xref: /petsc/include/petscmat.h (revision 6a3d25952bcc09d31b72985d60f0bc62c77fff78)
12eac72dbSBarry Smith /*
22eac72dbSBarry Smith      Include file for the matrix component of PETSc
32eac72dbSBarry Smith */
426bd1501SBarry Smith #ifndef PETSCMAT_H
526bd1501SBarry Smith #define PETSCMAT_H
6ac09b921SBarry Smith 
72c8e378dSBarry Smith #include <petscvec.h>
82eac72dbSBarry Smith 
9ac09b921SBarry Smith /* SUBMANSEC = Mat */
10ac09b921SBarry Smith 
11d9274352SBarry Smith /*S
128f6c3df8SBarry Smith      Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without
138f6c3df8SBarry Smith            an explicit sparse representation (such as matrix-free operators)
142eac72dbSBarry Smith 
15d91e6319SBarry Smith    Level: beginner
16d91e6319SBarry Smith 
17db781477SPatrick Sanan .seealso: `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()`
18d9274352SBarry Smith S*/
19d9274352SBarry Smith typedef struct _p_Mat*           Mat;
20d9274352SBarry Smith 
2176bdecfbSBarry Smith /*J
228f6c3df8SBarry Smith     MatType - String with the name of a PETSc matrix type
23d9274352SBarry Smith 
24d9274352SBarry Smith    Level: beginner
25d9274352SBarry Smith 
26db781477SPatrick Sanan .seealso: `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()`
2776bdecfbSBarry Smith J*/
2819fd82e9SBarry Smith typedef const char* MatType;
29273d9f13SBarry Smith #define MATSAME            "same"
305a11e1b2SBarry Smith #define MATMAIJ            "maij"
31273d9f13SBarry Smith #define MATSEQMAIJ         "seqmaij"
32273d9f13SBarry Smith #define MATMPIMAIJ         "mpimaij"
3349bd79ccSDebojyoti Ghosh #define MATKAIJ            "kaij"
3449bd79ccSDebojyoti Ghosh #define MATSEQKAIJ         "seqkaij"
3549bd79ccSDebojyoti Ghosh #define MATMPIKAIJ         "mpikaij"
36273d9f13SBarry Smith #define MATIS              "is"
375a11e1b2SBarry Smith #define MATAIJ             "aij"
38273d9f13SBarry Smith #define MATSEQAIJ          "seqaij"
39273d9f13SBarry Smith #define MATMPIAIJ          "mpiaij"
405a11e1b2SBarry Smith #define MATAIJCRL          "aijcrl"
415a11e1b2SBarry Smith #define MATSEQAIJCRL       "seqaijcrl"
425a11e1b2SBarry Smith #define MATMPIAIJCRL       "mpiaijcrl"
439ae82921SPaul Mullowney #define MATAIJCUSPARSE     "aijcusparse"
449ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE  "seqaijcusparse"
459ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE  "mpiaijcusparse"
468c3ff71bSJunchao Zhang #define MATAIJKOKKOS       "aijkokkos"
478c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS    "seqaijkokkos"
488c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS    "mpiaijkokkos"
49d67ff14aSKarl Rupp #define MATAIJVIENNACL     "aijviennacl"
50d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL  "seqaijviennacl"
51d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL  "mpiaijviennacl"
525a11e1b2SBarry Smith #define MATAIJPERM         "aijperm"
535a11e1b2SBarry Smith #define MATSEQAIJPERM      "seqaijperm"
545a11e1b2SBarry Smith #define MATMPIAIJPERM      "mpiaijperm"
554dfdc2d9SRichard Tran Mills #define MATAIJSELL         "aijsell"
564dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL      "seqaijsell"
574dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL      "mpiaijsell"
584a2a386eSRichard Tran Mills #define MATAIJMKL          "aijmkl"
594a2a386eSRichard Tran Mills #define MATSEQAIJMKL       "seqaijmkl"
604a2a386eSRichard Tran Mills #define MATMPIAIJMKL       "mpiaijmkl"
61b5b72c8aSIrina Sokolova #define MATBAIJMKL         "baijmkl"
62b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL      "seqbaijmkl"
63b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL      "mpibaijmkl"
64273d9f13SBarry Smith #define MATSHELL           "shell"
65c1fff1c6SRichard Tran Mills #define MATCENTERING       "centering"
665a11e1b2SBarry Smith #define MATDENSE           "dense"
67637a0070SStefano Zampini #define MATDENSECUDA       "densecuda"
68209238afSKris Buschelman #define MATSEQDENSE        "seqdense"
69bfc799aaSStefano Zampini #define MATSEQDENSECUDA    "seqdensecuda"
70273d9f13SBarry Smith #define MATMPIDENSE        "mpidense"
71637a0070SStefano Zampini #define MATMPIDENSECUDA    "mpidensecuda"
72db31f6deSJed Brown #define MATELEMENTAL       "elemental"
73d24d4204SJose E. Roman #define MATSCALAPACK       "scalapack"
745a11e1b2SBarry Smith #define MATBAIJ            "baij"
75273d9f13SBarry Smith #define MATSEQBAIJ         "seqbaij"
76273d9f13SBarry Smith #define MATMPIBAIJ         "mpibaij"
77273d9f13SBarry Smith #define MATMPIADJ          "mpiadj"
785a11e1b2SBarry Smith #define MATSBAIJ           "sbaij"
79273d9f13SBarry Smith #define MATSEQSBAIJ        "seqsbaij"
80273d9f13SBarry Smith #define MATMPISBAIJ        "mpisbaij"
81cebc7f6cSBarry Smith #define MATMFFD            "mffd"
82c8a8475eSBarry Smith #define MATNORMAL          "normal"
83c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN "normalh"
84ab92ecdeSBarry Smith #define MATLRC             "lrc"
852a6744ebSBarry Smith #define MATSCATTER         "scatter"
86421e10b8SBarry Smith #define MATBLOCKMAT        "blockmat"
87793850ffSBarry Smith #define MATCOMPOSITE       "composite"
881f8c7532SHong Zhang #define MATFFT             "fft"
891f8c7532SHong Zhang #define MATFFTW            "fftw"
90e133240eSMatthew G Knepley #define MATSEQCUFFT        "seqcufft"
91557cca28SSatish Balay #define MATTRANSPOSEMAT    "transpose"
9272ca8751SBarry Smith #define MATSCHURCOMPLEMENT "schurcomplement"
931d6018f0SLisandro Dalcin #define MATPYTHON          "python"
9463c07aadSStefano Zampini #define MATHYPRE           "hypre"
95f91d8e95SBarry Smith #define MATHYPRESTRUCT     "hyprestruct"
96a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT    "hypresstruct"
97ee1cef2cSJed Brown #define MATSUBMATRIX       "submatrix"
982c0dbf93SJed Brown #define MATLOCALREF        "localref"
99d8588912SDave May #define MATNEST            "nest"
100c094ef40SMatthew G. Knepley #define MATPREALLOCATOR    "preallocator"
101d4002b98SHong Zhang #define MATSELL            "sell"
102d4002b98SHong Zhang #define MATSEQSELL         "seqsell"
103d4002b98SHong Zhang #define MATMPISELL         "mpisell"
104a3b2e22bSHong Zhang #define MATDUMMY           "dummy"
105cd929ea3SAlp Dener #define MATLMVM            "lmvm"
10678e4361aSAlp Dener #define MATLMVMDFP         "lmvmdfp"
10778e4361aSAlp Dener #define MATLMVMBFGS        "lmvmbfgs"
10878e4361aSAlp Dener #define MATLMVMSR1         "lmvmsr1"
109864588a7SAlp Dener #define MATLMVMBROYDEN     "lmvmbroyden"
110864588a7SAlp Dener #define MATLMVMBADBROYDEN  "lmvmbadbroyden"
111864588a7SAlp Dener #define MATLMVMSYMBROYDEN  "lmvmsymbroyden"
112864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN "lmvmsymbadbroyden"
113864588a7SAlp Dener #define MATLMVMDIAGBROYDEN   "lmvmdiagbroyden"
1143423f386SBarry Smith #define MATCONSTANTDIAGONAL  "constantdiagonal"
115c7a4214aSPierre Jolivet #define MATHTOOL           "htool"
11653022affSStefano Zampini #define MATH2OPUS          "h2opus"
117773941d6SBarry Smith 
11876bdecfbSBarry Smith /*J
1193ca39a21SBarry Smith     MatSolverType - String with the name of a PETSc matrix solver type.
1209989ab13SBarry Smith 
121c2b89b5dSBarry Smith     For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc
1229989ab13SBarry Smith 
1239989ab13SBarry Smith    Level: beginner
1249989ab13SBarry Smith 
1253f498edaSToby Isaac    Notes:  MATSOLVERUMFPACK, MATSOLVERCHOLMOD, MATSOLVERKLU, MATSOLVERSPQR form the SuiteSparse package for which you can use --download-suitesparse
126c7ccbb75SBarry Smith 
127db781477SPatrick Sanan .seealso: `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()`
12876bdecfbSBarry Smith J*/
129ea799195SBarry Smith typedef const char* MatSolverType;
1302692d6eeSBarry Smith #define MATSOLVERSUPERLU          "superlu"
1312692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST     "superlu_dist"
13208f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK        "strumpack"
1332692d6eeSBarry Smith #define MATSOLVERUMFPACK          "umfpack"
13420db9a53SJed Brown #define MATSOLVERCHOLMOD          "cholmod"
135d89f5e7aSBarry Smith #define MATSOLVERKLU              "klu"
136418810c4SBarry Smith #define MATSOLVERSPARSEELEMENTAL  "sparseelemental"
137d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL        "elemental"
138d24d4204SJose E. Roman #define MATSOLVERSCALAPACK        "scalapack"
1392692d6eeSBarry Smith #define MATSOLVERESSL             "essl"
1402692d6eeSBarry Smith #define MATSOLVERLUSOL            "lusol"
1412692d6eeSBarry Smith #define MATSOLVERMUMPS            "mumps"
142d615f992SSatish Balay #define MATSOLVERMKL_PARDISO      "mkl_pardiso"
143d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO     "mkl_cpardiso"
1442692d6eeSBarry Smith #define MATSOLVERPASTIX           "pastix"
1452692d6eeSBarry Smith #define MATSOLVERMATLAB           "matlab"
1462692d6eeSBarry Smith #define MATSOLVERPETSC            "petsc"
1472692d6eeSBarry Smith #define MATSOLVERBAS              "bas"
1489ae82921SPaul Mullowney #define MATSOLVERCUSPARSE         "cusparse"
149bddcd29dSMark Adams #define MATSOLVERCUSPARSEBAND     "cusparseband"
150bfc799aaSStefano Zampini #define MATSOLVERCUDA             "cuda"
151930e68a5SMark Adams #define MATSOLVERKOKKOS           "kokkos"
1528f7e8f9dSMark Adams #define MATSOLVERKOKKOSDEVICE     "kokkosdevice"
153a2fc1e05SToby Isaac #define MATSOLVERSPQR             "spqr"
154c0cdd4a1SDahai Guo 
155b24902e0SBarry Smith /*E
156b24902e0SBarry Smith     MatFactorType - indicates what type of factorization is requested
157b24902e0SBarry Smith 
158b24902e0SBarry Smith     Level: beginner
159b24902e0SBarry Smith 
160af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
161b24902e0SBarry Smith 
162db781477SPatrick Sanan .seealso: `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()`
163b24902e0SBarry Smith E*/
1643f498edaSToby Isaac typedef enum {MAT_FACTOR_NONE, MAT_FACTOR_LU, MAT_FACTOR_CHOLESKY, MAT_FACTOR_ILU, MAT_FACTOR_ICC, MAT_FACTOR_ILUDT, MAT_FACTOR_QR, MAT_FACTOR_NUM_TYPES} MatFactorType;
165014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[];
166e92e720dSBarry Smith 
167ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat,MatSolverType,MatFactorType,Mat*);
168ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat,MatSolverType,MatFactorType,PetscBool *);
169f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool*);
1709fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatFactorGetCanUseOrdering() (since version 3.15)") static inline PetscErrorCode MatFactorGetUseOrdering(Mat A,PetscBool *b) {return MatFactorGetCanUseOrdering(A,b);}
171ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat,MatSolverType*);
172014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat,MatFactorType*);
1737abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat,MatFactorType);
1742430ea28SJose E. Roman PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatSolverFunction)(Mat,MatFactorType,Mat*);
1752430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType,MatType,MatFactorType,MatSolverFunction);
1762430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType,MatType,MatFactorType,PetscBool*,PetscBool*,MatSolverFunction*);
17725ef9dfeSBarry Smith typedef MatSolverType MatSolverPackage PETSC_DEPRECATED_TYPEDEF("Use MatSolverType (since version 3.9)");
1789fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSolverTypeRegister() (since version 3.9)") static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype,MatType mtype,MatFactorType ftype,MatSolverFunction f)
179c19b563cSJed Brown { return MatSolverTypeRegister(stype,mtype,ftype,f); }
1809fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSolverTypeGet() (since version 3.9)") static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype,MatType mtype,MatFactorType ftype,PetscBool *foundmtype,PetscBool *foundstype,MatSolverFunction *f)
181c19b563cSJed Brown { return MatSolverTypeGet(stype,mtype,ftype,foundmtype,foundstype,f); }
1829989ab13SBarry Smith 
1834222ddf1SHong Zhang /*E
1844222ddf1SHong Zhang     MatProductType - indicates what type of matrix product is requested
1854222ddf1SHong Zhang 
1864222ddf1SHong Zhang     Level: beginner
1874222ddf1SHong Zhang 
188db781477SPatrick Sanan .seealso: `MatProductSetType()`
1894222ddf1SHong Zhang E*/
1906718818eSStefano Zampini typedef enum {MATPRODUCT_UNSPECIFIED=0,MATPRODUCT_AB,MATPRODUCT_AtB,MATPRODUCT_ABt,MATPRODUCT_PtAP,MATPRODUCT_RARt,MATPRODUCT_ABC} MatProductType;
191544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[];
1924222ddf1SHong Zhang 
1934222ddf1SHong Zhang /*J
1944222ddf1SHong Zhang     MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation
1954222ddf1SHong Zhang 
1964222ddf1SHong Zhang    Level: beginner
1974222ddf1SHong Zhang 
198db781477SPatrick Sanan .seealso: `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType`
1994222ddf1SHong Zhang J*/
2004222ddf1SHong Zhang typedef const char* MatProductAlgorithm;
2013e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT "default"
2023e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED "sorted"
2033e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE "scalable"
2043e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST "scalable_fast"
2053e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP "heap"
2063e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP "btheap"
2073e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED "llcondensed"
2083e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE "rowmerge"
2093e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT "outerproduct"
2103e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB "at*b"
2113e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP "rap"
2123e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE "nonscalable"
2133e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI "seqmpi"
2143e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND "backend"
2153e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING "overlapping"
2163e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED "merged"
2173e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE "allatonce"
2183e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged"
2193e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV "allgatherv"
2203e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC "cyclic"
2213e662e0bSHong Zhang #if defined(PETSC_HAVE_HYPRE)
2223e662e0bSHong Zhang #define MATPRODUCTALGORITHMHYPRE "hypre"
2233e662e0bSHong Zhang #endif
2244222ddf1SHong Zhang 
2254222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat,Mat,Mat,Mat*);
2264222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat,Mat,Mat,Mat);
2274222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat,MatProductType);
2284222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat,MatProductAlgorithm);
2294222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat,PetscReal);
2304222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat);
2314222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat);
2324222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat);
2334222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat,Mat,Mat,Mat);
2344417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat);
2356718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat,PetscViewer);
236c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat,MatProductType*);
237c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat,Mat*,Mat*,Mat*);
2384222ddf1SHong Zhang 
239c06d978dSMatthew Knepley /* Logging support */
2400700a824SBarry Smith #define    MAT_FILE_CLASSID 1211216    /* used to indicate matrices in binary files */
241014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID;
242335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID;
243014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID;
244014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID;
245014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID;
246014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID;
247014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID;
248014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID;
249c06d978dSMatthew Knepley 
250ceb03754SKris Buschelman /*E
2517dae84e0SHong Zhang     MatReuse - Indicates if matrices obtained from a previous call to MatCreateSubMatrices(), MatCreateSubMatrix(), MatConvert() or several other functions
252cf37664fSBarry Smith      are to be reused to store the new matrix values.
253cf37664fSBarry Smith 
254cf37664fSBarry Smith $  MAT_INITIAL_MATRIX - create a new matrix
255cf37664fSBarry Smith $  MAT_REUSE_MATRIX - reuse the matrix created with a previous call that used MAT_INITIAL_MATRIX
256cf37664fSBarry Smith $  MAT_INPLACE_MATRIX - replace the first input matrix with the new matrix (not applicable to all functions)
257cf37664fSBarry Smith $  MAT_IGNORE_MATRIX - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions)
258ceb03754SKris Buschelman 
259ceb03754SKris Buschelman     Level: beginner
260ceb03754SKris Buschelman 
261af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
262ceb03754SKris Buschelman 
263db781477SPatrick Sanan .seealso: `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()`
264ceb03754SKris Buschelman E*/
265511c6705SHong Zhang typedef enum {MAT_INITIAL_MATRIX,MAT_REUSE_MATRIX,MAT_IGNORE_MATRIX,MAT_INPLACE_MATRIX} MatReuse;
266ceb03754SKris Buschelman 
2675494a064SHong Zhang /*E
2687dae84e0SHong Zhang     MatCreateSubMatrixOption - Indicates if matrices obtained from a call to MatCreateSubMatrices()
269446c23c1SPierre Jolivet      include the matrix values. Currently it is only used by MatGetSeqNonzeroStructure().
2705494a064SHong Zhang 
2715494a064SHong Zhang     Level: beginner
2725494a064SHong Zhang 
273db781477SPatrick Sanan .seealso: `MatGetSeqNonzeroStructure()`
2745494a064SHong Zhang E*/
2757dae84e0SHong Zhang typedef enum {MAT_DO_NOT_GET_VALUES,MAT_GET_VALUES} MatCreateSubMatrixOption;
2765494a064SHong Zhang 
277607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void);
278c06d978dSMatthew Knepley 
279014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm,Mat*);
280014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat,PetscInt,PetscInt,PetscInt,PetscInt);
28119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat,MatType);
2820d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat,VecType*);
2830d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat,VecType);
284014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat);
285fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat,PetscObject,const char[]);
286bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[],PetscErrorCode(*)(Mat));
28723bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[],const char[],const char[]);
288014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat,const char[]);
28926cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat,const char[]);
29026cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat,const char[]);
291014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat,const char[]);
292014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat,const char*[]);
29384d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat,PetscBool);
294f69a0ea3SMatthew Knepley 
295140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList;
296140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList;
297140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList;
29828988994SBarry Smith 
2993b224e63SBarry Smith /*E
300aa6c7ce3SBarry Smith     MatStructure - Indicates if two matrices have the same nonzero structure
3013b224e63SBarry Smith 
3023b224e63SBarry Smith     Level: beginner
3033b224e63SBarry Smith 
304531d0c6aSBarry Smith $  SAME_NONZERO_PATTERN  - the two matrices have identical nonzero patterns
305531d0c6aSBarry Smith $  DIFFERENT_NONZERO_PATTERN - the two matrices may have different nonzero patterns
306531d0c6aSBarry Smith $  SUBSET_NONZERO_PATTERN - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix
307531d0c6aSBarry Smith $  UNKNOWN_NONZERO_PATTERN - there is no known relationship between the nonzero patterns. In this case the implementations may try to detect a relationship to optimize the operation
308531d0c6aSBarry Smith 
309531d0c6aSBarry Smith    Developer Notes:
310d60b7d5cSBarry Smith      Any additions/changes here MUST also be made in src/mat/f90-mod/petscmat.h
3113b224e63SBarry Smith 
312db781477SPatrick Sanan .seealso: `MatCopy()`, `MatAXPY()`, `MatAYPX()`
3133b224e63SBarry Smith E*/
314d60b7d5cSBarry Smith typedef enum {DIFFERENT_NONZERO_PATTERN,SUBSET_NONZERO_PATTERN,SAME_NONZERO_PATTERN,UNKNOWN_NONZERO_PATTERN} MatStructure;
315d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[];
3163b224e63SBarry Smith 
3179779e05dSSatish Balay #if defined PETSC_HAVE_MKL_SPARSE
318ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*);
319ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*);
32080095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*);
321ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*);
32280095d54SIrina Sokolova #endif
323cd929ea3SAlp Dener 
324d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*);
325d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*);
326d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat,PetscInt,const PetscInt[]);
327d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
32880095d54SIrina Sokolova 
329014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm,PetscInt,PetscInt,PetscScalar[],Mat*);
330014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar[],Mat*);
331014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*);
332014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*);
333014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[],Mat*);
3348f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]);
335*6a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat,const PetscScalar []);
336014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],PetscInt[],PetscInt[],PetscScalar[],Mat*);
3373b00a383SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm,Mat,Mat,const PetscInt[],Mat*);
3383b00a383SHong Zhang 
339014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*);
340014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*);
341014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[],Mat*);
3427e8381f9SStefano Zampini 
34382a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat,PetscCount,const PetscInt[],const PetscInt[]);
34482a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat,PetscCount,PetscInt[],PetscInt[]);
3457e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat,const PetscScalar[],InsertMode);
346d21a29f3SJed Brown 
347014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscInt[],Mat*);
348014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*);
349d21a29f3SJed Brown 
350014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*);
351014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[],Mat *);
35238f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]);
353014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]);
3544cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscInt[],const PetscInt[]);
355dfb205c3SBarry Smith 
356014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,void *,Mat*);
357c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm,PetscInt,PetscInt,Mat*);
358014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat,Mat*);
359c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat,Mat*);
360986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat,Mat,Vec,Mat,Mat*);
361267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat,Mat*,Mat*,Vec*,Mat*);
362c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,ISLocalToGlobalMapping,ISLocalToGlobalMapping,Mat*);
363014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*);
364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*);
365c0cdd4a1SDahai Guo 
366014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm,VecScatter,Mat*);
367014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat,VecScatter);
368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat,VecScatter*);
369014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt*,Mat*);
370014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat,Mat);
371014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat);
3728c8613bfSJakub Kruzik typedef enum {MAT_COMPOSITE_MERGE_RIGHT,MAT_COMPOSITE_MERGE_LEFT} MatCompositeMergeType;
3738c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat,MatCompositeMergeType);
374014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm,PetscInt,const Mat*,Mat*);
3756d7c1e57SBarry Smith typedef enum {MAT_COMPOSITE_ADDITIVE,MAT_COMPOSITE_MULTIPLICATIVE} MatCompositeType;
376014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat,MatCompositeType);
3776dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat,MatCompositeType*);
3783b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat,MatStructure);
3793b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat,MatStructure*);
3806d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat,PetscInt*);
3818b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat,PetscInt,Mat*);
38203049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat,const PetscScalar*);
3836d7c1e57SBarry Smith 
38419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm,PetscInt,const PetscInt[],MatType,Mat*);
385014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm,PetscInt,const PetscInt[],Mat*);
386dedccee8SHong Zhang 
387014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat,Mat*);
3888060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat,Mat*);
389d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat,Mat*);
39006511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat,Mat*);
391fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat,Mat*);
39265f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat,Mat*);
39354e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat,IS,IS,Mat*);
39454e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat,Mat,IS,IS);
395014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat,IS,IS,Mat*);
3963423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar,Mat*);
3971472f72bSBarry Smith 
398978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE)
399d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
400978814f1SStefano Zampini #endif
401978814f1SStefano Zampini 
402014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat,const char[]);
4031d6018f0SLisandro Dalcin 
404846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat);
405014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat);
406014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat*);
407e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat,PetscObjectState*);
40821c89e3eSBarry Smith 
409014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat);
410014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat);
411014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat);
412014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat,Mat*);
413014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat,PetscScalar*);
414713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat,const PetscScalar **);
4150da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat,PetscInt,const PetscInt*,PetscScalar*);
416479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat,Mat);
4178a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat,MatReuse,Mat*);
41899cafbc1SBarry Smith 
4198ed539a5SBarry Smith /* ------------------------------------------------------------*/
420014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
4218a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat,IS,IS,const PetscScalar[],InsertMode);
422014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
423014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat,PetscInt,const PetscScalar[]);
424014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat,PetscInt,const PetscScalar[]);
425014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat,PetscInt,PetscInt,PetscInt[],const PetscScalar[]);
42673a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat,PetscRandom);
42784cb2905SBarry Smith 
4282ef4de8bSBarry Smith /*S
4292ef4de8bSBarry Smith      MatStencil - Data structure (C struct) for storing information about a single row or
43062ef0227SBarry Smith         column of a matrix as indexed on an associated grid. These are arguments to MatSetStencil() and MatSetBlockStencil()
43162ef0227SBarry Smith 
43262ef0227SBarry Smith    The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored).
43362ef0227SBarry Smith    The c represents the the degrees of freedom at each grid point (the dof argument to DMDASetDOF()). If dof is 1 then this entry is ignored.
43462ef0227SBarry Smith 
43562ef0227SBarry Smith    For stencil access to vectors see DMDAVecGetArray(), DMDAVecGetArrayF90().
436be479b30SJed Brown 
437be479b30SJed Brown    Fortran usage is different, see MatSetValuesStencil() for details.
4382ef4de8bSBarry Smith 
4392ef4de8bSBarry Smith    Level: beginner
4402ef4de8bSBarry Smith 
441db781477SPatrick Sanan .seealso: `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`
4422ef4de8bSBarry Smith S*/
443435da068SBarry Smith typedef struct {
444c1ac3661SBarry Smith   PetscInt k,j,i,c;
445435da068SBarry Smith } MatStencil;
4462ef4de8bSBarry Smith 
447014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat,PetscInt,const MatStencil[],PetscInt,const MatStencil[],const PetscScalar[],InsertMode);
448014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat,PetscInt,const MatStencil[],PetscInt,const MatStencil[],const PetscScalar[],InsertMode);
449014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat,PetscInt,const PetscInt[],const PetscInt[],PetscInt);
450435da068SBarry Smith 
451d91e6319SBarry Smith /*E
452d91e6319SBarry Smith     MatAssemblyType - Indicates if the matrix is now to be used, or if you plan
45362ef0227SBarry Smith      to continue to add or insert values to it
454d91e6319SBarry Smith 
455d91e6319SBarry Smith     Level: beginner
456d91e6319SBarry Smith 
457db781477SPatrick Sanan .seealso: `MatAssemblyBegin()`, `MatAssemblyEnd()`
458d91e6319SBarry Smith E*/
4596d4a8577SBarry Smith typedef enum {MAT_FLUSH_ASSEMBLY=1,MAT_FINAL_ASSEMBLY=0} MatAssemblyType;
460014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat,MatAssemblyType);
461014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat,MatAssemblyType);
462014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat,PetscBool *);
4634f9c727eSBarry Smith 
464d91e6319SBarry Smith /*E
465d91e6319SBarry Smith     MatOption - Options that may be set for a matrix and its behavior or storage
466d91e6319SBarry Smith 
467d91e6319SBarry Smith     Level: beginner
468d91e6319SBarry Smith 
469af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
4700f8fb01aSBarry Smith    Any additions/changes here must also be made in src/mat/interface/dlregismat.c in MatOptions[]
471d91e6319SBarry Smith 
47295452b02SPatrick Sanan    Developer Notes:
47395452b02SPatrick Sanan     Entries that are negative need not be called collectively by all processes.
474382164b0SBarry Smith 
475db781477SPatrick Sanan .seealso: `MatSetOption()`
476d91e6319SBarry Smith E*/
477c5e4d11fSDmitry Karpeev typedef enum {MAT_OPTION_MIN = -3,
478c5e4d11fSDmitry Karpeev               MAT_UNUSED_NONZERO_LOCATION_ERR = -2,
47992d4d306SBarry Smith               MAT_ROW_ORIENTED = -1,
480382164b0SBarry Smith               MAT_SYMMETRIC = 1,
481382164b0SBarry Smith               MAT_STRUCTURALLY_SYMMETRIC = 2,
4828c78258cSHong Zhang               MAT_FORCE_DIAGONAL_ENTRIES = 3,
483382164b0SBarry Smith               MAT_IGNORE_OFF_PROC_ENTRIES = 4,
484382164b0SBarry Smith               MAT_USE_HASH_TABLE = 5,
485382164b0SBarry Smith               MAT_KEEP_NONZERO_PATTERN = 6,
486382164b0SBarry Smith               MAT_IGNORE_ZERO_ENTRIES = 7,
487382164b0SBarry Smith               MAT_USE_INODES = 8,
488382164b0SBarry Smith               MAT_HERMITIAN = 9,
489382164b0SBarry Smith               MAT_SYMMETRY_ETERNAL = 10,
490c5e4d11fSDmitry Karpeev               MAT_NEW_NONZERO_LOCATION_ERR = 11,
491382164b0SBarry Smith               MAT_IGNORE_LOWER_TRIANGULAR = 12,
492382164b0SBarry Smith               MAT_ERROR_LOWER_TRIANGULAR = 13,
493382164b0SBarry Smith               MAT_GETROW_UPPERTRIANGULAR = 14,
494382164b0SBarry Smith               MAT_SPD = 15,
49592d4d306SBarry Smith               MAT_NO_OFF_PROC_ZERO_ROWS = 16,
49692d4d306SBarry Smith               MAT_NO_OFF_PROC_ENTRIES = 17,
49792d4d306SBarry Smith               MAT_NEW_NONZERO_LOCATIONS = 18,
498c5e4d11fSDmitry Karpeev               MAT_NEW_NONZERO_ALLOCATION_ERR = 19,
499c5e4d11fSDmitry Karpeev               MAT_SUBSET_OFF_PROC_ENTRIES = 20,
500c10200c1SHong Zhang               MAT_SUBMAT_SINGLEIS = 21,
501957cac9fSHong Zhang               MAT_STRUCTURE_ONLY = 22,
502071fcb05SBarry Smith               MAT_SORTED_FULL = 23,
5031a2c6b5cSJunchao Zhang               MAT_FORM_EXPLICIT_TRANSPOSE = 24,
5041a2c6b5cSJunchao Zhang               MAT_OPTION_MAX = 25} MatOption;
505e057df02SPaul Mullowney 
5060f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions;
507014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOption(Mat,MatOption,PetscBool);
5087d68702bSBarry Smith PETSC_EXTERN PetscErrorCode MatGetOption(Mat,MatOption,PetscBool*);
509856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode MatPropagateSymmetryOptions(Mat,Mat);
51019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetType(Mat,MatType*);
51184cb2905SBarry Smith 
512014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetValues(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar[]);
513014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRow(Mat,PetscInt,PetscInt *,const PetscInt *[],const PetscScalar*[]);
514014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRow(Mat,PetscInt,PetscInt *,const PetscInt *[],const PetscScalar*[]);
515014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowUpperTriangular(Mat);
516014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowUpperTriangular(Mat);
517014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnVector(Mat,Vec,PetscInt);
5188c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetArray(Mat,PetscScalar *[]);
5198f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayRead(Mat,const PetscScalar *[]);
520d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayWrite(Mat,PetscScalar *[]);
5218c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArray(Mat,PetscScalar *[]);
5228f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayRead(Mat,const PetscScalar *[]);
523d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayWrite(Mat,PetscScalar *[]);
52421e72a00SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetMaxRowNonzeros(Mat,PetscInt*);
525bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetValuesLocalFast(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
5264099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetType(Mat,MatType);
527ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatSeqAIJKron(Mat,Mat,MatReuse,Mat*);
528388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode MatSeqAIJRegister(const char[],PetscErrorCode (*)(Mat,MatType,MatReuse,Mat *));
5294099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList;
530cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJGetArray(Mat,PetscScalar *[]);
531cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJRestoreArray(Mat,PetscScalar *[]);
5328397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJGetArray(Mat,PetscScalar *[]);
5338397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJRestoreArray(Mat,PetscScalar *[]);
5348c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArray(Mat,PetscScalar *[]);
5358c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArray(Mat,PetscScalar *[]);
536d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDensePlaceArray(Mat,const PetscScalar[]);
537d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseReplaceArray(Mat,const PetscScalar[]);
538d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseResetArray(Mat);
5398572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArrayRead(Mat,const PetscScalar *[]);
5408572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayRead(Mat,const PetscScalar *[]);
5416947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetArrayWrite(Mat,PetscScalar *[]);
5426947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWrite(Mat,PetscScalar *[]);
543014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSize(Mat,PetscInt *);
544014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSize(Mat,PetscInt);
545014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSizes(Mat,PetscInt *,PetscInt *);
546014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizes(Mat,PetscInt,PetscInt);
54733d57670SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizesFromMats(Mat,Mat,Mat);
5480da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetVariableBlockSizes(Mat,PetscInt,PetscInt*);
5490da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetVariableBlockSizes(Mat,PetscInt*,const PetscInt**);
5500da83c2eSBarry Smith 
55186aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat,PetscInt,PetscScalar*[]);
55286aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat,PetscScalar*[]);
5536947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat,PetscInt,Vec*);
5546947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat,PetscInt,Vec*);
5556947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat,PetscInt,Vec*);
5566947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat,PetscInt,Vec*);
5576947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat,PetscInt,Vec*);
5586947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat,PetscInt,Vec*);
559a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat,PetscInt,PetscInt,PetscInt,PetscInt,Mat*);
5605ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat,Mat*);
5611620fd73SBarry Smith 
562014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat,Vec,Vec);
563014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat,Vec,Vec);
564014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat,Vec,Vec,Vec);
565014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat,Vec,Vec);
566014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat,Vec,Vec);
567014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat,Mat,PetscReal,PetscBool *);
568014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat,Mat,PetscReal,PetscBool *);
569014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat,Vec,Vec,Vec);
570014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat,Vec,Vec,Vec);
571014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat,Mat,Mat);
572bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat,Mat,Mat);
573eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat,Mat,Mat);
574f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat,Vec,Vec,Vec);
575f5edf698SHong Zhang 
576d91e6319SBarry Smith /*E
577d91e6319SBarry Smith     MatDuplicateOption - Indicates if a duplicated sparse matrix should have
578d91e6319SBarry Smith   its numerical values copied over or just its nonzero structure.
579d91e6319SBarry Smith 
580d91e6319SBarry Smith     Level: beginner
581d91e6319SBarry Smith 
582af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
583d91e6319SBarry Smith 
5840018da39SRichard Tran Mills $   MAT_DO_NOT_COPY_VALUES    - Create a matrix using the same nonzero pattern as the original matrix,
5850018da39SRichard Tran Mills $                               with zeros for the numerical values.
5860018da39SRichard Tran Mills $   MAT_COPY_VALUES           - Create a matrix with the same nonzero pattern as the original matrix
5870018da39SRichard Tran Mills $                               and with the same numerical values.
5880018da39SRichard Tran Mills $   MAT_SHARE_NONZERO_PATTERN - Create a matrix that shares the nonzero structure with the previous matrix
5890018da39SRichard Tran Mills $                               and does not copy it, using zeros for the numerical values. The parent and
5900018da39SRichard Tran Mills $                               child matrices will share their index (i and j) arrays, and you cannot
5910018da39SRichard Tran Mills $                               insert new nonzero entries into either matrix.
5920018da39SRichard Tran Mills 
59395452b02SPatrick Sanan Notes:
59495452b02SPatrick Sanan     Many matrix types (including SeqAIJ) do not support the MAT_SHARE_NONZERO_PATTERN optimization; in
5950018da39SRichard Tran Mills this case the behavior is as if MAT_DO_NOT_COPY_VALUES has been specified.
59670dcbbb9SBarry Smith 
597db781477SPatrick Sanan .seealso: `MatDuplicate()`
598d91e6319SBarry Smith E*/
59970dcbbb9SBarry Smith typedef enum {MAT_DO_NOT_COPY_VALUES,MAT_COPY_VALUES,MAT_SHARE_NONZERO_PATTERN} MatDuplicateOption;
6002e8a6d31SBarry Smith 
60119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat,MatType,MatReuse,Mat*);
602014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat,MatDuplicateOption,Mat*);
60394a9d846SBarry Smith 
604014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat,Mat,MatStructure);
605014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat,PetscViewer);
606014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat,PetscReal,PetscBool *);
607014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat,PetscBool *);
608014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat,PetscReal,PetscBool *);
609014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat,PetscBool *,PetscBool *);
610014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat,PetscBool *,PetscBool *);
611014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat,PetscBool  *,PetscInt *);
612014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer);
6137b80b807SBarry Smith 
6141a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat,PetscInt,PetscBool ,PetscBool ,PetscInt*,const PetscInt *[],const PetscInt *[],PetscBool  *);
6151a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat,PetscInt,PetscBool ,PetscBool ,PetscInt *,const PetscInt *[],const PetscInt *[],PetscBool  *);
6161a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat,PetscInt,PetscBool ,PetscBool ,PetscInt*,const PetscInt *[],const PetscInt *[],PetscBool  *);
6171a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat,PetscInt,PetscBool ,PetscBool ,PetscInt *,const PetscInt *[],const PetscInt *[],PetscBool  *);
618d4fbbf0eSBarry Smith 
619d91e6319SBarry Smith /*S
620d91e6319SBarry Smith      MatInfo - Context of matrix information, used with MatGetInfo()
621d91e6319SBarry Smith 
622d91e6319SBarry Smith    In Fortran this is simply a double precision array of dimension MAT_INFO_SIZE
623d91e6319SBarry Smith 
624d91e6319SBarry Smith    Level: intermediate
625d91e6319SBarry Smith 
626db781477SPatrick Sanan .seealso: `MatGetInfo()`, `MatInfoType`
627d91e6319SBarry Smith S*/
6284e220ebcSLois Curfman McInnes typedef struct {
629b0a32e0cSBarry Smith   PetscLogDouble block_size;                         /* block size */
630b0a32e0cSBarry Smith   PetscLogDouble nz_allocated,nz_used,nz_unneeded;   /* number of nonzeros */
631b0a32e0cSBarry Smith   PetscLogDouble memory;                             /* memory allocated */
632b0a32e0cSBarry Smith   PetscLogDouble assemblies;                         /* number of matrix assemblies called */
633b0a32e0cSBarry Smith   PetscLogDouble mallocs;                            /* number of mallocs during MatSetValues() */
634b0a32e0cSBarry Smith   PetscLogDouble fill_ratio_given,fill_ratio_needed; /* fill ratio for LU/ILU */
635b0a32e0cSBarry Smith   PetscLogDouble factor_mallocs;                     /* number of mallocs during factorization */
6364e220ebcSLois Curfman McInnes } MatInfo;
6374e220ebcSLois Curfman McInnes 
638d9274352SBarry Smith /*E
639d9274352SBarry Smith     MatInfoType - Indicates if you want information about the local part of the matrix,
640d9274352SBarry Smith      the entire parallel matrix or the maximum over all the local parts.
641d9274352SBarry Smith 
642d9274352SBarry Smith     Level: beginner
643d9274352SBarry Smith 
644af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
645d9274352SBarry Smith 
646db781477SPatrick Sanan .seealso: `MatGetInfo()`, `MatInfo`
647d9274352SBarry Smith E*/
6487b80b807SBarry Smith typedef enum {MAT_LOCAL=1,MAT_GLOBAL_MAX=2,MAT_GLOBAL_SUM=3} MatInfoType;
649014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat,MatInfoType,MatInfo*);
650014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat,Vec);
651014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat,Vec,PetscInt[]);
652014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat,Vec,PetscInt[]);
653014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat,Vec,PetscInt[]);
654014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat,Vec,PetscInt[]);
655014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat,Vec);
656014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat,MatReuse,Mat*);
657014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat,MatReuse,Mat*);
658014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat,IS,IS,Mat*);
659014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat,Vec,Vec);
660014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat,Vec,InsertMode);
661a52676ecSHong Zhang 
662014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat,Mat,PetscBool*);
663014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat,Mat,PetscInt,PetscBool*);
664014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat,Mat,PetscInt,PetscBool*);
665014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat,Mat,PetscInt,PetscBool*);
666014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat,Mat,PetscInt,PetscBool*);
667e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat,Mat,PetscInt,PetscBool*);
668e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat,Mat,PetscInt,PetscBool*);
669a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat,Mat,Mat,PetscInt,PetscBool*);
670a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat,Mat,Mat,PetscInt,PetscBool*);
671cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat,Mat,Mat,PetscInt,PetscBool*);
6724222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat,Mat,Mat,PetscInt,PetscBool*);
673447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat,Mat,Mat,PetscInt,PetscBool*);
67486919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat,PetscInt,PetscBool*);
6757b80b807SBarry Smith 
676014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat,NormType,PetscReal*);
677014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat,NormType,PetscReal*);
678857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat,PetscScalar*);
679857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat,PetscReal*);
680857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat,PetscReal*);
681857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat,PetscScalar*);
682857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat,PetscReal*);
683857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat,PetscReal*);
684857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat,PetscInt,PetscReal*);
685014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat);
6861b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat);
687014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat,PetscInt,const PetscInt [],PetscScalar,Vec,Vec);
688014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat,IS,PetscScalar,Vec,Vec);
689014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat,PetscInt,const MatStencil [],PetscScalar,Vec,Vec);
690014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat,PetscInt,const MatStencil[],PetscScalar,Vec,Vec);
691014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat,PetscInt,const PetscInt [],PetscScalar,Vec,Vec);
692014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat,IS,PetscScalar,Vec,Vec);
6937b80b807SBarry Smith 
694014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat,PetscInt*,PetscInt*);
695014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat,PetscInt*,PetscInt*);
696014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat,PetscInt*,PetscInt*);
697014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat,const PetscInt**);
698014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat,PetscInt*,PetscInt*);
699014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat,const PetscInt**);
700566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat,IS*,IS*);
7015ef9f2a5SBarry Smith 
7027dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]);
7039fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatrices() (since version 3.8)") static inline PetscErrorCode MatGetSubMatrices(Mat mat,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *submat[]) {return MatCreateSubMatrices(mat,n,irow,icol,scall,submat);}
7047dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]);
7059fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatricesMPI() (since version 3.8)") static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *submat[]) {return MatCreateSubMatricesMPI(mat,n,irow,icol,scall,submat);}
706014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt,Mat *[]);
707df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt,Mat *[]);
7087dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat,IS,IS,MatReuse,Mat *);
7099fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatrix() (since version 3.8)") static inline PetscErrorCode MatGetSubMatrix(Mat mat,IS isrow,IS iscol,MatReuse cll,Mat *newmat) {return MatCreateSubMatrix(mat,isrow,iscol,cll,newmat);}
710014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat,IS,IS,Mat*);
711014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat,IS,IS,Mat*);
712014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat,Mat*);
713014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat*);
7147b80b807SBarry Smith 
715014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm,Mat,PetscInt,PetscInt,MatReuse,Mat*);
716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm,Mat,PetscInt,PetscInt,Mat*);
717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat,Mat);
718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat,MatReuse,Mat*);
7198a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat,Mat*);
720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat,MatReuse,IS*,IS*,Mat*);
721ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat,MatReuse,IS*,Mat*);
722014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat,Mat,MatReuse,IS*,IS*,Mat*);
723014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *,const PetscInt *[]);
7248efafbd8SBarry Smith 
725014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat,PetscInt,IS[],PetscInt);
726aa1e27eaSFande Kong PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat,PetscInt n,IS is[],PetscInt ov);
727d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat,PetscBool);
7287b80b807SBarry Smith 
729014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat,Mat,MatReuse,PetscReal,Mat*);
73022440eb1SKris Buschelman 
7317bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat,Mat,Mat,MatReuse,PetscReal,Mat*);
7322df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat,Mat,Mat,MatReuse,PetscReal,Mat*);
7337bab7c10SHong Zhang 
734014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat,Mat,MatReuse,PetscReal,Mat*);
735014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat,Mat,MatReuse,PetscReal,Mat*);
73622440eb1SKris Buschelman 
737014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat,Mat,MatReuse,PetscReal,Mat*);
738014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat,Mat,MatReuse,PetscReal,Mat*);
739bc011b1eSHong Zhang 
740014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat,PetscScalar,Mat,MatStructure);
741014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat,PetscScalar,Mat,MatStructure);
7421c741599SHong Zhang 
743014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat,PetscScalar);
744014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat,PetscScalar);
7457b80b807SBarry Smith 
746014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat,ISLocalToGlobalMapping,ISLocalToGlobalMapping);
747014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat,ISLocalToGlobalMapping*,ISLocalToGlobalMapping*);
748a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat,PetscLayout*,PetscLayout*);
74981fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat,PetscLayout,PetscLayout);
750014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat,PetscInt,const PetscInt [],PetscScalar,Vec,Vec);
751014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat,IS,PetscScalar,Vec,Vec);
752014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat,PetscInt,const PetscInt [],PetscScalar,Vec,Vec);
753014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat,IS,PetscScalar,Vec,Vec);
754e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar[]);
755014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
756014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
757052efed2SBarry Smith 
758014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat,PetscInt,PetscInt);
759014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat,PetscInt*,PetscInt*,PetscInt*,PetscInt*);
76090f02eecSBarry Smith 
761014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat,Vec,Vec);
762014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat,Vec,Vec,Vec);
763014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat,Vec,Vec);
76430b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat,Mat,Mat*);
76530b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat,Mat,Mat,Mat*);
76630b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat,Mat,Mat*);
7672a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat,Vec*,Vec*);
7689fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateVecs() (since version 3.6)") static inline PetscErrorCode MatGetVecs(Mat mat,Vec *x,Vec *y) {return MatCreateVecs(mat,x,y);}
76953cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat,PetscInt,MPI_Comm,MatReuse,Mat*);
770014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat,MPI_Comm,MatReuse,Mat*);
771014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat,IS*);
7723a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat,IS*);
7739c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm,Mat,PetscInt,MatReuse,Mat*);
774bd481603SBarry Smith 
775bd481603SBarry Smith /*MC
7761620fd73SBarry Smith    MatSetValue - Set a single entry into a matrix.
7771620fd73SBarry Smith 
7781620fd73SBarry Smith    Not collective
7791620fd73SBarry Smith 
780a9834a7dSSatish Balay    Synopsis:
781a9834a7dSSatish Balay      #include <petscmat.h>
782a9834a7dSSatish Balay      PetscErrorCode MatSetValue(Mat m,PetscInt row,PetscInt col,PetscScalar value,InsertMode mode)
783a9834a7dSSatish Balay 
7841620fd73SBarry Smith    Input Parameters:
7851620fd73SBarry Smith +  m - the matrix
7861620fd73SBarry Smith .  row - the row location of the entry
7871620fd73SBarry Smith .  col - the column location of the entry
7881620fd73SBarry Smith .  value - the value to insert
7891620fd73SBarry Smith -  mode - either INSERT_VALUES or ADD_VALUES
7901620fd73SBarry Smith 
7911620fd73SBarry Smith    Notes:
792e5e5a7b5SPatrick Sanan    For efficiency one should use MatSetValues() and set several values simultaneously.
7931620fd73SBarry Smith 
7941620fd73SBarry Smith    Level: beginner
7951620fd73SBarry Smith 
796db781477SPatrick Sanan .seealso: `MatGetValue()`, `MatSetValues()`, `MatSetValueLocal()`, `MatSetValuesLocal()`
7971620fd73SBarry Smith M*/
7989fbee547SJacob Faibussowitsch static inline PetscErrorCode MatSetValue(Mat v,PetscInt i,PetscInt j,PetscScalar va,InsertMode mode) {return MatSetValues(v,1,&i,1,&j,&va,mode);}
7991620fd73SBarry Smith 
800e5e5a7b5SPatrick Sanan /*@C
801e5e5a7b5SPatrick Sanan    MatGetValue - Gets a single value from a matrix
8021620fd73SBarry Smith 
803e5e5a7b5SPatrick Sanan    Not Collective; can only return a value owned by the given process
804e5e5a7b5SPatrick Sanan 
805e5e5a7b5SPatrick Sanan    Input Parameters:
806e5e5a7b5SPatrick Sanan +  mat - the matrix
807e5e5a7b5SPatrick Sanan .  row - the row location of the entry
808e5e5a7b5SPatrick Sanan -  col - the column location of the entry
809e5e5a7b5SPatrick Sanan 
810e5e5a7b5SPatrick Sanan    Output Parameter:
811e5e5a7b5SPatrick Sanan .  va - the value
812e5e5a7b5SPatrick Sanan 
813e5e5a7b5SPatrick Sanan    Notes:
814e5e5a7b5SPatrick Sanan    For efficiency one should use MatGetValues() and get several values simultaneously.
815e5e5a7b5SPatrick Sanan 
816e5e5a7b5SPatrick Sanan    See notes for MatGetValues().
817e5e5a7b5SPatrick Sanan 
818e5e5a7b5SPatrick Sanan    Level: advanced
819e5e5a7b5SPatrick Sanan 
820db781477SPatrick Sanan .seealso: `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()`
821e5e5a7b5SPatrick Sanan @*/
8229fbee547SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat,PetscInt row,PetscInt col,PetscScalar *va) {return MatGetValues(mat,1,&row,1,&col,va);}
823e5e5a7b5SPatrick Sanan 
824e5e5a7b5SPatrick Sanan /*MC
825e5e5a7b5SPatrick Sanan    MatSetValueLocal - Inserts or adds a single value into a matrix,
826e5e5a7b5SPatrick Sanan    using a local numbering of the nodes.
827e5e5a7b5SPatrick Sanan 
828e5e5a7b5SPatrick Sanan    Not Collective
829e5e5a7b5SPatrick Sanan 
830e5e5a7b5SPatrick Sanan    Input Parameters:
831e5e5a7b5SPatrick Sanan +  m - the matrix
832e5e5a7b5SPatrick Sanan .  row - the row location of the entry
833e5e5a7b5SPatrick Sanan .  col - the column location of the entry
834e5e5a7b5SPatrick Sanan .  value - the value to insert
835e5e5a7b5SPatrick Sanan -  mode - either INSERT_VALUES or ADD_VALUES
836e5e5a7b5SPatrick Sanan 
837e5e5a7b5SPatrick Sanan    Notes:
838e5e5a7b5SPatrick Sanan    For efficiency one should use MatSetValuesLocal() and set several values simultaneously.
839e5e5a7b5SPatrick Sanan 
840e5e5a7b5SPatrick Sanan    See notes for MatSetValuesLocal() for additional information on when and how this function can be used.
841e5e5a7b5SPatrick Sanan 
842e5e5a7b5SPatrick Sanan    Level: intermediate
843e5e5a7b5SPatrick Sanan 
844db781477SPatrick Sanan .seealso: `MatSetValue()`, `MatSetValuesLocal()`
845e5e5a7b5SPatrick Sanan M*/
8469fbee547SJacob Faibussowitsch static inline PetscErrorCode MatSetValueLocal(Mat v,PetscInt i,PetscInt j,PetscScalar va,InsertMode mode) {return MatSetValuesLocal(v,1,&i,1,&j,&va,mode);}
8471620fd73SBarry Smith 
8481620fd73SBarry Smith /*MC
849d0609cedSBarry Smith    MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per
850bd481603SBarry Smith        row in a matrix providing the data that one can use to correctly preallocate the matrix.
851bd481603SBarry Smith 
852bd481603SBarry Smith    Synopsis:
853aaa7dc30SBarry Smith    #include <petscmat.h>
854d0609cedSBarry Smith    PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz)
855bd481603SBarry Smith 
856d083f849SBarry Smith    Collective
857bd481603SBarry Smith 
858bd481603SBarry Smith    Input Parameters:
859bd481603SBarry Smith +  comm - the communicator that will share the eventually allocated matrix
860859fcb39SBarry Smith .  nrows - the number of LOCAL rows in the matrix
861859fcb39SBarry Smith -  ncols - the number of LOCAL columns in the matrix
862bd481603SBarry Smith 
863bd481603SBarry Smith    Output Parameters:
864bd481603SBarry Smith +  dnz - the array that will be passed to the matrix preallocation routines
865a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
866bd481603SBarry Smith 
867bd481603SBarry Smith    Level: intermediate
868bd481603SBarry Smith 
869bd481603SBarry Smith    Notes:
870d0609cedSBarry Smith     This is a macro that handles its own error checking, it does not return an error code.
871d0609cedSBarry Smith 
872a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
873bd481603SBarry Smith 
8741d73ed98SBarry Smith     Do not malloc or free dnz and onz, that is handled internally by these routines
875bd481603SBarry Smith 
876d0609cedSBarry Smith    Developer Notes:
8771620fd73SBarry Smith     This is a MACRO not a function because it has a leading { that is closed by PetscPreallocateFinalize().
8781620fd73SBarry Smith 
879db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
880db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
881bd481603SBarry Smith M*/
882d0609cedSBarry Smith #define MatPreallocateBegin(comm,nrows,ncols,dnz,onz)  do {                             \
8835f80ce2aSJacob Faibussowitsch   PetscInt __nrows = (nrows),__ncols = (ncols),__rstart,__start,__end = 0;                     \
8849566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(__nrows,&(dnz),__nrows,&(onz)));                                        \
8859566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Scan(&__ncols,&__end,1,MPIU_INT,MPI_SUM,comm));                                \
8865f80ce2aSJacob Faibussowitsch   __start = __end - __ncols; (void)__start;                                                    \
8879566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Scan(&__nrows,&__rstart,1,MPIU_INT,MPI_SUM,comm));                             \
8885f80ce2aSJacob Faibussowitsch   __rstart -= __nrows
8897c922b88SBarry Smith 
890d0609cedSBarry Smith #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO("GCC warning \"Use MatPreallocateBegin() (since version 3.18)\"") MatPreallocateBegin(__VA_ARGS__)
891d0609cedSBarry Smith 
892bd481603SBarry Smith /*MC
893bd481603SBarry Smith    MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be
894bd481603SBarry Smith        inserted using a local number of the rows and columns
895bd481603SBarry Smith 
896bd481603SBarry Smith    Synopsis:
897aaa7dc30SBarry Smith    #include <petscmat.h>
898c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
899bd481603SBarry Smith 
900bd481603SBarry Smith    Not Collective
901bd481603SBarry Smith 
902bd481603SBarry Smith    Input Parameters:
903784ac674SJed Brown +  map - the row mapping from local numbering to global numbering
904bd481603SBarry Smith .  nrows - the number of rows indicated
9051d73ed98SBarry Smith .  rows - the indices of the rows
906784ac674SJed Brown .  cmap - the column mapping from local to global numbering
907bd481603SBarry Smith .  ncols - the number of columns in the matrix
908bd481603SBarry Smith .  cols - the columns indicated
909bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
910a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
911bd481603SBarry Smith 
912bd481603SBarry Smith    Level: intermediate
913bd481603SBarry Smith 
914bd481603SBarry Smith    Notes:
915a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
916bd481603SBarry Smith 
9171d73ed98SBarry Smith    Do not malloc or free dnz and onz, that is handled internally by these routines
918bd481603SBarry Smith 
919db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
920db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()`
921bd481603SBarry Smith M*/
92294bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap,nrows,rows,cmap,ncols,cols,dnz,onz)                        \
92394bad497SJacob Faibussowitsch   PetscMacroReturnStandard(                                                                    \
9249566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingApply(rmap,nrows,rows,rows));                                \
9259566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingApply(cmap,ncols,cols,cols));                                \
9269566063dSJacob Faibussowitsch     for (PetscInt __l=0;__l<nrows;__l++) PetscCall(MatPreallocateSet((rows)[__l],ncols,cols,dnz,onz)); \
92794bad497SJacob Faibussowitsch   )
928c4f061fbSSatish Balay 
929bd481603SBarry Smith /*MC
930c1154cd5SBarry Smith    MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be
931c1154cd5SBarry Smith        inserted using a local number of the rows and columns. This version removes any duplicate columns in cols
932c1154cd5SBarry Smith 
933c1154cd5SBarry Smith    Synopsis:
934c1154cd5SBarry Smith    #include <petscmat.h>
935c1154cd5SBarry Smith    PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
936c1154cd5SBarry Smith 
937c1154cd5SBarry Smith    Not Collective
938c1154cd5SBarry Smith 
939c1154cd5SBarry Smith    Input Parameters:
940c1154cd5SBarry Smith +  map - the row mapping from local numbering to global numbering
941c1154cd5SBarry Smith .  nrows - the number of rows indicated
942c1154cd5SBarry Smith .  rows - the indices of the rows (these values are mapped to the global values)
943c1154cd5SBarry Smith .  cmap - the column mapping from local to global numbering
944c1154cd5SBarry Smith .  ncols - the number of columns in the matrix   (this value will be changed if duplicate columns are found)
945c1154cd5SBarry Smith .  cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed)
946c1154cd5SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
947a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
948c1154cd5SBarry Smith 
949c1154cd5SBarry Smith    Level: intermediate
950c1154cd5SBarry Smith 
951c1154cd5SBarry Smith    Notes:
952c1154cd5SBarry Smith     See Users-Manual: ch_performance for more details.
953c1154cd5SBarry Smith 
954c1154cd5SBarry Smith    Do not malloc or free dnz and onz, that is handled internally by these routines
955c1154cd5SBarry Smith 
956db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
957db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
958c1154cd5SBarry Smith M*/
95994bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap,nrows,rows,cmap,ncols,cols,dnz,onz)              \
96094bad497SJacob Faibussowitsch   PetscMacroReturnStandard(                                                                    \
9619566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingApply(rmap,nrows,rows,rows));                                \
9629566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingApply(cmap,ncols,cols,cols));                                \
9639566063dSJacob Faibussowitsch     PetscCall(PetscSortRemoveDupsInt(&ncols,cols));                                              \
9649566063dSJacob Faibussowitsch     for (PetscInt __l=0;__l<nrows;__l++) PetscCall(MatPreallocateSet((rows)[__l],ncols,cols,dnz,onz)); \
96594bad497SJacob Faibussowitsch   )
966c1154cd5SBarry Smith 
967c1154cd5SBarry Smith /*MC
968d6e23781SBarry Smith    MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
969bd481603SBarry Smith        inserted using a local number of the rows and columns
970bd481603SBarry Smith 
971bd481603SBarry Smith    Synopsis:
972aaa7dc30SBarry Smith    #include <petscmat.h>
973d6e23781SBarry Smith    PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
974d6e23781SBarry Smith 
975d6e23781SBarry Smith    Not Collective
976d6e23781SBarry Smith 
977d6e23781SBarry Smith    Input Parameters:
978d6e23781SBarry Smith +  map - the row mapping from local numbering to global numbering
979d6e23781SBarry Smith .  nrows - the number of rows indicated
980d6e23781SBarry Smith .  rows - the indices of the rows
981d6e23781SBarry Smith .  cmap - the column mapping from local to global numbering
982d6e23781SBarry Smith .  ncols - the number of columns in the matrix
983d6e23781SBarry Smith .  cols - the columns indicated
984d6e23781SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
985a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
986d6e23781SBarry Smith 
987d6e23781SBarry Smith    Level: intermediate
988d6e23781SBarry Smith 
989d6e23781SBarry Smith    Notes:
990d6e23781SBarry Smith     See Users-Manual: ch_performance for more details.
991d6e23781SBarry Smith 
992d6e23781SBarry Smith    Do not malloc or free dnz and onz, that is handled internally by these routines
993d6e23781SBarry Smith 
994db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
995db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`
996d6e23781SBarry Smith M*/
99794bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap,nrows,rows,cmap,ncols,cols,dnz,onz)                   \
99894bad497SJacob Faibussowitsch   PetscMacroReturnStandard(                                                                    \
9999566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingApplyBlock(rmap,nrows,rows,rows));                           \
10009566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingApplyBlock(cmap,ncols,cols,cols));                           \
10019566063dSJacob Faibussowitsch     for (PetscInt __l=0;__l<nrows;__l++) PetscCall(MatPreallocateSet((rows)[__l],ncols,cols,dnz,onz)); \
100294bad497SJacob Faibussowitsch   )
1003d6e23781SBarry Smith 
1004d6e23781SBarry Smith /*MC
1005d6e23781SBarry Smith    MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1006d6e23781SBarry Smith        inserted using a local number of the rows and columns
1007d6e23781SBarry Smith 
1008d6e23781SBarry Smith    Synopsis:
1009d6e23781SBarry Smith    #include <petscmat.h>
1010d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1011bd481603SBarry Smith 
1012bd481603SBarry Smith    Not Collective
1013bd481603SBarry Smith 
1014bd481603SBarry Smith    Input Parameters:
1015bd481603SBarry Smith +  map - the mapping between local numbering and global numbering
1016bd481603SBarry Smith .  nrows - the number of rows indicated
10171d73ed98SBarry Smith .  rows - the indices of the rows
1018bd481603SBarry Smith .  ncols - the number of columns in the matrix
1019bd481603SBarry Smith .  cols - the columns indicated
1020bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1021a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1022bd481603SBarry Smith 
1023bd481603SBarry Smith    Level: intermediate
1024bd481603SBarry Smith 
1025bd481603SBarry Smith    Notes:
1026a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
1027bd481603SBarry Smith 
1028bd481603SBarry Smith    Do not malloc or free dnz and onz that is handled internally by these routines
1029bd481603SBarry Smith 
1030db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`
1031db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1032bd481603SBarry Smith M*/
103394bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map,nrows,rows,ncols,cols,dnz,onz)                \
103494bad497SJacob Faibussowitsch   PetscMacroReturnStandard(                                                                    \
10359566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingApplyBlock(map,nrows,rows,rows));                            \
10369566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingApplyBlock(map,ncols,cols,cols));                            \
10379566063dSJacob Faibussowitsch     for (PetscInt __l=0;__l<nrows;__l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l],ncols,cols,dnz,onz)); \
103894bad497SJacob Faibussowitsch   )
1039e83a5d19SLisandro Dalcin 
1040bd481603SBarry Smith /*MC
1041bd481603SBarry Smith    MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1042bd481603SBarry Smith        inserted using a local number of the rows and columns
1043bd481603SBarry Smith 
1044bd481603SBarry Smith    Synopsis:
1045aaa7dc30SBarry Smith    #include <petscmat.h>
1046c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1047bd481603SBarry Smith 
1048bd481603SBarry Smith    Not Collective
1049bd481603SBarry Smith 
1050bd481603SBarry Smith    Input Parameters:
105164075487SBarry Smith +  row - the row
1052bd481603SBarry Smith .  ncols - the number of columns in the matrix
1053a50f8bf6SHong Zhang -  cols - the columns indicated
1054a50f8bf6SHong Zhang 
1055a50f8bf6SHong Zhang    Output Parameters:
1056a50f8bf6SHong Zhang +  dnz - the array that will be passed to the matrix preallocation routines
1057a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1058bd481603SBarry Smith 
1059bd481603SBarry Smith    Level: intermediate
1060bd481603SBarry Smith 
1061bd481603SBarry Smith    Notes:
1062a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
1063bd481603SBarry Smith 
1064bd481603SBarry Smith    Do not malloc or free dnz and onz that is handled internally by these routines
1065bd481603SBarry Smith 
1066d0609cedSBarry Smith    This is a MACRO not a function because it uses variables declared in MatPreallocateBegin().
10671620fd73SBarry Smith 
1068db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1069db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1070bd481603SBarry Smith M*/
107194bad497SJacob Faibussowitsch #define MatPreallocateSet(row,nc,cols,dnz,onz) PetscMacroReturnStandard(                       \
10722c71b3e2SJacob Faibussowitsch     PetscCheck(row >= __rstart,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT,row,__rstart); \
10732c71b3e2SJacob Faibussowitsch     PetscCheck(row < __rstart+__nrows,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT,row,__rstart+__nrows-1); \
10745f80ce2aSJacob Faibussowitsch     for (PetscInt __i = 0; __i < nc; ++__i) {                                                  \
107564075487SBarry Smith       if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++;                \
1076a6042fd4SStefano Zampini       else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++;                           \
10777c922b88SBarry Smith     }                                                                                          \
107894bad497SJacob Faibussowitsch   )
10797c922b88SBarry Smith 
1080bd481603SBarry Smith /*MC
1081d6e23781SBarry Smith    MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1082bd481603SBarry Smith        inserted using a local number of the rows and columns
1083bd481603SBarry Smith 
1084bd481603SBarry Smith    Synopsis:
1085aaa7dc30SBarry Smith    #include <petscmat.h>
1086d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1087bd481603SBarry Smith 
1088bd481603SBarry Smith    Not Collective
1089bd481603SBarry Smith 
1090bd481603SBarry Smith    Input Parameters:
1091bd481603SBarry Smith +  nrows - the number of rows indicated
10921d73ed98SBarry Smith .  rows - the indices of the rows
1093bd481603SBarry Smith .  ncols - the number of columns in the matrix
1094bd481603SBarry Smith .  cols - the columns indicated
1095bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1096a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1097bd481603SBarry Smith 
1098bd481603SBarry Smith    Level: intermediate
1099bd481603SBarry Smith 
1100bd481603SBarry Smith    Notes:
1101a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
1102bd481603SBarry Smith 
1103bd481603SBarry Smith    Do not malloc or free dnz and onz that is handled internally by these routines
1104bd481603SBarry Smith 
1105d0609cedSBarry Smith    This is a MACRO not a function because it uses variables declared in MatPreallocateBegin().
11061620fd73SBarry Smith 
1107db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`,
1108db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1109bd481603SBarry Smith M*/
111094bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row,nc,cols,dnz,onz)                                   \
111194bad497SJacob Faibussowitsch   PetscMacroReturnStandard(                                                                    \
11125f80ce2aSJacob Faibussowitsch     for (PetscInt __i=0; __i<nc; __i++) {                                                      \
1113d3d32019SBarry Smith       if (cols[__i] >= __end) onz[row - __rstart]++;                                           \
1114a6042fd4SStefano Zampini       else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++;       \
1115d3d32019SBarry Smith     }                                                                                          \
111694bad497SJacob Faibussowitsch   )
1117d3d32019SBarry Smith 
1118bd481603SBarry Smith /*MC
1119a6042fd4SStefano Zampini    MatPreallocateLocation -  An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists
112016371a99SBarry Smith 
112116371a99SBarry Smith    Synopsis:
1122aaa7dc30SBarry Smith    #include <petscmat.h>
112316371a99SBarry Smith    PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz)
112416371a99SBarry Smith 
112516371a99SBarry Smith    Not Collective
112616371a99SBarry Smith 
112716371a99SBarry Smith    Input Parameters:
1128a2b725a8SWilliam Gropp +  A - matrix
112916371a99SBarry Smith .  row - row where values exist (must be local to this process)
113016371a99SBarry Smith .  ncols - number of columns
113116371a99SBarry Smith .  cols - columns with nonzeros
113216371a99SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1133a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
113416371a99SBarry Smith 
113516371a99SBarry Smith    Level: intermediate
113616371a99SBarry Smith 
113716371a99SBarry Smith    Notes:
1138a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
113916371a99SBarry Smith 
114016371a99SBarry Smith    Do not malloc or free dnz and onz that is handled internally by these routines
114116371a99SBarry Smith 
114216371a99SBarry Smith    This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines.
114316371a99SBarry Smith 
1144db781477SPatrick Sanan .seealso: `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1145db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
114616371a99SBarry Smith M*/
1147d0609cedSBarry Smith #define MatPreallocateLocation(A,row,ncols,cols,dnz,onz)  (A ? MatSetValues(A,1,&row,ncols,cols,NULL,INSERT_VALUES) : MatPreallocateSet(row,ncols,cols,dnz,onz))
114816371a99SBarry Smith 
114916371a99SBarry Smith /*MC
1150d0609cedSBarry Smith    MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per
1151bd481603SBarry Smith        row in a matrix providing the data that one can use to correctly preallocate the matrix.
1152bd481603SBarry Smith 
1153bd481603SBarry Smith    Synopsis:
1154aaa7dc30SBarry Smith    #include <petscmat.h>
1155d0609cedSBarry Smith    PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz)
1156bd481603SBarry Smith 
1157d083f849SBarry Smith    Collective
1158bd481603SBarry Smith 
1159bd481603SBarry Smith    Input Parameters:
116016371a99SBarry Smith +  dnz - the array that was be passed to the matrix preallocation routines
1161a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1162bd481603SBarry Smith 
1163bd481603SBarry Smith    Level: intermediate
1164bd481603SBarry Smith 
1165bd481603SBarry Smith    Notes:
1166d0609cedSBarry Smith     This is a macro that handles its own error checking, it does not return an error code.
1167d0609cedSBarry Smith 
1168a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
1169bd481603SBarry Smith 
1170d0609cedSBarry Smith     Do not malloc or free dnz and onz, that is handled internally by these routines
1171bd481603SBarry Smith 
1172d0609cedSBarry Smith    Developer Notes:
1173d0609cedSBarry Smith     This is a MACRO not a function because it closes the { started in MatPreallocateBegin().
11741620fd73SBarry Smith 
1175db781477SPatrick Sanan .seealso: `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1176db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1177bd481603SBarry Smith M*/
1178d0609cedSBarry Smith #define MatPreallocateEnd(dnz,onz) PetscCall(PetscFree2(dnz,onz));} while (0)
1179d0609cedSBarry Smith 
1180d0609cedSBarry Smith #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO("GCC warning \"Use MatPreallocateEnd() (since version 3.18)\"") MatPreallocateEnd(__VA_ARGS__)
11817c922b88SBarry Smith 
11827b80b807SBarry Smith /* Routines unique to particular data structures */
1183014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat,void *);
1184698d4c6aSKris Buschelman 
1185014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat,IS*,IS*);
1186014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat,PetscInt *,PetscInt *[],PetscInt *);
1187698d4c6aSKris Buschelman 
1188014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat,PetscInt[]);
1189014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat,PetscInt[]);
1190014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*);
1191014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*);
1192014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*);
1193014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*,PetscInt,PetscBool);
11947b80b807SBarry Smith 
1195a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4
1196a96a251dSBarry Smith 
1197014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[]);
1198014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[]);
1199014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat,PetscInt,const PetscInt[]);
120019b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat,PetscInt);
1201273d9f13SBarry Smith 
1202014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1203014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1204014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
1205014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat,const PetscInt [],const PetscInt [],const PetscScalar []);
1206014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]);
1207014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat,const PetscInt[],const PetscInt[],const PetscScalar[]);
1208014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]);
1209014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat,PetscInt[],PetscInt[],PetscInt[]);
1210b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat,Mat*);
1211014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat,PetscScalar[]);
1212014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat,PetscScalar[]);
12139230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat,Mat*,Mat*,const PetscInt*[]);
12149230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat,Mat*,Mat*,const PetscInt*[]);
1215014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat,Mat*);
1216273d9f13SBarry Smith 
121749a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat,PetscInt*);
1218ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat,PetscInt);
12199fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatDenseSetLDA() (since version 3.14)") static inline PetscErrorCode MatSeqDenseSetLDA(Mat A,PetscInt lda) {return MatDenseSetLDA(A,lda);}
1220014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat,Mat*);
12211b807ce4Svictorle 
1222621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[]);
1223621e819fSSatish Balay 
1224014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat);
1225014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat);
12262e8a6d31SBarry Smith 
1227014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat,IS*);
12287cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat,IS*);
12297b80b807SBarry Smith /*
12307b80b807SBarry Smith   These routines are not usually accessed directly, rather solving is
123194b7f48cSBarry Smith   done through the KSP and PC interfaces.
12327b80b807SBarry Smith */
12337b80b807SBarry Smith 
123476bdecfbSBarry Smith /*J
12358f6c3df8SBarry Smith     MatOrderingType - String with the name of a PETSc matrix ordering
1236d9274352SBarry Smith 
1237d9274352SBarry Smith    Level: beginner
1238d9274352SBarry Smith 
12392c7c0729SBarry Smith    Notes:
12402c7c0729SBarry Smith       If MATORDERINGEXTERNAL is used then PETSc does not compute an ordering and utilizes one built into the factorization package
12412c7c0729SBarry Smith 
1242db781477SPatrick Sanan .seealso: `MatGetOrdering()`
124376bdecfbSBarry Smith J*/
124419fd82e9SBarry Smith typedef const char* MatOrderingType;
12452692d6eeSBarry Smith #define MATORDERINGNATURAL        "natural"
12462692d6eeSBarry Smith #define MATORDERINGND             "nd"
12472692d6eeSBarry Smith #define MATORDERING1WD            "1wd"
12482692d6eeSBarry Smith #define MATORDERINGRCM            "rcm"
12492692d6eeSBarry Smith #define MATORDERINGQMD            "qmd"
12502692d6eeSBarry Smith #define MATORDERINGROWLENGTH      "rowlength"
1251510184a7SJed Brown #define MATORDERINGWBM            "wbm"
1252fc1bef75SJed Brown #define MATORDERINGSPECTRAL       "spectral"
1253312e372aSBarry Smith #define MATORDERINGAMD            "amd"            /* only works if UMFPACK is installed with PETSc */
1254048412efSPablo Brubeck #define MATORDERINGMETISND        "metisnd"        /* only works if METIS is installed with PETSc */
12559bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND  "natural_or_nd"  /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */
12562c7c0729SBarry Smith #define MATORDERINGEXTERNAL       "external"       /* uses an ordering type internal to the factorization package */
1257b12f92e5SBarry Smith 
125819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrdering(Mat,MatOrderingType,IS*,IS*);
1259140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrderingList(PetscFunctionList*);
1260bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatOrderingRegister(const char[],PetscErrorCode(*)(Mat,MatOrderingType,IS*,IS*));
1261140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList;
1262d4fbbf0eSBarry Smith 
1263014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat,PetscReal,IS,IS);
1264fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat,PetscReal,PetscBool,Mat*);
1265a2ce50c7SBarry Smith 
12664ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat,MatFactorType,MatOrderingType*);
12674ac6704cSBarry Smith 
1268d91e6319SBarry Smith /*S
1269ec5066bdSBarry Smith     MatFactorShiftType - Numeric Shift for factorizations
1270d90ac83dSHong Zhang 
1271d90ac83dSHong Zhang    Level: beginner
1272d90ac83dSHong Zhang 
1273db781477SPatrick Sanan .seealso: `MatGetFactor()`
1274d90ac83dSHong Zhang S*/
1275d90ac83dSHong Zhang typedef enum {MAT_SHIFT_NONE,MAT_SHIFT_NONZERO,MAT_SHIFT_POSITIVE_DEFINITE,MAT_SHIFT_INBLOCKS} MatFactorShiftType;
12766a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[];
12775e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[];
1278d90ac83dSHong Zhang 
1279d90ac83dSHong Zhang /*S
1280ec5066bdSBarry Smith     MatFactorError - indicates what type of error was generated in a matrix factorization
12819aa7eafdSHong Zhang 
12829aa7eafdSHong Zhang     Level: beginner
12839aa7eafdSHong Zhang 
128495452b02SPatrick Sanan     Developer Notes:
128595452b02SPatrick Sanan     Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
128600e125f8SBarry Smith 
1287db781477SPatrick Sanan .seealso: `MatGetFactor()`
12889aa7eafdSHong Zhang S*/
12895cd7cf9dSHong Zhang typedef enum {MAT_FACTOR_NOERROR,MAT_FACTOR_STRUCT_ZEROPIVOT,MAT_FACTOR_NUMERIC_ZEROPIVOT,MAT_FACTOR_OUTMEMORY,MAT_FACTOR_OTHER} MatFactorError;
12909aa7eafdSHong Zhang 
129100e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat,MatFactorError*);
1292b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat);
12937b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat,PetscReal*,PetscInt*);
129400e125f8SBarry Smith 
12959aa7eafdSHong Zhang /*S
1296422a814eSBarry Smith    MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization
1297b00f7748SHong Zhang 
129861cad860SBarry Smith    In Fortran these are simply double precision arrays of size MAT_FACTORINFO_SIZE, that is use
129961cad860SBarry Smith $     MatFactorInfo  info(MAT_FACTORINFO_SIZE)
1300b00f7748SHong Zhang 
130195452b02SPatrick Sanan    Notes:
130295452b02SPatrick Sanan     These are not usually directly used by users, instead use PC type of LU, ILU, CHOLESKY or ICC.
1303b00f7748SHong Zhang 
130461cad860SBarry Smith       You can use MatFactorInfoInitialize() to set default values.
130561cad860SBarry Smith 
1306b00f7748SHong Zhang    Level: developer
1307b00f7748SHong Zhang 
1308db781477SPatrick Sanan .seealso: `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, `MatICCFactorSymbolic()`, `MatICCFactor()`,
1309db781477SPatrick Sanan           `MatFactorInfoInitialize()`
1310b00f7748SHong Zhang 
1311b00f7748SHong Zhang S*/
1312b00f7748SHong Zhang typedef struct {
131315e8a5b3SHong Zhang   PetscReal     diagonal_fill;  /* force diagonal to fill in if initially not filled */
131485317021SBarry Smith   PetscReal     usedt;
131515e8a5b3SHong Zhang   PetscReal     dt;             /* drop tolerance */
1316b00f7748SHong Zhang   PetscReal     dtcol;          /* tolerance for pivoting */
131715e8a5b3SHong Zhang   PetscReal     dtcount;        /* maximum nonzeros to be allowed per row */
131867e28bfeSBarry Smith   PetscReal     fill;           /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */
1319348344bbSBarry Smith   PetscReal     levels;         /* ICC/ILU(levels) */
1320bcd9e38bSBarry Smith   PetscReal     pivotinblocks;  /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0
1321bcd9e38bSBarry Smith                                    factorization may be faster if do not pivot */
132215e8a5b3SHong Zhang   PetscReal     zeropivot;      /* pivot is called zero if less than this */
1323f4db908eSBarry Smith   PetscReal     shifttype;      /* type of shift added to matrix factor to prevent zero pivots */
1324f4db908eSBarry Smith   PetscReal     shiftamount;     /* how large the shift is */
132515e8a5b3SHong Zhang } MatFactorInfo;
1326ffa6d0a5SLois Curfman McInnes 
1327014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo*);
13289a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat,IS,const MatFactorInfo*);
13299a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat,Mat,IS,const MatFactorInfo*);
13309a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat,Mat,const MatFactorInfo*);
13319a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat,IS,IS,const MatFactorInfo*);
13329a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat,IS,IS,const MatFactorInfo*);
13339a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat,Mat,IS,IS,const MatFactorInfo*);
13349a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat,Mat,IS,IS,const MatFactorInfo*);
13359a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat,Mat,IS,const MatFactorInfo*);
13369a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat,IS,const MatFactorInfo*);
13379a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat,Mat,const MatFactorInfo*);
13383f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat,IS,const MatFactorInfo*);
13393f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat,Mat,IS,const MatFactorInfo*);
13403f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat,Mat,const MatFactorInfo*);
1341014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat,PetscInt*,PetscInt*,PetscInt*);
1342014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat,Vec,Vec);
1343014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat,Vec,Vec);
1344014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat,Vec,Vec);
1345014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat,Vec,Vec,Vec);
1346014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat,Vec,Vec);
1347014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat,Vec,Vec,Vec);
1348014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat,Vecs,Vecs);
13497c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat);
13507c2f51b8SStefano Zampini 
13517c2f51b8SStefano Zampini typedef enum {MAT_FACTOR_SCHUR_UNFACTORED, MAT_FACTOR_SCHUR_FACTORED, MAT_FACTOR_SCHUR_INVERTED} MatFactorSchurStatus;
13528e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat,IS);
13537c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat,Mat*,MatFactorSchurStatus*);
13547c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat,Mat*,MatFactorSchurStatus);
13555a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat);
13567c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat,Mat*,MatFactorSchurStatus*);
13575a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat,Vec,Vec);
13585a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat,Vec,Vec);
13596dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat);
1360bb5a7306SBarry Smith 
13618a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat);
1362d91e6319SBarry Smith /*E
1363d91e6319SBarry Smith     MatSORType - What type of (S)SOR to perform
1364bb1eb677SSatish Balay 
1365d91e6319SBarry Smith     Level: beginner
1366d91e6319SBarry Smith 
1367d9274352SBarry Smith    May be bitwise ORd together
1368d9274352SBarry Smith 
1369af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
1370d91e6319SBarry Smith 
13714e7234bfSBarry Smith    MatSORType may be bitwise ORd together, so do not change the numbers
13724e7234bfSBarry Smith 
1373db781477SPatrick Sanan .seealso: `MatSOR()`
1374d91e6319SBarry Smith E*/
1375ee50ffe9SBarry Smith typedef enum {SOR_FORWARD_SWEEP=1,SOR_BACKWARD_SWEEP=2,SOR_SYMMETRIC_SWEEP=3,
1376ee50ffe9SBarry Smith               SOR_LOCAL_FORWARD_SWEEP=4,SOR_LOCAL_BACKWARD_SWEEP=8,
1377ee50ffe9SBarry Smith               SOR_LOCAL_SYMMETRIC_SWEEP=12,SOR_ZERO_INITIAL_GUESS=16,
137884cb2905SBarry Smith               SOR_EISENSTAT=32,SOR_APPLY_UPPER=64,SOR_APPLY_LOWER=128} MatSORType;
1379014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
13808ed539a5SBarry Smith 
1381d4fbbf0eSBarry Smith /*
1382639f9d9dSBarry Smith     These routines are for efficiently computing Jacobians via finite differences.
1383639f9d9dSBarry Smith */
1384b12f92e5SBarry Smith 
13857086a01eSPeter Brune /*S
13867086a01eSPeter Brune      MatColoring - Object for managing the coloring of matrices.
13877086a01eSPeter Brune 
13887086a01eSPeter Brune    Level: beginner
13897086a01eSPeter Brune 
1390ec5066bdSBarry Smith     Notes:
1391ec5066bdSBarry Smith        Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the MatColoring object or from the mesh from which the
1392ec5066bdSBarry Smith        matrix comes from via DMCreateColoring(). In general using the mesh produces a more optimal coloring (fewer colors).
1393ec5066bdSBarry Smith 
1394ec5066bdSBarry Smith        Once a coloring is available MatFDColoringCreate() creates an object that can be used to efficiently compute Jacobians using that coloring. This
1395ec5066bdSBarry Smith        same object can also be used to efficiently convert data created by Automatic Differentation tools to PETSc sparse matrices.
1396ec5066bdSBarry Smith 
1397db781477SPatrick Sanan .seealso: `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`, `MatOrdering`, `MatPartitioning`, `MatColoringType`
13987086a01eSPeter Brune S*/
1399d4db15c4SBarry Smith typedef struct _p_MatColoring* MatColoring;
1400d4db15c4SBarry Smith 
1401d4db15c4SBarry Smith /*J
1402d4db15c4SBarry Smith     MatColoringType - String with the name of a PETSc matrix coloring
1403d9274352SBarry Smith 
1404d9274352SBarry Smith    Level: beginner
1405d9274352SBarry Smith 
1406db781477SPatrick Sanan .seealso: `MatColoringSetType()`, `MatColoring`
140776bdecfbSBarry Smith J*/
140819fd82e9SBarry Smith typedef const  char*           MatColoringType;
14095567d71aSPeter Brune #define MATCOLORINGJP      "jp"
1410b9acb617SPeter Brune #define MATCOLORINGPOWER   "power"
14112692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural"
14122692d6eeSBarry Smith #define MATCOLORINGSL      "sl"
14132692d6eeSBarry Smith #define MATCOLORINGLF      "lf"
14142692d6eeSBarry Smith #define MATCOLORINGID      "id"
14158121bdceSPeter Brune #define MATCOLORINGGREEDY  "greedy"
1416b12f92e5SBarry Smith 
14178ac6da0aSPeter Brune /*E
14188ac6da0aSPeter Brune    MatColoringWeightType - Type of weight scheme
14198ac6da0aSPeter Brune 
14208ac6da0aSPeter Brune     Not Collective
14218ac6da0aSPeter Brune 
14228ac6da0aSPeter Brune +   MAT_COLORING_RANDOM  - Random weights
14238ac6da0aSPeter Brune .   MAT_COLORING_LEXICAL - Lexical weighting based upon global numbering.
14248ac6da0aSPeter Brune -   MAT_COLORING_LF      - Last-first weighting.
14258ac6da0aSPeter Brune 
14268ac6da0aSPeter Brune     Level: intermediate
14278ac6da0aSPeter Brune 
1428af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
1429ec5066bdSBarry Smith 
1430db781477SPatrick Sanan .seealso: `MatColoring`, `MatColoringCreate()`
14318ac6da0aSPeter Brune E*/
1432301c140bSPeter Brune typedef enum {MAT_COLORING_WEIGHT_RANDOM,MAT_COLORING_WEIGHT_LEXICAL,MAT_COLORING_WEIGHT_LF,MAT_COLORING_WEIGHT_SL} MatColoringWeightType;
14338ac6da0aSPeter Brune 
1434335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat,MatColoring*);
1435d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat,PetscInt,PetscInt*);
1436335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring*);
1437335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring,PetscViewer);
1438335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring,MatColoringType);
1439335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring);
1440335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring,PetscInt);
1441335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring,PetscInt*);
1442335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring,PetscInt);
1443335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring,PetscInt*);
1444335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring,ISColoring*);
1445335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[],PetscErrorCode(*)(MatColoring));
1446014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat,PetscInt,PetscInt,ISColoringValue[],ISColoring*);
14478ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring,MatColoringWeightType);
1448c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring,PetscReal*,PetscInt*);
14498ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring,PetscReal **,PetscInt **lperm);
1450bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring,ISColoring);
14519fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatColoringTest() (since version 3.10)") static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring,ISColoring iscoloring) {return MatColoringTest(matcoloring,iscoloring);}
1452bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat,ISColoring);
1453639f9d9dSBarry Smith 
1454d9274352SBarry Smith /*S
1455d9274352SBarry Smith      MatFDColoring - Object for computing a sparse Jacobian via finite differences
1456d9274352SBarry Smith         and coloring
1457639f9d9dSBarry Smith 
1458d9274352SBarry Smith    Level: beginner
1459d9274352SBarry Smith 
1460ec5066bdSBarry Smith    Notes:
1461ec5066bdSBarry Smith       This object is creating utilizing a coloring provided by the MatColoring object or DMCreateColoring()
1462ec5066bdSBarry Smith 
1463db781477SPatrick Sanan .seealso: `MatFDColoringCreate()`, `MatColoring`, `DMCreateColoring()`
1464d9274352SBarry Smith S*/
1465e2a1c21fSSatish Balay typedef struct _p_MatFDColoring* MatFDColoring;
1466639f9d9dSBarry Smith 
1467014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat,ISColoring,MatFDColoring *);
1468014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring*);
1469014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring,PetscViewer);
1470014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring,PetscErrorCode (*)(void),void*);
1471014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring,PetscErrorCode (**)(void),void**);
1472014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring,PetscReal,PetscReal);
1473014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring);
1474d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat,MatFDColoring,Vec,void *);
1475014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring,Vec);
1476edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring,PetscInt*,const PetscInt*[]);
1477f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat,ISColoring,MatFDColoring);
1478f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring,PetscInt,PetscInt);
1479bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat,MatFDColoring,const PetscScalar*);
1480b1683b59SHong Zhang 
1481b1683b59SHong Zhang /*S
1482b9af6bddSHong Zhang      MatTransposeColoring - Object for computing a sparse matrix product C=A*B^T via coloring
1483b1683b59SHong Zhang 
1484b1683b59SHong Zhang    Level: beginner
1485b1683b59SHong Zhang 
1486db781477SPatrick Sanan .seealso: `MatTransposeColoringCreate()`
1487b1683b59SHong Zhang S*/
1488b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring* MatTransposeColoring;
1489b1683b59SHong Zhang 
1490014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat,ISColoring,MatTransposeColoring *);
1491014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring,Mat,Mat);
1492014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring,Mat,Mat);
1493014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring*);
1494b1683b59SHong Zhang 
1495639f9d9dSBarry Smith /*
14960752156aSBarry Smith     These routines are for partitioning matrices: currently used only
14973eda8832SBarry Smith   for adjacency matrix, MatCreateMPIAdj().
14980752156aSBarry Smith */
1499ca161407SBarry Smith 
1500d9274352SBarry Smith /*S
1501d9274352SBarry Smith      MatPartitioning - Object for managing the partitioning of a matrix or graph
1502d9274352SBarry Smith 
1503d9274352SBarry Smith    Level: beginner
1504d9274352SBarry Smith 
1505ec5066bdSBarry Smith    Notes:
1506ec5066bdSBarry Smith      There is also a PetscPartitioner object that provides the same functionality. It can utilize the MatPartitioning operations
1507ec5066bdSBarry Smith      via PetscPartitionerSetType(p,PETSCPARTITIONERMATPARTITIONING)
1508ec5066bdSBarry Smith 
1509ec5066bdSBarry Smith    Developers Note:
1510ec5066bdSBarry Smith      It is an extra maintainance and documentation cost to have two objects with the same functionality.
1511ec5066bdSBarry Smith 
1512db781477SPatrick Sanan .seealso: `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`
1513d9274352SBarry Smith S*/
151491e9ee9fSBarry Smith typedef struct _p_MatPartitioning* MatPartitioning;
1515d9274352SBarry Smith 
151676bdecfbSBarry Smith /*J
15178f6c3df8SBarry Smith     MatPartitioningType - String with the name of a PETSc matrix partitioning
1518d9274352SBarry Smith 
1519d9274352SBarry Smith    Level: beginner
15200d04baf8SBarry Smith dm
1521db781477SPatrick Sanan .seealso: `MatPartitioningCreate()`, `MatPartitioning`
152276bdecfbSBarry Smith J*/
152319fd82e9SBarry Smith typedef const char* MatPartitioningType;
15242692d6eeSBarry Smith #define MATPARTITIONINGCURRENT  "current"
1525aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE   "average"
15262692d6eeSBarry Smith #define MATPARTITIONINGSQUARE   "square"
15272692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis"
15282692d6eeSBarry Smith #define MATPARTITIONINGCHACO    "chaco"
15292692d6eeSBarry Smith #define MATPARTITIONINGPARTY    "party"
153050d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch"
153188d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH  "hierarch"
153271306c60Sjroman 
1533014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm,MatPartitioning*);
153419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning,MatPartitioningType);
1535014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning,PetscInt);
1536014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning,Mat);
1537014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning,const PetscInt[]);
1538014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning,const PetscReal []);
1539ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning,PetscBool);
1540ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning,PetscBool*);
1541014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning,IS*);
1542fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning,IS*);
1543668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning,IS);
1544f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning,IS*);
1545014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning*);
1546bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[],PetscErrorCode (*)(MatPartitioning));
1547014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning,PetscViewer);
1548fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning,PetscObject,const char[]);
1549014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning);
155019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning,MatPartitioningType*);
1551ca161407SBarry Smith 
155227538973SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part);
1553014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning);
1554014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *);
15550752156aSBarry Smith 
1556b6956c12SJose Roman typedef enum { MP_CHACO_MULTILEVEL=1,MP_CHACO_SPECTRAL=2,MP_CHACO_LINEAR=4,MP_CHACO_RANDOM=5,MP_CHACO_SCATTERED=6 } MPChacoGlobalType;
15576a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[];
1558b6956c12SJose Roman typedef enum { MP_CHACO_KERNIGHAN=1,MP_CHACO_NONE=2 } MPChacoLocalType;
15596a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[];
1560b6956c12SJose Roman typedef enum { MP_CHACO_LANCZOS=0,MP_CHACO_RQI=1 } MPChacoEigenType;
15616a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[];
1562b6956c12SJose Roman 
1563014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning,MPChacoGlobalType);
1564014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning,MPChacoGlobalType*);
1565014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning,MPChacoLocalType);
1566014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning,MPChacoLocalType*);
1567014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning,PetscReal);
1568014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning,MPChacoEigenType);
1569014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning,MPChacoEigenType*);
1570014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning,PetscReal);
1571014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning,PetscReal*);
1572014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning,PetscInt);
1573014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning,PetscInt*);
157471306c60Sjroman 
157571306c60Sjroman #define MP_PARTY_OPT "opt"
157671306c60Sjroman #define MP_PARTY_LIN "lin"
157771306c60Sjroman #define MP_PARTY_SCA "sca"
157871306c60Sjroman #define MP_PARTY_RAN "ran"
157971306c60Sjroman #define MP_PARTY_GBF "gbf"
158071306c60Sjroman #define MP_PARTY_GCF "gcf"
158171306c60Sjroman #define MP_PARTY_BUB "bub"
158271306c60Sjroman #define MP_PARTY_DEF "def"
1583014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning,const char*);
158471306c60Sjroman #define MP_PARTY_HELPFUL_SETS "hs"
158571306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl"
158671306c60Sjroman #define MP_PARTY_NONE "no"
1587014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning,const char*);
1588014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning,PetscReal);
1589014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning,PetscBool);
1590014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning,PetscBool);
159171306c60Sjroman 
1592b0ca845eSVaclav Hapla typedef enum { MP_PTSCOTCH_DEFAULT,MP_PTSCOTCH_QUALITY,MP_PTSCOTCH_SPEED,MP_PTSCOTCH_BALANCE,MP_PTSCOTCH_SAFETY,MP_PTSCOTCH_SCALABILITY } MPPTScotchStrategyType;
15936a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[];
1594e0f1cffaSJose Roman 
1595014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning,PetscReal);
1596014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning,PetscReal*);
1597014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning,MPPTScotchStrategyType);
1598014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning,MPPTScotchStrategyType*);
159971306c60Sjroman 
1600b43b03e9SMark F. Adams /*
16016294fa2bSFande Kong  * hierarchical partitioning
16026294fa2bSFande Kong  */
16034e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning,IS*);
16044e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning,IS*);
16054e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning,PetscInt);
16064e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt);
16076294fa2bSFande Kong 
1608014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToVertexGraph(Mat,PetscInt,Mat*);
1609014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat,PetscInt,Mat*);
1610591294e4SBarry Smith 
16110752156aSBarry Smith /*
1612c786d857SStefano Zampini     If you add entries here you must also add them to src/mat/f90-mod/petscmat.h
1613c786d857SStefano Zampini     If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx
1614d4fbbf0eSBarry Smith */
16151c1c02c0SLois Curfman McInnes typedef enum { MATOP_SET_VALUES=0,
16161c1c02c0SLois Curfman McInnes                MATOP_GET_ROW=1,
16171c1c02c0SLois Curfman McInnes                MATOP_RESTORE_ROW=2,
16181c1c02c0SLois Curfman McInnes                MATOP_MULT=3,
16191c1c02c0SLois Curfman McInnes                MATOP_MULT_ADD=4,
16207c922b88SBarry Smith                MATOP_MULT_TRANSPOSE=5,
16217c922b88SBarry Smith                MATOP_MULT_TRANSPOSE_ADD=6,
16221c1c02c0SLois Curfman McInnes                MATOP_SOLVE=7,
16231c1c02c0SLois Curfman McInnes                MATOP_SOLVE_ADD=8,
16247c922b88SBarry Smith                MATOP_SOLVE_TRANSPOSE=9,
16257c922b88SBarry Smith                MATOP_SOLVE_TRANSPOSE_ADD=10,
16261c1c02c0SLois Curfman McInnes                MATOP_LUFACTOR=11,
16271c1c02c0SLois Curfman McInnes                MATOP_CHOLESKYFACTOR=12,
1628a714c06dSBarry Smith                MATOP_SOR=13,
16291c1c02c0SLois Curfman McInnes                MATOP_TRANSPOSE=14,
16301c1c02c0SLois Curfman McInnes                MATOP_GETINFO=15,
16311c1c02c0SLois Curfman McInnes                MATOP_EQUAL=16,
16321c1c02c0SLois Curfman McInnes                MATOP_GET_DIAGONAL=17,
16331c1c02c0SLois Curfman McInnes                MATOP_DIAGONAL_SCALE=18,
16341c1c02c0SLois Curfman McInnes                MATOP_NORM=19,
16351c1c02c0SLois Curfman McInnes                MATOP_ASSEMBLY_BEGIN=20,
16361c1c02c0SLois Curfman McInnes                MATOP_ASSEMBLY_END=21,
1637d519adbfSMatthew Knepley                MATOP_SET_OPTION=22,
1638d519adbfSMatthew Knepley                MATOP_ZERO_ENTRIES=23,
1639d519adbfSMatthew Knepley                MATOP_ZERO_ROWS=24,
1640d519adbfSMatthew Knepley                MATOP_LUFACTOR_SYMBOLIC=25,
1641d519adbfSMatthew Knepley                MATOP_LUFACTOR_NUMERIC=26,
1642d519adbfSMatthew Knepley                MATOP_CHOLESKY_FACTOR_SYMBOLIC=27,
1643d519adbfSMatthew Knepley                MATOP_CHOLESKY_FACTOR_NUMERIC=28,
1644e5f2d425SStefano Zampini                MATOP_SETUP=29,
1645d519adbfSMatthew Knepley                MATOP_ILUFACTOR_SYMBOLIC=30,
1646d519adbfSMatthew Knepley                MATOP_ICCFACTOR_SYMBOLIC=31,
1647a5b7ff6bSBarry Smith                MATOP_GET_DIAGONAL_BLOCK=32,
1648e5f2d425SStefano Zampini                MATOP_SET_INF=33,
1649d519adbfSMatthew Knepley                MATOP_DUPLICATE=34,
1650d519adbfSMatthew Knepley                MATOP_FORWARD_SOLVE=35,
1651d519adbfSMatthew Knepley                MATOP_BACKWARD_SOLVE=36,
1652d519adbfSMatthew Knepley                MATOP_ILUFACTOR=37,
1653d519adbfSMatthew Knepley                MATOP_ICCFACTOR=38,
1654d519adbfSMatthew Knepley                MATOP_AXPY=39,
16557dae84e0SHong Zhang                MATOP_CREATE_SUBMATRICES=40,
1656d519adbfSMatthew Knepley                MATOP_INCREASE_OVERLAP=41,
1657d519adbfSMatthew Knepley                MATOP_GET_VALUES=42,
1658d519adbfSMatthew Knepley                MATOP_COPY=43,
1659d519adbfSMatthew Knepley                MATOP_GET_ROW_MAX=44,
1660d519adbfSMatthew Knepley                MATOP_SCALE=45,
1661d519adbfSMatthew Knepley                MATOP_SHIFT=46,
166235153367SBarry Smith                MATOP_DIAGONAL_SET=47,
16639d39f69dSJed Brown                MATOP_ZERO_ROWS_COLUMNS=48,
16649d39f69dSJed Brown                MATOP_SET_RANDOM=49,
1665d519adbfSMatthew Knepley                MATOP_GET_ROW_IJ=50,
1666d519adbfSMatthew Knepley                MATOP_RESTORE_ROW_IJ=51,
1667d519adbfSMatthew Knepley                MATOP_GET_COLUMN_IJ=52,
1668d519adbfSMatthew Knepley                MATOP_RESTORE_COLUMN_IJ=53,
1669d519adbfSMatthew Knepley                MATOP_FDCOLORING_CREATE=54,
1670d519adbfSMatthew Knepley                MATOP_COLORING_PATCH=55,
1671d519adbfSMatthew Knepley                MATOP_SET_UNFACTORED=56,
1672d519adbfSMatthew Knepley                MATOP_PERMUTE=57,
1673d519adbfSMatthew Knepley                MATOP_SET_VALUES_BLOCKED=58,
16747dae84e0SHong Zhang                MATOP_CREATE_SUBMATRIX=59,
1675d519adbfSMatthew Knepley                MATOP_DESTROY=60,
1676d519adbfSMatthew Knepley                MATOP_VIEW=61,
1677d519adbfSMatthew Knepley                MATOP_CONVERT_FROM=62,
1678e5f2d425SStefano Zampini                /* MATOP_PLACEHOLDER_63=63 */
16797bab7c10SHong Zhang                MATOP_MATMAT_MULT_SYMBOLIC=64,
16807bab7c10SHong Zhang                MATOP_MATMAT_MULT_NUMERIC=65,
1681d519adbfSMatthew Knepley                MATOP_SET_LOCAL_TO_GLOBAL_MAP=66,
1682d519adbfSMatthew Knepley                MATOP_SET_VALUES_LOCAL=67,
1683d519adbfSMatthew Knepley                MATOP_ZERO_ROWS_LOCAL=68,
1684d519adbfSMatthew Knepley                MATOP_GET_ROW_MAX_ABS=69,
1685d519adbfSMatthew Knepley                MATOP_GET_ROW_MIN_ABS=70,
1686d519adbfSMatthew Knepley                MATOP_CONVERT=71,
1687e5f2d425SStefano Zampini                MATOP_HAS_OPERATION=72,
16889d39f69dSJed Brown                /* MATOP_PLACEHOLDER_73=73, */
1689d519adbfSMatthew Knepley                MATOP_SET_VALUES_ADIFOR=74,
1690d519adbfSMatthew Knepley                MATOP_FD_COLORING_APPLY=75,
1691d519adbfSMatthew Knepley                MATOP_SET_FROM_OPTIONS=76,
1692e5f2d425SStefano Zampini                /* MATOP_PLACEHOLDER_77=77, */
1693e5f2d425SStefano Zampini                /* MATOP_PLACEHOLDER_78=78, */
16949d39f69dSJed Brown                MATOP_FIND_ZERO_DIAGONALS=79,
1695d519adbfSMatthew Knepley                MATOP_MULT_MULTIPLE=80,
1696d519adbfSMatthew Knepley                MATOP_SOLVE_MULTIPLE=81,
1697d519adbfSMatthew Knepley                MATOP_GET_INERTIA=82,
1698d519adbfSMatthew Knepley                MATOP_LOAD=83,
1699d519adbfSMatthew Knepley                MATOP_IS_SYMMETRIC=84,
1700d519adbfSMatthew Knepley                MATOP_IS_HERMITIAN=85,
1701d519adbfSMatthew Knepley                MATOP_IS_STRUCTURALLY_SYMMETRIC=86,
1702820469bcSHong Zhang                MATOP_SET_VALUES_BLOCKEDLOCAL=87,
1703b41ce5d5SBarry Smith                MATOP_CREATE_VECS=88,
1704e5f2d425SStefano Zampini                /* MATOP_PLACEHOLDER_89=89, */
1705d519adbfSMatthew Knepley                MATOP_MAT_MULT_SYMBOLIC=90,
1706d519adbfSMatthew Knepley                MATOP_MAT_MULT_NUMERIC=91,
1707e5f2d425SStefano Zampini                /* MATOP_PLACEHOLDER_92=92, */
1708d519adbfSMatthew Knepley                MATOP_PTAP_SYMBOLIC=93,
1709d519adbfSMatthew Knepley                MATOP_PTAP_NUMERIC=94,
1710e5f2d425SStefano Zampini                /* MATOP_PLACEHOLDER_95=95, */
1711bda6c4cbSBarry Smith                MATOP_MAT_TRANSPOSE_MULT_SYMBO=96,
1712bda6c4cbSBarry Smith                MATOP_MAT_TRANSPOSE_MULT_NUMER=97,
1713e5f2d425SStefano Zampini                MATOP_BIND_TO_CPU=98,
17147a3c3d58SStefano Zampini                MATOP_PRODUCTSETFROMOPTIONS=99,
17157a3c3d58SStefano Zampini                MATOP_PRODUCTSYMBOLIC=100,
17167a3c3d58SStefano Zampini                MATOP_PRODUCTNUMERIC=101,
1717d519adbfSMatthew Knepley                MATOP_CONJUGATE=102,
1718e5f2d425SStefano Zampini                MATOP_VIEW_NATIVE=103,
1719d519adbfSMatthew Knepley                MATOP_SET_VALUES_ROW=104,
1720d519adbfSMatthew Knepley                MATOP_REAL_PART=105,
1721bda6c4cbSBarry Smith                MATOP_IMAGINARY_PART=106,
1722bda6c4cbSBarry Smith                MATOP_GET_ROW_UPPER_TRIANGULAR=107,
1723bda6c4cbSBarry Smith                MATOP_RESTORE_ROW_UPPER_TRIANG=108,
1724bda6c4cbSBarry Smith                MATOP_MAT_SOLVE=109,
172529eadf9eSStefano Zampini                MATOP_MAT_SOLVE_TRANSPOSE=110,
1726d519adbfSMatthew Knepley                MATOP_GET_ROW_MIN=111,
17270e8d04f7SBarry Smith                MATOP_GET_COLUMN_VECTOR=112,
1728d519adbfSMatthew Knepley                MATOP_MISSING_DIAGONAL=113,
17290e8d04f7SBarry Smith                MATOP_GET_SEQ_NONZERO_STRUCTUR=114,
173089c6957cSBarry Smith                MATOP_CREATE=115,
173189c6957cSBarry Smith                MATOP_GET_GHOSTS=116,
17320e8d04f7SBarry Smith                MATOP_GET_LOCAL_SUB_MATRIX=117,
17330e8d04f7SBarry Smith                MATOP_RESTORE_LOCALSUB_MATRIX=118,
1734eeffb40dSHong Zhang                MATOP_MULT_DIAGONAL_BLOCK=119,
17350e8d04f7SBarry Smith                MATOP_HERMITIAN_TRANSPOSE=120,
17360e8d04f7SBarry Smith                MATOP_MULT_HERMITIAN_TRANSPOSE=121,
17370e8d04f7SBarry Smith                MATOP_MULT_HERMITIAN_TRANS_ADD=122,
17380e8d04f7SBarry Smith                MATOP_GET_MULTI_PROC_BLOCK=123,
17399d39f69dSJed Brown                MATOP_FIND_NONZERO_ROWS=124,
17400e8d04f7SBarry Smith                MATOP_GET_COLUMN_NORMS=125,
17419d39f69dSJed Brown                MATOP_INVERT_BLOCK_DIAGONAL=126,
1742e5f2d425SStefano Zampini                MATOP_INVERT_VBLOCK_DIAGONAL=127,
1743b41ce5d5SBarry Smith                MATOP_CREATE_SUB_MATRICES_MPI=128,
17442b8ad9a3SHong Zhang                MATOP_SET_VALUES_BATCH=129,
1745e5f2d425SStefano Zampini                /* MATOP_PLACEHOLDER_130=130, */
17460e8d04f7SBarry Smith                MATOP_TRANSPOSE_MAT_MULT_SYMBO=131,
1747e9b602ebSSatish Balay                MATOP_TRANSPOSE_MAT_MULT_NUMER=132,
17480e8d04f7SBarry Smith                MATOP_TRANSPOSE_COLORING_CREAT=133,
17490e8d04f7SBarry Smith                MATOP_TRANS_COLORING_APPLY_SPT=134,
17500e8d04f7SBarry Smith                MATOP_TRANS_COLORING_APPLY_DEN=135,
1751e5f2d425SStefano Zampini                /* MATOP_PLACEHOLDER_136=136, */
17520e8d04f7SBarry Smith                MATOP_RART_SYMBOLIC=137,
17530e8d04f7SBarry Smith                MATOP_RART_NUMERIC=138,
1754e09a3074SHong Zhang                MATOP_SET_BLOCK_SIZES=139,
1755f9426fe0SMark Adams                MATOP_AYPX=140,
17561919a2e2SJed Brown                MATOP_RESIDUAL=141,
17579c8f2541SHong Zhang                MATOP_FDCOLORING_SETUP=142,
1758e5f2d425SStefano Zampini                MATOP_FIND_OFFBLOCK_ENTRIES=143,
17592d033e1fSHong Zhang                MATOP_MPICONCATENATESEQ=144,
1760bb01b7b0SPatrick Sanan                MATOP_DESTROYSUBMATRICES=145,
1761e265f6d6SPatrick Sanan                MATOP_TRANSPOSE_SOLVE=146,
1762e265f6d6SPatrick Sanan                MATOP_GET_VALUES_LOCAL=147
1763fae171e0SBarry Smith              } MatOperation;
17640c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat,MatOperation,void(*)(void));
1765976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat,MatOperation,void(**)(void));
1766976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat,MatOperation,PetscBool*);
176794342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat,PetscBool*);
17689fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatProductClear() (since version 3.14)") static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A) {return MatProductClear(A);}
1769014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat,MatOperation,void(*)(void));
1770014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat,MatOperation,void(**)(void));
1771014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat,void*);
1772db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat,VecType);
1773f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat,PetscErrorCode (*)(void*,Vec,Vec),Vec,void*,PetscBool*);
1774f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat,PetscErrorCode (*)(void*,Vec,Vec),Vec,void*,PetscBool*);
17750c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat);
1776b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat,MatProductType,PetscErrorCode (*)(Mat,Mat,Mat,void**),PetscErrorCode (*)(Mat,Mat,Mat,void*),PetscErrorCode (*)(void*),MatType,MatType);
1777b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat,PetscBool*);
1778112a2221SBarry Smith 
177990ace30eSBarry Smith /*
178090ace30eSBarry Smith    Codes for matrices stored on disk. By default they are
178190ace30eSBarry Smith    stored in a universal format. By changing the format with
17826a9046bcSBarry Smith    PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will
178390ace30eSBarry Smith    be stored in a way natural for the matrix, for example dense matrices
178490ace30eSBarry Smith    would be stored as dense. Matrices stored this way may only be
1785f4403165SShri Abhyankar    read into matrices of the same type.
178690ace30eSBarry Smith */
178790ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1
178890ace30eSBarry Smith 
1789014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat,PetscReal);
179075d48cdbSStefano Zampini 
17918546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat,MatType);
179275d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
179375d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat,PetscBool);
1794f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat,PetscBool);
1795014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat,Mat*);
17963b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat,Mat*);
1797014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat,Mat);
1798e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat,ISLocalToGlobalMapping*,ISLocalToGlobalMapping*);
179925ef9dfeSBarry Smith PETSC_EXTERN PETSC_DEPRECATED_FUNCTION("Use the MatConvert() interface (since version 3.10)") PetscErrorCode MatISGetMPIXAIJ(Mat,MatReuse,Mat*);
18001f4e1ec7SBarry Smith 
1801d9274352SBarry Smith /*S
1802d9274352SBarry Smith      MatNullSpace - Object that removes a null space from a vector, i.e.
1803cb6b9846SMatthew Knepley          orthogonalizes the vector to a subspace
1804d9274352SBarry Smith 
1805f7a9e4ceSBarry Smith    Level: advanced
1806d9274352SBarry Smith 
1807db781477SPatrick Sanan .seealso: `MatNullSpaceCreate()`
1808d9274352SBarry Smith S*/
180974637425SBarry Smith typedef struct _p_MatNullSpace* MatNullSpace;
1810d9274352SBarry Smith 
1811014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm,PetscBool ,PetscInt,const Vec[],MatNullSpace*);
1812014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace,PetscErrorCode (*)(MatNullSpace,Vec,void*),void*);
1813014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace*);
1814d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace,Vec);
1815014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *);
18165fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *);
18175fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat,MatNullSpace);
1818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat,MatNullSpace);
1819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat,MatNullSpace);
1820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat,MatNullSpace*);
1821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace,Mat,PetscBool  *);
1822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace,PetscViewer);
1823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace,PetscBool*,PetscInt*,const Vec**);
1824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec,MatNullSpace*);
182574637425SBarry Smith 
1826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat,IS);
1827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat,PetscReal);
1828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat,PetscInt *);
18293f1d51d7SBarry Smith 
1830014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat,PetscInt,Mat*);
1831014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat,PetscInt,Mat*);
1832014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat,Mat*);
1833c4f061fbSSatish Balay 
18340bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat,MatType,Mat*);
18350bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat,MatType,Mat*);
18360bacdadaSStefano Zampini 
18379fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatComputeOperator() (since version 3.12)") static inline PetscErrorCode MatComputeExplicitOperator(Mat A,Mat* B) { return MatComputeOperator(A,NULL,B); }
18389fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatComputeOperatorTranspose() (since version 3.12)") static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A,Mat* B) { return MatComputeOperatorTranspose(A,NULL,B); }
1839b0a32e0cSBarry Smith 
184049bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat,PetscInt,PetscInt,const PetscScalar[],const PetscScalar[],Mat*);
184149bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat,Mat*);
1842a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat,PetscInt*,PetscInt*,PetscScalar**);
1843a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat,PetscInt*,PetscInt*,const PetscScalar**);
1844a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat,PetscScalar**);
1845a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat,const PetscScalar**);
1846a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat,PetscInt*,PetscInt*,PetscScalar**);
1847a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat,PetscInt*,PetscInt*,const PetscScalar**);
1848a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat,PetscScalar**);
1849a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat,const PetscScalar**);
1850dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat,Mat);
1851dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat,PetscInt,PetscInt,const PetscScalar[]);
1852dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat,PetscInt,PetscInt,const PetscScalar[]);
1853910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat,PetscBool*);
185449bd79ccSDebojyoti Ghosh 
1855014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat,Vec);
185604f1ad80SBarry Smith 
1857014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,Mat*);
1858014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat,Vec,Vec);
1859014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat,PetscErrorCode(*)(void*,Vec,Vec),void*);
1860014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat,PetscErrorCode (*)(void*,PetscInt,Vec,PetscScalar*));
1861014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat,PetscErrorCode (*)(void*,Vec));
1862014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat,PetscScalar[],PetscInt);
1863014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat);
1864014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat,PetscReal);
1865014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat,PetscInt);
1866014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat,PetscScalar *);
1867014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat,const char[]);
1868014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void*,Vec,Vec,PetscScalar*);
1869014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat,PetscErrorCode (*)(void*,Vec,Vec,PetscScalar*),void*);
1870e884886fSBarry Smith 
18716370053bSBarry Smith /*S
18726370053bSBarry Smith     MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free
18736370053bSBarry Smith               Jacobian vector products
1874e884886fSBarry Smith 
187595452b02SPatrick Sanan     Notes:
187695452b02SPatrick Sanan     MATMFFD is a specific MatType which uses the MatMFFD data structure
18776370053bSBarry Smith 
18786370053bSBarry Smith            MatMFFD*() methods actually take the Mat as their first argument. Not a MatMFFD data structure
18796370053bSBarry Smith 
18806370053bSBarry Smith     Level: developer
18816370053bSBarry Smith 
1882db781477SPatrick Sanan .seealso: `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`
18836370053bSBarry Smith S*/
1884e884886fSBarry Smith typedef struct _p_MatMFFD* MatMFFD;
1885e884886fSBarry Smith 
188676bdecfbSBarry Smith /*J
1887e884886fSBarry Smith     MatMFFDType - algorithm used to compute the h used in computing matrix-vector products via differencing of the function
1888e884886fSBarry Smith 
1889e884886fSBarry Smith    Level: beginner
1890e884886fSBarry Smith 
1891db781477SPatrick Sanan .seealso: `MatMFFDSetType()`, `MatMFFDRegister()`
189276bdecfbSBarry Smith J*/
189319fd82e9SBarry Smith typedef const char* MatMFFDType;
1894e884886fSBarry Smith #define MATMFFD_DS  "ds"
1895e884886fSBarry Smith #define MATMFFD_WP  "wp"
1896e884886fSBarry Smith 
189719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat,MatMFFDType);
1898bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[],PetscErrorCode (*)(MatMFFD));
1899e884886fSBarry Smith 
1900014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat,PetscReal);
1901014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat,PetscBool);
1902e884886fSBarry Smith 
190361ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring,MatMFFDType);
190461ab5df0SBarry Smith 
1905014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *);
1906014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *);
19077dbadf16SMatthew Knepley 
190853022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS
190953022affSStefano Zampini PETSC_EXTERN_TYPEDEF typedef PetscScalar (*MatH2OpusKernel)(PetscInt,PetscReal[],PetscReal[],void*);
191053022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscReal[],PetscBool,MatH2OpusKernel,void*,PetscReal,PetscInt,PetscInt,Mat*);
191153022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat,PetscInt,const PetscReal[],PetscBool,PetscReal,PetscInt,PetscInt,PetscInt,PetscReal,Mat*);
191253022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat,Mat,PetscInt,PetscReal);
191353022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat);
191453022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat,PetscReal);
191553022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat,PetscBool);
191653022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat,PetscBool*);
191753022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat,IS*);
191853022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat,PetscBool,Vec,Vec*);
1919300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat,Mat,Mat,PetscScalar);
1920a0d2e7d8SStefano Zampini #endif
1921a0d2e7d8SStefano Zampini 
1922c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL
192398e73e17SPierre Jolivet PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatHtoolKernel)(PetscInt,PetscInt,PetscInt,const PetscInt*,const PetscInt*,PetscScalar*,void*);
1924c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscReal[],const PetscReal[],MatHtoolKernel,void*,Mat*);
1925c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat,MatHtoolKernel,void*);
192698e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat,IS*);
192798e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat,IS*);
192898e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat,PetscBool);
1929c7a4214aSPierre Jolivet /*E
1930c7a4214aSPierre Jolivet      MatHtoolCompressorType - Indicates the type of compressor used by a MATHTOOL
1931c7a4214aSPierre Jolivet 
1932c7a4214aSPierre Jolivet    Level: beginner
1933c7a4214aSPierre Jolivet 
1934c7a4214aSPierre Jolivet     Values:
1935c7a4214aSPierre Jolivet +   MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA (default) - symmetric partial adaptive cross approximation
1936c7a4214aSPierre Jolivet .   MAT_HTOOL_COMPRESSOR_FULL_ACA - full adaptive cross approximation
1937c7a4214aSPierre Jolivet -   MAT_HTOOL_COMPRESSOR_SVD - singular value decomposition
1938c7a4214aSPierre Jolivet 
1939db781477SPatrick Sanan .seealso: `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType`
1940c7a4214aSPierre Jolivet E*/
1941c7a4214aSPierre Jolivet typedef enum { MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA, MAT_HTOOL_COMPRESSOR_FULL_ACA, MAT_HTOOL_COMPRESSOR_SVD } MatHtoolCompressorType;
194298e73e17SPierre Jolivet /*E
194398e73e17SPierre Jolivet      MatHtoolClusteringType - Indicates the type of clustering used by a MATHTOOL
194498e73e17SPierre Jolivet 
194598e73e17SPierre Jolivet    Level: beginner
194698e73e17SPierre Jolivet 
194798e73e17SPierre Jolivet     Values:
194898e73e17SPierre Jolivet +   MAT_HTOOL_CLUSTERING_PCA_REGULAR (default) - axis computed via principle component analysis, split uniformly
194998e73e17SPierre Jolivet .   MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC - axis computed via principle component analysis, split barycentrically
195098e73e17SPierre Jolivet .   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR - axis along the largest extent of the bounding box, split uniformly
195198e73e17SPierre Jolivet -   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC - axis along the largest extent of the bounding box, split barycentrically
195298e73e17SPierre Jolivet 
195398e73e17SPierre Jolivet     Notes: higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types
195498e73e17SPierre Jolivet 
1955db781477SPatrick Sanan .seealso: `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType`
195698e73e17SPierre Jolivet E*/
195798e73e17SPierre Jolivet typedef enum { MAT_HTOOL_CLUSTERING_PCA_REGULAR, MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC, MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR, MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC } MatHtoolClusteringType;
1958c7a4214aSPierre Jolivet #endif
1959c7a4214aSPierre Jolivet 
196097969023SHong Zhang /*
196197969023SHong Zhang    PETSc interface to MUMPS
196297969023SHong Zhang */
196397969023SHong Zhang #ifdef PETSC_HAVE_MUMPS
1964014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat,PetscInt,PetscInt);
1965bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat,PetscInt,PetscInt*);
1966b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat,PetscInt,PetscReal);
1967bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat,PetscInt,PetscReal*);
1968bc6112feSHong Zhang 
1969ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat,PetscInt,PetscInt*);
1970ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat,PetscInt,PetscInt*);
1971ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat,PetscInt,PetscReal*);
1972ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat,PetscInt,PetscReal*);
197389a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat,Mat);
19740e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat,Mat);
197597969023SHong Zhang #endif
197623a5497aSJed Brown 
1977d954db57SHong Zhang /*
1978d615f992SSatish Balay    PETSc interface to Mkl_Pardiso
1979b500a6b7SJose David Bermeol */
1980b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO
1981d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat,PetscInt,PetscInt);
1982b500a6b7SJose David Bermeol #endif
1983b500a6b7SJose David Bermeol 
1984b500a6b7SJose David Bermeol /*
1985d305a81bSVasiliy Kozyrev    PETSc interface to Mkl_CPardiso
1986d305a81bSVasiliy Kozyrev */
1987d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO
1988d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat,PetscInt,PetscInt);
1989d305a81bSVasiliy Kozyrev #endif
1990d305a81bSVasiliy Kozyrev 
1991d305a81bSVasiliy Kozyrev /*
1992d954db57SHong Zhang    PETSc interface to SUPERLU
1993d954db57SHong Zhang */
1994d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU
1995014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat,PetscReal);
1996d954db57SHong Zhang #endif
1997d954db57SHong Zhang 
1998fb785984SHong Zhang /*
1999fb785984SHong Zhang    PETSc interface to SUPERLU_DIST
2000fb785984SHong Zhang */
2001fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST
2002fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat,PetscScalar*);
2003fb785984SHong Zhang #endif
2004fb785984SHong Zhang 
2005575704cbSPieter Ghysels /*
2006575704cbSPieter Ghysels    PETSc interface to STRUMPACK
2007575704cbSPieter Ghysels */
2008575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK
2009542aee0fSPieter Ghysels /*E
2010542aee0fSPieter Ghysels     MatSTRUMPACKReordering - sparsity reducing ordering to be used in STRUMPACK
2011542aee0fSPieter Ghysels 
2012542aee0fSPieter Ghysels     Level: intermediate
2013542aee0fSPieter Ghysels E*/
201434f43fa5SPieter Ghysels typedef enum {MAT_STRUMPACK_NATURAL=0,
201534f43fa5SPieter Ghysels               MAT_STRUMPACK_METIS=1,
201634f43fa5SPieter Ghysels               MAT_STRUMPACK_PARMETIS=2,
201734f43fa5SPieter Ghysels               MAT_STRUMPACK_SCOTCH=3,
201834f43fa5SPieter Ghysels               MAT_STRUMPACK_PTSCOTCH=4,
201934f43fa5SPieter Ghysels               MAT_STRUMPACK_RCM=5} MatSTRUMPACKReordering;
202034f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat,MatSTRUMPACKReordering);
2021575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat,PetscBool);
202234f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSRelTol(Mat,PetscReal);
20239fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSTRUMPACKSetHSSRelTol() (since version 3.9)") static inline PetscErrorCode MatSTRUMPACKSetHSSRelCompTol(Mat mat,PetscReal rtol) {return MatSTRUMPACKSetHSSRelTol(mat,rtol);}
202434f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSAbsTol(Mat,PetscReal);
202534f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMinSepSize(Mat,PetscInt);
20269fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSTRUMPACKSetHSSMinSepSize() (since version 3.9)") static inline PetscErrorCode MatSTRUMPACKSetHSSMinSize(Mat mat,PetscInt hssminsize) {return MatSTRUMPACKSetHSSMinSepSize(mat,hssminsize);}
202734f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMaxRank(Mat,PetscInt);
2028a36bf211SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSLeafSize(Mat,PetscInt);
2029575704cbSPieter Ghysels #endif
2030575704cbSPieter Ghysels 
2031b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat,PetscBool);
20322216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat,PetscBool*);
20339fbee547SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatBindToCPU (since v3.13)") static inline PetscErrorCode MatPinToCPU(Mat A,PetscBool flg) {return MatBindToCPU(A,flg);}
203465a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat,PetscBool);
2035e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat,PetscBool *);
2036e7e92044SBarry Smith 
2037042217e8SBarry Smith typedef struct _n_SplitCSRMat *PetscSplitCSRDataStructure;
2038042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatCUSPARSEGetDeviceMatWrite(Mat,PetscSplitCSRDataStructure*);
2039a587d139SMark 
2040a587d139SMark #ifdef PETSC_HAVE_KOKKOS_KERNELS
2041042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatKokkosGetDeviceMatWrite(Mat,PetscSplitCSRDataStructure*);
2042042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJKokkosSetDeviceMat(Mat,PetscSplitCSRDataStructure);
2043042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJKokkosGetDeviceMat(Mat,PetscSplitCSRDataStructure*);
2044a587d139SMark #endif
2045a587d139SMark 
2046aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA
20473f9c0db1SPaul Mullowney /*E
2048e057df02SPaul Mullowney     MatCUSPARSEStorageFormat - indicates the storage format for CUSPARSE (GPU)
20492692e278SPaul Mullowney     matrices.
2050e057df02SPaul Mullowney 
2051e057df02SPaul Mullowney     Not Collective
2052e057df02SPaul Mullowney 
20538468deeeSKarl Rupp +   MAT_CUSPARSE_CSR - Compressed Sparse Row
20542692e278SPaul Mullowney .   MAT_CUSPARSE_ELL - Ellpack (requires CUDA 4.2 or later).
20552692e278SPaul Mullowney -   MAT_CUSPARSE_HYB - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later).
2056e057df02SPaul Mullowney 
2057e057df02SPaul Mullowney     Level: intermediate
2058e057df02SPaul Mullowney 
2059af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
2060e057df02SPaul Mullowney 
2061db781477SPatrick Sanan .seealso: `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation`
2062e057df02SPaul Mullowney E*/
2063e057df02SPaul Mullowney 
20643f9c0db1SPaul Mullowney typedef enum {MAT_CUSPARSE_CSR, MAT_CUSPARSE_ELL, MAT_CUSPARSE_HYB} MatCUSPARSEStorageFormat;
2065e057df02SPaul Mullowney 
2066e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */
2067e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[];
2068e057df02SPaul Mullowney 
20693f9c0db1SPaul Mullowney /*E
2070e057df02SPaul Mullowney     MatCUSPARSEFormatOperation - indicates the operation of CUSPARSE (GPU)
20712692e278SPaul Mullowney     matrices whose operation should use a particular storage format.
2072e057df02SPaul Mullowney 
2073e057df02SPaul Mullowney     Not Collective
2074e057df02SPaul Mullowney 
20758468deeeSKarl Rupp +   MAT_CUSPARSE_MULT_DIAG - sets the storage format for the diagonal matrix in the parallel MatMult
20768468deeeSKarl Rupp .   MAT_CUSPARSE_MULT_OFFDIAG - sets the storage format for the offdiagonal matrix in the parallel MatMult
20778468deeeSKarl Rupp .   MAT_CUSPARSE_MULT - sets the storage format for the entire matrix in the serial (single GPU) MatMult
20788468deeeSKarl Rupp -   MAT_CUSPARSE_ALL - sets the storage format for all CUSPARSE (GPU) matrices
2079e057df02SPaul Mullowney 
2080e057df02SPaul Mullowney     Level: intermediate
2081e057df02SPaul Mullowney 
2082db781477SPatrick Sanan .seealso: `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat`
2083e057df02SPaul Mullowney E*/
208436d62e41SPaul Mullowney typedef enum {MAT_CUSPARSE_MULT_DIAG, MAT_CUSPARSE_MULT_OFFDIAG, MAT_CUSPARSE_MULT, MAT_CUSPARSE_ALL} MatCUSPARSEFormatOperation;
2085e057df02SPaul Mullowney 
208610e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*);
208710e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*);
2088e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat,MatCUSPARSEFormatOperation,MatCUSPARSEStorageFormat);
2089365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat,PetscBool);
2090e8d2b73aSMark Adams typedef struct Mat_SeqAIJCUSPARSETriFactors* Mat_SeqAIJCUSPARSETriFactors_p;
20915f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat,PetscBool,const int**,const int**);
20925f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat,PetscBool,const int**,const int**);
20935f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat,const PetscScalar**);
20945f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat,const PetscScalar**);
20955f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat,PetscScalar**);
20965f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat,PetscScalar**);
20975f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat,PetscScalar**);
20985f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat,PetscScalar**);
2099637a0070SStefano Zampini 
2100637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar[],Mat*);
2101637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm,PetscInt,PetscInt,PetscScalar[],Mat*);
2102637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat,PetscScalar[]);
2103637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqDenseCUDASetPreallocation(Mat,PetscScalar[]);
2104637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat,PetscScalar**);
2105637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat,const PetscScalar**);
2106637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat,PetscScalar**);
2107637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat,PetscScalar**);
2108637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat,const PetscScalar**);
2109637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat,PetscScalar**);
2110637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat,const PetscScalar*);
2111d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat,const PetscScalar*);
2112637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat);
21133fa6b06aSMark Adams 
21149ae82921SPaul Mullowney #endif
21159ae82921SPaul Mullowney 
2116d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL)
2117d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*);
2118d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*);
2119d67ff14aSKarl Rupp #endif
2120d67ff14aSKarl Rupp 
212154efbe56SHong Zhang /*
212254efbe56SHong Zhang    PETSc interface to FFTW
212354efbe56SHong Zhang */
212454efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW)
2125014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat,Vec,Vec);
2126014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat,Vec,Vec);
21272a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat,Vec*,Vec*,Vec*);
212854efbe56SHong Zhang #endif
212954efbe56SHong Zhang 
2130d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
2131d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,Mat*);
2132d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat,PetscInt,PetscInt);
2133d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat,PetscInt*,PetscInt*);
2134d24d4204SJose E. Roman #endif
2135d24d4204SJose E. Roman 
2136014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm,PetscInt,const IS[],PetscInt,const IS[],const Mat[],Mat*);
2137014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat,PetscInt*,PetscInt*);
2138014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat,IS[],IS[]);
2139014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat,IS[],IS[]);
2140014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat,PetscInt*,PetscInt*,Mat***);
2141014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat,PetscInt,PetscInt,Mat*);
214219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat,VecType);
2143014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat,PetscInt,const IS[],PetscInt,const IS[],const Mat[]);
2144014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat,PetscInt,PetscInt,Mat);
2145d8588912SDave May 
21464325cce7SMatthew G Knepley PETSC_EXTERN PetscErrorCode MatChop(Mat,PetscReal);
2147e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat,PetscReal,PetscInt*);
21484325cce7SMatthew G Knepley 
2149b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat,PetscInt,PetscInt*,IS**);
215053dd7562SDmitry Karpeev 
2151c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat,PetscBool,Mat);
2152c094ef40SMatthew G. Knepley 
2153539c167fSBarry Smith PETSC_INTERN PetscErrorCode MatHeaderMerge(Mat,Mat*);
2154539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat,Mat*);
21551a2c6b5cSJunchao Zhang 
21567ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat,const PetscInt**,const PetscInt**,PetscScalar**,PetscMemType*);
215772833a62Smarkadams4 
215872833a62Smarkadams4 PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat,PetscBool,PetscBool,Mat*);
215972833a62Smarkadams4 PETSC_EXTERN PetscErrorCode MatFilter(Mat,PetscReal,Mat*);
216072833a62Smarkadams4 
216123a5497aSJed Brown #endif
2162