBarry Smith 902bd481603SBarry Smith Input Parameters: 903784ac674SJed Brown + map - the row mapping from local numbering to global numbering 904bd481603SBarry Smith . nrows - the number of rows indicated 9051d73ed98SBarry Smith . rows - the indices of the rows 906784ac674SJed Brown . cmap - the column mapping from local to global numbering 907bd481603SBarry Smith . ncols - the number of columns in the matrix 908bd481603SBarry Smith . cols - the columns indicated 909bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 910a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 911bd481603SBarry Smith 912bd481603SBarry Smith Level: intermediate 913bd481603SBarry Smith 914bd481603SBarry Smith Notes: 915a7f22e61SSatish Balay See Users-Manual: ch_performance for more details. 916bd481603SBarry Smith 9171d73ed98SBarry Smith Do not malloc or free dnz and onz, that is handled internally by these routines 918bd481603SBarry Smith 919db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 920db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()` 921bd481603SBarry Smith M*/ 92294bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap,nrows,rows,cmap,ncols,cols,dnz,onz) \ 92394bad497SJacob Faibussowitsch PetscMacroReturnStandard( \ 9249566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(rmap,nrows,rows,rows)); \ 9259566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(cmap,ncols,cols,cols)); \ 9269566063dSJacob Faibussowitsch for (PetscInt __l=0;__l<nrows;__l++) PetscCall(MatPreallocateSet((rows)[__l],ncols,cols,dnz,onz)); \ 92794bad497SJacob Faibussowitsch ) 928c4f061fbSSatish Balay 929bd481603SBarry Smith /*MC 930c1154cd5SBarry Smith MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be 931c1154cd5SBarry Smith inserted using a local number of the rows and columns. This version removes any duplicate columns in cols 932c1154cd5SBarry Smith 933c1154cd5SBarry Smith Synopsis: 934c1154cd5SBarry Smith #include <petscmat.h> 935c1154cd5SBarry Smith PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 936c1154cd5SBarry Smith 937c1154cd5SBarry Smith Not Collective 938c1154cd5SBarry Smith 939c1154cd5SBarry Smith Input Parameters: 940c1154cd5SBarry Smith + map - the row mapping from local numbering to global numbering 941c1154cd5SBarry Smith . nrows - the number of rows indicated 942c1154cd5SBarry Smith . rows - the indices of the rows (these values are mapped to the global values) 943c1154cd5SBarry Smith . cmap - the column mapping from local to global numbering 944c1154cd5SBarry Smith . ncols - the number of columns in the matrix (this value will be changed if duplicate columns are found) 945c1154cd5SBarry Smith . cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed) 946c1154cd5SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 947a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 948c1154cd5SBarry Smith 949c1154cd5SBarry Smith Level: intermediate 950c1154cd5SBarry Smith 951c1154cd5SBarry Smith Notes: 952c1154cd5SBarry Smith See Users-Manual: ch_performance for more details. 953c1154cd5SBarry Smith 954c1154cd5SBarry Smith Do not malloc or free dnz and onz, that is handled internally by these routines 955c1154cd5SBarry Smith 956db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 957db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 958c1154cd5SBarry Smith M*/ 95994bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap,nrows,rows,cmap,ncols,cols,dnz,onz) \ 96094bad497SJacob Faibussowitsch PetscMacroReturnStandard( \ 9619566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(rmap,nrows,rows,rows)); \ 9629566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(cmap,ncols,cols,cols)); \ 9639566063dSJacob Faibussowitsch PetscCall(PetscSortRemoveDupsInt(&ncols,cols)); \ 9649566063dSJacob Faibussowitsch for (PetscInt __l=0;__l<nrows;__l++) PetscCall(MatPreallocateSet((rows)[__l],ncols,cols,dnz,onz)); \ 96594bad497SJacob Faibussowitsch ) 966c1154cd5SBarry Smith 967c1154cd5SBarry Smith /*MC 968d6e23781SBarry Smith MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 969bd481603SBarry Smith inserted using a local number of the rows and columns 970bd481603SBarry Smith 971bd481603SBarry Smith Synopsis: 972aaa7dc30SBarry Smith #include <petscmat.h> 973d6e23781SBarry Smith PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 974d6e23781SBarry Smith 975d6e23781SBarry Smith Not Collective 976d6e23781SBarry Smith 977d6e23781SBarry Smith Input Parameters: 978d6e23781SBarry Smith + map - the row mapping from local numbering to global numbering 979d6e23781SBarry Smith . nrows - the number of rows indicated 980d6e23781SBarry Smith . rows - the indices of the rows 981d6e23781SBarry Smith . cmap - the column mapping from local to global numbering 982d6e23781SBarry Smith . ncols - the number of columns in the matrix 983d6e23781SBarry Smith . cols - the columns indicated 984d6e23781SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 985a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 986d6e23781SBarry Smith 987d6e23781SBarry Smith Level: intermediate 988d6e23781SBarry Smith 989d6e23781SBarry Smith Notes: 990d6e23781SBarry Smith See Users-Manual: ch_performance for more details. 991d6e23781SBarry Smith 992d6e23781SBarry Smith Do not malloc or free dnz and onz, that is handled internally by these routines 993d6e23781SBarry Smith 994db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 995db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()` 996d6e23781SBarry Smith M*/ 99794bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap,nrows,rows,cmap,ncols,cols,dnz,onz) \ 99894bad497SJacob Faibussowitsch PetscMacroReturnStandard( \ 9999566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApplyBlock(rmap,nrows,rows,rows)); \ 10009566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApplyBlock(cmap,ncols,cols,cols)); \ 10019566063dSJacob Faibussowitsch for (PetscInt __l=0;__l<nrows;__l++) PetscCall(MatPreallocateSet((rows)[__l],ncols,cols,dnz,onz)); \ 100294bad497SJacob Faibussowitsch ) 1003d6e23781SBarry Smith 1004d6e23781SBarry Smith /*MC 1005d6e23781SBarry Smith MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1006d6e23781SBarry Smith inserted using a local number of the rows and columns 1007d6e23781SBarry Smith 1008d6e23781SBarry Smith Synopsis: 1009d6e23781SBarry Smith #include <petscmat.h> 1010d6e23781SBarry Smith PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1011bd481603SBarry Smith 1012bd481603SBarry Smith Not Collective 1013bd481603SBarry Smith 1014bd481603SBarry Smith Input Parameters: 1015bd481603SBarry Smith + map - the mapping between local numbering and global numbering 1016bd481603SBarry Smith . nrows - the number of rows indicated 10171d73ed98SBarry Smith . rows - the indices of the rows 1018bd481603SBarry Smith . ncols - the number of columns in the matrix 1019bd481603SBarry Smith . cols - the columns indicated 1020bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1021a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1022bd481603SBarry Smith 1023bd481603SBarry Smith Level: intermediate 1024bd481603SBarry Smith 1025bd481603SBarry Smith Notes: 1026a7f22e61SSatish Balay See Users-Manual: ch_performance for more details. 1027bd481603SBarry Smith 1028bd481603SBarry Smith Do not malloc or free dnz and onz that is handled internally by these routines 1029bd481603SBarry Smith 1030db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()` 1031db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1032bd481603SBarry Smith M*/ 103394bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map,nrows,rows,ncols,cols,dnz,onz) \ 103494bad497SJacob Faibussowitsch PetscMacroReturnStandard( \ 10359566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApplyBlock(map,nrows,rows,rows)); \ 10369566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApplyBlock(map,ncols,cols,cols)); \ 10379566063dSJacob Faibussowitsch for (PetscInt __l=0;__l<nrows;__l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l],ncols,cols,dnz,onz)); \ 103894bad497SJacob Faibussowitsch ) 1039e83a5d19SLisandro Dalcin 1040bd481603SBarry Smith /*MC 1041bd481603SBarry Smith MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1042bd481603SBarry Smith inserted using a local number of the rows and columns 1043bd481603SBarry Smith 1044bd481603SBarry Smith Synopsis: 1045aaa7dc30SBarry Smith #include <petscmat.h> 1046c1ac3661SBarry Smith PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1047bd481603SBarry Smith 1048bd481603SBarry Smith Not Collective 1049bd481603SBarry Smith 1050bd481603SBarry Smith Input Parameters: 105164075487SBarry Smith + row - the row 1052bd481603SBarry Smith . ncols - the number of columns in the matrix 1053a50f8bf6SHong Zhang - cols - the columns indicated 1054a50f8bf6SHong Zhang 1055a50f8bf6SHong Zhang Output Parameters: 1056a50f8bf6SHong Zhang + dnz - the array that will be passed to the matrix preallocation routines 1057a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1058bd481603SBarry Smith 1059bd481603SBarry Smith Level: intermediate 1060bd481603SBarry Smith 1061bd481603SBarry Smith Notes: 1062a7f22e61SSatish Balay See Users-Manual: ch_performance for more details. 1063bd481603SBarry Smith 1064bd481603SBarry Smith Do not malloc or free dnz and onz that is handled internally by these routines 1065bd481603SBarry Smith 1066d0609cedSBarry Smith This is a MACRO not a function because it uses variables declared in MatPreallocateBegin(). 10671620fd73SBarry Smith 1068db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1069db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1070bd481603SBarry Smith M*/ 107194bad497SJacob Faibussowitsch #define MatPreallocateSet(row,nc,cols,dnz,onz) PetscMacroReturnStandard( \ 10722c71b3e2SJacob Faibussowitsch PetscCheck(row >= __rstart,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT,row,__rstart); \ 10732c71b3e2SJacob Faibussowitsch PetscCheck(row < __rstart+__nrows,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT,row,__rstart+__nrows-1); \ 10745f80ce2aSJacob Faibussowitsch for (PetscInt __i = 0; __i < nc; ++__i) { \ 107564075487SBarry Smith if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \ 1076a6042fd4SStefano Zampini else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 10777c922b88SBarry Smith } \ 107894bad497SJacob Faibussowitsch ) 10797c922b88SBarry Smith 1080bd481603SBarry Smith /*MC 1081d6e23781SBarry Smith MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1082bd481603SBarry Smith inserted using a local number of the rows and columns 1083bd481603SBarry Smith 1084bd481603SBarry Smith Synopsis: 1085aaa7dc30SBarry Smith #include <petscmat.h> 1086d6e23781SBarry Smith PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1087bd481603SBarry Smith 1088bd481603SBarry Smith Not Collective 1089bd481603SBarry Smith 1090bd481603SBarry Smith Input Parameters: 1091bd481603SBarry Smith + nrows - the number of rows indicated 10921d73ed98SBarry Smith . rows - the indices of the rows 1093bd481603SBarry Smith . ncols - the number of columns in the matrix 1094bd481603SBarry Smith . cols - the columns indicated 1095bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1096a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1097bd481603SBarry Smith 1098bd481603SBarry Smith Level: intermediate 1099bd481603SBarry Smith 1100bd481603SBarry Smith Notes: 1101a7f22e61SSatish Balay See Users-Manual: ch_performance for more details. 1102bd481603SBarry Smith 1103bd481603SBarry Smith Do not malloc or free dnz and onz that is handled internally by these routines 1104bd481603SBarry Smith 1105d0609cedSBarry Smith This is a MACRO not a function because it uses variables declared in MatPreallocateBegin(). 11061620fd73SBarry Smith 1107db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`, 1108db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1109bd481603SBarry Smith M*/ 111094bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row,nc,cols,dnz,onz) \ 111194bad497SJacob Faibussowitsch PetscMacroReturnStandard( \ 11125f80ce2aSJacob Faibussowitsch for (PetscInt __i=0; __i<nc; __i++) { \ 1113d3d32019SBarry Smith if (cols[__i] >= __end) onz[row - __rstart]++; \ 1114a6042fd4SStefano Zampini else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 1115d3d32019SBarry Smith } \ 111694bad497SJacob Faibussowitsch ) 1117d3d32019SBarry Smith 1118bd481603SBarry Smith /*MC 1119a6042fd4SStefano Zampini MatPreallocateLocation - An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists 112016371a99SBarry Smith 112116371a99SBarry Smith Synopsis: 1122aaa7dc30SBarry Smith #include <petscmat.h> 112316371a99SBarry Smith PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz) 112416371a99SBarry Smith 112516371a99SBarry Smith Not Collective 112616371a99SBarry Smith 112716371a99SBarry Smith Input Parameters: 1128a2b725a8SWilliam Gropp + A - matrix 112916371a99SBarry Smith . row - row where values exist (must be local to this process) 113016371a99SBarry Smith . ncols - number of columns 113116371a99SBarry Smith . cols - columns with nonzeros 113216371a99SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1133a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 113416371a99SBarry Smith 113516371a99SBarry Smith Level: intermediate 113616371a99SBarry Smith 113716371a99SBarry Smith Notes: 1138a7f22e61SSatish Balay See Users-Manual: ch_performance for more details. 113916371a99SBarry Smith 114016371a99SBarry Smith Do not malloc or free dnz and onz that is handled internally by these routines 114116371a99SBarry Smith 114216371a99SBarry Smith This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines. 114316371a99SBarry Smith 1144db781477SPatrick Sanan .seealso: `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1145db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 114616371a99SBarry Smith M*/ 1147d0609cedSBarry Smith #define MatPreallocateLocation(A,row,ncols,cols,dnz,onz) (A ? MatSetValues(A,1,&row,ncols,cols,NULL,INSERT_VALUES) : MatPreallocateSet(row,ncols,cols,dnz,onz)) 114816371a99SBarry Smith 114916371a99SBarry Smith /*MC 1150d0609cedSBarry Smith MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per 1151bd481603SBarry Smith row in a matrix providing the data that one can use to correctly preallocate the matrix. 1152bd481603SBarry Smith 1153bd481603SBarry Smith Synopsis: 1154aaa7dc30SBarry Smith #include <petscmat.h> 1155d0609cedSBarry Smith PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz) 1156bd481603SBarry Smith 1157d083f849SBarry Smith Collective 1158bd481603SBarry Smith 1159bd481603SBarry Smith Input Parameters: 116016371a99SBarry Smith + dnz - the array that was be passed to the matrix preallocation routines 1161a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1162bd481603SBarry Smith 1163bd481603SBarry Smith Level: intermediate 1164bd481603SBarry Smith 1165bd481603SBarry Smith Notes: 1166d0609cedSBarry Smith This is a macro that handles its own error checking, it does not return an error code. 1167d0609cedSBarry Smith 1168a7f22e61SSatish Balay See Users-Manual: ch_performance for more details. 1169bd481603SBarry Smith 1170d0609cedSBarry Smith Do not malloc or free dnz and onz, that is handled internally by these routines 1171bd481603SBarry Smith 1172d0609cedSBarry Smith Developer Notes: 1173d0609cedSBarry Smith This is a MACRO not a function because it closes the { started in MatPreallocateBegin(). 11741620fd73SBarry Smith 1175db781477SPatrick Sanan .seealso: `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1176db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 1177bd481603SBarry Smith M*/ 1178d0609cedSBarry Smith #define MatPreallocateEnd(dnz,onz) PetscCall(PetscFree2(dnz,onz));} while (0) 1179d0609cedSBarry Smith 1180d0609cedSBarry Smith #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO("GCC warning \"Use MatPreallocateEnd() (since version 3.18)\"") MatPreallocateEnd(__VA_ARGS__) 11817c922b88SBarry Smith 11827b80b807SBarry Smith /* Routines unique to particular data structures */ 1183014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat,void *); 1184698d4c6aSKris Buschelman 1185014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat,IS*,IS*); 1186014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat,PetscInt *,PetscInt *[],PetscInt *); 1187698d4c6aSKris Buschelman 1188014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat,PetscInt[]); 1189014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat,PetscInt[]); 1190014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*); 1191014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*); 1192014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*); 1193014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*,PetscInt,PetscBool); 11947b80b807SBarry Smith 1195a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4 1196a96a251dSBarry Smith 1197014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[]); 1198014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[]); 1199014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat,PetscInt,const PetscInt[]); 120019b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat,PetscInt); 1201273d9f13SBarry Smith 1202014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1203014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1204014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1205014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat,const PetscInt [],const PetscInt [],const PetscScalar []); 1206014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 1207014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat,const PetscInt[],const PetscInt[],const PetscScalar[]); 1208014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 1209014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat,PetscInt[],PetscInt[],PetscInt[]); 1210b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat,Mat*); 1211014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat,PetscScalar[]); 1212014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat,PetscScalar[]); 12139230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat,Mat*,Mat*,const PetscInt*[]); 12149230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat,Mat*,Mat*,const PetscInt*[]); 1215014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat,Mat*); 1216273d9f13SBarry Smith 121749a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat,PetscInt*); 1218ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat,PetscInt); 12199fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatDenseSetLDA() (since version 3.14)") static inline PetscErrorCode MatSeqDenseSetLDA(Mat A,PetscInt lda) {return MatDenseSetLDA(A,lda);} 1220014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat,Mat*); 12211b807ce4Svictorle 1222621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[]); 1223621e819fSSatish Balay 1224014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat); 1225014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat); 12262e8a6d31SBarry Smith 1227014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat,IS*); 12287cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat,IS*); 12297b80b807SBarry Smith /* 12307b80b807SBarry Smith These routines are not usually accessed directly, rather solving is 123194b7f48cSBarry Smith done through the KSP and PC interfaces. 12327b80b807SBarry Smith */ 12337b80b807SBarry Smith 123476bdecfbSBarry Smith /*J 12358f6c3df8SBarry Smith MatOrderingType - String with the name of a PETSc matrix ordering 1236d9274352SBarry Smith 1237d9274352SBarry Smith Level: beginner 1238d9274352SBarry Smith 12392c7c0729SBarry Smith Notes: 12402c7c0729SBarry Smith If MATORDERINGEXTERNAL is used then PETSc does not compute an ordering and utilizes one built into the factorization package 12412c7c0729SBarry Smith 1242db781477SPatrick Sanan .seealso: `MatGetOrdering()` 124376bdecfbSBarry Smith J*/ 124419fd82e9SBarry Smith typedef const char* MatOrderingType; 12452692d6eeSBarry Smith #define MATORDERINGNATURAL "natural" 12462692d6eeSBarry Smith #define MATORDERINGND "nd" 12472692d6eeSBarry Smith #define MATORDERING1WD "1wd" 12482692d6eeSBarry Smith #define MATORDERINGRCM "rcm" 12492692d6eeSBarry Smith #define MATORDERINGQMD "qmd" 12502692d6eeSBarry Smith #define MATORDERINGROWLENGTH "rowlength" 1251510184a7SJed Brown #define MATORDERINGWBM "wbm" 1252fc1bef75SJed Brown #define MATORDERINGSPECTRAL "spectral" 1253312e372aSBarry Smith #define MATORDERINGAMD "amd" /* only works if UMFPACK is installed with PETSc */ 1254048412efSPablo Brubeck #define MATORDERINGMETISND "metisnd" /* only works if METIS is installed with PETSc */ 12559bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */ 12562c7c0729SBarry Smith #define MATORDERINGEXTERNAL "external" /* uses an ordering type internal to the factorization package */ 1257b12f92e5SBarry Smith 125819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrdering(Mat,MatOrderingType,IS*,IS*); 1259140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrderingList(PetscFunctionList*); 1260bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatOrderingRegister(const char[],PetscErrorCode(*)(Mat,MatOrderingType,IS*,IS*)); 1261140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList; 1262d4fbbf0eSBarry Smith 1263014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat,PetscReal,IS,IS); 1264fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat,PetscReal,PetscBool,Mat*); 1265a2ce50c7SBarry Smith 12664ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat,MatFactorType,MatOrderingType*); 12674ac6704cSBarry Smith 1268d91e6319SBarry Smith /*S 1269ec5066bdSBarry Smith MatFactorShiftType - Numeric Shift for factorizations 1270d90ac83dSHong Zhang 1271d90ac83dSHong Zhang Level: beginner 1272d90ac83dSHong Zhang 1273db781477SPatrick Sanan .seealso: `MatGetFactor()` 1274d90ac83dSHong Zhang S*/ 1275d90ac83dSHong Zhang typedef enum {MAT_SHIFT_NONE,MAT_SHIFT_NONZERO,MAT_SHIFT_POSITIVE_DEFINITE,MAT_SHIFT_INBLOCKS} MatFactorShiftType; 12766a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[]; 12775e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[]; 1278d90ac83dSHong Zhang 1279d90ac83dSHong Zhang /*S 1280ec5066bdSBarry Smith MatFactorError - indicates what type of error was generated in a matrix factorization 12819aa7eafdSHong Zhang 12829aa7eafdSHong Zhang Level: beginner 12839aa7eafdSHong Zhang 128495452b02SPatrick Sanan Developer Notes: 128595452b02SPatrick Sanan Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 128600e125f8SBarry Smith 1287db781477SPatrick Sanan .seealso: `MatGetFactor()` 12889aa7eafdSHong Zhang S*/ 12895cd7cf9dSHong Zhang typedef enum {MAT_FACTOR_NOERROR,MAT_FACTOR_STRUCT_ZEROPIVOT,MAT_FACTOR_NUMERIC_ZEROPIVOT,MAT_FACTOR_OUTMEMORY,MAT_FACTOR_OTHER} MatFactorError; 12909aa7eafdSHong Zhang 129100e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat,MatFactorError*); 1292b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat); 12937b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat,PetscReal*,PetscInt*); 129400e125f8SBarry Smith 12959aa7eafdSHong Zhang /*S 1296422a814eSBarry Smith MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization 1297b00f7748SHong Zhang 129861cad860SBarry Smith In Fortran these are simply double precision arrays of size MAT_FACTORINFO_SIZE, that is use 129961cad860SBarry Smith $ MatFactorInfo info(MAT_FACTORINFO_SIZE) 1300b00f7748SHong Zhang 130195452b02SPatrick Sanan Notes: 130295452b02SPatrick Sanan These are not usually directly used by users, instead use PC type of LU, ILU, CHOLESKY or ICC. 1303b00f7748SHong Zhang 130461cad860SBarry Smith You can use MatFactorInfoInitialize() to set default values. 130561cad860SBarry Smith 1306b00f7748SHong Zhang Level: developer 1307b00f7748SHong Zhang 1308db781477SPatrick Sanan .seealso: `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, `MatICCFactorSymbolic()`, `MatICCFactor()`, 1309db781477SPatrick Sanan `MatFactorInfoInitialize()` 1310b00f7748SHong Zhang 1311b00f7748SHong Zhang S*/ 1312b00f7748SHong Zhang typedef struct { 131315e8a5b3SHong Zhang PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */ 131485317021SBarry Smith PetscReal usedt; 131515e8a5b3SHong Zhang PetscReal dt; /* drop tolerance */ 1316b00f7748SHong Zhang PetscReal dtcol; /* tolerance for pivoting */ 131715e8a5b3SHong Zhang PetscReal dtcount; /* maximum nonzeros to be allowed per row */ 131867e28bfeSBarry Smith PetscReal fill; /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */ 1319348344bbSBarry Smith PetscReal levels; /* ICC/ILU(levels) */ 1320bcd9e38bSBarry Smith PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 1321bcd9e38bSBarry Smith factorization may be faster if do not pivot */ 132215e8a5b3SHong Zhang PetscReal zeropivot; /* pivot is called zero if less than this */ 1323f4db908eSBarry Smith PetscReal shifttype; /* type of shift added to matrix factor to prevent zero pivots */ 1324f4db908eSBarry Smith PetscReal shiftamount; /* how large the shift is */ 132515e8a5b3SHong Zhang } MatFactorInfo; 1326ffa6d0a5SLois Curfman McInnes 1327014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo*); 13289a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat,IS,const MatFactorInfo*); 13299a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat,Mat,IS,const MatFactorInfo*); 13309a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat,Mat,const MatFactorInfo*); 13319a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat,IS,IS,const MatFactorInfo*); 13329a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat,IS,IS,const MatFactorInfo*); 13339a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat,Mat,IS,IS,const MatFactorInfo*); 13349a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat,Mat,IS,IS,const MatFactorInfo*); 13359a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat,Mat,IS,const MatFactorInfo*); 13369a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat,IS,const MatFactorInfo*); 13379a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat,Mat,const MatFactorInfo*); 13383f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat,IS,const MatFactorInfo*); 13393f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat,Mat,IS,const MatFactorInfo*); 13403f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat,Mat,const MatFactorInfo*); 1341014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat,PetscInt*,PetscInt*,PetscInt*); 1342014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat,Vec,Vec); 1343014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat,Vec,Vec); 1344014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat,Vec,Vec); 1345014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat,Vec,Vec,Vec); 1346014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat,Vec,Vec); 1347014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat,Vec,Vec,Vec); 1348014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat,Vecs,Vecs); 13497c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat); 13507c2f51b8SStefano Zampini 13517c2f51b8SStefano Zampini typedef enum {MAT_FACTOR_SCHUR_UNFACTORED, MAT_FACTOR_SCHUR_FACTORED, MAT_FACTOR_SCHUR_INVERTED} MatFactorSchurStatus; 13528e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat,IS); 13537c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat,Mat*,MatFactorSchurStatus*); 13547c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat,Mat*,MatFactorSchurStatus); 13555a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat); 13567c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat,Mat*,MatFactorSchurStatus*); 13575a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat,Vec,Vec); 13585a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat,Vec,Vec); 13596dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat); 1360bb5a7306SBarry Smith 13618a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat); 1362d91e6319SBarry Smith /*E 1363d91e6319SBarry Smith MatSORType - What type of (S)SOR to perform 1364bb1eb677SSatish Balay 1365d91e6319SBarry Smith Level: beginner 1366d91e6319SBarry Smith 1367d9274352SBarry Smith May be bitwise ORd together 1368d9274352SBarry Smith 1369af0996ceSBarry Smith Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 1370d91e6319SBarry Smith 13714e7234bfSBarry Smith MatSORType may be bitwise ORd together, so do not change the numbers 13724e7234bfSBarry Smith 1373db781477SPatrick Sanan .seealso: `MatSOR()` 1374d91e6319SBarry Smith E*/ 1375ee50ffe9SBarry Smith typedef enum {SOR_FORWARD_SWEEP=1,SOR_BACKWARD_SWEEP=2,SOR_SYMMETRIC_SWEEP=3, 1376ee50ffe9SBarry Smith SOR_LOCAL_FORWARD_SWEEP=4,SOR_LOCAL_BACKWARD_SWEEP=8, 1377ee50ffe9SBarry Smith SOR_LOCAL_SYMMETRIC_SWEEP=12,SOR_ZERO_INITIAL_GUESS=16, 137884cb2905SBarry Smith SOR_EISENSTAT=32,SOR_APPLY_UPPER=64,SOR_APPLY_LOWER=128} MatSORType; 1379014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 13808ed539a5SBarry Smith 1381d4fbbf0eSBarry Smith /* 1382639f9d9dSBarry Smith These routines are for efficiently computing Jacobians via finite differences. 1383639f9d9dSBarry Smith */ 1384b12f92e5SBarry Smith 13857086a01eSPeter Brune /*S 13867086a01eSPeter Brune MatColoring - Object for managing the coloring of matrices. 13877086a01eSPeter Brune 13887086a01eSPeter Brune Level: beginner 13897086a01eSPeter Brune 1390ec5066bdSBarry Smith Notes: 1391ec5066bdSBarry Smith Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the MatColoring object or from the mesh from which the 1392ec5066bdSBarry Smith matrix comes from via DMCreateColoring(). In general using the mesh produces a more optimal coloring (fewer colors). 1393ec5066bdSBarry Smith 1394ec5066bdSBarry Smith Once a coloring is available MatFDColoringCreate() creates an object that can be used to efficiently compute Jacobians using that coloring. This 1395ec5066bdSBarry Smith same object can also be used to efficiently convert data created by Automatic Differentation tools to PETSc sparse matrices. 1396ec5066bdSBarry Smith 1397db781477SPatrick Sanan .seealso: `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`, `MatOrdering`, `MatPartitioning`, `MatColoringType` 13987086a01eSPeter Brune S*/ 1399d4db15c4SBarry Smith typedef struct _p_MatColoring* MatColoring; 1400d4db15c4SBarry Smith 1401d4db15c4SBarry Smith /*J 1402d4db15c4SBarry Smith MatColoringType - String with the name of a PETSc matrix coloring 1403d9274352SBarry Smith 1404d9274352SBarry Smith Level: beginner 1405d9274352SBarry Smith 1406db781477SPatrick Sanan .seealso: `MatColoringSetType()`, `MatColoring` 140776bdecfbSBarry Smith J*/ 140819fd82e9SBarry Smith typedef const char* MatColoringType; 14095567d71aSPeter Brune #define MATCOLORINGJP "jp" 1410b9acb617SPeter Brune #define MATCOLORINGPOWER "power" 14112692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural" 14122692d6eeSBarry Smith #define MATCOLORINGSL "sl" 14132692d6eeSBarry Smith #define MATCOLORINGLF "lf" 14142692d6eeSBarry Smith #define MATCOLORINGID "id" 14158121bdceSPeter Brune #define MATCOLORINGGREEDY "greedy" 1416b12f92e5SBarry Smith 14178ac6da0aSPeter Brune /*E 14188ac6da0aSPeter Brune MatColoringWeightType - Type of weight scheme 14198ac6da0aSPeter Brune 14208ac6da0aSPeter Brune Not Collective 14218ac6da0aSPeter Brune 14228ac6da0aSPeter Brune + MAT_COLORING_RANDOM - Random weights 14238ac6da0aSPeter Brune . MAT_COLORING_LEXICAL - Lexical weighting based upon global numbering. 14248ac6da0aSPeter Brune - MAT_COLORING_LF - Last-first weighting. 14258ac6da0aSPeter Brune 14268ac6da0aSPeter Brune Level: intermediate 14278ac6da0aSPeter Brune 1428af0996ceSBarry Smith Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 1429ec5066bdSBarry Smith 1430db781477SPatrick Sanan .seealso: `MatColoring`, `MatColoringCreate()` 14318ac6da0aSPeter Brune E*/ 1432301c140bSPeter Brune typedef enum {MAT_COLORING_WEIGHT_RANDOM,MAT_COLORING_WEIGHT_LEXICAL,MAT_COLORING_WEIGHT_LF,MAT_COLORING_WEIGHT_SL} MatColoringWeightType; 14338ac6da0aSPeter Brune 1434335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat,MatColoring*); 1435d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat,PetscInt,PetscInt*); 1436335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring*); 1437335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring,PetscViewer); 1438335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring,MatColoringType); 1439335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring); 1440335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring,PetscInt); 1441335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring,PetscInt*); 1442335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring,PetscInt); 1443335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring,PetscInt*); 1444335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring,ISColoring*); 1445335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[],PetscErrorCode(*)(MatColoring)); 1446014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat,PetscInt,PetscInt,ISColoringValue[],ISColoring*); 14478ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring,MatColoringWeightType); 1448c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring,PetscReal*,PetscInt*); 14498ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring,PetscReal **,PetscInt **lperm); 1450bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring,ISColoring); 14519fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatColoringTest() (since version 3.10)") static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring,ISColoring iscoloring) {return MatColoringTest(matcoloring,iscoloring);} 1452bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat,ISColoring); 1453639f9d9dSBarry Smith 1454d9274352SBarry Smith /*S 1455d9274352SBarry Smith MatFDColoring - Object for computing a sparse Jacobian via finite differences 1456d9274352SBarry Smith and coloring 1457639f9d9dSBarry Smith 1458d9274352SBarry Smith Level: beginner 1459d9274352SBarry Smith 1460ec5066bdSBarry Smith Notes: 1461ec5066bdSBarry Smith This object is creating utilizing a coloring provided by the MatColoring object or DMCreateColoring() 1462ec5066bdSBarry Smith 1463db781477SPatrick Sanan .seealso: `MatFDColoringCreate()`, `MatColoring`, `DMCreateColoring()` 1464d9274352SBarry Smith S*/ 1465e2a1c21fSSatish Balay typedef struct _p_MatFDColoring* MatFDColoring; 1466639f9d9dSBarry Smith 1467014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat,ISColoring,MatFDColoring *); 1468014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring*); 1469014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring,PetscViewer); 1470014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring,PetscErrorCode (*)(void),void*); 1471014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring,PetscErrorCode (**)(void),void**); 1472014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring,PetscReal,PetscReal); 1473014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring); 1474d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat,MatFDColoring,Vec,void *); 1475014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring,Vec); 1476edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring,PetscInt*,const PetscInt*[]); 1477f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat,ISColoring,MatFDColoring); 1478f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring,PetscInt,PetscInt); 1479bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat,MatFDColoring,const PetscScalar*); 1480b1683b59SHong Zhang 1481b1683b59SHong Zhang /*S 1482b9af6bddSHong Zhang MatTransposeColoring - Object for computing a sparse matrix product C=A*B^T via coloring 1483b1683b59SHong Zhang 1484b1683b59SHong Zhang Level: beginner 1485b1683b59SHong Zhang 1486db781477SPatrick Sanan .seealso: `MatTransposeColoringCreate()` 1487b1683b59SHong Zhang S*/ 1488b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring* MatTransposeColoring; 1489b1683b59SHong Zhang 1490014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat,ISColoring,MatTransposeColoring *); 1491014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring,Mat,Mat); 1492014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring,Mat,Mat); 1493014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring*); 1494b1683b59SHong Zhang 1495639f9d9dSBarry Smith /* 14960752156aSBarry Smith These routines are for partitioning matrices: currently used only 14973eda8832SBarry Smith for adjacency matrix, MatCreateMPIAdj(). 14980752156aSBarry Smith */ 1499ca161407SBarry Smith 1500d9274352SBarry Smith /*S 1501d9274352SBarry Smith MatPartitioning - Object for managing the partitioning of a matrix or graph 1502d9274352SBarry Smith 1503d9274352SBarry Smith Level: beginner 1504d9274352SBarry Smith 1505ec5066bdSBarry Smith Notes: 1506ec5066bdSBarry Smith There is also a PetscPartitioner object that provides the same functionality. It can utilize the MatPartitioning operations 1507ec5066bdSBarry Smith via PetscPartitionerSetType(p,PETSCPARTITIONERMATPARTITIONING) 1508ec5066bdSBarry Smith 1509ec5066bdSBarry Smith Developers Note: 1510ec5066bdSBarry Smith It is an extra maintainance and documentation cost to have two objects with the same functionality. 1511ec5066bdSBarry Smith 1512db781477SPatrick Sanan .seealso: `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()` 1513d9274352SBarry Smith S*/ 151491e9ee9fSBarry Smith typedef struct _p_MatPartitioning* MatPartitioning; 1515d9274352SBarry Smith 151676bdecfbSBarry Smith /*J 15178f6c3df8SBarry Smith MatPartitioningType - String with the name of a PETSc matrix partitioning 1518d9274352SBarry Smith 1519d9274352SBarry Smith Level: beginner 15200d04baf8SBarry Smith dm 1521db781477SPatrick Sanan .seealso: `MatPartitioningCreate()`, `MatPartitioning` 152276bdecfbSBarry Smith J*/ 152319fd82e9SBarry Smith typedef const char* MatPartitioningType; 15242692d6eeSBarry Smith #define MATPARTITIONINGCURRENT "current" 1525aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE "average" 15262692d6eeSBarry Smith #define MATPARTITIONINGSQUARE "square" 15272692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis" 15282692d6eeSBarry Smith #define MATPARTITIONINGCHACO "chaco" 15292692d6eeSBarry Smith #define MATPARTITIONINGPARTY "party" 153050d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch" 153188d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch" 153271306c60Sjroman 1533014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm,MatPartitioning*); 153419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning,MatPartitioningType); 1535014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning,PetscInt); 1536014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning,Mat); 1537014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning,const PetscInt[]); 1538014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning,const PetscReal []); 1539ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning,PetscBool); 1540ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning,PetscBool*); 1541014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning,IS*); 1542fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning,IS*); 1543668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning,IS); 1544f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning,IS*); 1545014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning*); 1546bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[],PetscErrorCode (*)(MatPartitioning)); 1547014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning,PetscViewer); 1548fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning,PetscObject,const char[]); 1549014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning); 155019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning,MatPartitioningType*); 1551ca161407SBarry Smith 155227538973SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part); 1553014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning); 1554014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *); 15550752156aSBarry Smith 1556b6956c12SJose Roman typedef enum { MP_CHACO_MULTILEVEL=1,MP_CHACO_SPECTRAL=2,MP_CHACO_LINEAR=4,MP_CHACO_RANDOM=5,MP_CHACO_SCATTERED=6 } MPChacoGlobalType; 15576a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[]; 1558b6956c12SJose Roman typedef enum { MP_CHACO_KERNIGHAN=1,MP_CHACO_NONE=2 } MPChacoLocalType; 15596a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[]; 1560b6956c12SJose Roman typedef enum { MP_CHACO_LANCZOS=0,MP_CHACO_RQI=1 } MPChacoEigenType; 15616a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[]; 1562b6956c12SJose Roman 1563014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning,MPChacoGlobalType); 1564014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning,MPChacoGlobalType*); 1565014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning,MPChacoLocalType); 1566014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning,MPChacoLocalType*); 1567014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning,PetscReal); 1568014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning,MPChacoEigenType); 1569014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning,MPChacoEigenType*); 1570014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning,PetscReal); 1571014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning,PetscReal*); 1572014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning,PetscInt); 1573014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning,PetscInt*); 157471306c60Sjroman 157571306c60Sjroman #define MP_PARTY_OPT "opt" 157671306c60Sjroman #define MP_PARTY_LIN "lin" 157771306c60Sjroman #define MP_PARTY_SCA "sca" 157871306c60Sjroman #define MP_PARTY_RAN "ran" 157971306c60Sjroman #define MP_PARTY_GBF "gbf" 158071306c60Sjroman #define MP_PARTY_GCF "gcf" 158171306c60Sjroman #define MP_PARTY_BUB "bub" 158271306c60Sjroman #define MP_PARTY_DEF "def" 1583014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning,const char*); 158471306c60Sjroman #define MP_PARTY_HELPFUL_SETS "hs" 158571306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl" 158671306c60Sjroman #define MP_PARTY_NONE "no" 1587014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning,const char*); 1588014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning,PetscReal); 1589014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning,PetscBool); 1590014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning,PetscBool); 159171306c60Sjroman 1592b0ca845eSVaclav Hapla typedef enum { MP_PTSCOTCH_DEFAULT,MP_PTSCOTCH_QUALITY,MP_PTSCOTCH_SPEED,MP_PTSCOTCH_BALANCE,MP_PTSCOTCH_SAFETY,MP_PTSCOTCH_SCALABILITY } MPPTScotchStrategyType; 15936a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[]; 1594e0f1cffaSJose Roman 1595014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning,PetscReal); 1596014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning,PetscReal*); 1597014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning,MPPTScotchStrategyType); 1598014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning,MPPTScotchStrategyType*); 159971306c60Sjroman 1600b43b03e9SMark F. Adams /* 16016294fa2bSFande Kong * hierarchical partitioning 16026294fa2bSFande Kong */ 16034e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning,IS*); 16044e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning,IS*); 16054e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning,PetscInt); 16064e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt); 16076294fa2bSFande Kong 1608014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToVertexGraph(Mat,PetscInt,Mat*); 1609014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat,PetscInt,Mat*); 1610591294e4SBarry Smith 16110752156aSBarry Smith /* 1612c786d857SStefano Zampini If you add entries here you must also add them to src/mat/f90-mod/petscmat.h 1613c786d857SStefano Zampini If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx 1614d4fbbf0eSBarry Smith */ 16151c1c02c0SLois Curfman McInnes typedef enum { MATOP_SET_VALUES=0, 16161c1c02c0SLois Curfman McInnes MATOP_GET_ROW=1, 16171c1c02c0SLois Curfman McInnes MATOP_RESTORE_ROW=2, 16181c1c02c0SLois Curfman McInnes MATOP_MULT=3, 16191c1c02c0SLois Curfman McInnes MATOP_MULT_ADD=4, 16207c922b88SBarry Smith MATOP_MULT_TRANSPOSE=5, 16217c922b88SBarry Smith MATOP_MULT_TRANSPOSE_ADD=6, 16221c1c02c0SLois Curfman McInnes MATOP_SOLVE=7, 16231c1c02c0SLois Curfman McInnes MATOP_SOLVE_ADD=8, 16247c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE=9, 16257c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE_ADD=10, 16261c1c02c0SLois Curfman McInnes MATOP_LUFACTOR=11, 16271c1c02c0SLois Curfman McInnes MATOP_CHOLESKYFACTOR=12, 1628a714c06dSBarry Smith MATOP_SOR=13, 16291c1c02c0SLois Curfman McInnes MATOP_TRANSPOSE=14, 16301c1c02c0SLois Curfman McInnes MATOP_GETINFO=15, 16311c1c02c0SLois Curfman McInnes MATOP_EQUAL=16, 16321c1c02c0SLois Curfman McInnes MATOP_GET_DIAGONAL=17, 16331c1c02c0SLois Curfman McInnes MATOP_DIAGONAL_SCALE=18, 16341c1c02c0SLois Curfman McInnes MATOP_NORM=19, 16351c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_BEGIN=20, 16361c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_END=21, 1637d519adbfSMatthew Knepley MATOP_SET_OPTION=22, 1638d519adbfSMatthew Knepley MATOP_ZERO_ENTRIES=23, 1639d519adbfSMatthew Knepley MATOP_ZERO_ROWS=24, 1640d519adbfSMatthew Knepley MATOP_LUFACTOR_SYMBOLIC=25, 1641d519adbfSMatthew Knepley MATOP_LUFACTOR_NUMERIC=26, 1642d519adbfSMatthew Knepley MATOP_CHOLESKY_FACTOR_SYMBOLIC=27, 1643d519adbfSMatthew Knepley MATOP_CHOLESKY_FACTOR_NUMERIC=28, 1644e5f2d425SStefano Zampini MATOP_SETUP=29, 1645d519adbfSMatthew Knepley MATOP_ILUFACTOR_SYMBOLIC=30, 1646d519adbfSMatthew Knepley MATOP_ICCFACTOR_SYMBOLIC=31, 1647a5b7ff6bSBarry Smith MATOP_GET_DIAGONAL_BLOCK=32, 1648e5f2d425SStefano Zampini MATOP_SET_INF=33, 1649d519adbfSMatthew Knepley MATOP_DUPLICATE=34, 1650d519adbfSMatthew Knepley MATOP_FORWARD_SOLVE=35, 1651d519adbfSMatthew Knepley MATOP_BACKWARD_SOLVE=36, 1652d519adbfSMatthew Knepley MATOP_ILUFACTOR=37, 1653d519adbfSMatthew Knepley MATOP_ICCFACTOR=38, 1654d519adbfSMatthew Knepley MATOP_AXPY=39, 16557dae84e0SHong Zhang MATOP_CREATE_SUBMATRICES=40, 1656d519adbfSMatthew Knepley MATOP_INCREASE_OVERLAP=41, 1657d519adbfSMatthew Knepley MATOP_GET_VALUES=42, 1658d519adbfSMatthew Knepley MATOP_COPY=43, 1659d519adbfSMatthew Knepley MATOP_GET_ROW_MAX=44, 1660d519adbfSMatthew Knepley MATOP_SCALE=45, 1661d519adbfSMatthew Knepley MATOP_SHIFT=46, 166235153367SBarry Smith MATOP_DIAGONAL_SET=47, 16639d39f69dSJed Brown MATOP_ZERO_ROWS_COLUMNS=48, 16649d39f69dSJed Brown MATOP_SET_RANDOM=49, 1665d519adbfSMatthew Knepley MATOP_GET_ROW_IJ=50, 1666d519adbfSMatthew Knepley MATOP_RESTORE_ROW_IJ=51, 1667d519adbfSMatthew Knepley MATOP_GET_COLUMN_IJ=52, 1668d519adbfSMatthew Knepley MATOP_RESTORE_COLUMN_IJ=53, 1669d519adbfSMatthew Knepley MATOP_FDCOLORING_CREATE=54, 1670d519adbfSMatthew Knepley MATOP_COLORING_PATCH=55, 1671d519adbfSMatthew Knepley MATOP_SET_UNFACTORED=56, 1672d519adbfSMatthew Knepley MATOP_PERMUTE=57, 1673d519adbfSMatthew Knepley MATOP_SET_VALUES_BLOCKED=58, 16747dae84e0SHong Zhang MATOP_CREATE_SUBMATRIX=59, 1675d519adbfSMatthew Knepley MATOP_DESTROY=60, 1676d519adbfSMatthew Knepley MATOP_VIEW=61, 1677d519adbfSMatthew Knepley MATOP_CONVERT_FROM=62, 1678e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_63=63 */ 16797bab7c10SHong Zhang MATOP_MATMAT_MULT_SYMBOLIC=64, 16807bab7c10SHong Zhang MATOP_MATMAT_MULT_NUMERIC=65, 1681d519adbfSMatthew Knepley MATOP_SET_LOCAL_TO_GLOBAL_MAP=66, 1682d519adbfSMatthew Knepley MATOP_SET_VALUES_LOCAL=67, 1683d519adbfSMatthew Knepley MATOP_ZERO_ROWS_LOCAL=68, 1684d519adbfSMatthew Knepley MATOP_GET_ROW_MAX_ABS=69, 1685d519adbfSMatthew Knepley MATOP_GET_ROW_MIN_ABS=70, 1686d519adbfSMatthew Knepley MATOP_CONVERT=71, 1687e5f2d425SStefano Zampini MATOP_HAS_OPERATION=72, 16889d39f69dSJed Brown /* MATOP_PLACEHOLDER_73=73, */ 1689d519adbfSMatthew Knepley MATOP_SET_VALUES_ADIFOR=74, 1690d519adbfSMatthew Knepley MATOP_FD_COLORING_APPLY=75, 1691d519adbfSMatthew Knepley MATOP_SET_FROM_OPTIONS=76, 1692e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_77=77, */ 1693e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_78=78, */ 16949d39f69dSJed Brown MATOP_FIND_ZERO_DIAGONALS=79, 1695d519adbfSMatthew Knepley MATOP_MULT_MULTIPLE=80, 1696d519adbfSMatthew Knepley MATOP_SOLVE_MULTIPLE=81, 1697d519adbfSMatthew Knepley MATOP_GET_INERTIA=82, 1698d519adbfSMatthew Knepley MATOP_LOAD=83, 1699d519adbfSMatthew Knepley MATOP_IS_SYMMETRIC=84, 1700d519adbfSMatthew Knepley MATOP_IS_HERMITIAN=85, 1701d519adbfSMatthew Knepley MATOP_IS_STRUCTURALLY_SYMMETRIC=86, 1702820469bcSHong Zhang MATOP_SET_VALUES_BLOCKEDLOCAL=87, 1703b41ce5d5SBarry Smith MATOP_CREATE_VECS=88, 1704e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_89=89, */ 1705d519adbfSMatthew Knepley MATOP_MAT_MULT_SYMBOLIC=90, 1706d519adbfSMatthew Knepley MATOP_MAT_MULT_NUMERIC=91, 1707e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_92=92, */ 1708d519adbfSMatthew Knepley MATOP_PTAP_SYMBOLIC=93, 1709d519adbfSMatthew Knepley MATOP_PTAP_NUMERIC=94, 1710e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_95=95, */ 1711bda6c4cbSBarry Smith MATOP_MAT_TRANSPOSE_MULT_SYMBO=96, 1712bda6c4cbSBarry Smith MATOP_MAT_TRANSPOSE_MULT_NUMER=97, 1713e5f2d425SStefano Zampini MATOP_BIND_TO_CPU=98, 17147a3c3d58SStefano Zampini MATOP_PRODUCTSETFROMOPTIONS=99, 17157a3c3d58SStefano Zampini MATOP_PRODUCTSYMBOLIC=100, 17167a3c3d58SStefano Zampini MATOP_PRODUCTNUMERIC=101, 1717d519adbfSMatthew Knepley MATOP_CONJUGATE=102, 1718e5f2d425SStefano Zampini MATOP_VIEW_NATIVE=103, 1719d519adbfSMatthew Knepley MATOP_SET_VALUES_ROW=104, 1720d519adbfSMatthew Knepley MATOP_REAL_PART=105, 1721bda6c4cbSBarry Smith MATOP_IMAGINARY_PART=106, 1722bda6c4cbSBarry Smith MATOP_GET_ROW_UPPER_TRIANGULAR=107, 1723bda6c4cbSBarry Smith MATOP_RESTORE_ROW_UPPER_TRIANG=108, 1724bda6c4cbSBarry Smith MATOP_MAT_SOLVE=109, 172529eadf9eSStefano Zampini MATOP_MAT_SOLVE_TRANSPOSE=110, 1726d519adbfSMatthew Knepley MATOP_GET_ROW_MIN=111, 17270e8d04f7SBarry Smith MATOP_GET_COLUMN_VECTOR=112, 1728d519adbfSMatthew Knepley MATOP_MISSING_DIAGONAL=113, 17290e8d04f7SBarry Smith MATOP_GET_SEQ_NONZERO_STRUCTUR=114, 173089c6957cSBarry Smith MATOP_CREATE=115, 173189c6957cSBarry Smith MATOP_GET_GHOSTS=116, 17320e8d04f7SBarry Smith MATOP_GET_LOCAL_SUB_MATRIX=117, 17330e8d04f7SBarry Smith MATOP_RESTORE_LOCALSUB_MATRIX=118, 1734eeffb40dSHong Zhang MATOP_MULT_DIAGONAL_BLOCK=119, 17350e8d04f7SBarry Smith MATOP_HERMITIAN_TRANSPOSE=120, 17360e8d04f7SBarry Smith MATOP_MULT_HERMITIAN_TRANSPOSE=121, 17370e8d04f7SBarry Smith MATOP_MULT_HERMITIAN_TRANS_ADD=122, 17380e8d04f7SBarry Smith MATOP_GET_MULTI_PROC_BLOCK=123, 17399d39f69dSJed Brown MATOP_FIND_NONZERO_ROWS=124, 17400e8d04f7SBarry Smith MATOP_GET_COLUMN_NORMS=125, 17419d39f69dSJed Brown MATOP_INVERT_BLOCK_DIAGONAL=126, 1742e5f2d425SStefano Zampini MATOP_INVERT_VBLOCK_DIAGONAL=127, 1743b41ce5d5SBarry Smith MATOP_CREATE_SUB_MATRICES_MPI=128, 17442b8ad9a3SHong Zhang MATOP_SET_VALUES_BATCH=129, 1745e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_130=130, */ 17460e8d04f7SBarry Smith MATOP_TRANSPOSE_MAT_MULT_SYMBO=131, 1747e9b602ebSSatish Balay MATOP_TRANSPOSE_MAT_MULT_NUMER=132, 17480e8d04f7SBarry Smith MATOP_TRANSPOSE_COLORING_CREAT=133, 17490e8d04f7SBarry Smith MATOP_TRANS_COLORING_APPLY_SPT=134, 17500e8d04f7SBarry Smith MATOP_TRANS_COLORING_APPLY_DEN=135, 1751e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_136=136, */ 17520e8d04f7SBarry Smith MATOP_RART_SYMBOLIC=137, 17530e8d04f7SBarry Smith MATOP_RART_NUMERIC=138, 1754e09a3074SHong Zhang MATOP_SET_BLOCK_SIZES=139, 1755f9426fe0SMark Adams MATOP_AYPX=140, 17561919a2e2SJed Brown MATOP_RESIDUAL=141, 17579c8f2541SHong Zhang MATOP_FDCOLORING_SETUP=142, 1758e5f2d425SStefano Zampini MATOP_FIND_OFFBLOCK_ENTRIES=143, 17592d033e1fSHong Zhang MATOP_MPICONCATENATESEQ=144, 1760bb01b7b0SPatrick Sanan MATOP_DESTROYSUBMATRICES=145, 1761e265f6d6SPatrick Sanan MATOP_TRANSPOSE_SOLVE=146, 1762e265f6d6SPatrick Sanan MATOP_GET_VALUES_LOCAL=147 1763fae171e0SBarry Smith } MatOperation; 17640c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat,MatOperation,void(*)(void)); 1765976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat,MatOperation,void(**)(void)); 1766976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat,MatOperation,PetscBool*); 176794342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat,PetscBool*); 17689fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatProductClear() (since version 3.14)") static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A) {return MatProductClear(A);} 1769014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat,MatOperation,void(*)(void)); 1770014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat,MatOperation,void(**)(void)); 1771014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat,void*); 1772db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat,VecType); 1773f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat,PetscErrorCode (*)(void*,Vec,Vec),Vec,void*,PetscBool*); 1774f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat,PetscErrorCode (*)(void*,Vec,Vec),Vec,void*,PetscBool*); 17750c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat); 1776b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat,MatProductType,PetscErrorCode (*)(Mat,Mat,Mat,void**),PetscErrorCode (*)(Mat,Mat,Mat,void*),PetscErrorCode (*)(void*),MatType,MatType); 1777b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat,PetscBool*); 1778112a2221SBarry Smith 177990ace30eSBarry Smith /* 178090ace30eSBarry Smith Codes for matrices stored on disk. By default they are 178190ace30eSBarry Smith stored in a universal format. By changing the format with 17826a9046bcSBarry Smith PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will 178390ace30eSBarry Smith be stored in a way natural for the matrix, for example dense matrices 178490ace30eSBarry Smith would be stored as dense. Matrices stored this way may only be 1785f4403165SShri Abhyankar read into matrices of the same type. 178690ace30eSBarry Smith */ 178790ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1 178890ace30eSBarry Smith 1789014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat,PetscReal); 179075d48cdbSStefano Zampini 17918546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat,MatType); 179275d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 179375d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat,PetscBool); 1794f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat,PetscBool); 1795014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat,Mat*); 17963b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat,Mat*); 1797014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat,Mat); 1798e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat,ISLocalToGlobalMapping*,ISLocalToGlobalMapping*); 179925ef9dfeSBarry Smith PETSC_EXTERN PETSC_DEPRECATED_FUNCTION("Use the MatConvert() interface (since version 3.10)") PetscErrorCode MatISGetMPIXAIJ(Mat,MatReuse,Mat*); 18001f4e1ec7SBarry Smith 1801d9274352SBarry Smith /*S 1802d9274352SBarry Smith MatNullSpace - Object that removes a null space from a vector, i.e. 1803cb6b9846SMatthew Knepley orthogonalizes the vector to a subspace 1804d9274352SBarry Smith 1805f7a9e4ceSBarry Smith Level: advanced 1806d9274352SBarry Smith 1807db781477SPatrick Sanan .seealso: `MatNullSpaceCreate()` 1808d9274352SBarry Smith S*/ 180974637425SBarry Smith typedef struct _p_MatNullSpace* MatNullSpace; 1810d9274352SBarry Smith 1811014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm,PetscBool ,PetscInt,const Vec[],MatNullSpace*); 1812014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace,PetscErrorCode (*)(MatNullSpace,Vec,void*),void*); 1813014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace*); 1814d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace,Vec); 1815014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *); 18165fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *); 18175fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat,MatNullSpace); 1818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat,MatNullSpace); 1819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat,MatNullSpace); 1820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat,MatNullSpace*); 1821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace,Mat,PetscBool *); 1822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace,PetscViewer); 1823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace,PetscBool*,PetscInt*,const Vec**); 1824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec,MatNullSpace*); 182574637425SBarry Smith 1826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat,IS); 1827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat,PetscReal); 1828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat,PetscInt *); 18293f1d51d7SBarry Smith 1830014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat,PetscInt,Mat*); 1831014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat,PetscInt,Mat*); 1832014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat,Mat*); 1833c4f061fbSSatish Balay 18340bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat,MatType,Mat*); 18350bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat,MatType,Mat*); 18360bacdadaSStefano Zampini 18379fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatComputeOperator() (since version 3.12)") static inline PetscErrorCode MatComputeExplicitOperator(Mat A,Mat* B) { return MatComputeOperator(A,NULL,B); } 18389fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatComputeOperatorTranspose() (since version 3.12)") static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A,Mat* B) { return MatComputeOperatorTranspose(A,NULL,B); } 1839b0a32e0cSBarry Smith 184049bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat,PetscInt,PetscInt,const PetscScalar[],const PetscScalar[],Mat*); 184149bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat,Mat*); 1842a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat,PetscInt*,PetscInt*,PetscScalar**); 1843a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat,PetscInt*,PetscInt*,const PetscScalar**); 1844a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat,PetscScalar**); 1845a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat,const PetscScalar**); 1846a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat,PetscInt*,PetscInt*,PetscScalar**); 1847a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat,PetscInt*,PetscInt*,const PetscScalar**); 1848a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat,PetscScalar**); 1849a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat,const PetscScalar**); 1850dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat,Mat); 1851dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat,PetscInt,PetscInt,const PetscScalar[]); 1852dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat,PetscInt,PetscInt,const PetscScalar[]); 1853910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat,PetscBool*); 185449bd79ccSDebojyoti Ghosh 1855014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat,Vec); 185604f1ad80SBarry Smith 1857014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,Mat*); 1858014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat,Vec,Vec); 1859014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat,PetscErrorCode(*)(void*,Vec,Vec),void*); 1860014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat,PetscErrorCode (*)(void*,PetscInt,Vec,PetscScalar*)); 1861014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat,PetscErrorCode (*)(void*,Vec)); 1862014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat,PetscScalar[],PetscInt); 1863014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat); 1864014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat,PetscReal); 1865014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat,PetscInt); 1866014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat,PetscScalar *); 1867014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat,const char[]); 1868014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void*,Vec,Vec,PetscScalar*); 1869014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat,PetscErrorCode (*)(void*,Vec,Vec,PetscScalar*),void*); 1870e884886fSBarry Smith 18716370053bSBarry Smith /*S 18726370053bSBarry Smith MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free 18736370053bSBarry Smith Jacobian vector products 1874e884886fSBarry Smith 187595452b02SPatrick Sanan Notes: 187695452b02SPatrick Sanan MATMFFD is a specific MatType which uses the MatMFFD data structure 18776370053bSBarry Smith 18786370053bSBarry Smith MatMFFD*() methods actually take the Mat as their first argument. Not a MatMFFD data structure 18796370053bSBarry Smith 18806370053bSBarry Smith Level: developer 18816370053bSBarry Smith 1882db781477SPatrick Sanan .seealso: `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()` 18836370053bSBarry Smith S*/ 1884e884886fSBarry Smith typedef struct _p_MatMFFD* MatMFFD; 1885e884886fSBarry Smith 188676bdecfbSBarry Smith /*J 1887e884886fSBarry Smith MatMFFDType - algorithm used to compute the h used in computing matrix-vector products via differencing of the function 1888e884886fSBarry Smith 1889e884886fSBarry Smith Level: beginner 1890e884886fSBarry Smith 1891db781477SPatrick Sanan .seealso: `MatMFFDSetType()`, `MatMFFDRegister()` 189276bdecfbSBarry Smith J*/ 189319fd82e9SBarry Smith typedef const char* MatMFFDType; 1894e884886fSBarry Smith #define MATMFFD_DS "ds" 1895e884886fSBarry Smith #define MATMFFD_WP "wp" 1896e884886fSBarry Smith 189719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat,MatMFFDType); 1898bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[],PetscErrorCode (*)(MatMFFD)); 1899e884886fSBarry Smith 1900014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat,PetscReal); 1901014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat,PetscBool); 1902e884886fSBarry Smith 190361ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring,MatMFFDType); 190461ab5df0SBarry Smith 1905014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *); 1906014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *); 19077dbadf16SMatthew Knepley 190853022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS 190953022affSStefano Zampini PETSC_EXTERN_TYPEDEF typedef PetscScalar (*MatH2OpusKernel)(PetscInt,PetscReal[],PetscReal[],void*); 191053022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscReal[],PetscBool,MatH2OpusKernel,void*,PetscReal,PetscInt,PetscInt,Mat*); 191153022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat,PetscInt,const PetscReal[],PetscBool,PetscReal,PetscInt,PetscInt,PetscInt,PetscReal,Mat*); 191253022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat,Mat,PetscInt,PetscReal); 191353022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat); 191453022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat,PetscReal); 191553022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat,PetscBool); 191653022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat,PetscBool*); 191753022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat,IS*); 191853022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat,PetscBool,Vec,Vec*); 1919300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat,Mat,Mat,PetscScalar); 1920a0d2e7d8SStefano Zampini #endif 1921a0d2e7d8SStefano Zampini 1922c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL 192398e73e17SPierre Jolivet PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatHtoolKernel)(PetscInt,PetscInt,PetscInt,const PetscInt*,const PetscInt*,PetscScalar*,void*); 1924c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscReal[],const PetscReal[],MatHtoolKernel,void*,Mat*); 1925c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat,MatHtoolKernel,void*); 192698e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat,IS*); 192798e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat,IS*); 192898e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat,PetscBool); 1929c7a4214aSPierre Jolivet /*E 1930c7a4214aSPierre Jolivet MatHtoolCompressorType - Indicates the type of compressor used by a MATHTOOL 1931c7a4214aSPierre Jolivet 1932c7a4214aSPierre Jolivet Level: beginner 1933c7a4214aSPierre Jolivet 1934c7a4214aSPierre Jolivet Values: 1935c7a4214aSPierre Jolivet + MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA (default) - symmetric partial adaptive cross approximation 1936c7a4214aSPierre Jolivet . MAT_HTOOL_COMPRESSOR_FULL_ACA - full adaptive cross approximation 1937c7a4214aSPierre Jolivet - MAT_HTOOL_COMPRESSOR_SVD - singular value decomposition 1938c7a4214aSPierre Jolivet 1939db781477SPatrick Sanan .seealso: `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType` 1940c7a4214aSPierre Jolivet E*/ 1941c7a4214aSPierre Jolivet typedef enum { MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA, MAT_HTOOL_COMPRESSOR_FULL_ACA, MAT_HTOOL_COMPRESSOR_SVD } MatHtoolCompressorType; 194298e73e17SPierre Jolivet /*E 194398e73e17SPierre Jolivet MatHtoolClusteringType - Indicates the type of clustering used by a MATHTOOL 194498e73e17SPierre Jolivet 194598e73e17SPierre Jolivet Level: beginner 194698e73e17SPierre Jolivet 194798e73e17SPierre Jolivet Values: 194898e73e17SPierre Jolivet + MAT_HTOOL_CLUSTERING_PCA_REGULAR (default) - axis computed via principle component analysis, split uniformly 194998e73e17SPierre Jolivet . MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC - axis computed via principle component analysis, split barycentrically 195098e73e17SPierre Jolivet . MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR - axis along the largest extent of the bounding box, split uniformly 195198e73e17SPierre Jolivet - MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC - axis along the largest extent of the bounding box, split barycentrically 195298e73e17SPierre Jolivet 195398e73e17SPierre Jolivet Notes: higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types 195498e73e17SPierre Jolivet 1955db781477SPatrick Sanan .seealso: `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType` 195698e73e17SPierre Jolivet E*/ 195798e73e17SPierre Jolivet typedef enum { MAT_HTOOL_CLUSTERING_PCA_REGULAR, MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC, MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR, MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC } MatHtoolClusteringType; 1958c7a4214aSPierre Jolivet #endif 1959c7a4214aSPierre Jolivet 196097969023SHong Zhang /* 196197969023SHong Zhang PETSc interface to MUMPS 196297969023SHong Zhang */ 196397969023SHong Zhang #ifdef PETSC_HAVE_MUMPS 1964014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat,PetscInt,PetscInt); 1965bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat,PetscInt,PetscInt*); 1966b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat,PetscInt,PetscReal); 1967bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat,PetscInt,PetscReal*); 1968bc6112feSHong Zhang 1969ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat,PetscInt,PetscInt*); 1970ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat,PetscInt,PetscInt*); 1971ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat,PetscInt,PetscReal*); 1972ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat,PetscInt,PetscReal*); 197389a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat,Mat); 19740e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat,Mat); 197597969023SHong Zhang #endif 197623a5497aSJed Brown 1977d954db57SHong Zhang /* 1978d615f992SSatish Balay PETSc interface to Mkl_Pardiso 1979b500a6b7SJose David Bermeol */ 1980b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO 1981d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat,PetscInt,PetscInt); 1982b500a6b7SJose David Bermeol #endif 1983b500a6b7SJose David Bermeol 1984b500a6b7SJose David Bermeol /* 1985d305a81bSVasiliy Kozyrev PETSc interface to Mkl_CPardiso 1986d305a81bSVasiliy Kozyrev */ 1987d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO 1988d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat,PetscInt,PetscInt); 1989d305a81bSVasiliy Kozyrev #endif 1990d305a81bSVasiliy Kozyrev 1991d305a81bSVasiliy Kozyrev /* 1992d954db57SHong Zhang PETSc interface to SUPERLU 1993d954db57SHong Zhang */ 1994d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU 1995014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat,PetscReal); 1996d954db57SHong Zhang #endif 1997d954db57SHong Zhang 1998fb785984SHong Zhang /* 1999fb785984SHong Zhang PETSc interface to SUPERLU_DIST 2000fb785984SHong Zhang */ 2001fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST 2002fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat,PetscScalar*); 2003fb785984SHong Zhang #endif 2004fb785984SHong Zhang 2005575704cbSPieter Ghysels /* 2006575704cbSPieter Ghysels PETSc interface to STRUMPACK 2007575704cbSPieter Ghysels */ 2008575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK 2009542aee0fSPieter Ghysels /*E 2010542aee0fSPieter Ghysels MatSTRUMPACKReordering - sparsity reducing ordering to be used in STRUMPACK 2011542aee0fSPieter Ghysels 2012542aee0fSPieter Ghysels Level: intermediate 2013542aee0fSPieter Ghysels E*/ 201434f43fa5SPieter Ghysels typedef enum {MAT_STRUMPACK_NATURAL=0, 201534f43fa5SPieter Ghysels MAT_STRUMPACK_METIS=1, 201634f43fa5SPieter Ghysels MAT_STRUMPACK_PARMETIS=2, 201734f43fa5SPieter Ghysels MAT_STRUMPACK_SCOTCH=3, 201834f43fa5SPieter Ghysels MAT_STRUMPACK_PTSCOTCH=4, 201934f43fa5SPieter Ghysels MAT_STRUMPACK_RCM=5} MatSTRUMPACKReordering; 202034f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat,MatSTRUMPACKReordering); 2021575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat,PetscBool); 202234f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSRelTol(Mat,PetscReal); 20239fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSTRUMPACKSetHSSRelTol() (since version 3.9)") static inline PetscErrorCode MatSTRUMPACKSetHSSRelCompTol(Mat mat,PetscReal rtol) {return MatSTRUMPACKSetHSSRelTol(mat,rtol);} 202434f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSAbsTol(Mat,PetscReal); 202534f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMinSepSize(Mat,PetscInt); 20269fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSTRUMPACKSetHSSMinSepSize() (since version 3.9)") static inline PetscErrorCode MatSTRUMPACKSetHSSMinSize(Mat mat,PetscInt hssminsize) {return MatSTRUMPACKSetHSSMinSepSize(mat,hssminsize);} 202734f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMaxRank(Mat,PetscInt); 2028a36bf211SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSLeafSize(Mat,PetscInt); 2029575704cbSPieter Ghysels #endif 2030575704cbSPieter Ghysels 2031b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat,PetscBool); 20322216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat,PetscBool*); 20339fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatBindToCPU (since v3.13)") static inline PetscErrorCode MatPinToCPU(Mat A,PetscBool flg) {return MatBindToCPU(A,flg);} 203465a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat,PetscBool); 2035e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat,PetscBool *); 2036e7e92044SBarry Smith 2037042217e8SBarry Smith typedef struct _n_SplitCSRMat *PetscSplitCSRDataStructure; 2038042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatCUSPARSEGetDeviceMatWrite(Mat,PetscSplitCSRDataStructure*); 2039a587d139SMark 2040a587d139SMark #ifdef PETSC_HAVE_KOKKOS_KERNELS 2041042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatKokkosGetDeviceMatWrite(Mat,PetscSplitCSRDataStructure*); 2042042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJKokkosSetDeviceMat(Mat,PetscSplitCSRDataStructure); 2043042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJKokkosGetDeviceMat(Mat,PetscSplitCSRDataStructure*); 2044a587d139SMark #endif 2045a587d139SMark 2046aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA 20473f9c0db1SPaul Mullowney /*E 2048e057df02SPaul Mullowney MatCUSPARSEStorageFormat - indicates the storage format for CUSPARSE (GPU) 20492692e278SPaul Mullowney matrices. 2050e057df02SPaul Mullowney 2051e057df02SPaul Mullowney Not Collective 2052e057df02SPaul Mullowney 20538468deeeSKarl Rupp + MAT_CUSPARSE_CSR - Compressed Sparse Row 20542692e278SPaul Mullowney . MAT_CUSPARSE_ELL - Ellpack (requires CUDA 4.2 or later). 20552692e278SPaul Mullowney - MAT_CUSPARSE_HYB - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later). 2056e057df02SPaul Mullowney 2057e057df02SPaul Mullowney Level: intermediate 2058e057df02SPaul Mullowney 2059af0996ceSBarry Smith Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 2060e057df02SPaul Mullowney 2061db781477SPatrick Sanan .seealso: `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation` 2062e057df02SPaul Mullowney E*/ 2063e057df02SPaul Mullowney 20643f9c0db1SPaul Mullowney typedef enum {MAT_CUSPARSE_CSR, MAT_CUSPARSE_ELL, MAT_CUSPARSE_HYB} MatCUSPARSEStorageFormat; 2065e057df02SPaul Mullowney 2066e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */ 2067e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[]; 2068e057df02SPaul Mullowney 20693f9c0db1SPaul Mullowney /*E 2070e057df02SPaul Mullowney MatCUSPARSEFormatOperation - indicates the operation of CUSPARSE (GPU) 20712692e278SPaul Mullowney matrices whose operation should use a particular storage format. 2072e057df02SPaul Mullowney 2073e057df02SPaul Mullowney Not Collective 2074e057df02SPaul Mullowney 20758468deeeSKarl Rupp + MAT_CUSPARSE_MULT_DIAG - sets the storage format for the diagonal matrix in the parallel MatMult 20768468deeeSKarl Rupp . MAT_CUSPARSE_MULT_OFFDIAG - sets the storage format for the offdiagonal matrix in the parallel MatMult 20778468deeeSKarl Rupp . MAT_CUSPARSE_MULT - sets the storage format for the entire matrix in the serial (single GPU) MatMult 20788468deeeSKarl Rupp - MAT_CUSPARSE_ALL - sets the storage format for all CUSPARSE (GPU) matrices 2079e057df02SPaul Mullowney 2080e057df02SPaul Mullowney Level: intermediate 2081e057df02SPaul Mullowney 2082db781477SPatrick Sanan .seealso: `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat` 2083e057df02SPaul Mullowney E*/ 208436d62e41SPaul Mullowney typedef enum {MAT_CUSPARSE_MULT_DIAG, MAT_CUSPARSE_MULT_OFFDIAG, MAT_CUSPARSE_MULT, MAT_CUSPARSE_ALL} MatCUSPARSEFormatOperation; 2085e057df02SPaul Mullowney 208610e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 208710e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 2088e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat,MatCUSPARSEFormatOperation,MatCUSPARSEStorageFormat); 2089365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat,PetscBool); 2090e8d2b73aSMark Adams typedef struct Mat_SeqAIJCUSPARSETriFactors* Mat_SeqAIJCUSPARSETriFactors_p; 20915f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat,PetscBool,const int**,const int**); 20925f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat,PetscBool,const int**,const int**); 20935f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat,const PetscScalar**); 20945f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat,const PetscScalar**); 20955f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat,PetscScalar**); 20965f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat,PetscScalar**); 20975f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat,PetscScalar**); 20985f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat,PetscScalar**); 2099637a0070SStefano Zampini 2100637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar[],Mat*); 2101637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm,PetscInt,PetscInt,PetscScalar[],Mat*); 2102637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat,PetscScalar[]); 2103637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqDenseCUDASetPreallocation(Mat,PetscScalar[]); 2104637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat,PetscScalar**); 2105637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat,const PetscScalar**); 2106637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat,PetscScalar**); 2107637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat,PetscScalar**); 2108637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat,const PetscScalar**); 2109637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat,PetscScalar**); 2110637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat,const PetscScalar*); 2111d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat,const PetscScalar*); 2112637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat); 21133fa6b06aSMark Adams 21149ae82921SPaul Mullowney #endif 21159ae82921SPaul Mullowney 2116d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL) 2117d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 2118d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 2119d67ff14aSKarl Rupp #endif 2120d67ff14aSKarl Rupp 212154efbe56SHong Zhang /* 212254efbe56SHong Zhang PETSc interface to FFTW 212354efbe56SHong Zhang */ 212454efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW) 2125014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat,Vec,Vec); 2126014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat,Vec,Vec); 21272a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat,Vec*,Vec*,Vec*); 212854efbe56SHong Zhang #endif 212954efbe56SHong Zhang 2130d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 2131d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,Mat*); 2132d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat,PetscInt,PetscInt); 2133d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat,PetscInt*,PetscInt*); 2134d24d4204SJose E. Roman #endif 2135d24d4204SJose E. Roman 2136014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm,PetscInt,const IS[],PetscInt,const IS[],const Mat[],Mat*); 2137014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat,PetscInt*,PetscInt*); 2138014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat,IS[],IS[]); 2139014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat,IS[],IS[]); 2140014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat,PetscInt*,PetscInt*,Mat***); 2141014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat,PetscInt,PetscInt,Mat*); 214219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat,VecType); 2143014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat,PetscInt,const IS[],PetscInt,const IS[],const Mat[]); 2144014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat,PetscInt,PetscInt,Mat); 2145d8588912SDave May 21464325cce7SMatthew G Knepley PETSC_EXTERN PetscErrorCode MatChop(Mat,PetscReal); 2147e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat,PetscReal,PetscInt*); 21484325cce7SMatthew G Knepley 2149b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat,PetscInt,PetscInt*,IS**); 215053dd7562SDmitry Karpeev 2151c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat,PetscBool,Mat); 2152c094ef40SMatthew G. Knepley 2153539c167fSBarry Smith PETSC_INTERN PetscErrorCode MatHeaderMerge(Mat,Mat*); 2154539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat,Mat*); 21551a2c6b5cSJunchao Zhang 21567ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat,const PetscInt**,const PetscInt**,PetscScalar**,PetscMemType*); 215772833a62Smarkadams4 215872833a62Smarkadams4 PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat,PetscBool,PetscBool,Mat*); 215972833a62Smarkadams4 PETSC_EXTERN PetscErrorCode MatFilter(Mat,PetscReal,Mat*); 216072833a62Smarkadams4 216123a5497aSJed Brown #endif 2162