1*8a3eeb68SSatish Balay /* $Id: mat.h,v 1.188 2000/04/09 03:11:53 bsmith Exp balay $ */ 22eac72dbSBarry Smith /* 32eac72dbSBarry Smith Include file for the matrix component of PETSc 42eac72dbSBarry Smith */ 5a009ddc3SBarry Smith #ifndef __MAT_H 6a009ddc3SBarry Smith #define __MAT_H 78ed539a5SBarry Smith #include "vec.h" 82eac72dbSBarry Smith 99cd28387SBarry Smith #define MAT_COOKIE PETSC_COOKIE+5 10f0479e8cSBarry Smith 11e2a1c21fSSatish Balay typedef struct _p_Mat* Mat; 122eac72dbSBarry Smith 13f1d1b154SWilliam Gropp #define MAX_MATRIX_TYPES 14 14639f9d9dSBarry Smith /* 15639f9d9dSBarry Smith The default matrix data storage formats and routines to create them. 16f1d1b154SWilliam Gropp 17f1d1b154SWilliam Gropp MATLASTTYPE is "end-of-list" marker that can be used to check that 18f1d1b154SWilliam Gropp MAX_MATRIX_TYPES is large enough. The rule is 19f1d1b154SWilliam Gropp MAX_MATRIX_TYPES >= MATLASTTYPE . 20f1d1b154SWilliam Gropp 21f1d1b154SWilliam Gropp To do: add a test program that checks the consistency of these values. 22639f9d9dSBarry Smith */ 234ac9ca07SLois Curfman McInnes typedef enum { MATSAME=-1, MATSEQDENSE, MATSEQAIJ, MATMPIAIJ, MATSHELL, 2484cb2905SBarry Smith MATMPIROWBS, MATSEQBDIAG, MATMPIBDIAG, MATMPIDENSE, MATSEQBAIJ, 253eda8832SBarry Smith MATMPIBAIJ, MATMPICSN, MATSEQCSN, MATMPIADJ, MATSEQSBAIJ, 26*8a3eeb68SSatish Balay MATMPISBAIJ, MATLASTTYPE } MatType; 2728988994SBarry Smith 28b12f92e5SBarry Smith extern int MatCreate(MPI_Comm,int,int,int,int,Mat*); 29df6e0191SLois Curfman McInnes extern int MatCreateSeqDense(MPI_Comm,int,int,Scalar*,Mat*); 30d5bc1036SLois Curfman McInnes extern int MatCreateMPIDense(MPI_Comm,int,int,int,int,Scalar*,Mat*); 31de7da479SBarry Smith extern int MatCreateSeqAIJ(MPI_Comm,int,int,int,int*,Mat*); 329717bf64SBarry Smith extern int MatCreateMPIAIJ(MPI_Comm,int,int,int,int,int,int*,int,int*,Mat*); 33cfe223acSLois Curfman McInnes extern int MatCreateMPIRowbs(MPI_Comm,int,int,int,int*,void*,Mat*); 34f26ada1bSBarry Smith extern int MatCreateSeqBDiag(MPI_Comm,int,int,int,int,int*,Scalar**,Mat*); 35f26ada1bSBarry Smith extern int MatCreateMPIBDiag(MPI_Comm,int,int,int,int,int,int*,Scalar**,Mat*); 36df8a92d1SBarry Smith extern int MatCreateSeqBAIJ(MPI_Comm,int,int,int,int,int*,Mat*); 37eba03b66SLois Curfman McInnes extern int MatCreateMPIBAIJ(MPI_Comm,int,int,int,int,int,int,int*,int,int*,Mat*); 383eda8832SBarry Smith extern int MatCreateMPIAdj(MPI_Comm,int,int,int*,int*,int *,Mat*); 39*8a3eeb68SSatish Balay extern int MatCreateSeqSBAIJ(MPI_Comm,int,int,int,int,int*,Mat*); 40*8a3eeb68SSatish Balay extern int MatCreateMPISBAIJ(MPI_Comm,int,int,int,int,int,int,int*,int,int*,Mat*); 41*8a3eeb68SSatish Balay 429717bf64SBarry Smith 437b80b807SBarry Smith extern int MatDestroy(Mat); 447b80b807SBarry Smith 457ddc982cSLois Curfman McInnes extern int MatCreateShell(MPI_Comm,int,int,int,int,void *,Mat*); 4617116c71SBarry Smith extern int MatShellGetContext(Mat,void **); 4721c89e3eSBarry Smith 48ec0117caSBarry Smith extern int MatPrintHelp(Mat); 49cda55fadSBarry Smith extern int MatGetMaps(Mat,Map*,Map*); 50ec0117caSBarry Smith 518ed539a5SBarry Smith /* ------------------------------------------------------------*/ 52ee50ffe9SBarry Smith extern int MatSetValues(Mat,int,int*,int,int*,Scalar*,InsertMode); 5395e63191SSatish Balay extern int MatSetValuesBlocked(Mat,int,int*,int,int*,Scalar*,InsertMode); 5484cb2905SBarry Smith 556d4a8577SBarry Smith typedef enum {MAT_FLUSH_ASSEMBLY=1,MAT_FINAL_ASSEMBLY=0} MatAssemblyType; 56ee50ffe9SBarry Smith extern int MatAssemblyBegin(Mat,MatAssemblyType); 57ee50ffe9SBarry Smith extern int MatAssemblyEnd(Mat,MatAssemblyType); 584f9c727eSBarry Smith extern int MatAssembled(Mat,PetscTruth*); 594f9c727eSBarry Smith 60b951964fSBarry Smith #define MatSetValue(v,i,j,va,mode) \ 61b951964fSBarry Smith {int _ierr,_row = i,_col = j; Scalar _va = va; \ 62b951964fSBarry Smith _ierr = MatSetValues(v,1,&_row,1,&_col,&_va,mode);CHKERRQ(_ierr); \ 63b951964fSBarry Smith } 64ea06a074SBarry Smith #define MatGetValue(v,i,j,va) \ 65ea06a074SBarry Smith {int _ierr,_row = i,_col = j; \ 66ea06a074SBarry Smith _ierr = MatGetValues(v,1,&_row,1,&_col,&va);CHKERRQ(_ierr); \ 67ea06a074SBarry Smith } 686ca9ecd3SBarry Smith /* 696ca9ecd3SBarry Smith Any additions/changes here MUST also be made in include/finclude/mat.h 706ca9ecd3SBarry Smith */ 716d4a8577SBarry Smith typedef enum {MAT_ROW_ORIENTED=1,MAT_COLUMN_ORIENTED=2,MAT_ROWS_SORTED=4, 726d4a8577SBarry Smith MAT_COLUMNS_SORTED=8,MAT_NO_NEW_NONZERO_LOCATIONS=16, 736d4a8577SBarry Smith MAT_YES_NEW_NONZERO_LOCATIONS=32,MAT_SYMMETRIC=64, 746ca9ecd3SBarry Smith MAT_STRUCTURALLY_SYMMETRIC=65,MAT_NO_NEW_DIAGONALS=66, 756ca9ecd3SBarry Smith MAT_YES_NEW_DIAGONALS=67,MAT_INODE_LIMIT_1=68,MAT_INODE_LIMIT_2=69, 766ca9ecd3SBarry Smith MAT_INODE_LIMIT_3=70,MAT_INODE_LIMIT_4=71,MAT_INODE_LIMIT_5=72, 776ca9ecd3SBarry Smith MAT_IGNORE_OFF_PROC_ENTRIES=73,MAT_ROWS_UNSORTED=74, 784787f768SSatish Balay MAT_COLUMNS_UNSORTED=75,MAT_NEW_NONZERO_LOCATION_ERR=76, 797c922b88SBarry Smith MAT_NEW_NONZERO_ALLOCATION_ERR=77,MAT_USE_HASH_TABLE=78, 802bad1931SBarry Smith MAT_KEEP_ZEROED_ROWS=79,MAT_IGNORE_ZERO_ENTRIES=80,MAT_USE_INODES=81, 812bad1931SBarry Smith MAT_DO_NOT_USE_INODES} MatOption; 82ee50ffe9SBarry Smith extern int MatSetOption(Mat,MatOption); 834b0e389bSBarry Smith extern int MatGetType(Mat,MatType*,char**); 8456cd22aeSBarry Smith extern int MatGetTypeFromOptions(MPI_Comm,char*,MatType*,PetscTruth*); 8584cb2905SBarry Smith 86ee50ffe9SBarry Smith extern int MatGetValues(Mat,int,int*,int,int*,Scalar*); 878ed539a5SBarry Smith extern int MatGetRow(Mat,int,int *,int **,Scalar**); 888ed539a5SBarry Smith extern int MatRestoreRow(Mat,int,int *,int **,Scalar**); 8977c4ece6SBarry Smith extern int MatGetColumn(Mat,int,int *,int **,Scalar**); 9077c4ece6SBarry Smith extern int MatRestoreColumn(Mat,int,int *,int **,Scalar**); 915cd4b4e6SBarry Smith extern int MatGetColumnVector(Mat,Vec,int); 9264e87e97SBarry Smith extern int MatGetArray(Mat,Scalar **); 9309883261SBarry Smith extern int MatRestoreArray(Mat,Scalar **); 94870582ebSSatish Balay extern int MatGetBlockSize(Mat,int *); 957b80b807SBarry Smith 968ed539a5SBarry Smith extern int MatMult(Mat,Vec,Vec); 978ed539a5SBarry Smith extern int MatMultAdd(Mat,Vec,Vec,Vec); 987c922b88SBarry Smith extern int MatMultTranspose(Mat,Vec,Vec); 997c922b88SBarry Smith extern int MatMultTransposeAdd(Mat,Vec,Vec,Vec); 1002eac72dbSBarry Smith 1012e8a6d31SBarry Smith typedef enum {MAT_DO_NOT_COPY_VALUES,MAT_COPY_VALUES} MatDuplicateOption; 1022e8a6d31SBarry Smith 1037b80b807SBarry Smith extern int MatConvert(Mat,MatType,Mat*); 1042e8a6d31SBarry Smith extern int MatDuplicate(Mat,MatDuplicateOption,Mat*); 10594a9d846SBarry Smith extern int MatConvertRegister(MatType,MatType,int (*)(Mat,MatType,Mat*)); 106cf256101SBarry Smith extern int MatConvertRegisterAll(void); 10794a9d846SBarry Smith 108cb5b572fSBarry Smith typedef enum {SAME_NONZERO_PATTERN,DIFFERENT_NONZERO_PATTERN,SAME_PRECONDITIONER} MatStructure; 109cb5b572fSBarry Smith 110cb5b572fSBarry Smith extern int MatCopy(Mat,Mat,MatStructure); 1117b80b807SBarry Smith extern int MatView(Mat,Viewer); 1127b80b807SBarry Smith extern int MatLoad(Viewer,MatType,Mat*); 11394a9d846SBarry Smith extern int MatLoadRegister(MatType,int (*)(Viewer,MatType,Mat*)); 114cf256101SBarry Smith extern int MatLoadRegisterAll(void); 1157b80b807SBarry Smith 116d4fbbf0eSBarry Smith extern int MatGetRowIJ(Mat,int,PetscTruth,int*,int **,int **,PetscTruth *); 117d4fbbf0eSBarry Smith extern int MatRestoreRowIJ(Mat,int,PetscTruth,int *,int **,int **,PetscTruth *); 118d4fbbf0eSBarry Smith extern int MatGetColumnIJ(Mat,int,PetscTruth,int*,int **,int **,PetscTruth *); 119d4fbbf0eSBarry Smith extern int MatRestoreColumnIJ(Mat,int,PetscTruth,int *,int **,int **,PetscTruth *); 120d4fbbf0eSBarry Smith 1211d607229SLois Curfman McInnes /* 1221d607229SLois Curfman McInnes Context of matrix information, used with MatGetInfo() 1231d607229SLois Curfman McInnes Note: If any entries are added to this context, be sure 12426cd32c0SSatish Balay to adjust MAT_INFO_SIZE in finclude/mat.h 1251d607229SLois Curfman McInnes */ 1264e220ebcSLois Curfman McInnes typedef struct { 12737f753daSBarry Smith PLogDouble rows_global,columns_global; /* number of global rows and columns */ 12837f753daSBarry Smith PLogDouble rows_local,columns_local; /* number of local rows and columns */ 12937f753daSBarry Smith PLogDouble block_size; /* block size */ 13037f753daSBarry Smith PLogDouble nz_allocated,nz_used,nz_unneeded; /* number of nonzeros */ 13137f753daSBarry Smith PLogDouble memory; /* memory allocated */ 13237f753daSBarry Smith PLogDouble assemblies; /* number of matrix assemblies */ 13337f753daSBarry Smith PLogDouble mallocs; /* number of mallocs during MatSetValues() */ 13437f753daSBarry Smith PLogDouble fill_ratio_given,fill_ratio_needed; /* fill ratio for LU/ILU */ 13537f753daSBarry Smith PLogDouble factor_mallocs; /* number of mallocs during factorization */ 1364e220ebcSLois Curfman McInnes } MatInfo; 1374e220ebcSLois Curfman McInnes 1387b80b807SBarry Smith typedef enum {MAT_LOCAL=1,MAT_GLOBAL_MAX=2,MAT_GLOBAL_SUM=3} MatInfoType; 1394e220ebcSLois Curfman McInnes extern int MatGetInfo(Mat,MatInfoType,MatInfo*); 14077c4ece6SBarry Smith extern int MatValid(Mat,PetscTruth*); 1417b80b807SBarry Smith extern int MatGetDiagonal(Mat,Vec); 142cd8486b4SBarry Smith extern int MatTranspose(Mat,Mat*); 1430513a670SBarry Smith extern int MatPermute(Mat,IS,IS,Mat *); 144f4c33d5aSBarry Smith extern int MatDiagonalScale(Mat,Vec,Vec); 1458b3e568eSBarry Smith extern int MatDiagonalShift(Mat,Vec); 14677c4ece6SBarry Smith extern int MatEqual(Mat,Mat,PetscTruth*); 1477b80b807SBarry Smith 1487b80b807SBarry Smith extern int MatNorm(Mat,NormType,double *); 1497b80b807SBarry Smith extern int MatZeroEntries(Mat); 1507b80b807SBarry Smith extern int MatZeroRows(Mat,IS,Scalar*); 1517b80b807SBarry Smith extern int MatZeroColumns(Mat,IS,Scalar*); 1527b80b807SBarry Smith 1535ef9f2a5SBarry Smith extern int MatUseScaledForm(Mat,PetscTruth); 1545ef9f2a5SBarry Smith extern int MatScaleSystem(Mat,Vec,Vec); 1555ef9f2a5SBarry Smith extern int MatUnScaleSystem(Mat,Vec,Vec); 1565ef9f2a5SBarry Smith 1577b80b807SBarry Smith extern int MatGetSize(Mat,int*,int*); 1587b80b807SBarry Smith extern int MatGetLocalSize(Mat,int*,int*); 1597b80b807SBarry Smith extern int MatGetOwnershipRange(Mat,int*,int*); 1607b80b807SBarry Smith 1617b2a1423SBarry Smith typedef enum {MAT_INITIAL_MATRIX,MAT_REUSE_MATRIX} MatReuse; 1627b2a1423SBarry Smith extern int MatGetSubMatrices(Mat,int,IS *,IS *,MatReuse,Mat **); 163905e6a2fSBarry Smith extern int MatDestroyMatrices(int,Mat **); 1647b2a1423SBarry Smith extern int MatGetSubMatrix(Mat,IS,IS,int,MatReuse,Mat *); 1658efafbd8SBarry Smith 1667b80b807SBarry Smith extern int MatIncreaseOverlap(Mat,int,IS *,int); 1677b80b807SBarry Smith 1687b80b807SBarry Smith extern int MatAXPY(Scalar *,Mat,Mat); 16986787d2cSSatish Balay extern int MatAYPX(Scalar *,Mat,Mat); 1707b80b807SBarry Smith extern int MatCompress(Mat); 1717b80b807SBarry Smith 172052efed2SBarry Smith extern int MatScale(Scalar *,Mat); 173052efed2SBarry Smith extern int MatShift(Scalar *,Mat); 174052efed2SBarry Smith 175d4bb536fSBarry Smith extern int MatSetLocalToGlobalMapping(Mat,ISLocalToGlobalMapping); 176497365bdSBarry Smith extern int MatSetLocalToGlobalMappingBlock(Mat,ISLocalToGlobalMapping); 17790f02eecSBarry Smith extern int MatZeroRowsLocal(Mat,IS,Scalar*); 17890f02eecSBarry Smith extern int MatSetValuesLocal(Mat,int,int*,int,int*,Scalar*,InsertMode); 1794a387fc0SSatish Balay extern int MatSetValuesBlockedLocal(Mat,int,int*,int,int*,Scalar*,InsertMode); 18090f02eecSBarry Smith 181649db694SBarry Smith extern int MatSetStashInitialSize(Mat,int,int); 182649db694SBarry Smith 1837c922b88SBarry Smith extern int MatInterpolateAdd(Mat,Vec,Vec,Vec); 1847c922b88SBarry Smith extern int MatInterpolate(Mat,Vec,Vec); 1857c922b88SBarry Smith extern int MatRestrict(Mat,Vec,Vec); 1867c922b88SBarry Smith 1877c922b88SBarry Smith /* 1887c922b88SBarry Smith These three macros MUST be used together. The third one closes the open { of the first one 1897c922b88SBarry Smith */ 1907c922b88SBarry Smith #define MatPreallocateInitialize(comm,nrows,ncols,dnz,onz) \ 1917c922b88SBarry Smith { \ 1927c922b88SBarry Smith int __ierr,__tmp = (nrows),__ctmp = (ncols),__rstart,__start,__end; \ 1937c922b88SBarry Smith dnz = (int*)PetscMalloc(2*__tmp*sizeof(int));CHKPTRQ(dnz);onz = dnz + __tmp;\ 1947c922b88SBarry Smith __ierr = PetscMemzero(dnz,2*__tmp*sizeof(int));CHKERRQ(__ierr);\ 1957c922b88SBarry Smith __ierr = MPI_Scan(&__ctmp,&__end,1,MPI_INT,MPI_SUM,comm);CHKERRQ(__ierr); __start = __end - __ctmp;\ 1967c922b88SBarry Smith __ierr = MPI_Scan(&__tmp,&__rstart,1,MPI_INT,MPI_SUM,comm);CHKERRQ(__ierr); __rstart = __rstart - __tmp; 1977c922b88SBarry Smith 1987c922b88SBarry Smith #define MatPreallocateSet(row,nc,cols,dnz,onz)\ 1997c922b88SBarry Smith { int __i; \ 2007c922b88SBarry Smith for (__i=0; __i<nc; __i++) {\ 2017c922b88SBarry Smith if (cols[__i] < __start || cols[__i] >= __end) onz[row - __rstart]++; \ 2027c922b88SBarry Smith }\ 2037c922b88SBarry Smith dnz[row - __rstart] = nc - onz[row - __rstart];\ 2047c922b88SBarry Smith } 2057c922b88SBarry Smith 2067c922b88SBarry Smith #define MatPreallocateFinalize(dnz,onz) __ierr = PetscFree(dnz);CHKERRQ(__ierr);} 2077c922b88SBarry Smith 2087b80b807SBarry Smith /* Routines unique to particular data structures */ 2097b80b807SBarry Smith extern int MatBDiagGetData(Mat,int*,int*,int**,int**,Scalar***); 2106f0482c6SBarry Smith extern int MatSeqAIJSetColumnIndices(Mat,int *); 2116f0482c6SBarry Smith extern int MatSeqBAIJSetColumnIndices(Mat,int *); 21236db0b34SBarry Smith extern int MatCreateSeqAIJWithArrays(MPI_Comm,int,int,int*,int*,Scalar *,Mat*); 2137b80b807SBarry Smith 2142e8a6d31SBarry Smith extern int MatStoreValues(Mat); 2152e8a6d31SBarry Smith extern int MatRetrieveValues(Mat); 2162e8a6d31SBarry Smith 2177b80b807SBarry Smith /* 2187b80b807SBarry Smith These routines are not usually accessed directly, rather solving is 2197b80b807SBarry Smith done through the SLES, KSP and PC interfaces. 2207b80b807SBarry Smith */ 2217b80b807SBarry Smith 222b12f92e5SBarry Smith typedef char* MatOrderingType; 223b12f92e5SBarry Smith #define MATORDERING_NATURAL "natural" 224b12f92e5SBarry Smith #define MATORDERING_ND "nd" 225b12f92e5SBarry Smith #define MATORDERING_1WD "1wd" 226b12f92e5SBarry Smith #define MATORDERING_RCM "rcm" 227b12f92e5SBarry Smith #define MATORDERING_QMD "qmd" 228b12f92e5SBarry Smith #define MATORDERING_ROWLENGTH "rowlength" 229b12f92e5SBarry Smith 23091e9ee9fSBarry Smith extern int MatGetOrdering(Mat,MatOrderingType,IS*,IS*); 231f1af5d2fSBarry Smith extern int MatOrderingRegister(char*,char*,char*,int(*)(Mat,MatOrderingType,IS*,IS*)); 232aa482453SBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 233f1af5d2fSBarry Smith #define MatOrderingRegisterDynamic(a,b,c,d) MatOrderingRegister(a,b,c,0) 234b12f92e5SBarry Smith #else 235f1af5d2fSBarry Smith #define MatOrderingRegisterDynamic(a,b,c,d) MatOrderingRegister(a,b,c,d) 236b12f92e5SBarry Smith #endif 23791e9ee9fSBarry Smith extern int MatOrderingRegisterDestroy(void); 238b12f92e5SBarry Smith extern int MatOrderingRegisterAll(char*); 2392bad1931SBarry Smith extern PetscTruth MatOrderingRegisterAllCalled; 240d4fbbf0eSBarry Smith 241a2ce50c7SBarry Smith extern int MatReorderForNonzeroDiagonal(Mat,double,IS,IS); 242a2ce50c7SBarry Smith 243a2ce50c7SBarry Smith extern int MatCholeskyFactor(Mat,IS,double); 244a2ce50c7SBarry Smith extern int MatCholeskyFactorSymbolic(Mat,IS,double,Mat*); 245a2ce50c7SBarry Smith extern int MatCholeskyFactorNumeric(Mat,Mat*); 246a2ce50c7SBarry Smith 2475ef9f2a5SBarry Smith /* 2485ef9f2a5SBarry Smith Context of matrix information, used with MatILUFactor() and MatILUFactorSymbolic() 2495ef9f2a5SBarry Smith Note: If any entries are added to this context, be sure 2505ef9f2a5SBarry Smith to adjust MAT_ILUINFO_SIZE in finclude/mat.h 2515ef9f2a5SBarry Smith 2525ef9f2a5SBarry Smith Note: The integer values below are passed in double to allow easy use from 2535ef9f2a5SBarry Smith Fortran 2545ef9f2a5SBarry Smith */ 2555ef9f2a5SBarry Smith typedef struct { 2565ef9f2a5SBarry Smith double levels; /* ILU(levels) */ 2575ef9f2a5SBarry Smith double fill; /* expected fill; nonzeros in factored matrix/nonzeros in original matrix*/ 2585ef9f2a5SBarry Smith double diagonal_fill; /* force diagonal to fill in if initially not filled */ 25936db0b34SBarry Smith 26036db0b34SBarry Smith double dt; /* drop tolerance */ 26136db0b34SBarry Smith double dtcol; /* tolerance for pivoting */ 26236db0b34SBarry Smith double dtcount; /* maximum nonzeros to be allowed per row */ 2635ef9f2a5SBarry Smith } MatILUInfo; 2645ef9f2a5SBarry Smith 26549d8b64dSBarry Smith extern int MatLUFactor(Mat,IS,IS,double); 2665ef9f2a5SBarry Smith extern int MatILUFactor(Mat,IS,IS,MatILUInfo*); 26764051cb3SBarry Smith extern int MatLUFactorSymbolic(Mat,IS,IS,double,Mat*); 2685ef9f2a5SBarry Smith extern int MatILUFactorSymbolic(Mat,IS,IS,MatILUInfo*,Mat*); 26964051cb3SBarry Smith extern int MatIncompleteCholeskyFactorSymbolic(Mat,IS,double,int,Mat*); 27020563c6bSBarry Smith extern int MatLUFactorNumeric(Mat,Mat*); 27136db0b34SBarry Smith extern int MatILUDTFactor(Mat,MatILUInfo*,IS,IS,Mat *); 272a2ce50c7SBarry Smith 2738ed539a5SBarry Smith extern int MatSolve(Mat,Vec,Vec); 27422169318SLois Curfman McInnes extern int MatForwardSolve(Mat,Vec,Vec); 27522169318SLois Curfman McInnes extern int MatBackwardSolve(Mat,Vec,Vec); 2768ed539a5SBarry Smith extern int MatSolveAdd(Mat,Vec,Vec,Vec); 2777c922b88SBarry Smith extern int MatSolveTranspose(Mat,Vec,Vec); 2787c922b88SBarry Smith extern int MatSolveTransposeAdd(Mat,Vec,Vec,Vec); 2798ed539a5SBarry Smith 280bb5a7306SBarry Smith extern int MatSetUnfactored(Mat); 281bb5a7306SBarry Smith 282bb1eb677SSatish Balay /* MatSORType may be bitwise ORd together, so do not change the numbers */ 283bb1eb677SSatish Balay 284ee50ffe9SBarry Smith typedef enum {SOR_FORWARD_SWEEP=1,SOR_BACKWARD_SWEEP=2,SOR_SYMMETRIC_SWEEP=3, 285ee50ffe9SBarry Smith SOR_LOCAL_FORWARD_SWEEP=4,SOR_LOCAL_BACKWARD_SWEEP=8, 286ee50ffe9SBarry Smith SOR_LOCAL_SYMMETRIC_SWEEP=12,SOR_ZERO_INITIAL_GUESS=16, 28784cb2905SBarry Smith SOR_EISENSTAT=32,SOR_APPLY_UPPER=64,SOR_APPLY_LOWER=128} MatSORType; 288ca9b4cbeSLois Curfman McInnes extern int MatRelax(Mat,Vec,double,MatSORType,double,int,Vec); 2898ed539a5SBarry Smith 290d4fbbf0eSBarry Smith /* 291639f9d9dSBarry Smith These routines are for efficiently computing Jacobians via finite differences. 292639f9d9dSBarry Smith */ 293b12f92e5SBarry Smith 294b12f92e5SBarry Smith typedef char* MatColoringType; 295b12f92e5SBarry Smith #define MATCOLORING_NATURAL "natural" 296b12f92e5SBarry Smith #define MATCOLORING_SL "sl" 297b12f92e5SBarry Smith #define MATCOLORING_LF "lf" 298b12f92e5SBarry Smith #define MATCOLORING_ID "id" 299b12f92e5SBarry Smith 300df8cb225SBarry Smith extern int MatGetColoring(Mat,MatColoringType,ISColoring*); 301f1af5d2fSBarry Smith extern int MatColoringRegister(char*,char*,char*,int(*)(Mat,MatColoringType,ISColoring *)); 302aa482453SBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 303f1af5d2fSBarry Smith #define MatColoringRegisterDynamic(a,b,c,d) MatColoringRegister(a,b,c,0) 304b12f92e5SBarry Smith #else 305f1af5d2fSBarry Smith #define MatColoringRegisterDynamic(a,b,c,d) MatColoringRegister(a,b,c,d) 306b12f92e5SBarry Smith #endif 307b12f92e5SBarry Smith extern int MatColoringRegisterAll(char *); 3082bad1931SBarry Smith extern PetscTruth MatColoringRegisterAllCalled; 309cf256101SBarry Smith extern int MatColoringRegisterDestroy(void); 310639f9d9dSBarry Smith extern int MatColoringPatch(Mat,int,int *,ISColoring*); 311639f9d9dSBarry Smith 31284cb2905SBarry Smith /* 31384cb2905SBarry Smith Data structures used to compute Jacobian vector products 31484cb2905SBarry Smith efficiently using finite differences. 31584cb2905SBarry Smith */ 3161a0a18cdSSatish Balay #define MAT_FDCOLORING_COOKIE PETSC_COOKIE + 23 317639f9d9dSBarry Smith 318e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring; 319639f9d9dSBarry Smith 320639f9d9dSBarry Smith extern int MatFDColoringCreate(Mat,ISColoring,MatFDColoring *); 321639f9d9dSBarry Smith extern int MatFDColoringDestroy(MatFDColoring); 322639f9d9dSBarry Smith extern int MatFDColoringView(MatFDColoring,Viewer); 3236eb013d7SBarry Smith extern int MatFDColoringSetFunction(MatFDColoring,int (*)(void),void*); 324639f9d9dSBarry Smith extern int MatFDColoringSetParameters(MatFDColoring,double,double); 325005c665bSBarry Smith extern int MatFDColoringSetFrequency(MatFDColoring,int); 3268bba8e72SBarry Smith extern int MatFDColoringGetFrequency(MatFDColoring,int*); 327639f9d9dSBarry Smith extern int MatFDColoringSetFromOptions(MatFDColoring); 328639f9d9dSBarry Smith extern int MatFDColoringPrintHelp(MatFDColoring); 329005c665bSBarry Smith extern int MatFDColoringApply(Mat,MatFDColoring,Vec,MatStructure*,void *); 3306eb013d7SBarry Smith extern int MatFDColoringApplyTS(Mat,MatFDColoring,double,Vec,MatStructure*,void *); 331639f9d9dSBarry Smith 332639f9d9dSBarry Smith /* 3330752156aSBarry Smith These routines are for partitioning matrices: currently used only 3343eda8832SBarry Smith for adjacency matrix, MatCreateMPIAdj(). 3350752156aSBarry Smith */ 33691e9ee9fSBarry Smith #define MATPARTITIONING_COOKIE PETSC_COOKIE + 25 337ca161407SBarry Smith 33891e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning; 3392aabb6bbSBarry Smith typedef char* MatPartitioningType; 3402aabb6bbSBarry Smith #define MATPARTITIONING_CURRENT "current" 3412aabb6bbSBarry Smith #define MATPARTITIONING_PARMETIS "parmetis" 342ca161407SBarry Smith 34391e9ee9fSBarry Smith extern int MatPartitioningCreate(MPI_Comm,MatPartitioning*); 34491e9ee9fSBarry Smith extern int MatPartitioningSetType(MatPartitioning,MatPartitioningType); 34591e9ee9fSBarry Smith extern int MatPartitioningSetAdjacency(MatPartitioning,Mat); 3462bad1931SBarry Smith extern int MatPartitioningSetVertexWeights(MatPartitioning,int*); 34791e9ee9fSBarry Smith extern int MatPartitioningApply(MatPartitioning,IS*); 34891e9ee9fSBarry Smith extern int MatPartitioningDestroy(MatPartitioning); 3492aabb6bbSBarry Smith 350f1af5d2fSBarry Smith extern int MatPartitioningRegister(char*,char*,char*,int(*)(MatPartitioning)); 351aa482453SBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 352f1af5d2fSBarry Smith #define MatPartitioningRegisterDynamic(a,b,c,d) MatPartitioningRegister(a,b,c,0) 3532aabb6bbSBarry Smith #else 354f1af5d2fSBarry Smith #define MatPartitioningRegisterDynamic(a,b,c,d) MatPartitioningRegister(a,b,c,d) 3552aabb6bbSBarry Smith #endif 3562aabb6bbSBarry Smith 3572aabb6bbSBarry Smith extern int MatPartitioningRegisterAll(char *); 3582bad1931SBarry Smith extern PetscTruth MatPartitioningRegisterAllCalled; 35991e9ee9fSBarry Smith extern int MatPartitioningRegisterDestroy(void); 3602bad1931SBarry Smith 36191e9ee9fSBarry Smith extern int MatPartitioningView(MatPartitioning,Viewer); 36291e9ee9fSBarry Smith extern int MatPartitioningSetFromOptions(MatPartitioning); 36391e9ee9fSBarry Smith extern int MatPartitioningPrintHelp(MatPartitioning); 364e905bf0dSBarry Smith extern int MatPartitioningGetType(MatPartitioning,MatPartitioningType*); 365ca161407SBarry Smith 36691e9ee9fSBarry Smith extern int MatPartitioningParmetisSetCoarseSequential(MatPartitioning); 3670752156aSBarry Smith 3680752156aSBarry Smith /* 36926cd32c0SSatish Balay If you add entries here you must also add them to finclude/mat.h 370d4fbbf0eSBarry Smith */ 3711c1c02c0SLois Curfman McInnes typedef enum { MATOP_SET_VALUES=0, 3721c1c02c0SLois Curfman McInnes MATOP_GET_ROW=1, 3731c1c02c0SLois Curfman McInnes MATOP_RESTORE_ROW=2, 3741c1c02c0SLois Curfman McInnes MATOP_MULT=3, 3751c1c02c0SLois Curfman McInnes MATOP_MULT_ADD=4, 3767c922b88SBarry Smith MATOP_MULT_TRANSPOSE=5, 3777c922b88SBarry Smith MATOP_MULT_TRANSPOSE_ADD=6, 3781c1c02c0SLois Curfman McInnes MATOP_SOLVE=7, 3791c1c02c0SLois Curfman McInnes MATOP_SOLVE_ADD=8, 3807c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE=9, 3817c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE_ADD=10, 3821c1c02c0SLois Curfman McInnes MATOP_LUFACTOR=11, 3831c1c02c0SLois Curfman McInnes MATOP_CHOLESKYFACTOR=12, 3841c1c02c0SLois Curfman McInnes MATOP_RELAX=13, 3851c1c02c0SLois Curfman McInnes MATOP_TRANSPOSE=14, 3861c1c02c0SLois Curfman McInnes MATOP_GETINFO=15, 3871c1c02c0SLois Curfman McInnes MATOP_EQUAL=16, 3881c1c02c0SLois Curfman McInnes MATOP_GET_DIAGONAL=17, 3891c1c02c0SLois Curfman McInnes MATOP_DIAGONAL_SCALE=18, 3901c1c02c0SLois Curfman McInnes MATOP_NORM=19, 3911c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_BEGIN=20, 3921c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_END=21, 3931c1c02c0SLois Curfman McInnes MATOP_COMPRESS=22, 3941c1c02c0SLois Curfman McInnes MATOP_SET_OPTION=23, 3951c1c02c0SLois Curfman McInnes MATOP_ZERO_ENTRIES=24, 3961c1c02c0SLois Curfman McInnes MATOP_ZERO_ROWS=25, 3971c1c02c0SLois Curfman McInnes MATOP_LUFACTOR_SYMBOLIC=26, 3981c1c02c0SLois Curfman McInnes MATOP_LUFACTOR_NUMERIC=27, 3991c1c02c0SLois Curfman McInnes MATOP_CHOLESKY_FACTOR_SYMBOLIC=28, 4001c1c02c0SLois Curfman McInnes MATOP_CHOLESKY_FACTOR_NUMERIC=29, 4011c1c02c0SLois Curfman McInnes MATOP_GET_SIZE=30, 4021c1c02c0SLois Curfman McInnes MATOP_GET_LOCAL_SIZE=31, 4031c1c02c0SLois Curfman McInnes MATOP_GET_OWNERSHIP_RANGE=32, 4041c1c02c0SLois Curfman McInnes MATOP_ILUFACTOR_SYMBOLIC=33, 4051c1c02c0SLois Curfman McInnes MATOP_INCOMPLETECHOLESKYFACTOR_SYMBOLIC=34, 4061c1c02c0SLois Curfman McInnes MATOP_GET_ARRAY=35, 4071c1c02c0SLois Curfman McInnes MATOP_RESTORE_ARRAY=36, 4087bf97ca4SSatish Balay 409005c665bSBarry Smith MATOP_CONVERT_SAME_TYPE=37, 410005c665bSBarry Smith MATOP_FORWARD_SOLVE=38, 411005c665bSBarry Smith MATOP_BACKWARD_SOLVE=39, 412005c665bSBarry Smith MATOP_ILUFACTOR=40, 413005c665bSBarry Smith MATOP_INCOMPLETECHOLESKYFACTOR=41, 414005c665bSBarry Smith MATOP_AXPY=42, 415005c665bSBarry Smith MATOP_GET_SUBMATRICES=43, 416005c665bSBarry Smith MATOP_INCREASE_OVERLAP=44, 417005c665bSBarry Smith MATOP_GET_VALUES=45, 418005c665bSBarry Smith MATOP_COPY=46, 419005c665bSBarry Smith MATOP_PRINT_HELP=47, 420005c665bSBarry Smith MATOP_SCALE=48, 421005c665bSBarry Smith MATOP_SHIFT=49, 422005c665bSBarry Smith MATOP_DIAGONAL_SHIFT=50, 423005c665bSBarry Smith MATOP_ILUDT_FACTOR=51, 424005c665bSBarry Smith MATOP_GET_BLOCK_SIZE=52, 425005c665bSBarry Smith MATOP_GET_ROW_IJ=53, 426005c665bSBarry Smith MATOP_RESTORE_ROW_IJ=54, 427005c665bSBarry Smith MATOP_GET_COLUMN_IJ=55, 428005c665bSBarry Smith MATOP_RESTORE_COLUMN_IJ=56, 429005c665bSBarry Smith MATOP_FDCOLORING_CREATE=57, 430005c665bSBarry Smith MATOP_COLORING_PATCH=58, 431005c665bSBarry Smith MATOP_SET_UNFACTORED=59, 432005c665bSBarry Smith MATOP_PERMUTE=60, 433005c665bSBarry Smith MATOP_SET_VALUES_BLOCKED=61, 4341c1c02c0SLois Curfman McInnes MATOP_DESTROY=250, 4351c1c02c0SLois Curfman McInnes MATOP_VIEW=251 436fae171e0SBarry Smith } MatOperation; 437112a2221SBarry Smith extern int MatHasOperation(Mat,MatOperation,PetscTruth*); 438fae171e0SBarry Smith extern int MatShellSetOperation(Mat,MatOperation,void *); 439d4bb536fSBarry Smith extern int MatShellGetOperation(Mat,MatOperation,void **); 440112a2221SBarry Smith 44190ace30eSBarry Smith /* 44290ace30eSBarry Smith Codes for matrices stored on disk. By default they are 44390ace30eSBarry Smith stored in a universal format. By changing the format with 444639f9d9dSBarry Smith ViewerSetFormat(viewer,VIEWER_FORMAT_BINARY_NATIVE); the matrices will 44590ace30eSBarry Smith be stored in a way natural for the matrix, for example dense matrices 44690ace30eSBarry Smith would be stored as dense. Matrices stored this way may only be 44790ace30eSBarry Smith read into matrices of the same time. 44890ace30eSBarry Smith */ 44990ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1 45090ace30eSBarry Smith 4513f1d51d7SBarry Smith /* 4523f1d51d7SBarry Smith New matrix classes not yet distributed 4533f1d51d7SBarry Smith */ 4543f1d51d7SBarry Smith /* 4553f1d51d7SBarry Smith MatAIJIndices is a data structure for storing the nonzero location information 4563f1d51d7SBarry Smith for sparse matrices. Several matrices with identical nonzero structure can share 4573f1d51d7SBarry Smith the same MatAIJIndices. 4583f1d51d7SBarry Smith */ 459e2a1c21fSSatish Balay typedef struct _p_MatAIJIndices* MatAIJIndices; 4603f1d51d7SBarry Smith 4613f1d51d7SBarry Smith extern int MatCreateAIJIndices(int,int,int*,int*,PetscTruth,MatAIJIndices*); 4623f1d51d7SBarry Smith extern int MatCreateAIJIndicesEmpty(int,int,int*,PetscTruth,MatAIJIndices*); 4633f1d51d7SBarry Smith extern int MatAttachAIJIndices(MatAIJIndices,MatAIJIndices*); 4643f1d51d7SBarry Smith extern int MatDestroyAIJIndices(MatAIJIndices); 4653f1d51d7SBarry Smith extern int MatCopyAIJIndices(MatAIJIndices,MatAIJIndices*); 4663f1d51d7SBarry Smith extern int MatValidateAIJIndices(int,MatAIJIndices); 4673f1d51d7SBarry Smith extern int MatShiftAIJIndices(MatAIJIndices); 4683f1d51d7SBarry Smith extern int MatShrinkAIJIndices(MatAIJIndices); 4693f1d51d7SBarry Smith extern int MatTransposeAIJIndices(MatAIJIndices,MatAIJIndices*); 4703f1d51d7SBarry Smith 4713f1d51d7SBarry Smith extern int MatCreateSeqCSN(MPI_Comm,int,int,int*,int,Mat*); 4723f1d51d7SBarry Smith extern int MatCreateSeqCSN_Single(MPI_Comm,int,int,int*,int,Mat*); 4733f1d51d7SBarry Smith extern int MatCreateSeqCSNWithPrecision(MPI_Comm,int,int,int*,int,ScalarPrecision,Mat*); 4743f1d51d7SBarry Smith 4753f1d51d7SBarry Smith extern int MatCreateSeqCSNIndices(MPI_Comm,MatAIJIndices,int,Mat *); 4763f1d51d7SBarry Smith extern int MatCreateSeqCSNIndices_Single(MPI_Comm,MatAIJIndices,int,Mat *); 4773f1d51d7SBarry Smith extern int MatCreateSeqCSNIndicesWithPrecision(MPI_Comm,MatAIJIndices,int,ScalarPrecision,Mat *); 4783f1d51d7SBarry Smith 479aa6d738dSSatish Balay extern int MatMPIBAIJSetHashTableFactor(Mat,double); 4802e8a6d31SBarry Smith extern int MatSeqAIJGetInodeSizes(Mat,int *,int *[],int *); 481860d1616SSatish Balay 4823f1d51d7SBarry Smith 4832eac72dbSBarry Smith #endif 4842eac72dbSBarry Smith 4852eac72dbSBarry Smith 4869d00d63dSBarry Smith 487