xref: /petsc/include/petscmat.h (revision 773bf0f69b9b2a05ff80bbab7f5cfee096f500d4)
12eac72dbSBarry Smith /*
22eac72dbSBarry Smith      Include file for the matrix component of PETSc
32eac72dbSBarry Smith */
4a4963045SJacob Faibussowitsch #pragma once
5ac09b921SBarry Smith 
62c8e378dSBarry Smith #include <petscvec.h>
72eac72dbSBarry Smith 
8ac09b921SBarry Smith /* SUBMANSEC = Mat */
9ac09b921SBarry Smith 
10d9274352SBarry Smith /*S
118f6c3df8SBarry Smith    Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without
12af27ebaaSBarry Smith          an explicit sparse representation (such as matrix-free operators). Also used to hold representations of graphs
13af27ebaaSBarry Smith          for graph operations such as coloring, `MatColoringCreate()`
142eac72dbSBarry Smith 
15d91e6319SBarry Smith    Level: beginner
16d91e6319SBarry Smith 
172ef1f0ffSBarry Smith    Note:
181cc06b55SBarry Smith    See [](doc_matrix), [](ch_matrices) and `MatType` for available matrix types
192ef1f0ffSBarry Smith 
201cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()`
21d9274352SBarry Smith S*/
22d9274352SBarry Smith typedef struct _p_Mat *Mat;
23d9274352SBarry Smith 
2476bdecfbSBarry Smith /*J
258f6c3df8SBarry Smith    MatType - String with the name of a PETSc matrix type
26d9274352SBarry Smith 
27d9274352SBarry Smith    Level: beginner
28d9274352SBarry Smith 
292ef1f0ffSBarry Smith    Note:
302ef1f0ffSBarry Smith    [](doc_matrix) for a table of available matrix types
312ef1f0ffSBarry Smith 
321cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()`
3376bdecfbSBarry Smith J*/
3419fd82e9SBarry Smith typedef const char *MatType;
35273d9f13SBarry Smith #define MATSAME                      "same"
365a11e1b2SBarry Smith #define MATMAIJ                      "maij"
37273d9f13SBarry Smith #define MATSEQMAIJ                   "seqmaij"
38273d9f13SBarry Smith #define MATMPIMAIJ                   "mpimaij"
3949bd79ccSDebojyoti Ghosh #define MATKAIJ                      "kaij"
4049bd79ccSDebojyoti Ghosh #define MATSEQKAIJ                   "seqkaij"
4149bd79ccSDebojyoti Ghosh #define MATMPIKAIJ                   "mpikaij"
42273d9f13SBarry Smith #define MATIS                        "is"
435a11e1b2SBarry Smith #define MATAIJ                       "aij"
44273d9f13SBarry Smith #define MATSEQAIJ                    "seqaij"
45273d9f13SBarry Smith #define MATMPIAIJ                    "mpiaij"
465a11e1b2SBarry Smith #define MATAIJCRL                    "aijcrl"
475a11e1b2SBarry Smith #define MATSEQAIJCRL                 "seqaijcrl"
485a11e1b2SBarry Smith #define MATMPIAIJCRL                 "mpiaijcrl"
499ae82921SPaul Mullowney #define MATAIJCUSPARSE               "aijcusparse"
509ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE            "seqaijcusparse"
519ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE            "mpiaijcusparse"
5247d993e7Ssuyashtn #define MATAIJHIPSPARSE              "aijhipsparse"
5347d993e7Ssuyashtn #define MATSEQAIJHIPSPARSE           "seqaijhipsparse"
5447d993e7Ssuyashtn #define MATMPIAIJHIPSPARSE           "mpiaijhipsparse"
558c3ff71bSJunchao Zhang #define MATAIJKOKKOS                 "aijkokkos"
568c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS              "seqaijkokkos"
578c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS              "mpiaijkokkos"
58d67ff14aSKarl Rupp #define MATAIJVIENNACL               "aijviennacl"
59d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL            "seqaijviennacl"
60d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL            "mpiaijviennacl"
615a11e1b2SBarry Smith #define MATAIJPERM                   "aijperm"
625a11e1b2SBarry Smith #define MATSEQAIJPERM                "seqaijperm"
635a11e1b2SBarry Smith #define MATMPIAIJPERM                "mpiaijperm"
644dfdc2d9SRichard Tran Mills #define MATAIJSELL                   "aijsell"
654dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL                "seqaijsell"
664dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL                "mpiaijsell"
674a2a386eSRichard Tran Mills #define MATAIJMKL                    "aijmkl"
684a2a386eSRichard Tran Mills #define MATSEQAIJMKL                 "seqaijmkl"
694a2a386eSRichard Tran Mills #define MATMPIAIJMKL                 "mpiaijmkl"
70b5b72c8aSIrina Sokolova #define MATBAIJMKL                   "baijmkl"
71b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL                "seqbaijmkl"
72b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL                "mpibaijmkl"
73273d9f13SBarry Smith #define MATSHELL                     "shell"
74c1fff1c6SRichard Tran Mills #define MATCENTERING                 "centering"
755a11e1b2SBarry Smith #define MATDENSE                     "dense"
76637a0070SStefano Zampini #define MATDENSECUDA                 "densecuda"
7747d993e7Ssuyashtn #define MATDENSEHIP                  "densehip"
78209238afSKris Buschelman #define MATSEQDENSE                  "seqdense"
79bfc799aaSStefano Zampini #define MATSEQDENSECUDA              "seqdensecuda"
8047d993e7Ssuyashtn #define MATSEQDENSEHIP               "seqdensehip"
81273d9f13SBarry Smith #define MATMPIDENSE                  "mpidense"
82637a0070SStefano Zampini #define MATMPIDENSECUDA              "mpidensecuda"
8347d993e7Ssuyashtn #define MATMPIDENSEHIP               "mpidensehip"
84db31f6deSJed Brown #define MATELEMENTAL                 "elemental"
85d24d4204SJose E. Roman #define MATSCALAPACK                 "scalapack"
865a11e1b2SBarry Smith #define MATBAIJ                      "baij"
87273d9f13SBarry Smith #define MATSEQBAIJ                   "seqbaij"
88273d9f13SBarry Smith #define MATMPIBAIJ                   "mpibaij"
89273d9f13SBarry Smith #define MATMPIADJ                    "mpiadj"
905a11e1b2SBarry Smith #define MATSBAIJ                     "sbaij"
91273d9f13SBarry Smith #define MATSEQSBAIJ                  "seqsbaij"
92273d9f13SBarry Smith #define MATMPISBAIJ                  "mpisbaij"
93cebc7f6cSBarry Smith #define MATMFFD                      "mffd"
94c8a8475eSBarry Smith #define MATNORMAL                    "normal"
95c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN           "normalh"
96ab92ecdeSBarry Smith #define MATLRC                       "lrc"
972a6744ebSBarry Smith #define MATSCATTER                   "scatter"
98421e10b8SBarry Smith #define MATBLOCKMAT                  "blockmat"
99793850ffSBarry Smith #define MATCOMPOSITE                 "composite"
1001f8c7532SHong Zhang #define MATFFT                       "fft"
1011f8c7532SHong Zhang #define MATFFTW                      "fftw"
102e133240eSMatthew G Knepley #define MATSEQCUFFT                  "seqcufft"
10347d993e7Ssuyashtn #define MATSEQHIPFFT                 "seqhipfft"
104edd03b47SJacob Faibussowitsch #define MATTRANSPOSEMAT              PETSC_DEPRECATED_MACRO(3, 18, 0, "MATTRANSPOSEVIRTUAL", ) "transpose"
105013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL          "transpose"
106013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose"
10772ca8751SBarry Smith #define MATSCHURCOMPLEMENT           "schurcomplement"
1081d6018f0SLisandro Dalcin #define MATPYTHON                    "python"
10963c07aadSStefano Zampini #define MATHYPRE                     "hypre"
110f91d8e95SBarry Smith #define MATHYPRESTRUCT               "hyprestruct"
111a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT              "hypresstruct"
112ee1cef2cSJed Brown #define MATSUBMATRIX                 "submatrix"
1132c0dbf93SJed Brown #define MATLOCALREF                  "localref"
114d8588912SDave May #define MATNEST                      "nest"
115c094ef40SMatthew G. Knepley #define MATPREALLOCATOR              "preallocator"
116d4002b98SHong Zhang #define MATSELL                      "sell"
117d4002b98SHong Zhang #define MATSEQSELL                   "seqsell"
118d4002b98SHong Zhang #define MATMPISELL                   "mpisell"
1192d1451d4SHong Zhang #define MATSELLCUDA                  "sellcuda"
1202d1451d4SHong Zhang #define MATSEQSELLCUDA               "seqsellcuda"
1212d1451d4SHong Zhang #define MATMPISELLCUDA               "mpisellcuda"
122*773bf0f6SHong Zhang #define MATSELLHIP                   "sellhip"
123*773bf0f6SHong Zhang #define MATSEQSELLHIP                "seqsellhip"
124*773bf0f6SHong Zhang #define MATMPISELLHIP                "mpisellhip"
125a3b2e22bSHong Zhang #define MATDUMMY                     "dummy"
126cd929ea3SAlp Dener #define MATLMVM                      "lmvm"
12778e4361aSAlp Dener #define MATLMVMDFP                   "lmvmdfp"
128bbb72809SHansol Suh #define MATLMVMDDFP                  "lmvmddfp"
12978e4361aSAlp Dener #define MATLMVMBFGS                  "lmvmbfgs"
130bbb72809SHansol Suh #define MATLMVMDBFGS                 "lmvmdbfgs"
131bbb72809SHansol Suh #define MATLMVMDQN                   "lmvmdqn"
13278e4361aSAlp Dener #define MATLMVMSR1                   "lmvmsr1"
133864588a7SAlp Dener #define MATLMVMBROYDEN               "lmvmbroyden"
134864588a7SAlp Dener #define MATLMVMBADBROYDEN            "lmvmbadbroyden"
135864588a7SAlp Dener #define MATLMVMSYMBROYDEN            "lmvmsymbroyden"
136864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN         "lmvmsymbadbroyden"
137864588a7SAlp Dener #define MATLMVMDIAGBROYDEN           "lmvmdiagbroyden"
1383423f386SBarry Smith #define MATCONSTANTDIAGONAL          "constantdiagonal"
139345a4b08SToby Isaac #define MATDIAGONAL                  "diagonal"
140c7a4214aSPierre Jolivet #define MATHTOOL                     "htool"
14153022affSStefano Zampini #define MATH2OPUS                    "h2opus"
142773941d6SBarry Smith 
14376bdecfbSBarry Smith /*J
144af27ebaaSBarry Smith    MatSolverType - String with the name of a PETSc factorization-based matrix solver type.
1459989ab13SBarry Smith 
146c2b89b5dSBarry Smith    For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc
1479989ab13SBarry Smith 
1489989ab13SBarry Smith    Level: beginner
1499989ab13SBarry Smith 
1502ef1f0ffSBarry Smith    Note:
15116a05f60SBarry Smith    `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as
15216a05f60SBarry Smith    a ./configure option to install them
153c7ccbb75SBarry Smith 
1541cc06b55SBarry Smith .seealso: [](sec_matfactor), [](ch_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()`
15576bdecfbSBarry Smith J*/
156ea799195SBarry Smith typedef const char *MatSolverType;
1572692d6eeSBarry Smith #define MATSOLVERSUPERLU      "superlu"
1582692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST "superlu_dist"
15908f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK    "strumpack"
1602692d6eeSBarry Smith #define MATSOLVERUMFPACK      "umfpack"
16120db9a53SJed Brown #define MATSOLVERCHOLMOD      "cholmod"
162d89f5e7aSBarry Smith #define MATSOLVERKLU          "klu"
163d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL    "elemental"
164d24d4204SJose E. Roman #define MATSOLVERSCALAPACK    "scalapack"
1652692d6eeSBarry Smith #define MATSOLVERESSL         "essl"
1662692d6eeSBarry Smith #define MATSOLVERLUSOL        "lusol"
1672692d6eeSBarry Smith #define MATSOLVERMUMPS        "mumps"
168d615f992SSatish Balay #define MATSOLVERMKL_PARDISO  "mkl_pardiso"
169d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO "mkl_cpardiso"
1702692d6eeSBarry Smith #define MATSOLVERPASTIX       "pastix"
1712692d6eeSBarry Smith #define MATSOLVERMATLAB       "matlab"
1722692d6eeSBarry Smith #define MATSOLVERPETSC        "petsc"
1732692d6eeSBarry Smith #define MATSOLVERBAS          "bas"
1749ae82921SPaul Mullowney #define MATSOLVERCUSPARSE     "cusparse"
175bfc799aaSStefano Zampini #define MATSOLVERCUDA         "cuda"
17647d993e7Ssuyashtn #define MATSOLVERHIPSPARSE    "hipsparse"
17747d993e7Ssuyashtn #define MATSOLVERHIP          "hip"
178930e68a5SMark Adams #define MATSOLVERKOKKOS       "kokkos"
179a2fc1e05SToby Isaac #define MATSOLVERSPQR         "spqr"
180c0cdd4a1SDahai Guo 
181b24902e0SBarry Smith /*E
182b24902e0SBarry Smith     MatFactorType - indicates what type of factorization is requested
183b24902e0SBarry Smith 
1842ef1f0ffSBarry Smith     Values:
1852ef1f0ffSBarry Smith +  `MAT_FACTOR_LU`       - LU factorization
1862ef1f0ffSBarry Smith .  `MAT_FACTOR_CHOLESKY` - Cholesky factorization
1872ef1f0ffSBarry Smith .  `MAT_FACTOR_ILU`      - ILU factorization
1882ef1f0ffSBarry Smith .  `MAT_FACTOR_ICC`      - incomplete Cholesky factorization
1892ef1f0ffSBarry Smith .  `MAT_FACTOR_ILUDT`    - ILU factorization with drop tolerance
1902ef1f0ffSBarry Smith -  `MAT_FACTOR_QR`       - QR factorization
191b24902e0SBarry Smith 
19216a05f60SBarry Smith     Level: beginner
19316a05f60SBarry Smith 
1941cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()`
195b24902e0SBarry Smith E*/
1969371c9d4SSatish Balay typedef enum {
1979371c9d4SSatish Balay   MAT_FACTOR_NONE,
1989371c9d4SSatish Balay   MAT_FACTOR_LU,
1999371c9d4SSatish Balay   MAT_FACTOR_CHOLESKY,
2009371c9d4SSatish Balay   MAT_FACTOR_ILU,
2019371c9d4SSatish Balay   MAT_FACTOR_ICC,
2029371c9d4SSatish Balay   MAT_FACTOR_ILUDT,
2039371c9d4SSatish Balay   MAT_FACTOR_QR,
2049371c9d4SSatish Balay   MAT_FACTOR_NUM_TYPES
2059371c9d4SSatish Balay } MatFactorType;
206014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[];
207e92e720dSBarry Smith 
208ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *);
209ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *);
210f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *);
211edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 15, 0, "MatFactorGetCanUseOrdering()", ) static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b)
212d71ae5a4SJacob Faibussowitsch {
2139371c9d4SSatish Balay   return MatFactorGetCanUseOrdering(A, b);
2149371c9d4SSatish Balay }
215ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *);
216014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *);
2177abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType);
2188434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode(MatSolverFn)(Mat, MatFactorType, Mat *);
2198434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatSolverFn *MatSolverFunction;
22007e0ed13SBarry Smith 
2218434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFn *);
2228434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFn **);
223edd03b47SJacob Faibussowitsch typedef MatSolverType       MatSolverPackage PETSC_DEPRECATED_TYPEDEF(3, 9, 0, "MatSolverType", );
2248434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeRegister()", ) static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFn *f)
225d71ae5a4SJacob Faibussowitsch {
2269371c9d4SSatish Balay   return MatSolverTypeRegister(stype, mtype, ftype, f);
2279371c9d4SSatish Balay }
2288434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeGet()", ) static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFn **f)
229d71ae5a4SJacob Faibussowitsch {
2309371c9d4SSatish Balay   return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f);
2319371c9d4SSatish Balay }
2329989ab13SBarry Smith 
2334222ddf1SHong Zhang /*E
23495bd0b28SBarry Smith     MatProductType - indicates what type of matrix product to compute
2354222ddf1SHong Zhang 
2362ef1f0ffSBarry Smith     Values:
2372ef1f0ffSBarry Smith +  `MATPRODUCT_AB`   - product of two matrices
2382ef1f0ffSBarry Smith .  `MATPRODUCT_AtB`  - product of the transpose of a given matrix with a matrix
2392ef1f0ffSBarry Smith .  `MATPRODUCT_ABt`  - product of a matrix with the transpose of another given matrix
2402ef1f0ffSBarry Smith .  `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself
2412ef1f0ffSBarry Smith .  `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix
2422ef1f0ffSBarry Smith -  `MATPRODUCT_ABC`  - the product of three matrices
2432ef1f0ffSBarry Smith 
24416a05f60SBarry Smith     Level: beginner
24516a05f60SBarry Smith 
2461cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatProductSetType()`
2474222ddf1SHong Zhang E*/
2489371c9d4SSatish Balay typedef enum {
2499371c9d4SSatish Balay   MATPRODUCT_UNSPECIFIED = 0,
2509371c9d4SSatish Balay   MATPRODUCT_AB,
2519371c9d4SSatish Balay   MATPRODUCT_AtB,
2529371c9d4SSatish Balay   MATPRODUCT_ABt,
2539371c9d4SSatish Balay   MATPRODUCT_PtAP,
2549371c9d4SSatish Balay   MATPRODUCT_RARt,
2559371c9d4SSatish Balay   MATPRODUCT_ABC
2569371c9d4SSatish Balay } MatProductType;
257544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[];
2584222ddf1SHong Zhang 
2594222ddf1SHong Zhang /*J
2604222ddf1SHong Zhang     MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation
2614222ddf1SHong Zhang 
2624222ddf1SHong Zhang    Level: beginner
2634222ddf1SHong Zhang 
2641cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType`
2654222ddf1SHong Zhang J*/
2664222ddf1SHong Zhang typedef const char *MatProductAlgorithm;
2673e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT         "default"
2683e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED          "sorted"
2693e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE        "scalable"
2703e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST    "scalable_fast"
2713e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP            "heap"
2723e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP           "btheap"
2733e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED     "llcondensed"
2743e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE        "rowmerge"
2753e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT    "outerproduct"
2763e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB             "at*b"
2773e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP             "rap"
2783e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE     "nonscalable"
2793e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI          "seqmpi"
2803e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND         "backend"
2813e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING     "overlapping"
2823e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED          "merged"
2833e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE       "allatonce"
2843e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged"
2853e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV      "allgatherv"
2863e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC          "cyclic"
2873e662e0bSHong Zhang #if defined(PETSC_HAVE_HYPRE)
2883e662e0bSHong Zhang   #define MATPRODUCTALGORITHMHYPRE "hypre"
2893e662e0bSHong Zhang #endif
2904222ddf1SHong Zhang 
2914222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *);
2924222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat);
2934222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType);
2944222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm);
2958fcac130SJose E. Roman PETSC_EXTERN PetscErrorCode MatProductGetAlgorithm(Mat, MatProductAlgorithm *);
2964222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal);
2974222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat);
2984222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat);
2994222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat);
3004222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat);
3014417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat);
3026718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer);
303c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *);
304c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *);
3054222ddf1SHong Zhang 
306c06d978dSMatthew Knepley /* Logging support */
3070700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */
308014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID;
309335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID;
310014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID;
311014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID;
312014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID;
313014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID;
314014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID;
315014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID;
316c06d978dSMatthew Knepley 
317ceb03754SKris Buschelman /*E
3182ef1f0ffSBarry Smith    MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions
319cf37664fSBarry Smith    are to be reused to store the new matrix values.
320cf37664fSBarry Smith 
3212ef1f0ffSBarry Smith    Values:
3222ef1f0ffSBarry Smith +  `MAT_INITIAL_MATRIX` - create a new matrix
3232ef1f0ffSBarry Smith .  `MAT_REUSE_MATRIX`   - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX`
3242ef1f0ffSBarry Smith .  `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions)
3252ef1f0ffSBarry Smith -  `MAT_IGNORE_MATRIX`  - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions)
326ceb03754SKris Buschelman 
327ceb03754SKris Buschelman     Level: beginner
328ceb03754SKris Buschelman 
3291cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()`
330ceb03754SKris Buschelman E*/
3319371c9d4SSatish Balay typedef enum {
3329371c9d4SSatish Balay   MAT_INITIAL_MATRIX,
3339371c9d4SSatish Balay   MAT_REUSE_MATRIX,
3349371c9d4SSatish Balay   MAT_IGNORE_MATRIX,
3359371c9d4SSatish Balay   MAT_INPLACE_MATRIX
3369371c9d4SSatish Balay } MatReuse;
337ceb03754SKris Buschelman 
3385494a064SHong Zhang /*E
3392ef1f0ffSBarry Smith     MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()`
3402ef1f0ffSBarry Smith     include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`.
3415494a064SHong Zhang 
3422ef1f0ffSBarry Smith     Values:
3432ef1f0ffSBarry Smith +  `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values
3442ef1f0ffSBarry Smith -  `MAT_GET_VALUES`        - copy the matrix values
3452ef1f0ffSBarry Smith 
34695bd0b28SBarry Smith     Level: developer
34795bd0b28SBarry Smith 
3482ef1f0ffSBarry Smith     Developer Note:
3492ef1f0ffSBarry Smith     Why is not just a boolean used for this information?
3502ef1f0ffSBarry Smith 
3511cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()`
3525494a064SHong Zhang E*/
3539371c9d4SSatish Balay typedef enum {
3549371c9d4SSatish Balay   MAT_DO_NOT_GET_VALUES,
3559371c9d4SSatish Balay   MAT_GET_VALUES
3569371c9d4SSatish Balay } MatCreateSubMatrixOption;
3575494a064SHong Zhang 
358607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void);
3594bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatFinalizePackage(void);
360c06d978dSMatthew Knepley 
361014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *);
36277433607SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFromOptions(MPI_Comm, const char *, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
363014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt);
36419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType);
3650d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *);
3660d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType);
367014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat);
368fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]);
369bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat));
37023bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]);
371014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]);
37226cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]);
37326cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]);
374014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]);
375014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]);
37684d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool);
377f69a0ea3SMatthew Knepley 
378140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList;
379140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList;
380140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList;
38128988994SBarry Smith 
3823b224e63SBarry Smith /*E
383aa6c7ce3SBarry Smith    MatStructure - Indicates if two matrices have the same nonzero structure
3843b224e63SBarry Smith 
3852ef1f0ffSBarry Smith    Values:
3862ef1f0ffSBarry Smith +  `SAME_NONZERO_PATTERN`      - the two matrices have identical nonzero patterns
3872ef1f0ffSBarry Smith .  `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns
3882ef1f0ffSBarry Smith .  `SUBSET_NONZERO_PATTERN`    - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix
3892ef1f0ffSBarry Smith -  `UNKNOWN_NONZERO_PATTERN`   - there is no known relationship between the nonzero patterns. In this case the implementations
3902ef1f0ffSBarry Smith                                  may try to detect a relationship to optimize the operation
391531d0c6aSBarry Smith 
39216a05f60SBarry Smith    Level: beginner
39316a05f60SBarry Smith 
394af27ebaaSBarry Smith    Note:
395af27ebaaSBarry Smith    Certain matrix operations (such as `MatAXPY()`) can run much faster if the sparsity pattern of the matrices are the same. But actually determining if
396af27ebaaSBarry Smith    the patterns are the same may be costly. This provides a way for users who know something about the sparsity patterns to provide this information
397af27ebaaSBarry Smith    to certain PETSc routines.
398af27ebaaSBarry Smith 
3991cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()`
4003b224e63SBarry Smith E*/
4019371c9d4SSatish Balay typedef enum {
4029371c9d4SSatish Balay   DIFFERENT_NONZERO_PATTERN,
4039371c9d4SSatish Balay   SUBSET_NONZERO_PATTERN,
4049371c9d4SSatish Balay   SAME_NONZERO_PATTERN,
4059371c9d4SSatish Balay   UNKNOWN_NONZERO_PATTERN
4069371c9d4SSatish Balay } MatStructure;
407d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[];
4083b224e63SBarry Smith 
4099779e05dSSatish Balay #if defined PETSC_HAVE_MKL_SPARSE
410ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
411ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
41280095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
413ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
41480095d54SIrina Sokolova #endif
415cd929ea3SAlp Dener 
4164bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
4174bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
4184bf303faSJacob Faibussowitsch 
419d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
420d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
421d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]);
422d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
42307e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *);
42407e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *);
42507e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *);
42607e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt);
427b921024eSHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *);
42880095d54SIrina Sokolova 
4294bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
4304bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
431fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
432fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetSeqSELL(Mat, Mat *, Mat *, const PetscInt *[]);
4334bf303faSJacob Faibussowitsch 
434014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
435014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
436014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
437014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
438014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4398f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4406a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]);
441014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *);
4423b00a383SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *);
4433b00a383SHong Zhang 
444014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
445014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
446014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4477e8381f9SStefano Zampini 
448e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]);
44982a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]);
4507e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode);
451d21a29f3SJed Brown 
452014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *);
453014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
454d21a29f3SJed Brown 
455014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
456014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
45738f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
458014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4594cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]);
460dfb205c3SBarry Smith 
461014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *);
462c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *);
463014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *);
464c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *);
465986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *);
466267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *);
467bcf2175cSMatthew Knepley PETSC_EXTERN PetscErrorCode MatLRCSetMats(Mat, Mat, Mat, Vec, Mat);
468c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *);
469014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
470014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
471c0cdd4a1SDahai Guo 
472014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *);
473014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter);
474014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *);
475014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *);
476014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat);
477014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat);
4789371c9d4SSatish Balay typedef enum {
4799371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_RIGHT,
4809371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_LEFT
4819371c9d4SSatish Balay } MatCompositeMergeType;
4828c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType);
483014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *);
4840da935d5SPierre Jolivet /*E
4850da935d5SPierre Jolivet     MatCompositeType - indicates what type of `MATCOMPOSITE` is used
4860da935d5SPierre Jolivet 
4870da935d5SPierre Jolivet     Values:
4880da935d5SPierre Jolivet +  `MAT_COMPOSITE_ADDITIVE`       - sum of matrices (default)
4890da935d5SPierre Jolivet -  `MAT_COMPOSITE_MULTIPLICATIVE` - product of matrices
4900da935d5SPierre Jolivet 
4910da935d5SPierre Jolivet     Level: beginner
4920da935d5SPierre Jolivet 
4930da935d5SPierre Jolivet .seealso: [](ch_matrices), `MATCOMPOSITE`, `MatCompositeSetType()`, `MatCompositeGetType()`
4940da935d5SPierre Jolivet E*/
4959371c9d4SSatish Balay typedef enum {
4969371c9d4SSatish Balay   MAT_COMPOSITE_ADDITIVE,
4979371c9d4SSatish Balay   MAT_COMPOSITE_MULTIPLICATIVE
4989371c9d4SSatish Balay } MatCompositeType;
499014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType);
5006dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *);
5013b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure);
5023b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *);
5036d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *);
5048b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *);
50503049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *);
5066d7c1e57SBarry Smith 
50719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *);
508014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *);
509dedccee8SHong Zhang 
510014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *);
5118060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *);
512d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *);
51306511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *);
514fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *);
51565f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *);
51654e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *);
51754e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS);
518014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *);
5193423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *);
520345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatCreateDiagonal(Vec, Mat *);
521345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetDiagonal(Mat, Vec *);
522345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreDiagonal(Mat, Vec *);
523345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetInverseDiagonal(Mat, Vec *);
524345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreInverseDiagonal(Mat, Vec *);
5251472f72bSBarry Smith 
526978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE)
527d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
528978814f1SStefano Zampini #endif
529978814f1SStefano Zampini 
530014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]);
531ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]);
5321d6018f0SLisandro Dalcin 
533846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat);
534014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat);
535014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *);
536e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *);
53721c89e3eSBarry Smith 
538014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat);
539014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat);
540014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat);
541014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *);
542014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *);
543713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **);
5440da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *);
545479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat);
5468a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *);
54720c04d79SPierre Jolivet PETSC_EXTERN PetscErrorCode MatComputeVariableBlockEnvelope(Mat);
54899cafbc1SBarry Smith 
549014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
5508a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode);
551014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
552014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]);
553014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]);
554014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]);
55573a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom);
55684cb2905SBarry Smith 
5572ef4de8bSBarry Smith /*S
5582ef1f0ffSBarry Smith    MatStencil - Data structure (C struct) for storing information about rows and
5592ef1f0ffSBarry Smith    columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()`
56062ef0227SBarry Smith 
5612ef1f0ffSBarry Smith    Level: beginner
5622ef1f0ffSBarry Smith 
5632ef1f0ffSBarry Smith    Notes:
56462ef0227SBarry Smith    The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored).
56515229ffcSPierre Jolivet    The c represents the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored.
56662ef0227SBarry Smith 
56787497f52SBarry Smith    For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`.
568be479b30SJed Brown 
5692ef1f0ffSBarry Smith    For staggered grids, see `DMStagStencil`
5702ef4de8bSBarry Smith 
5712ef1f0ffSBarry Smith    Fortran Note:
5722ef1f0ffSBarry Smith    See `MatSetValuesStencil()` for details.
5732ef4de8bSBarry Smith 
5741cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`,
5752ef1f0ffSBarry Smith           `DMStagStencil`
5762ef4de8bSBarry Smith S*/
577435da068SBarry Smith typedef struct {
578c1ac3661SBarry Smith   PetscInt k, j, i, c;
579435da068SBarry Smith } MatStencil;
5802ef4de8bSBarry Smith 
581014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
582014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
583014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt);
584435da068SBarry Smith 
585d91e6319SBarry Smith /*E
5862ef1f0ffSBarry Smith     MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use
587d91e6319SBarry Smith 
5882ef1f0ffSBarry Smith     Values:
5892ef1f0ffSBarry Smith +   `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix
5902ef1f0ffSBarry Smith -   `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted
5912ef1f0ffSBarry Smith 
59216a05f60SBarry Smith     Level: beginner
59316a05f60SBarry Smith 
5941cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()`
595d91e6319SBarry Smith E*/
5969371c9d4SSatish Balay typedef enum {
5979371c9d4SSatish Balay   MAT_FLUSH_ASSEMBLY = 1,
5989371c9d4SSatish Balay   MAT_FINAL_ASSEMBLY = 0
5999371c9d4SSatish Balay } MatAssemblyType;
6004f58015eSStefano Zampini 
601014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType);
602014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType);
603014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *);
6044f9c727eSBarry Smith 
605d91e6319SBarry Smith /*E
6062ef1f0ffSBarry Smith    MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage
607d91e6319SBarry Smith 
608d91e6319SBarry Smith    Level: beginner
609d91e6319SBarry Smith 
6102ef1f0ffSBarry Smith    Note:
6112ef1f0ffSBarry Smith    See `MatSetOption()` for the use of the options
6122ef1f0ffSBarry Smith 
6132ef1f0ffSBarry Smith    Developer Note:
61495452b02SPatrick Sanan    Entries that are negative need not be called collectively by all processes.
615382164b0SBarry Smith 
6161cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetOption()`
617d91e6319SBarry Smith E*/
6189371c9d4SSatish Balay typedef enum {
6199371c9d4SSatish Balay   MAT_OPTION_MIN                  = -3,
620c5e4d11fSDmitry Karpeev   MAT_UNUSED_NONZERO_LOCATION_ERR = -2,
62192d4d306SBarry Smith   MAT_ROW_ORIENTED                = -1,
622382164b0SBarry Smith   MAT_SYMMETRIC                   = 1,
623382164b0SBarry Smith   MAT_STRUCTURALLY_SYMMETRIC      = 2,
6248c78258cSHong Zhang   MAT_FORCE_DIAGONAL_ENTRIES      = 3,
625382164b0SBarry Smith   MAT_IGNORE_OFF_PROC_ENTRIES     = 4,
626382164b0SBarry Smith   MAT_USE_HASH_TABLE              = 5,
627382164b0SBarry Smith   MAT_KEEP_NONZERO_PATTERN        = 6,
628382164b0SBarry Smith   MAT_IGNORE_ZERO_ENTRIES         = 7,
629382164b0SBarry Smith   MAT_USE_INODES                  = 8,
630382164b0SBarry Smith   MAT_HERMITIAN                   = 9,
631382164b0SBarry Smith   MAT_SYMMETRY_ETERNAL            = 10,
632c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_LOCATION_ERR    = 11,
633382164b0SBarry Smith   MAT_IGNORE_LOWER_TRIANGULAR     = 12,
634382164b0SBarry Smith   MAT_ERROR_LOWER_TRIANGULAR      = 13,
635382164b0SBarry Smith   MAT_GETROW_UPPERTRIANGULAR      = 14,
636382164b0SBarry Smith   MAT_SPD                         = 15,
63792d4d306SBarry Smith   MAT_NO_OFF_PROC_ZERO_ROWS       = 16,
63892d4d306SBarry Smith   MAT_NO_OFF_PROC_ENTRIES         = 17,
63992d4d306SBarry Smith   MAT_NEW_NONZERO_LOCATIONS       = 18,
640c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_ALLOCATION_ERR  = 19,
641c5e4d11fSDmitry Karpeev   MAT_SUBSET_OFF_PROC_ENTRIES     = 20,
642c10200c1SHong Zhang   MAT_SUBMAT_SINGLEIS             = 21,
643957cac9fSHong Zhang   MAT_STRUCTURE_ONLY              = 22,
644071fcb05SBarry Smith   MAT_SORTED_FULL                 = 23,
6451a2c6b5cSJunchao Zhang   MAT_FORM_EXPLICIT_TRANSPOSE     = 24,
646b94d7dedSBarry Smith   MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25,
647b94d7dedSBarry Smith   MAT_SPD_ETERNAL                 = 26,
6489371c9d4SSatish Balay   MAT_OPTION_MAX                  = 27
6499371c9d4SSatish Balay } MatOption;
650e057df02SPaul Mullowney 
6510f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions;
652014dd563SJed Brown PETSC_EXTERN PetscErrorCode     MatSetOption(Mat, MatOption, PetscBool);
6537d68702bSBarry Smith PETSC_EXTERN PetscErrorCode     MatGetOption(Mat, MatOption, PetscBool *);
654856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode     MatPropagateSymmetryOptions(Mat, Mat);
65519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode     MatGetType(Mat, MatType *);
65684cb2905SBarry Smith 
657014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
658014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
659014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
660014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRowUpperTriangular(Mat);
661014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRowUpperTriangular(Mat);
662014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetColumnVector(Mat, Vec, PetscInt);
6638c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArray(Mat, PetscScalar *[]);
6648f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]);
665d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]);
6668c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArray(Mat, PetscScalar *[]);
6678f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]);
668d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]);
66921e72a00SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *);
670bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
6714099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetType(Mat, MatType);
672ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode    MatSeqAIJKron(Mat, Mat, MatReuse, Mat *);
673388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode    MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *));
6744099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList;
675cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJGetArray(Mat, PetscScalar *[]);
676cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJRestoreArray(Mat, PetscScalar *[]);
6778397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJGetArray(Mat, PetscScalar *[]);
6788397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]);
6798c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArray(Mat, PetscScalar *[]);
6808c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArray(Mat, PetscScalar *[]);
681d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDensePlaceArray(Mat, const PetscScalar[]);
682d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseReplaceArray(Mat, const PetscScalar[]);
683d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseResetArray(Mat);
6848572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArrayRead(Mat, const PetscScalar *[]);
6858572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayRead(Mat, const PetscScalar *[]);
6866947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWrite(Mat, PetscScalar *[]);
6876947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWrite(Mat, PetscScalar *[]);
688cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *);
689cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]);
690cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *);
691cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]);
692cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *);
693cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]);
694014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSize(Mat, PetscInt *);
695014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSize(Mat, PetscInt);
696014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSizes(Mat, PetscInt *, PetscInt *);
697014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizes(Mat, PetscInt, PetscInt);
69833d57670SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizesFromMats(Mat, Mat, Mat);
6990da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode    MatSetVariableBlockSizes(Mat, PetscInt, PetscInt *);
7000da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode    MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt **);
7010da83c2eSBarry Smith 
70286aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]);
70386aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]);
7046947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *);
7056947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *);
7066947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *);
7076947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *);
7086947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *);
7096947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *);
710a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
7115ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *);
7121620fd73SBarry Smith 
713014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec);
714014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec);
715014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec);
716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec);
717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec);
718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *);
719014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *);
720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec);
721014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec);
722014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat);
723bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat);
724eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat);
725f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec);
726f5edf698SHong Zhang 
727d91e6319SBarry Smith /*E
728d91e6319SBarry Smith   MatDuplicateOption - Indicates if a duplicated sparse matrix should have
729d91e6319SBarry Smith   its numerical values copied over or just its nonzero structure.
730d91e6319SBarry Smith 
7312ef1f0ffSBarry Smith   Values:
7322ef1f0ffSBarry Smith + `MAT_DO_NOT_COPY_VALUES`    - Create a matrix using the same nonzero pattern as the original matrix,
7332ef1f0ffSBarry Smith                                 with zeros for the numerical values
7342ef1f0ffSBarry Smith . `MAT_COPY_VALUES`           - Create a matrix with the same nonzero pattern as the original matrix
7352ef1f0ffSBarry Smith                                 and with the same numerical values.
7362ef1f0ffSBarry Smith - `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix
7372ef1f0ffSBarry Smith                                 and does not copy it, using zeros for the numerical values. The parent and
7382ef1f0ffSBarry Smith                                 child matrices will share their index (i and j) arrays, and you cannot
7392ef1f0ffSBarry Smith                                 insert new nonzero entries into either matrix
7400018da39SRichard Tran Mills 
74116a05f60SBarry Smith   Level: beginner
74216a05f60SBarry Smith 
74387497f52SBarry Smith   Note:
74487497f52SBarry Smith   Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in
74587497f52SBarry Smith   this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified.
74670dcbbb9SBarry Smith 
7471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicate()`
748d91e6319SBarry Smith E*/
7499371c9d4SSatish Balay typedef enum {
7509371c9d4SSatish Balay   MAT_DO_NOT_COPY_VALUES,
7519371c9d4SSatish Balay   MAT_COPY_VALUES,
7529371c9d4SSatish Balay   MAT_SHARE_NONZERO_PATTERN
7539371c9d4SSatish Balay } MatDuplicateOption;
7542e8a6d31SBarry Smith 
75519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *);
756014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *);
75794a9d846SBarry Smith 
758014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure);
759014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer);
760014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *);
761014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *);
762014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *);
763014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *);
764014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *);
765b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *);
766b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *);
767014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *);
768014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer);
7697b80b807SBarry Smith 
7701a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7711a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7721a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7731a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
774d4fbbf0eSBarry Smith 
775d91e6319SBarry Smith /*S
77687497f52SBarry Smith    MatInfo - Context of matrix information, used with `MatGetInfo()`
777d91e6319SBarry Smith 
778d91e6319SBarry Smith    Level: intermediate
779d91e6319SBarry Smith 
7802ef1f0ffSBarry Smith    Fortran Note:
7812ef1f0ffSBarry Smith    Information is stored as a double-precision array of dimension `MAT_INFO_SIZE`
7822ef1f0ffSBarry Smith 
7831cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetInfo()`, `MatInfoType`
784d91e6319SBarry Smith S*/
7854e220ebcSLois Curfman McInnes typedef struct {
786b0a32e0cSBarry Smith   PetscLogDouble block_size;                          /* block size */
787b0a32e0cSBarry Smith   PetscLogDouble nz_allocated, nz_used, nz_unneeded;  /* number of nonzeros */
788b0a32e0cSBarry Smith   PetscLogDouble memory;                              /* memory allocated */
789b0a32e0cSBarry Smith   PetscLogDouble assemblies;                          /* number of matrix assemblies called */
790b0a32e0cSBarry Smith   PetscLogDouble mallocs;                             /* number of mallocs during MatSetValues() */
791b0a32e0cSBarry Smith   PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */
792b0a32e0cSBarry Smith   PetscLogDouble factor_mallocs;                      /* number of mallocs during factorization */
7934e220ebcSLois Curfman McInnes } MatInfo;
7944e220ebcSLois Curfman McInnes 
795d9274352SBarry Smith /*E
796d9274352SBarry Smith     MatInfoType - Indicates if you want information about the local part of the matrix,
797d9274352SBarry Smith     the entire parallel matrix or the maximum over all the local parts.
798d9274352SBarry Smith 
7992ef1f0ffSBarry Smith     Values:
8002ef1f0ffSBarry Smith +   `MAT_LOCAL`      - values for each MPI process part of the matrix
8012ef1f0ffSBarry Smith .   `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes
8022ef1f0ffSBarry Smith -   `MAT_GLOBAL_SUM` - sum of each value over all MPI processes
803d9274352SBarry Smith 
80416a05f60SBarry Smith     Level: beginner
80516a05f60SBarry Smith 
8061cc06b55SBarry Smith .seealso: [](ch_matrices), `MatGetInfo()`, `MatInfo`
807d9274352SBarry Smith E*/
8089371c9d4SSatish Balay typedef enum {
8099371c9d4SSatish Balay   MAT_LOCAL      = 1,
8109371c9d4SSatish Balay   MAT_GLOBAL_MAX = 2,
8119371c9d4SSatish Balay   MAT_GLOBAL_SUM = 3
8129371c9d4SSatish Balay } MatInfoType;
813014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *);
814014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec);
815014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]);
816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]);
817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]);
818eede4a3fSMark Adams PETSC_EXTERN PetscErrorCode MatGetRowSumAbs(Mat, Vec);
819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]);
820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec);
821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *);
8227fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *);
8237fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat);
824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *);
825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *);
826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec);
827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode);
828a52676ecSHong Zhang 
829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *);
830014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *);
831014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *);
832014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
833014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
834e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
835e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
836a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
837a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
838cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
8394222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
840447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
84186919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *);
8427b80b807SBarry Smith 
843014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *);
844014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *);
845857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *);
846857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *);
847857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *);
848857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *);
849857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *);
850857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *);
851857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *);
852014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat);
8531b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat);
854014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
855014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec);
856014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
857014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
858014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
859014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec);
8607b80b807SBarry Smith 
861014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *);
862014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *);
863014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *);
864014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **);
865014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *);
866014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **);
867566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *);
8685ef9f2a5SBarry Smith 
8697dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
870edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrices()", ) static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
871d71ae5a4SJacob Faibussowitsch {
8729371c9d4SSatish Balay   return MatCreateSubMatrices(mat, n, irow, icol, scall, submat);
8739371c9d4SSatish Balay }
8747dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
875edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatricesMPI()", ) static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
876d71ae5a4SJacob Faibussowitsch {
8779371c9d4SSatish Balay   return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat);
8789371c9d4SSatish Balay }
879014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]);
880df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]);
8817dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *);
882edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrix()", ) static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat)
883d71ae5a4SJacob Faibussowitsch {
8849371c9d4SSatish Balay   return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat);
8859371c9d4SSatish Balay }
886014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *);
887014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *);
888014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *);
889014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *);
8907b80b807SBarry Smith 
891014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *);
892014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *);
893014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat);
894014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *);
8958a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *);
896014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
897ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *);
898f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *);
899014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *);
900014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]);
9018efafbd8SBarry Smith 
902014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt);
903aa1e27eaSFande Kong PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov);
904d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool);
9057b80b807SBarry Smith 
906014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
90722440eb1SKris Buschelman 
9087bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
9092df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
9107bab7c10SHong Zhang 
911014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *);
912014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *);
91322440eb1SKris Buschelman 
914014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
915014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *);
916bc011b1eSHong Zhang 
917014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure);
918014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure);
9191c741599SHong Zhang 
920014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar);
921014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar);
9227b80b807SBarry Smith 
923014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping);
924014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
925a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *);
92681fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout);
927014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
928014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
929014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
930014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
931e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
932014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
933014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
934052efed2SBarry Smith 
935014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt);
936014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *);
93790f02eecSBarry Smith 
938014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec);
939014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec);
940014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec);
94130b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *);
94230b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *);
94330b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *);
9442a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *);
945edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 6, 0, "MatCreateVecs()", ) static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y)
946d71ae5a4SJacob Faibussowitsch {
9479371c9d4SSatish Balay   return MatCreateVecs(mat, x, y);
9489371c9d4SSatish Balay }
94953cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *);
950014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *);
951014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *);
9523a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *);
9539c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *);
954bd481603SBarry Smith 
955c8d6c325SJunchao Zhang /*@C
9561620fd73SBarry Smith    MatSetValue - Set a single entry into a matrix.
9571620fd73SBarry Smith 
958e1c5b2e2SJose E. Roman    Not Collective
959a9834a7dSSatish Balay 
9601620fd73SBarry Smith    Input Parameters:
961c8d6c325SJunchao Zhang +  mat  - the matrix
96216a05f60SBarry Smith .  i    - the row location of the entry
96316a05f60SBarry Smith .  j    - the column location of the entry
96416a05f60SBarry Smith .  va   - the value to insert
96587497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
9661620fd73SBarry Smith 
9671620fd73SBarry Smith    Level: beginner
9681620fd73SBarry Smith 
96995bd0b28SBarry Smith    Notes:
97095bd0b28SBarry Smith    This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()`
97195bd0b28SBarry Smith    MUST be called after all calls to `MatSetValue()` have been completed.
97295bd0b28SBarry Smith 
9732ef1f0ffSBarry Smith    For efficiency one should use `MatSetValues()` and set several values simultaneously.
9742ef1f0ffSBarry Smith 
975b43fc34aSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `InsertMode`, `MatGetValue()`, `MatSetValues()`,
9762ef1f0ffSBarry Smith           `MatSetValueLocal()`, `MatSetValuesLocal()`
977c8d6c325SJunchao Zhang @*/
978c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValue(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
979d71ae5a4SJacob Faibussowitsch {
980c8d6c325SJunchao Zhang   return MatSetValues(mat, 1, &i, 1, &j, &va, mode);
9819371c9d4SSatish Balay }
9821620fd73SBarry Smith 
983e5e5a7b5SPatrick Sanan /*@C
984e5e5a7b5SPatrick Sanan    MatGetValue - Gets a single value from a matrix
9851620fd73SBarry Smith 
986e5e5a7b5SPatrick Sanan    Not Collective; can only return a value owned by the given process
987e5e5a7b5SPatrick Sanan 
988e5e5a7b5SPatrick Sanan    Input Parameters:
989e5e5a7b5SPatrick Sanan +  mat - the matrix
990e5e5a7b5SPatrick Sanan .  row - the row location of the entry
991e5e5a7b5SPatrick Sanan -  col - the column location of the entry
992e5e5a7b5SPatrick Sanan 
993e5e5a7b5SPatrick Sanan    Output Parameter:
994e5e5a7b5SPatrick Sanan .  va - the value
995e5e5a7b5SPatrick Sanan 
9962ef1f0ffSBarry Smith    Level: advanced
9972ef1f0ffSBarry Smith 
998e5e5a7b5SPatrick Sanan    Notes:
999b43fc34aSPierre Jolivet    The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd()` before this call
10002ef1f0ffSBarry Smith 
100187497f52SBarry Smith    For efficiency one should use `MatGetValues()` and get several values simultaneously.
1002e5e5a7b5SPatrick Sanan 
100387497f52SBarry Smith    See notes for `MatGetValues()`.
1004e5e5a7b5SPatrick Sanan 
1005b43fc34aSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()`
1006e5e5a7b5SPatrick Sanan @*/
1007d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va)
1008d71ae5a4SJacob Faibussowitsch {
10099371c9d4SSatish Balay   return MatGetValues(mat, 1, &row, 1, &col, va);
10109371c9d4SSatish Balay }
1011e5e5a7b5SPatrick Sanan 
1012c8d6c325SJunchao Zhang /*@C
10132ef1f0ffSBarry Smith    MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes.
1014e5e5a7b5SPatrick Sanan 
1015e5e5a7b5SPatrick Sanan    Not Collective
1016e5e5a7b5SPatrick Sanan 
1017e5e5a7b5SPatrick Sanan    Input Parameters:
1018c8d6c325SJunchao Zhang +  mat  - the matrix
101916a05f60SBarry Smith .  i    - the row location of the entry
102016a05f60SBarry Smith .  j    - the column location of the entry
102116a05f60SBarry Smith .  va   - the value to insert
102287497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
1023e5e5a7b5SPatrick Sanan 
10242ef1f0ffSBarry Smith    Level: intermediate
10252ef1f0ffSBarry Smith 
1026e5e5a7b5SPatrick Sanan    Notes:
102787497f52SBarry Smith    For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously.
1028e5e5a7b5SPatrick Sanan 
102987497f52SBarry Smith    See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used.
1030e5e5a7b5SPatrick Sanan 
10311cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSetValue()`, `MatSetValuesLocal()`
1032c8d6c325SJunchao Zhang @*/
1033c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValueLocal(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
1034d71ae5a4SJacob Faibussowitsch {
1035c8d6c325SJunchao Zhang   return MatSetValuesLocal(mat, 1, &i, 1, &j, &va, mode);
10369371c9d4SSatish Balay }
10371620fd73SBarry Smith 
10381620fd73SBarry Smith /*MC
1039d0609cedSBarry Smith    MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per
1040bd481603SBarry Smith    row in a matrix providing the data that one can use to correctly preallocate the matrix.
1041bd481603SBarry Smith 
1042bd481603SBarry Smith    Synopsis:
1043aaa7dc30SBarry Smith    #include <petscmat.h>
1044d0609cedSBarry Smith    PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz)
1045bd481603SBarry Smith 
1046d083f849SBarry Smith    Collective
1047bd481603SBarry Smith 
1048bd481603SBarry Smith    Input Parameters:
1049bd481603SBarry Smith +  comm  - the communicator that will share the eventually allocated matrix
1050859fcb39SBarry Smith .  nrows - the number of LOCAL rows in the matrix
1051859fcb39SBarry Smith -  ncols - the number of LOCAL columns in the matrix
1052bd481603SBarry Smith 
1053bd481603SBarry Smith    Output Parameters:
1054bd481603SBarry Smith +  dnz - the array that will be passed to the matrix preallocation routines
1055a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1056bd481603SBarry Smith 
10572ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1058bd481603SBarry Smith 
1059bd481603SBarry Smith    Notes:
10602ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
10612ef1f0ffSBarry Smith    the use of this routine
10622ef1f0ffSBarry Smith 
1063d0609cedSBarry Smith    This is a macro that handles its own error checking, it does not return an error code.
1064d0609cedSBarry Smith 
10652ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1066bd481603SBarry Smith 
10672ef1f0ffSBarry Smith    Developer Note:
1068af27ebaaSBarry Smith    This is a MACRO, not a function, because it has a leading { that is closed by `PetscPreallocateFinalize()`.
1069bd481603SBarry Smith 
10701cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1071db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1072bd481603SBarry Smith M*/
10739371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \
10749371c9d4SSatish Balay   do { \
10753ba16761SJacob Faibussowitsch     PetscInt              __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \
10763ba16761SJacob Faibussowitsch     PetscInt PETSC_UNUSED __start; \
10779566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \
10789566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \
10799371c9d4SSatish Balay     __start = __end - __ncols; \
10809371c9d4SSatish Balay     (void)__start; \
10819566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \
10825f80ce2aSJacob Faibussowitsch   __rstart -= __nrows
10837c922b88SBarry Smith 
1084edd03b47SJacob Faibussowitsch #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateBegin()", ) MatPreallocateBegin(__VA_ARGS__)
1085d0609cedSBarry Smith 
1086bd481603SBarry Smith /*MC
1087bd481603SBarry Smith    MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1088bd481603SBarry Smith    inserted using a local number of the rows and columns
1089bd481603SBarry Smith 
1090bd481603SBarry Smith    Synopsis:
1091aaa7dc30SBarry Smith    #include <petscmat.h>
1092c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1093bd481603SBarry Smith 
1094bd481603SBarry Smith    Not Collective
1095bd481603SBarry Smith 
1096bd481603SBarry Smith    Input Parameters:
1097784ac674SJed Brown +  map   - the row mapping from local numbering to global numbering
1098bd481603SBarry Smith .  nrows - the number of rows indicated
10991d73ed98SBarry Smith .  rows  - the indices of the rows
1100784ac674SJed Brown .  cmap  - the column mapping from local to global numbering
1101bd481603SBarry Smith .  ncols - the number of columns in the matrix
1102bd481603SBarry Smith .  cols  - the columns indicated
1103bd481603SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1104a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1105bd481603SBarry Smith 
11062ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1107bd481603SBarry Smith 
1108bd481603SBarry Smith    Notes:
11092ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11102ef1f0ffSBarry Smith    the use of this routine
1111bd481603SBarry Smith 
11122ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1113bd481603SBarry Smith 
11141cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1115db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()`
1116bd481603SBarry Smith M*/
111794bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11189371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1119c4f061fbSSatish Balay 
1120bd481603SBarry Smith /*MC
1121c1154cd5SBarry Smith    MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1122c1154cd5SBarry Smith    inserted using a local number of the rows and columns. This version removes any duplicate columns in cols
1123c1154cd5SBarry Smith 
1124c1154cd5SBarry Smith    Synopsis:
1125c1154cd5SBarry Smith    #include <petscmat.h>
1126c1154cd5SBarry Smith    PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1127c1154cd5SBarry Smith 
1128c1154cd5SBarry Smith    Not Collective
1129c1154cd5SBarry Smith 
1130c1154cd5SBarry Smith    Input Parameters:
1131c1154cd5SBarry Smith +  map   - the row mapping from local numbering to global numbering
1132c1154cd5SBarry Smith .  nrows - the number of rows indicated
1133c1154cd5SBarry Smith .  rows  - the indices of the rows (these values are mapped to the global values)
1134c1154cd5SBarry Smith .  cmap  - the column mapping from local to global numbering
1135c1154cd5SBarry Smith .  ncols - the number of columns in the matrix   (this value will be changed if duplicate columns are found)
1136c1154cd5SBarry Smith .  cols  - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed)
1137c1154cd5SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1138a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1139c1154cd5SBarry Smith 
11402ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1141c1154cd5SBarry Smith 
1142c1154cd5SBarry Smith    Notes:
11432ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11442ef1f0ffSBarry Smith    the use of this routine
1145c1154cd5SBarry Smith 
11462ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1147c1154cd5SBarry Smith 
11481cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1149db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1150c1154cd5SBarry Smith M*/
115194bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11529371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1153c1154cd5SBarry Smith 
1154c1154cd5SBarry Smith /*MC
1155d6e23781SBarry Smith    MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1156bd481603SBarry Smith    inserted using a local number of the rows and columns
1157bd481603SBarry Smith 
1158bd481603SBarry Smith    Synopsis:
1159aaa7dc30SBarry Smith    #include <petscmat.h>
1160d6e23781SBarry Smith    PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1161d6e23781SBarry Smith 
1162d6e23781SBarry Smith    Not Collective
1163d6e23781SBarry Smith 
1164d6e23781SBarry Smith    Input Parameters:
1165d6e23781SBarry Smith +  map   - the row mapping from local numbering to global numbering
1166d6e23781SBarry Smith .  nrows - the number of rows indicated
1167d6e23781SBarry Smith .  rows  - the indices of the rows
1168d6e23781SBarry Smith .  cmap  - the column mapping from local to global numbering
1169d6e23781SBarry Smith .  ncols - the number of columns in the matrix
1170d6e23781SBarry Smith .  cols  - the columns indicated
1171d6e23781SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1172a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1173d6e23781SBarry Smith 
11742ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1175d6e23781SBarry Smith 
1176d6e23781SBarry Smith    Notes:
11772ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11782ef1f0ffSBarry Smith    the use of this routine
1179d6e23781SBarry Smith 
11802ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1181d6e23781SBarry Smith 
11821cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1183db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`
1184d6e23781SBarry Smith M*/
118594bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11869371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1187d6e23781SBarry Smith 
1188d6e23781SBarry Smith /*MC
1189d6e23781SBarry Smith    MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1190d6e23781SBarry Smith    inserted using a local number of the rows and columns
1191d6e23781SBarry Smith 
1192d6e23781SBarry Smith    Synopsis:
1193d6e23781SBarry Smith    #include <petscmat.h>
1194d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1195bd481603SBarry Smith 
1196bd481603SBarry Smith    Not Collective
1197bd481603SBarry Smith 
1198bd481603SBarry Smith    Input Parameters:
1199bd481603SBarry Smith +  map   - the mapping between local numbering and global numbering
1200bd481603SBarry Smith .  nrows - the number of rows indicated
12011d73ed98SBarry Smith .  rows  - the indices of the rows
1202bd481603SBarry Smith .  ncols - the number of columns in the matrix
1203bd481603SBarry Smith .  cols  - the columns indicated
1204bd481603SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1205a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1206bd481603SBarry Smith 
12072ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1208bd481603SBarry Smith 
1209bd481603SBarry Smith    Notes:
12102ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12112ef1f0ffSBarry Smith    the use of this routine
1212bd481603SBarry Smith 
12132ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1214bd481603SBarry Smith 
12151cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`
1216db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1217bd481603SBarry Smith M*/
121894bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \
12199371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));)
1220e83a5d19SLisandro Dalcin 
1221bd481603SBarry Smith /*MC
1222bd481603SBarry Smith    MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1223bd481603SBarry Smith    inserted using a local number of the rows and columns
1224bd481603SBarry Smith 
1225bd481603SBarry Smith    Synopsis:
1226aaa7dc30SBarry Smith    #include <petscmat.h>
1227c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1228bd481603SBarry Smith 
1229bd481603SBarry Smith    Not Collective
1230bd481603SBarry Smith 
1231bd481603SBarry Smith    Input Parameters:
123264075487SBarry Smith +  row   - the row
1233bd481603SBarry Smith .  ncols - the number of columns in the matrix
1234a50f8bf6SHong Zhang -  cols  - the columns indicated
1235a50f8bf6SHong Zhang 
1236a50f8bf6SHong Zhang    Output Parameters:
1237a50f8bf6SHong Zhang +  dnz - the array that will be passed to the matrix preallocation routines
1238a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1239bd481603SBarry Smith 
12402ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1241bd481603SBarry Smith 
1242bd481603SBarry Smith    Notes:
12432ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12442ef1f0ffSBarry Smith    the use of this routine
1245bd481603SBarry Smith 
12462ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1247bd481603SBarry Smith 
1248af27ebaaSBarry Smith    This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin().
12491620fd73SBarry Smith 
12501cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1251db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1252bd481603SBarry Smith M*/
12539371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \
12549371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \
125564075487SBarry Smith     if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \
1256a6042fd4SStefano Zampini     else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12579371c9d4SSatish Balay   })
12587c922b88SBarry Smith 
1259bd481603SBarry Smith /*MC
1260d6e23781SBarry Smith    MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1261bd481603SBarry Smith    inserted using a local number of the rows and columns
1262bd481603SBarry Smith 
1263bd481603SBarry Smith    Synopsis:
1264aaa7dc30SBarry Smith    #include <petscmat.h>
1265d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1266bd481603SBarry Smith 
1267bd481603SBarry Smith    Not Collective
1268bd481603SBarry Smith 
1269bd481603SBarry Smith    Input Parameters:
1270bd481603SBarry Smith +  nrows - the number of rows indicated
12711d73ed98SBarry Smith .  rows  - the indices of the rows
1272bd481603SBarry Smith .  ncols - the number of columns in the matrix
1273bd481603SBarry Smith .  cols  - the columns indicated
1274bd481603SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1275a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1276bd481603SBarry Smith 
12772ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1278bd481603SBarry Smith 
1279bd481603SBarry Smith    Notes:
12802ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12812ef1f0ffSBarry Smith    the use of this routine
1282bd481603SBarry Smith 
12832ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1284bd481603SBarry Smith 
1285af27ebaaSBarry Smith    This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin().
12861620fd73SBarry Smith 
12871cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`,
1288db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1289bd481603SBarry Smith M*/
129094bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \
12919371c9d4SSatish Balay   PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \
1292d3d32019SBarry Smith     if (cols[__i] >= __end) onz[row - __rstart]++; \
1293a6042fd4SStefano Zampini     else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12949371c9d4SSatish Balay   })
1295d3d32019SBarry Smith 
1296bd481603SBarry Smith /*MC
1297a6042fd4SStefano Zampini    MatPreallocateLocation -  An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists
129816371a99SBarry Smith 
129916371a99SBarry Smith    Synopsis:
1300aaa7dc30SBarry Smith    #include <petscmat.h>
130116371a99SBarry Smith    PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz)
130216371a99SBarry Smith 
130316371a99SBarry Smith    Not Collective
130416371a99SBarry Smith 
130516371a99SBarry Smith    Input Parameters:
1306a2b725a8SWilliam Gropp +  A     - matrix
130716371a99SBarry Smith .  row   - row where values exist (must be local to this process)
130816371a99SBarry Smith .  ncols - number of columns
130916371a99SBarry Smith .  cols  - columns with nonzeros
131016371a99SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1311a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
131216371a99SBarry Smith 
13132ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
131416371a99SBarry Smith 
131516371a99SBarry Smith    Notes:
13162ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
13172ef1f0ffSBarry Smith    the use of this routine
131816371a99SBarry Smith 
13192ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
132016371a99SBarry Smith 
1321af27ebaaSBarry Smith    Developer Note:
1322af27ebaaSBarry Smith    This is a MACRO, not a function, because it uses a bunch of variables private to the MatPreallocation.... routines.
132316371a99SBarry Smith 
13241cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1325db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
132616371a99SBarry Smith M*/
1327d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz))
132816371a99SBarry Smith 
132916371a99SBarry Smith /*MC
1330d0609cedSBarry Smith    MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per
1331bd481603SBarry Smith    row in a matrix providing the data that one can use to correctly preallocate the matrix.
1332bd481603SBarry Smith 
1333bd481603SBarry Smith    Synopsis:
1334aaa7dc30SBarry Smith    #include <petscmat.h>
1335d0609cedSBarry Smith    PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz)
1336bd481603SBarry Smith 
1337d083f849SBarry Smith    Collective
1338bd481603SBarry Smith 
1339bd481603SBarry Smith    Input Parameters:
134016371a99SBarry Smith +  dnz - the array that was be passed to the matrix preallocation routines
1341a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1342bd481603SBarry Smith 
13432ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1344bd481603SBarry Smith 
1345bd481603SBarry Smith    Notes:
13462ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
13472ef1f0ffSBarry Smith    the use of this routine
1348d0609cedSBarry Smith 
13492ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1350bd481603SBarry Smith 
13512ef1f0ffSBarry Smith    Developer Note:
1352af27ebaaSBarry Smith    This is a MACRO, not a function, because it closes the { started in MatPreallocateBegin().
13531620fd73SBarry Smith 
13541cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1355db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1356bd481603SBarry Smith M*/
13579371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \
13589371c9d4SSatish Balay   PetscCall(PetscFree2(dnz, onz)); \
13599371c9d4SSatish Balay   } \
13609371c9d4SSatish Balay   while (0)
1361d0609cedSBarry Smith 
1362edd03b47SJacob Faibussowitsch #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateEnd()", ) MatPreallocateEnd(__VA_ARGS__)
13637c922b88SBarry Smith 
13647b80b807SBarry Smith /* Routines unique to particular data structures */
1365014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *);
1366698d4c6aSKris Buschelman 
1367014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *);
1368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *);
1369698d4c6aSKris Buschelman 
1370014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]);
1371014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]);
1372014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1373014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1374014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1375014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool);
13767b80b807SBarry Smith 
1377a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4
1378a96a251dSBarry Smith 
1379014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1380014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1381014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]);
138219b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt);
1383273d9f13SBarry Smith 
1384014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1385014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1386014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1387014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1388014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1389014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1390014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1391014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]);
1392b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *);
1393252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *);
1394014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]);
1395014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]);
13969230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
13979230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
1398014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *);
1399273d9f13SBarry Smith 
140049a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *);
1401ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt);
1402edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatDenseSetLDA()", ) static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda)
1403d71ae5a4SJacob Faibussowitsch {
14049371c9d4SSatish Balay   return MatDenseSetLDA(A, lda);
14059371c9d4SSatish Balay }
1406014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *);
14071b807ce4Svictorle 
1408621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1409621e819fSSatish Balay 
1410014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat);
1411014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat);
14122e8a6d31SBarry Smith 
1413014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *);
14147cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *);
14157b80b807SBarry Smith /*
14167b80b807SBarry Smith   These routines are not usually accessed directly, rather solving is
141794b7f48cSBarry Smith   done through the KSP and PC interfaces.
14187b80b807SBarry Smith */
14197b80b807SBarry Smith 
142076bdecfbSBarry Smith /*J
14212ef1f0ffSBarry Smith    MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used
14222ef1f0ffSBarry Smith    to reduce fill in sparse factorizations.
1423d9274352SBarry Smith 
1424d9274352SBarry Smith    Level: beginner
1425d9274352SBarry Smith 
14262c7c0729SBarry Smith    Notes:
142716a05f60SBarry Smith    If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one
142816a05f60SBarry Smith    of its own.
14292c7c0729SBarry Smith 
14302ef1f0ffSBarry Smith    There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()`
14312ef1f0ffSBarry Smith 
14322ef1f0ffSBarry Smith    Developer Note:
14332ef1f0ffSBarry Smith    This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning`
14342ef1f0ffSBarry Smith 
14351cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`,
14362ef1f0ffSBarry Smith           `PCFactorSetOrderingType()`
143776bdecfbSBarry Smith J*/
143819fd82e9SBarry Smith typedef const char *MatOrderingType;
14392692d6eeSBarry Smith #define MATORDERINGNATURAL       "natural"
14402692d6eeSBarry Smith #define MATORDERINGND            "nd"
14412692d6eeSBarry Smith #define MATORDERING1WD           "1wd"
14422692d6eeSBarry Smith #define MATORDERINGRCM           "rcm"
14432692d6eeSBarry Smith #define MATORDERINGQMD           "qmd"
14442692d6eeSBarry Smith #define MATORDERINGROWLENGTH     "rowlength"
1445510184a7SJed Brown #define MATORDERINGWBM           "wbm"
1446fc1bef75SJed Brown #define MATORDERINGSPECTRAL      "spectral"
1447312e372aSBarry Smith #define MATORDERINGAMD           "amd"           /* only works if UMFPACK is installed with PETSc */
1448048412efSPablo Brubeck #define MATORDERINGMETISND       "metisnd"       /* only works if METIS is installed with PETSc */
14499bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */
14502c7c0729SBarry Smith #define MATORDERINGEXTERNAL      "external"      /* uses an ordering type internal to the factorization package */
1451b12f92e5SBarry Smith 
145219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrdering(Mat, MatOrderingType, IS *, IS *);
1453140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrderingList(PetscFunctionList *);
1454bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode    MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *));
1455140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList;
1456d4fbbf0eSBarry Smith 
1457013e2dc7SBarry Smith #include "petscmatcoarsen.h"
1458013e2dc7SBarry Smith 
1459014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS);
1460fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *);
1461a2ce50c7SBarry Smith 
14624ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *);
14634ac6704cSBarry Smith 
1464d91e6319SBarry Smith /*S
14652ef1f0ffSBarry Smith    MatFactorShiftType - Type of numeric shift used for factorizations
1466d90ac83dSHong Zhang 
14672ef1f0ffSBarry Smith    Values:
14682ef1f0ffSBarry Smith +  `MAT_SHIFT_NONE`              - do not shift the matrix diagonal entries
14692ef1f0ffSBarry Smith .  `MAT_SHIFT_NONZERO`           - shift the entries to be non-zero
14702ef1f0ffSBarry Smith .  `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite
14712ef1f0ffSBarry Smith -  `MAT_SHIFT_INBLOCKS`          - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ`
1472d90ac83dSHong Zhang 
14732ef1f0ffSBarry Smith    Level: intermediate
14742ef1f0ffSBarry Smith 
14751cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()`
1476d90ac83dSHong Zhang S*/
14779371c9d4SSatish Balay typedef enum {
14789371c9d4SSatish Balay   MAT_SHIFT_NONE,
14799371c9d4SSatish Balay   MAT_SHIFT_NONZERO,
14809371c9d4SSatish Balay   MAT_SHIFT_POSITIVE_DEFINITE,
14819371c9d4SSatish Balay   MAT_SHIFT_INBLOCKS
14829371c9d4SSatish Balay } MatFactorShiftType;
14836a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[];
14845e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[];
1485d90ac83dSHong Zhang 
1486d90ac83dSHong Zhang /*S
1487ec5066bdSBarry Smith     MatFactorError - indicates what type of error was generated in a matrix factorization
14889aa7eafdSHong Zhang 
14892ef1f0ffSBarry Smith     Values:
14902ef1f0ffSBarry Smith +   `MAT_FACTOR_NOERROR`           - there was no error during the factorization
14912ef1f0ffSBarry Smith .   `MAT_FACTOR_STRUCT_ZEROPIVOT`  - there was a missing entry in a diagonal location of the matrix
14922ef1f0ffSBarry Smith .   `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization
14932ef1f0ffSBarry Smith .   `MAT_FACTOR_OUTMEMORY`         - the factorization has run out of memory
14942ef1f0ffSBarry Smith -   `MAT_FACTOR_OTHER`             - some other error has occurred.
14959aa7eafdSHong Zhang 
14962ef1f0ffSBarry Smith     Level: intermediate
149700e125f8SBarry Smith 
14982ef1f0ffSBarry Smith     Note:
14992ef1f0ffSBarry Smith     When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason`
15002ef1f0ffSBarry Smith 
15011cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`,
15022ef1f0ffSBarry Smith           `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason`
15039aa7eafdSHong Zhang S*/
15049371c9d4SSatish Balay typedef enum {
15059371c9d4SSatish Balay   MAT_FACTOR_NOERROR,
15069371c9d4SSatish Balay   MAT_FACTOR_STRUCT_ZEROPIVOT,
15079371c9d4SSatish Balay   MAT_FACTOR_NUMERIC_ZEROPIVOT,
15089371c9d4SSatish Balay   MAT_FACTOR_OUTMEMORY,
15099371c9d4SSatish Balay   MAT_FACTOR_OTHER
15109371c9d4SSatish Balay } MatFactorError;
15119aa7eafdSHong Zhang 
151200e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *);
1513b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat);
15147b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *);
151500e125f8SBarry Smith 
15169aa7eafdSHong Zhang /*S
1517422a814eSBarry Smith    MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization
1518b00f7748SHong Zhang 
1519b00f7748SHong Zhang    Level: developer
1520b00f7748SHong Zhang 
15212ef1f0ffSBarry Smith    Note:
15222ef1f0ffSBarry Smith    You can use `MatFactorInfoInitialize()` to set default values.
1523b00f7748SHong Zhang 
15242ef1f0ffSBarry Smith    Fortran Note:
15252ef1f0ffSBarry Smith    The data is available in a double precision arrays of size `MAT_FACTORINFO_SIZE`
15262ef1f0ffSBarry Smith 
15271cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`,
15282ef1f0ffSBarry Smith           `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()`
1529b00f7748SHong Zhang S*/
1530b00f7748SHong Zhang typedef struct {
153115e8a5b3SHong Zhang   PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */
153285317021SBarry Smith   PetscReal usedt;
153315e8a5b3SHong Zhang   PetscReal dt;            /* drop tolerance */
1534b00f7748SHong Zhang   PetscReal dtcol;         /* tolerance for pivoting */
153515e8a5b3SHong Zhang   PetscReal dtcount;       /* maximum nonzeros to be allowed per row */
153667e28bfeSBarry Smith   PetscReal fill;          /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */
1537348344bbSBarry Smith   PetscReal levels;        /* ICC/ILU(levels) */
1538bcd9e38bSBarry Smith   PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0
1539bcd9e38bSBarry Smith                                    factorization may be faster if do not pivot */
154015e8a5b3SHong Zhang   PetscReal zeropivot;     /* pivot is called zero if less than this */
1541f4db908eSBarry Smith   PetscReal shifttype;     /* type of shift added to matrix factor to prevent zero pivots */
1542f4db908eSBarry Smith   PetscReal shiftamount;   /* how large the shift is */
154315e8a5b3SHong Zhang } MatFactorInfo;
1544ffa6d0a5SLois Curfman McInnes 
1545014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *);
15469a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *);
15479a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15489a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *);
15499a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *);
15509a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *);
15519a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15529a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15539a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15549a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *);
15559a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *);
15563f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *);
15573f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15583f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *);
1559014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *);
1560014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec);
1561014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec);
1562014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec);
1563014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec);
1564014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec);
1565014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec);
1566014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs);
15677c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat);
15687c2f51b8SStefano Zampini 
15699371c9d4SSatish Balay typedef enum {
15709371c9d4SSatish Balay   MAT_FACTOR_SCHUR_UNFACTORED,
15719371c9d4SSatish Balay   MAT_FACTOR_SCHUR_FACTORED,
15729371c9d4SSatish Balay   MAT_FACTOR_SCHUR_INVERTED
15739371c9d4SSatish Balay } MatFactorSchurStatus;
15748e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS);
15757c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15767c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus);
15775a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat);
15787c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15795a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec);
15805a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec);
15816dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat);
1582bb5a7306SBarry Smith 
15838a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat);
1584d91e6319SBarry Smith /*E
1585d91e6319SBarry Smith    MatSORType - What type of (S)SOR to perform
1586bb1eb677SSatish Balay 
15872ef1f0ffSBarry Smith    Values:
15882ef1f0ffSBarry Smith +  `SOR_FORWARD_SWEEP`         - do a sweep from the first row of the matrix to the last
15892ef1f0ffSBarry Smith .  `SOR_BACKWARD_SWEEP`        - do a sweep from the last row to the first
15902ef1f0ffSBarry Smith .  `SOR_SYMMETRIC_SWEEP`       - do a sweep from the first row to the last and then back to the first
1591af27ebaaSBarry Smith .  `SOR_LOCAL_FORWARD_SWEEP`   - each MPI process does its own forward sweep with no communication
1592af27ebaaSBarry Smith .  `SOR_LOCAL_BACKWARD_SWEEP`  - each MPI process does its own backward sweep with no communication
1593af27ebaaSBarry Smith .  `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI process does its own symmetric sweep with no communication
15942ef1f0ffSBarry Smith .  `SOR_ZERO_INITIAL_GUESS`    - indicates the initial solution is zero so the sweep can avoid unneeded computation
15952ef1f0ffSBarry Smith .  `SOR_EISENSTAT`             - apply the Eisentat application of SOR, see `PCEISENSTAT`
15962ef1f0ffSBarry Smith .  `SOR_APPLY_UPPER`           - multiply by the upper triangular portion of the matrix
15972ef1f0ffSBarry Smith -  `SOR_APPLY_LOWER`           - multiply by the lower triangular portion of the matrix
15982ef1f0ffSBarry Smith 
1599d91e6319SBarry Smith    Level: beginner
1600d91e6319SBarry Smith 
16012ef1f0ffSBarry Smith    Note:
16022ef1f0ffSBarry Smith    These may be bitwise ORd together
1603d9274352SBarry Smith 
16042ef1f0ffSBarry Smith    Developer Note:
16052ef1f0ffSBarry Smith    Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below
1606d91e6319SBarry Smith 
16071cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSOR()`
1608d91e6319SBarry Smith E*/
16099371c9d4SSatish Balay typedef enum {
16109371c9d4SSatish Balay   SOR_FORWARD_SWEEP         = 1,
16119371c9d4SSatish Balay   SOR_BACKWARD_SWEEP        = 2,
16129371c9d4SSatish Balay   SOR_SYMMETRIC_SWEEP       = 3,
16139371c9d4SSatish Balay   SOR_LOCAL_FORWARD_SWEEP   = 4,
16149371c9d4SSatish Balay   SOR_LOCAL_BACKWARD_SWEEP  = 8,
16159371c9d4SSatish Balay   SOR_LOCAL_SYMMETRIC_SWEEP = 12,
16169371c9d4SSatish Balay   SOR_ZERO_INITIAL_GUESS    = 16,
16179371c9d4SSatish Balay   SOR_EISENSTAT             = 32,
16189371c9d4SSatish Balay   SOR_APPLY_UPPER           = 64,
16199371c9d4SSatish Balay   SOR_APPLY_LOWER           = 128
16209371c9d4SSatish Balay } MatSORType;
1621014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
16228ed539a5SBarry Smith 
16237086a01eSPeter Brune /*S
16247086a01eSPeter Brune    MatColoring - Object for managing the coloring of matrices.
16257086a01eSPeter Brune 
16267086a01eSPeter Brune    Level: beginner
16277086a01eSPeter Brune 
1628ec5066bdSBarry Smith    Notes:
162987497f52SBarry Smith    Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
163087497f52SBarry Smith    matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors).
1631ec5066bdSBarry Smith 
163287497f52SBarry Smith    Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This
16332ef1f0ffSBarry Smith    same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices.
1634ec5066bdSBarry Smith 
16351cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`,
16362ef1f0ffSBarry Smith           `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`,
16372ef1f0ffSBarry Smith           `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen`
16387086a01eSPeter Brune S*/
1639d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring;
1640d4db15c4SBarry Smith 
1641d4db15c4SBarry Smith /*J
1642d4db15c4SBarry Smith    MatColoringType - String with the name of a PETSc matrix coloring
1643d9274352SBarry Smith 
1644d9274352SBarry Smith    Level: beginner
1645d9274352SBarry Smith 
16461cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring`
164776bdecfbSBarry Smith J*/
164819fd82e9SBarry Smith typedef const char *MatColoringType;
16495567d71aSPeter Brune #define MATCOLORINGJP      "jp"
1650b9acb617SPeter Brune #define MATCOLORINGPOWER   "power"
16512692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural"
16522692d6eeSBarry Smith #define MATCOLORINGSL      "sl"
16532692d6eeSBarry Smith #define MATCOLORINGLF      "lf"
16542692d6eeSBarry Smith #define MATCOLORINGID      "id"
16558121bdceSPeter Brune #define MATCOLORINGGREEDY  "greedy"
1656b12f92e5SBarry Smith 
16578ac6da0aSPeter Brune /*E
16582ef1f0ffSBarry Smith    MatColoringWeightType - Type of weight scheme used for the coloring algorithm
16598ac6da0aSPeter Brune 
16602ef1f0ffSBarry Smith    Values:
166187497f52SBarry Smith +  `MAT_COLORING_RANDOM`  - Random weights
166287497f52SBarry Smith .  `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering.
166387497f52SBarry Smith -  `MAT_COLORING_LF`      - Last-first weighting.
16648ac6da0aSPeter Brune 
16658ac6da0aSPeter Brune     Level: intermediate
16668ac6da0aSPeter Brune 
16671cc06b55SBarry Smith .seealso: [](ch_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()`
16688ac6da0aSPeter Brune E*/
16699371c9d4SSatish Balay typedef enum {
16709371c9d4SSatish Balay   MAT_COLORING_WEIGHT_RANDOM,
16719371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LEXICAL,
16729371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LF,
16739371c9d4SSatish Balay   MAT_COLORING_WEIGHT_SL
16749371c9d4SSatish Balay } MatColoringWeightType;
16758ac6da0aSPeter Brune 
1676335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *);
1677d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *);
1678335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *);
1679335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer);
1680335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType);
1681335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring);
1682335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt);
1683335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *);
1684335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt);
1685335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *);
1686335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *);
1687335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring));
1688014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *);
16898ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType);
1690c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *);
16918ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm);
1692bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring);
1693edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatColoringTest()", ) static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring)
1694d71ae5a4SJacob Faibussowitsch {
16959371c9d4SSatish Balay   return MatColoringTest(matcoloring, iscoloring);
16969371c9d4SSatish Balay }
1697bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring);
1698639f9d9dSBarry Smith 
1699d9274352SBarry Smith /*S
170087497f52SBarry Smith    MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring
1701639f9d9dSBarry Smith 
1702d9274352SBarry Smith    Level: beginner
1703d9274352SBarry Smith 
1704ec5066bdSBarry Smith    Notes:
170587497f52SBarry Smith    This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()`
1706ec5066bdSBarry Smith 
17072ef1f0ffSBarry Smith    The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object
17082ef1f0ffSBarry Smith 
17091cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()`
1710d9274352SBarry Smith S*/
1711e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring;
1712639f9d9dSBarry Smith 
1713014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *);
1714014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *);
1715014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer);
1716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *);
1717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **);
1718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal);
1719014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring);
1720d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *);
1721014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec);
1722edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]);
1723f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring);
1724f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt);
1725bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *);
1726b1683b59SHong Zhang 
1727b1683b59SHong Zhang /*S
1728af27ebaaSBarry Smith    MatTransposeColoring - Object for computing a sparse matrix product $C = A*B^T$ via coloring
1729b1683b59SHong Zhang 
17302ef1f0ffSBarry Smith    Level: developer
1731b1683b59SHong Zhang 
17321cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()`
1733b1683b59SHong Zhang S*/
1734b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring;
1735b1683b59SHong Zhang 
1736014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *);
1737014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat);
1738014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat);
1739014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *);
1740b1683b59SHong Zhang 
1741d9274352SBarry Smith /*S
1742d9274352SBarry Smith    MatPartitioning - Object for managing the partitioning of a matrix or graph
1743d9274352SBarry Smith 
1744d9274352SBarry Smith    Level: beginner
1745d9274352SBarry Smith 
174687497f52SBarry Smith    Note:
174787497f52SBarry Smith    There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations
174887497f52SBarry Smith    via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`)
1749ec5066bdSBarry Smith 
1750b5e6e808SPierre Jolivet    Developer Note:
17512ef1f0ffSBarry Smith    It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed
1752ec5066bdSBarry Smith 
17531cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`,
17542ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
1755d9274352SBarry Smith S*/
175691e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning;
1757d9274352SBarry Smith 
175876bdecfbSBarry Smith /*J
17598f6c3df8SBarry Smith     MatPartitioningType - String with the name of a PETSc matrix partitioning
1760d9274352SBarry Smith 
1761d9274352SBarry Smith    Level: beginner
17620d04baf8SBarry Smith dm
17631cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`,
17642ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
176576bdecfbSBarry Smith J*/
176619fd82e9SBarry Smith typedef const char *MatPartitioningType;
17672692d6eeSBarry Smith #define MATPARTITIONINGCURRENT  "current"
1768aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE  "average"
17692692d6eeSBarry Smith #define MATPARTITIONINGSQUARE   "square"
17702692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis"
17712692d6eeSBarry Smith #define MATPARTITIONINGCHACO    "chaco"
17722692d6eeSBarry Smith #define MATPARTITIONINGPARTY    "party"
177350d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch"
177488d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch"
177571306c60Sjroman 
1776014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *);
177719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType);
1778014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt);
1779014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat);
1780252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt);
1781014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]);
1782014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]);
1783ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool);
1784ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *);
1785014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *);
1786fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *);
1787668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS);
1788f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *);
1789014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *);
1790bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning));
1791014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer);
1792fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]);
1793014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning);
179419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *);
1795ca161407SBarry Smith 
179627538973SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part);
1797014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning);
1798014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *);
17990752156aSBarry Smith 
18009371c9d4SSatish Balay typedef enum {
18019371c9d4SSatish Balay   MP_CHACO_MULTILEVEL = 1,
18029371c9d4SSatish Balay   MP_CHACO_SPECTRAL   = 2,
18039371c9d4SSatish Balay   MP_CHACO_LINEAR     = 4,
18049371c9d4SSatish Balay   MP_CHACO_RANDOM     = 5,
18059371c9d4SSatish Balay   MP_CHACO_SCATTERED  = 6
18069371c9d4SSatish Balay } MPChacoGlobalType;
18076a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[];
18089371c9d4SSatish Balay typedef enum {
18099371c9d4SSatish Balay   MP_CHACO_KERNIGHAN = 1,
18109371c9d4SSatish Balay   MP_CHACO_NONE      = 2
18119371c9d4SSatish Balay } MPChacoLocalType;
18126a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[];
18139371c9d4SSatish Balay typedef enum {
18149371c9d4SSatish Balay   MP_CHACO_LANCZOS = 0,
18159371c9d4SSatish Balay   MP_CHACO_RQI     = 1
18169371c9d4SSatish Balay } MPChacoEigenType;
18176a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[];
1818b6956c12SJose Roman 
1819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType);
1820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *);
1821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType);
1822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *);
1823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal);
1824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType);
1825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *);
1826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal);
1827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *);
1828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt);
1829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *);
183071306c60Sjroman 
183171306c60Sjroman #define MP_PARTY_OPT "opt"
183271306c60Sjroman #define MP_PARTY_LIN "lin"
183371306c60Sjroman #define MP_PARTY_SCA "sca"
183471306c60Sjroman #define MP_PARTY_RAN "ran"
183571306c60Sjroman #define MP_PARTY_GBF "gbf"
183671306c60Sjroman #define MP_PARTY_GCF "gcf"
183771306c60Sjroman #define MP_PARTY_BUB "bub"
183871306c60Sjroman #define MP_PARTY_DEF "def"
1839014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *);
184071306c60Sjroman #define MP_PARTY_HELPFUL_SETS  "hs"
184171306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl"
184271306c60Sjroman #define MP_PARTY_NONE          "no"
1843014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *);
1844014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal);
1845014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool);
1846014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool);
184771306c60Sjroman 
18489371c9d4SSatish Balay typedef enum {
18499371c9d4SSatish Balay   MP_PTSCOTCH_DEFAULT,
18509371c9d4SSatish Balay   MP_PTSCOTCH_QUALITY,
18519371c9d4SSatish Balay   MP_PTSCOTCH_SPEED,
18529371c9d4SSatish Balay   MP_PTSCOTCH_BALANCE,
18539371c9d4SSatish Balay   MP_PTSCOTCH_SAFETY,
18549371c9d4SSatish Balay   MP_PTSCOTCH_SCALABILITY
18559371c9d4SSatish Balay } MPPTScotchStrategyType;
18566a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[];
1857e0f1cffaSJose Roman 
1858014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal);
1859014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *);
1860014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType);
1861014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *);
186271306c60Sjroman 
1863b43b03e9SMark F. Adams /*
18646294fa2bSFande Kong  * hierarchical partitioning
18656294fa2bSFande Kong  */
18664e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *);
18674e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *);
18684e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt);
18694e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt);
18706294fa2bSFande Kong 
1871014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *);
1872591294e4SBarry Smith 
18730752156aSBarry Smith /*
1874c786d857SStefano Zampini     If you add entries here you must also add them to src/mat/f90-mod/petscmat.h
1875c786d857SStefano Zampini     If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx
1876d4fbbf0eSBarry Smith */
18779371c9d4SSatish Balay typedef enum {
18789371c9d4SSatish Balay   MATOP_SET_VALUES               = 0,
18791c1c02c0SLois Curfman McInnes   MATOP_GET_ROW                  = 1,
18801c1c02c0SLois Curfman McInnes   MATOP_RESTORE_ROW              = 2,
18811c1c02c0SLois Curfman McInnes   MATOP_MULT                     = 3,
18821c1c02c0SLois Curfman McInnes   MATOP_MULT_ADD                 = 4,
18837c922b88SBarry Smith   MATOP_MULT_TRANSPOSE           = 5,
18847c922b88SBarry Smith   MATOP_MULT_TRANSPOSE_ADD       = 6,
18851c1c02c0SLois Curfman McInnes   MATOP_SOLVE                    = 7,
18861c1c02c0SLois Curfman McInnes   MATOP_SOLVE_ADD                = 8,
18877c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE          = 9,
18887c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE_ADD      = 10,
18891c1c02c0SLois Curfman McInnes   MATOP_LUFACTOR                 = 11,
18901c1c02c0SLois Curfman McInnes   MATOP_CHOLESKYFACTOR           = 12,
1891a714c06dSBarry Smith   MATOP_SOR                      = 13,
18921c1c02c0SLois Curfman McInnes   MATOP_TRANSPOSE                = 14,
18931c1c02c0SLois Curfman McInnes   MATOP_GETINFO                  = 15,
18941c1c02c0SLois Curfman McInnes   MATOP_EQUAL                    = 16,
18951c1c02c0SLois Curfman McInnes   MATOP_GET_DIAGONAL             = 17,
18961c1c02c0SLois Curfman McInnes   MATOP_DIAGONAL_SCALE           = 18,
18971c1c02c0SLois Curfman McInnes   MATOP_NORM                     = 19,
18981c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_BEGIN           = 20,
18991c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_END             = 21,
1900d519adbfSMatthew Knepley   MATOP_SET_OPTION               = 22,
1901d519adbfSMatthew Knepley   MATOP_ZERO_ENTRIES             = 23,
1902d519adbfSMatthew Knepley   MATOP_ZERO_ROWS                = 24,
1903d519adbfSMatthew Knepley   MATOP_LUFACTOR_SYMBOLIC        = 25,
1904d519adbfSMatthew Knepley   MATOP_LUFACTOR_NUMERIC         = 26,
1905d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27,
1906d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_NUMERIC  = 28,
1907e5f2d425SStefano Zampini   MATOP_SETUP                    = 29,
1908d519adbfSMatthew Knepley   MATOP_ILUFACTOR_SYMBOLIC       = 30,
1909d519adbfSMatthew Knepley   MATOP_ICCFACTOR_SYMBOLIC       = 31,
1910a5b7ff6bSBarry Smith   MATOP_GET_DIAGONAL_BLOCK       = 32,
1911e5f2d425SStefano Zampini   MATOP_SET_INF                  = 33,
1912d519adbfSMatthew Knepley   MATOP_DUPLICATE                = 34,
1913d519adbfSMatthew Knepley   MATOP_FORWARD_SOLVE            = 35,
1914d519adbfSMatthew Knepley   MATOP_BACKWARD_SOLVE           = 36,
1915d519adbfSMatthew Knepley   MATOP_ILUFACTOR                = 37,
1916d519adbfSMatthew Knepley   MATOP_ICCFACTOR                = 38,
1917d519adbfSMatthew Knepley   MATOP_AXPY                     = 39,
19187dae84e0SHong Zhang   MATOP_CREATE_SUBMATRICES       = 40,
1919d519adbfSMatthew Knepley   MATOP_INCREASE_OVERLAP         = 41,
1920d519adbfSMatthew Knepley   MATOP_GET_VALUES               = 42,
1921d519adbfSMatthew Knepley   MATOP_COPY                     = 43,
1922d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX              = 44,
1923d519adbfSMatthew Knepley   MATOP_SCALE                    = 45,
1924d519adbfSMatthew Knepley   MATOP_SHIFT                    = 46,
192535153367SBarry Smith   MATOP_DIAGONAL_SET             = 47,
19269d39f69dSJed Brown   MATOP_ZERO_ROWS_COLUMNS        = 48,
19279d39f69dSJed Brown   MATOP_SET_RANDOM               = 49,
1928d519adbfSMatthew Knepley   MATOP_GET_ROW_IJ               = 50,
1929d519adbfSMatthew Knepley   MATOP_RESTORE_ROW_IJ           = 51,
1930d519adbfSMatthew Knepley   MATOP_GET_COLUMN_IJ            = 52,
1931d519adbfSMatthew Knepley   MATOP_RESTORE_COLUMN_IJ        = 53,
1932d519adbfSMatthew Knepley   MATOP_FDCOLORING_CREATE        = 54,
1933d519adbfSMatthew Knepley   MATOP_COLORING_PATCH           = 55,
1934d519adbfSMatthew Knepley   MATOP_SET_UNFACTORED           = 56,
1935d519adbfSMatthew Knepley   MATOP_PERMUTE                  = 57,
1936d519adbfSMatthew Knepley   MATOP_SET_VALUES_BLOCKED       = 58,
19377dae84e0SHong Zhang   MATOP_CREATE_SUBMATRIX         = 59,
1938d519adbfSMatthew Knepley   MATOP_DESTROY                  = 60,
1939d519adbfSMatthew Knepley   MATOP_VIEW                     = 61,
1940d519adbfSMatthew Knepley   MATOP_CONVERT_FROM             = 62,
1941e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_63=63 */
19427bab7c10SHong Zhang   MATOP_MATMAT_MULT_SYMBOLIC    = 64,
19437bab7c10SHong Zhang   MATOP_MATMAT_MULT_NUMERIC     = 65,
1944d519adbfSMatthew Knepley   MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66,
1945d519adbfSMatthew Knepley   MATOP_SET_VALUES_LOCAL        = 67,
1946d519adbfSMatthew Knepley   MATOP_ZERO_ROWS_LOCAL         = 68,
1947d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX_ABS         = 69,
1948d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN_ABS         = 70,
1949d519adbfSMatthew Knepley   MATOP_CONVERT                 = 71,
1950e5f2d425SStefano Zampini   MATOP_HAS_OPERATION           = 72,
19519d39f69dSJed Brown   /* MATOP_PLACEHOLDER_73=73, */
1952d519adbfSMatthew Knepley   MATOP_SET_VALUES_ADIFOR = 74,
1953d519adbfSMatthew Knepley   MATOP_FD_COLORING_APPLY = 75,
1954d519adbfSMatthew Knepley   MATOP_SET_FROM_OPTIONS  = 76,
1955e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_77=77, */
1956e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_78=78, */
19579d39f69dSJed Brown   MATOP_FIND_ZERO_DIAGONALS       = 79,
1958d519adbfSMatthew Knepley   MATOP_MULT_MULTIPLE             = 80,
1959d519adbfSMatthew Knepley   MATOP_SOLVE_MULTIPLE            = 81,
1960d519adbfSMatthew Knepley   MATOP_GET_INERTIA               = 82,
1961d519adbfSMatthew Knepley   MATOP_LOAD                      = 83,
1962d519adbfSMatthew Knepley   MATOP_IS_SYMMETRIC              = 84,
1963d519adbfSMatthew Knepley   MATOP_IS_HERMITIAN              = 85,
1964d519adbfSMatthew Knepley   MATOP_IS_STRUCTURALLY_SYMMETRIC = 86,
1965820469bcSHong Zhang   MATOP_SET_VALUES_BLOCKEDLOCAL   = 87,
1966b41ce5d5SBarry Smith   MATOP_CREATE_VECS               = 88,
1967e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_89=89, */
1968d519adbfSMatthew Knepley   MATOP_MAT_MULT_SYMBOLIC = 90,
1969d519adbfSMatthew Knepley   MATOP_MAT_MULT_NUMERIC  = 91,
1970e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_92=92, */
1971d519adbfSMatthew Knepley   MATOP_PTAP_SYMBOLIC = 93,
1972d519adbfSMatthew Knepley   MATOP_PTAP_NUMERIC  = 94,
1973e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_95=95, */
1974bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96,
1975bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_NUMER = 97,
1976e5f2d425SStefano Zampini   MATOP_BIND_TO_CPU              = 98,
19777a3c3d58SStefano Zampini   MATOP_PRODUCTSETFROMOPTIONS    = 99,
19787a3c3d58SStefano Zampini   MATOP_PRODUCTSYMBOLIC          = 100,
19797a3c3d58SStefano Zampini   MATOP_PRODUCTNUMERIC           = 101,
1980d519adbfSMatthew Knepley   MATOP_CONJUGATE                = 102,
1981e5f2d425SStefano Zampini   MATOP_VIEW_NATIVE              = 103,
1982d519adbfSMatthew Knepley   MATOP_SET_VALUES_ROW           = 104,
1983d519adbfSMatthew Knepley   MATOP_REAL_PART                = 105,
1984bda6c4cbSBarry Smith   MATOP_IMAGINARY_PART           = 106,
1985bda6c4cbSBarry Smith   MATOP_GET_ROW_UPPER_TRIANGULAR = 107,
1986bda6c4cbSBarry Smith   MATOP_RESTORE_ROW_UPPER_TRIANG = 108,
1987bda6c4cbSBarry Smith   MATOP_MAT_SOLVE                = 109,
198829eadf9eSStefano Zampini   MATOP_MAT_SOLVE_TRANSPOSE      = 110,
1989d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN              = 111,
19900e8d04f7SBarry Smith   MATOP_GET_COLUMN_VECTOR        = 112,
1991d519adbfSMatthew Knepley   MATOP_MISSING_DIAGONAL         = 113,
19920e8d04f7SBarry Smith   MATOP_GET_SEQ_NONZERO_STRUCTUR = 114,
199389c6957cSBarry Smith   MATOP_CREATE                   = 115,
199489c6957cSBarry Smith   MATOP_GET_GHOSTS               = 116,
19950e8d04f7SBarry Smith   MATOP_GET_LOCAL_SUB_MATRIX     = 117,
19960e8d04f7SBarry Smith   MATOP_RESTORE_LOCALSUB_MATRIX  = 118,
1997eeffb40dSHong Zhang   MATOP_MULT_DIAGONAL_BLOCK      = 119,
19980e8d04f7SBarry Smith   MATOP_HERMITIAN_TRANSPOSE      = 120,
19990e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANSPOSE = 121,
20000e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANS_ADD = 122,
20010e8d04f7SBarry Smith   MATOP_GET_MULTI_PROC_BLOCK     = 123,
20029d39f69dSJed Brown   MATOP_FIND_NONZERO_ROWS        = 124,
20030e8d04f7SBarry Smith   MATOP_GET_COLUMN_NORMS         = 125,
20049d39f69dSJed Brown   MATOP_INVERT_BLOCK_DIAGONAL    = 126,
2005e5f2d425SStefano Zampini   MATOP_INVERT_VBLOCK_DIAGONAL   = 127,
2006b41ce5d5SBarry Smith   MATOP_CREATE_SUB_MATRICES_MPI  = 128,
20072b8ad9a3SHong Zhang   MATOP_SET_VALUES_BATCH         = 129,
2008e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_130=130, */
20090e8d04f7SBarry Smith   MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131,
2010e9b602ebSSatish Balay   MATOP_TRANSPOSE_MAT_MULT_NUMER = 132,
20110e8d04f7SBarry Smith   MATOP_TRANSPOSE_COLORING_CREAT = 133,
20120e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_SPT = 134,
20130e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_DEN = 135,
2014e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_136=136, */
20150e8d04f7SBarry Smith   MATOP_RART_SYMBOLIC         = 137,
20160e8d04f7SBarry Smith   MATOP_RART_NUMERIC          = 138,
2017e09a3074SHong Zhang   MATOP_SET_BLOCK_SIZES       = 139,
2018f9426fe0SMark Adams   MATOP_AYPX                  = 140,
20191919a2e2SJed Brown   MATOP_RESIDUAL              = 141,
20209c8f2541SHong Zhang   MATOP_FDCOLORING_SETUP      = 142,
2021e5f2d425SStefano Zampini   MATOP_FIND_OFFBLOCK_ENTRIES = 143,
20222d033e1fSHong Zhang   MATOP_MPICONCATENATESEQ     = 144,
2023bb01b7b0SPatrick Sanan   MATOP_DESTROYSUBMATRICES    = 145,
2024e265f6d6SPatrick Sanan   MATOP_TRANSPOSE_SOLVE       = 146,
2025e265f6d6SPatrick Sanan   MATOP_GET_VALUES_LOCAL      = 147
2026fae171e0SBarry Smith } MatOperation;
20270c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void));
2028976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void));
2029976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *);
203094342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *);
2031edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatProductClear()", ) static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A)
2032d71ae5a4SJacob Faibussowitsch {
20339371c9d4SSatish Balay   return MatProductClear(A);
20349371c9d4SSatish Balay }
2035014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void));
2036014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void));
2037014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *);
2038800f99ffSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *));
2039db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType);
2040f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
2041f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
20420c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat);
2043b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType);
2044b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *);
2045112a2221SBarry Smith 
204690ace30eSBarry Smith /*
204790ace30eSBarry Smith    Codes for matrices stored on disk. By default they are
204890ace30eSBarry Smith    stored in a universal format. By changing the format with
20496a9046bcSBarry Smith    PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will
205090ace30eSBarry Smith    be stored in a way natural for the matrix, for example dense matrices
205190ace30eSBarry Smith    would be stored as dense. Matrices stored this way may only be
2052f4403165SShri Abhyankar    read into matrices of the same type.
205390ace30eSBarry Smith */
205490ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1
205590ace30eSBarry Smith 
2056014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal);
205775d48cdbSStefano Zampini 
20588546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType);
205975d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
20604f58015eSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetAllowRepeated(Mat, PetscBool);
20614f58015eSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetAllowRepeated(Mat, PetscBool *);
206275d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool);
2063f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool);
2064014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *);
20653b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *);
2066014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat);
2067e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
20681f4e1ec7SBarry Smith 
2069d9274352SBarry Smith /*S
2070d9274352SBarry Smith    MatNullSpace - Object that removes a null space from a vector, i.e.
2071cb6b9846SMatthew Knepley                   orthogonalizes the vector to a subspace
2072d9274352SBarry Smith 
2073f7a9e4ceSBarry Smith    Level: advanced
2074d9274352SBarry Smith 
20751cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()`
2076d9274352SBarry Smith S*/
207774637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace;
2078d9274352SBarry Smith 
2079014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *);
2080014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *);
2081014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *);
2082d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec);
2083014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *);
20845fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *);
20855fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace);
2086014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace);
2087014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace);
2088014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *);
20894849c82aSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNullSpaces(PetscInt, Mat[], MatNullSpace *[]);
20904849c82aSBarry Smith PETSC_EXTERN PetscErrorCode MatRestoreNullSpaces(PetscInt, Mat[], MatNullSpace *[]);
2091014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *);
2092014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer);
2093014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **);
2094014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *);
209574637425SBarry Smith 
2096014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS);
2097014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal);
2098014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *);
20993f1d51d7SBarry Smith 
2100014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *);
2101014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *);
2102014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *);
2103c4f061fbSSatish Balay 
21040bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *);
21050bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *);
21060bacdadaSStefano Zampini 
2107edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperator()", ) static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B)
2108d71ae5a4SJacob Faibussowitsch {
2109f22e26b7SPierre Jolivet   return MatComputeOperator(A, PETSC_NULLPTR, B);
21109371c9d4SSatish Balay }
2111edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperatorTranspose()", ) static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B)
2112d71ae5a4SJacob Faibussowitsch {
2113f22e26b7SPierre Jolivet   return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B);
21149371c9d4SSatish Balay }
2115b0a32e0cSBarry Smith 
211649bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *);
211749bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *);
2118a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **);
2119a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2120a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **);
2121a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **);
2122a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **);
2123a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2124a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **);
2125a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **);
2126dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat);
2127dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]);
2128dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]);
2129910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *);
213049bd79ccSDebojyoti Ghosh 
2131014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec);
213204f1ad80SBarry Smith 
21334bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDInitializePackage(void);
21344bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDFinalizePackage(void);
21354bf303faSJacob Faibussowitsch 
2136014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2137014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec);
2138014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *);
2139014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *));
2140014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec));
2141014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt);
2142014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat);
2143014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal);
2144014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt);
2145014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *);
2146014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]);
2147014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *);
2148014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *);
2149e884886fSBarry Smith 
21506370053bSBarry Smith /*S
21516370053bSBarry Smith     MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free
21526370053bSBarry Smith               Jacobian vector products
2153e884886fSBarry Smith 
21542ef1f0ffSBarry Smith     Level: developer
21552ef1f0ffSBarry Smith 
215695452b02SPatrick Sanan     Notes:
215787497f52SBarry Smith     `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure
21586370053bSBarry Smith 
21592ef1f0ffSBarry Smith      MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure
21606370053bSBarry Smith 
21612ef1f0ffSBarry Smith     This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator`
21626370053bSBarry Smith 
21631cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`,
21642ef1f0ffSBarry Smith           `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator`
21656370053bSBarry Smith S*/
2166e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD;
2167e884886fSBarry Smith 
216876bdecfbSBarry Smith /*J
21692ef1f0ffSBarry Smith    MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function
2170e884886fSBarry Smith 
217116a05f60SBarry Smith    Values:
2172af27ebaaSBarry Smith +   `MATMFFD_DS` - an algorithm described by Dennis and Schnabel {cite}`dennis:83`
2173af27ebaaSBarry Smith -   `MATMFFD_WP` - the Walker-Pernice {cite}`pw98` strategy.
217416a05f60SBarry Smith 
2175e884886fSBarry Smith    Level: beginner
2176e884886fSBarry Smith 
21771cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()`
217876bdecfbSBarry Smith J*/
217919fd82e9SBarry Smith typedef const char *MatMFFDType;
2180e884886fSBarry Smith #define MATMFFD_DS "ds"
2181e884886fSBarry Smith #define MATMFFD_WP "wp"
2182e884886fSBarry Smith 
218319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType);
2184bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD));
2185e884886fSBarry Smith 
2186014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal);
2187014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool);
2188e884886fSBarry Smith 
218961ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType);
219061ab5df0SBarry Smith 
2191014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *);
2192014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *);
21937dbadf16SMatthew Knepley 
219453022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS
21958434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscScalar(MatH2OpusKernelFn)(PetscInt, PetscReal[], PetscReal[], void *);
21968434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatH2OpusKernelFn *MatH2OpusKernel;
21978434afd1SBarry Smith PETSC_EXTERN PetscErrorCode                     MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernelFn *, void *, PetscReal, PetscInt, PetscInt, Mat *);
219853022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *);
219953022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal);
220053022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusOrthogonalize(Mat);
220153022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusCompress(Mat, PetscReal);
220253022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusSetNativeMult(Mat, PetscBool);
220353022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusGetNativeMult(Mat, PetscBool *);
220453022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusGetIndexMap(Mat, IS *);
220553022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *);
2206300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar);
2207a0d2e7d8SStefano Zampini #endif
2208a0d2e7d8SStefano Zampini 
2209c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL
22108434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode(MatHtoolKernelFn)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *);
22118434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatHtoolKernelFn *MatHtoolKernel;
22128434afd1SBarry Smith PETSC_EXTERN PetscErrorCode                    MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernelFn *, void *, Mat *);
22138434afd1SBarry Smith PETSC_EXTERN PetscErrorCode                    MatHtoolSetKernel(Mat, MatHtoolKernelFn *, void *);
221498e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode                    MatHtoolGetPermutationSource(Mat, IS *);
221598e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode                    MatHtoolGetPermutationTarget(Mat, IS *);
221698e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode                    MatHtoolUsePermutation(Mat, PetscBool);
22172ef1f0ffSBarry Smith 
2218c7a4214aSPierre Jolivet /*E
221987497f52SBarry Smith    MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL`
2220c7a4214aSPierre Jolivet 
2221c7a4214aSPierre Jolivet    Values:
222287497f52SBarry Smith +  `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation
222387497f52SBarry Smith .  `MAT_HTOOL_COMPRESSOR_FULL_ACA`                 - full adaptive cross approximation
222487497f52SBarry Smith -  `MAT_HTOOL_COMPRESSOR_SVD`                      - singular value decomposition
2225c7a4214aSPierre Jolivet 
222616a05f60SBarry Smith    Level: intermediate
222716a05f60SBarry Smith 
22281cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType`
2229c7a4214aSPierre Jolivet E*/
22309371c9d4SSatish Balay typedef enum {
22319371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA,
22329371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_FULL_ACA,
22339371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SVD
22349371c9d4SSatish Balay } MatHtoolCompressorType;
22352ef1f0ffSBarry Smith 
223698e73e17SPierre Jolivet /*E
223787497f52SBarry Smith    MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL`
223898e73e17SPierre Jolivet 
223998e73e17SPierre Jolivet    Values:
224087497f52SBarry Smith +  `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default)    - axis computed via principle component analysis, split uniformly
224187497f52SBarry Smith .  `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC`            - axis computed via principle component analysis, split barycentrically
224287497f52SBarry Smith .  `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR`   - axis along the largest extent of the bounding box, split uniformly
224387497f52SBarry Smith -  `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically
224498e73e17SPierre Jolivet 
224516a05f60SBarry Smith    Level: intermediate
224616a05f60SBarry Smith 
22472ef1f0ffSBarry Smith    Note:
22482ef1f0ffSBarry Smith    Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types
224998e73e17SPierre Jolivet 
22501cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType`
225198e73e17SPierre Jolivet E*/
22529371c9d4SSatish Balay typedef enum {
22539371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_REGULAR,
22549371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC,
22559371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR,
22569371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC
22579371c9d4SSatish Balay } MatHtoolClusteringType;
2258c7a4214aSPierre Jolivet #endif
2259c7a4214aSPierre Jolivet 
226097969023SHong Zhang #ifdef PETSC_HAVE_MUMPS
2261014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt);
2262bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *);
2263b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal);
2264bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *);
2265bc6112feSHong Zhang 
2266ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *);
2267ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *);
2268ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *);
2269ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *);
22705c0bae8cSAshish Patel PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **);
227189a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat);
22720e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat);
227397969023SHong Zhang #endif
227423a5497aSJed Brown 
2275b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO
2276d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt);
2277b500a6b7SJose David Bermeol #endif
2278b500a6b7SJose David Bermeol 
2279d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO
2280d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt);
2281d305a81bSVasiliy Kozyrev #endif
2282d305a81bSVasiliy Kozyrev 
2283d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU
2284014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal);
2285d954db57SHong Zhang #endif
2286d954db57SHong Zhang 
2287fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST
2288fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *);
2289fb785984SHong Zhang #endif
2290fb785984SHong Zhang 
2291575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK
2292542aee0fSPieter Ghysels /*E
229329e0a805SPieter Ghysels     MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK`
2294542aee0fSPieter Ghysels 
22952ef1f0ffSBarry Smith     Values:
22962ef1f0ffSBarry Smith +  `MAT_STRUMPACK_NATURAL`   - use the current ordering
22972ef1f0ffSBarry Smith .  `MAT_STRUMPACK_METIS`     - use MeTis to compute an ordering
22982ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PARMETIS`  - use ParMeTis to compute an ordering
22992ef1f0ffSBarry Smith .  `MAT_STRUMPACK_SCOTCH`    - use Scotch to compute an ordering
23002ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PTSCOTCH`  - use parallel Scotch to compute an ordering
230129e0a805SPieter Ghysels .  `MAT_STRUMPACK_RCM`       - use an RCM ordering
230229e0a805SPieter Ghysels .  `MAT_STRUMPACK_GEOMETRIC` - use a geometric ordering (needs mesh info from user)
230329e0a805SPieter Ghysels .  `MAT_STRUMPACK_AMD`       - approximate minimum degree
230429e0a805SPieter Ghysels .  `MAT_STRUMPACK_MMD`       - multiple minimum degree
230529e0a805SPieter Ghysels .  `MAT_STRUMPACK_AND`       - approximate nested dissection
230629e0a805SPieter Ghysels .  `MAT_STRUMPACK_MLF`       - minimum local fill
230729e0a805SPieter Ghysels -  `MAT_STRUMPACK_SPECTRAL`  - spectral nested dissection
23082ef1f0ffSBarry Smith 
230916a05f60SBarry Smith     Level: intermediate
231016a05f60SBarry Smith 
23112ef1f0ffSBarry Smith     Developer Note:
23122ef1f0ffSBarry Smith     Should be called `MatSTRUMPACKReorderingType`
23132ef1f0ffSBarry Smith 
231429e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetReordering()`
2315542aee0fSPieter Ghysels E*/
23169371c9d4SSatish Balay typedef enum {
231729e0a805SPieter Ghysels   MAT_STRUMPACK_NATURAL,
231829e0a805SPieter Ghysels   MAT_STRUMPACK_METIS,
231929e0a805SPieter Ghysels   MAT_STRUMPACK_PARMETIS,
232029e0a805SPieter Ghysels   MAT_STRUMPACK_SCOTCH,
232129e0a805SPieter Ghysels   MAT_STRUMPACK_PTSCOTCH,
232229e0a805SPieter Ghysels   MAT_STRUMPACK_RCM,
232329e0a805SPieter Ghysels   MAT_STRUMPACK_GEOMETRIC,
232429e0a805SPieter Ghysels   MAT_STRUMPACK_AMD,
232529e0a805SPieter Ghysels   MAT_STRUMPACK_MMD,
232629e0a805SPieter Ghysels   MAT_STRUMPACK_AND,
232729e0a805SPieter Ghysels   MAT_STRUMPACK_MLF,
232829e0a805SPieter Ghysels   MAT_STRUMPACK_SPECTRAL
23299371c9d4SSatish Balay } MatSTRUMPACKReordering;
23302ef1f0ffSBarry Smith 
233134f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering);
233229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetReordering(Mat, MatSTRUMPACKReordering *);
233329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricNxyz(Mat, PetscInt, PetscInt, PetscInt);
233429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricComponents(Mat, PetscInt);
233529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricWidth(Mat, PetscInt);
2336575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool);
233729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetColPerm(Mat, PetscBool *);
233829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGPU(Mat, PetscBool);
233929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetGPU(Mat, PetscBool *);
234029e0a805SPieter Ghysels 
234129e0a805SPieter Ghysels /*E
234229e0a805SPieter Ghysels     MatSTRUMPACKCompressionType - Compression used in the approximate sparse factorization solver `MATSOLVERSTRUMPACK`
234329e0a805SPieter Ghysels 
234429e0a805SPieter Ghysels     Values:
234529e0a805SPieter Ghysels +  `MAT_STRUMPACK_COMPRESSION_TYPE_NONE`          - no compression, direct solver
234629e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_HSS`           - hierarchically semi-separable
234729e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_BLR`           - block low rank
234829e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_HODLR`         - hierarchically off-diagonal low rank (requires ButterfyPACK support, configure with --download-butterflypack)
234929e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR`     - hybrid of BLR and HODLR (requires ButterfyPACK support, configure with --download-butterflypack)
235029e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR` - hybrid of lossy (ZFP), BLR and HODLR (requires ButterfyPACK and ZFP support, configure with --download-butterflypack --download-zfp)
235129e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS`      - lossless compression (requires ZFP support, configure with --download-zfp)
235229e0a805SPieter Ghysels -  `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY`         - lossy compression (requires ZFP support, configure with --download-zfp)
235329e0a805SPieter Ghysels 
235429e0a805SPieter Ghysels     Level: intermediate
235529e0a805SPieter Ghysels 
235629e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetCompression()`
235729e0a805SPieter Ghysels E*/
235829e0a805SPieter Ghysels typedef enum {
235929e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_NONE,
236029e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_HSS,
236129e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_BLR,
236229e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_HODLR,
236329e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR,
236429e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR,
236529e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS,
236629e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY
236729e0a805SPieter Ghysels } MatSTRUMPACKCompressionType;
236829e0a805SPieter Ghysels 
236929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompression(Mat, MatSTRUMPACKCompressionType);
237029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompression(Mat, MatSTRUMPACKCompressionType *);
237129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompRelTol(Mat, PetscReal);
237229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompRelTol(Mat, PetscReal *);
237329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompAbsTol(Mat, PetscReal);
237429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompAbsTol(Mat, PetscReal *);
237529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompMinSepSize(Mat, PetscInt);
237629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompMinSepSize(Mat, PetscInt *);
237729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLeafSize(Mat, PetscInt);
237829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLeafSize(Mat, PetscInt *);
237929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLossyPrecision(Mat, PetscInt);
238029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLossyPrecision(Mat, PetscInt *);
238129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompButterflyLevels(Mat, PetscInt);
238229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompButterflyLevels(Mat, PetscInt *);
2383575704cbSPieter Ghysels #endif
2384575704cbSPieter Ghysels 
2385b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool);
23862216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *);
2387edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 13, 0, "MatBindToCPU()", ) static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg)
2388d71ae5a4SJacob Faibussowitsch {
23899371c9d4SSatish Balay   return MatBindToCPU(A, flg);
23909371c9d4SSatish Balay }
239165a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool);
2392e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *);
2393e7e92044SBarry Smith 
2394aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA
23953f9c0db1SPaul Mullowney /*E
23962ef1f0ffSBarry Smith     MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU)
23972692e278SPaul Mullowney     matrices.
2398e057df02SPaul Mullowney 
23992ef1f0ffSBarry Smith     Values:
240087497f52SBarry Smith +   `MAT_CUSPARSE_CSR` - Compressed Sparse Row
240187497f52SBarry Smith .   `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later).
240287497f52SBarry Smith -   `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later).
2403e057df02SPaul Mullowney 
2404e057df02SPaul Mullowney     Level: intermediate
2405e057df02SPaul Mullowney 
24061cc06b55SBarry Smith .seealso: [](ch_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation`
2407e057df02SPaul Mullowney E*/
2408e057df02SPaul Mullowney 
24099371c9d4SSatish Balay typedef enum {
24109371c9d4SSatish Balay   MAT_CUSPARSE_CSR,
24119371c9d4SSatish Balay   MAT_CUSPARSE_ELL,
24129371c9d4SSatish Balay   MAT_CUSPARSE_HYB
24139371c9d4SSatish Balay } MatCUSPARSEStorageFormat;
2414e057df02SPaul Mullowney 
2415e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */
2416e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[];
2417e057df02SPaul Mullowney 
24183f9c0db1SPaul Mullowney /*E
24192ef1f0ffSBarry Smith     MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU)
24202692e278SPaul Mullowney     matrices whose operation should use a particular storage format.
2421e057df02SPaul Mullowney 
24222ef1f0ffSBarry Smith     Values:
24234cf0e950SBarry Smith +   `MAT_CUSPARSE_MULT_DIAG`    - sets the storage format for the diagonal matrix in the parallel `MatMult()`
24244cf0e950SBarry Smith .   `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()`
24254cf0e950SBarry Smith .   `MAT_CUSPARSE_MULT`         - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()`
24262ef1f0ffSBarry Smith -   `MAT_CUSPARSE_ALL`          - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices
2427e057df02SPaul Mullowney 
2428e057df02SPaul Mullowney     Level: intermediate
2429e057df02SPaul Mullowney 
24301cc06b55SBarry Smith .seealso: [](ch_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat`
2431e057df02SPaul Mullowney E*/
24329371c9d4SSatish Balay typedef enum {
24339371c9d4SSatish Balay   MAT_CUSPARSE_MULT_DIAG,
24349371c9d4SSatish Balay   MAT_CUSPARSE_MULT_OFFDIAG,
24359371c9d4SSatish Balay   MAT_CUSPARSE_MULT,
24369371c9d4SSatish Balay   MAT_CUSPARSE_ALL
24379371c9d4SSatish Balay } MatCUSPARSEFormatOperation;
2438e057df02SPaul Mullowney 
243910e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
244010e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2441e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat);
2442365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool);
24435f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
24445f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
24455f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **);
24465f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **);
24475f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **);
24485f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **);
24495f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **);
24505f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **);
2451637a0070SStefano Zampini 
2452637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
2453637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
2454637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **);
2455637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **);
2456637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **);
2457637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **);
2458637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **);
2459637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **);
2460637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *);
2461d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *);
2462637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat);
24633d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *);
24642d1451d4SHong Zhang 
24652d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
24662d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
24679ae82921SPaul Mullowney #endif
24689ae82921SPaul Mullowney 
246947d993e7Ssuyashtn #ifdef PETSC_HAVE_HIP
247047d993e7Ssuyashtn /*E
24712ef1f0ffSBarry Smith     MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU)
247247d993e7Ssuyashtn     matrices.
247347d993e7Ssuyashtn 
24742ef1f0ffSBarry Smith     Values:
24752ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_CSR` - Compressed Sparse Row
24762ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_ELL` - Ellpack
24772ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format
247847d993e7Ssuyashtn 
247916a05f60SBarry Smith     Level: intermediate
248016a05f60SBarry Smith 
24811cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation`
248247d993e7Ssuyashtn E*/
248347d993e7Ssuyashtn 
248447d993e7Ssuyashtn typedef enum {
248547d993e7Ssuyashtn   MAT_HIPSPARSE_CSR,
248647d993e7Ssuyashtn   MAT_HIPSPARSE_ELL,
248747d993e7Ssuyashtn   MAT_HIPSPARSE_HYB
248847d993e7Ssuyashtn } MatHIPSPARSEStorageFormat;
248947d993e7Ssuyashtn 
249047d993e7Ssuyashtn /* these will be strings associated with enumerated type defined above */
249147d993e7Ssuyashtn PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[];
249247d993e7Ssuyashtn 
249347d993e7Ssuyashtn /*E
24942ef1f0ffSBarry Smith     MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU)
249547d993e7Ssuyashtn     matrices whose operation should use a particular storage format.
249647d993e7Ssuyashtn 
24972ef1f0ffSBarry Smith     Values:
24982ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_MULT_DIAG`    - sets the storage format for the diagonal matrix in the parallel `MatMult()`
24994cf0e950SBarry Smith .   `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()`
25002ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_MULT`         - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()`
25012ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_ALL`          - sets the storage format for all HIPSPARSE (GPU) matrices
25022ef1f0ffSBarry Smith 
250316a05f60SBarry Smith     Level: intermediate
250416a05f60SBarry Smith 
25051cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat`
250647d993e7Ssuyashtn E*/
250747d993e7Ssuyashtn typedef enum {
250847d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_DIAG,
250947d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_OFFDIAG,
251047d993e7Ssuyashtn   MAT_HIPSPARSE_MULT,
251147d993e7Ssuyashtn   MAT_HIPSPARSE_ALL
251247d993e7Ssuyashtn } MatHIPSPARSEFormatOperation;
251347d993e7Ssuyashtn 
251447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
251547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
251647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat);
251747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool);
251847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
251947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
252047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **);
252147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **);
252247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **);
252347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **);
252447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **);
252547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **);
252647d993e7Ssuyashtn 
252747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
252847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
252947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **);
253047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **);
253147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **);
253247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **);
253347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **);
253447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **);
253547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *);
253647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *);
253747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat);
25383d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *);
2539*773bf0f6SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2540*773bf0f6SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
254147d993e7Ssuyashtn #endif
254247d993e7Ssuyashtn 
2543d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL)
2544d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2545d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2546d67ff14aSKarl Rupp #endif
2547d67ff14aSKarl Rupp 
25484bf303faSJacob Faibussowitsch #if PetscDefined(HAVE_KOKKOS)
25494bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
25504bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
25514bf303faSJacob Faibussowitsch #endif
25524bf303faSJacob Faibussowitsch 
255354efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW)
2554014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec);
2555014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec);
25562a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *);
255754efbe56SHong Zhang #endif
255854efbe56SHong Zhang 
2559d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
2560d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2561d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt);
2562d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *);
2563d24d4204SJose E. Roman #endif
2564d24d4204SJose E. Roman 
2565014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *);
2566014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *);
2567014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]);
2568014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]);
2569014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***);
2570014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *);
257119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType);
2572014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]);
2573014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat);
2574d8588912SDave May 
25752ce66baaSPierre Jolivet PETSC_EXTERN PetscErrorCode MatFilter(Mat, PetscReal, PetscBool, PetscBool);
25762ce66baaSPierre Jolivet PETSC_DEPRECATED_FUNCTION(3, 20, 0, "MatFilter()", ) static inline PetscErrorCode MatChop(Mat A, PetscReal tol)
25772ce66baaSPierre Jolivet {
25782ce66baaSPierre Jolivet   return MatFilter(A, tol, PETSC_FALSE, PETSC_FALSE);
25792ce66baaSPierre Jolivet }
2580e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *);
25814325cce7SMatthew G Knepley 
2582b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **);
258353dd7562SDmitry Karpeev 
2584c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat);
2585c094ef40SMatthew G. Knepley 
258602218ef1SBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderMerge(Mat, Mat *);
2587539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *);
25881a2c6b5cSJunchao Zhang 
25897ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *);
259072833a62Smarkadams4 
2591e02fb3cdSMark Adams PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, PetscInt, PetscInt[], Mat *);
259258c11ad4SPierre Jolivet PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat, PetscBool);
2593ad6ad4e1SHansol  Suh 
2594d16ceb75SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *);
25953444e80cSBarry Smith 
25963444e80cSBarry Smith PETSC_EXTERN PetscErrorCode MatSetHPL(Mat, int);
25973444e80cSBarry Smith #define PETSCBMHPL "hpl"
2598