12eac72dbSBarry Smith /* 22eac72dbSBarry Smith Include file for the matrix component of PETSc 32eac72dbSBarry Smith */ 4a4963045SJacob Faibussowitsch #pragma once 5ac09b921SBarry Smith 62c8e378dSBarry Smith #include <petscvec.h> 72eac72dbSBarry Smith 8ac09b921SBarry Smith /* SUBMANSEC = Mat */ 9ac09b921SBarry Smith 10d9274352SBarry Smith /*S 118f6c3df8SBarry Smith Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without 12af27ebaaSBarry Smith an explicit sparse representation (such as matrix-free operators). Also used to hold representations of graphs 13af27ebaaSBarry Smith for graph operations such as coloring, `MatColoringCreate()` 142eac72dbSBarry Smith 15d91e6319SBarry Smith Level: beginner 16d91e6319SBarry Smith 172ef1f0ffSBarry Smith Note: 181cc06b55SBarry Smith See [](doc_matrix), [](ch_matrices) and `MatType` for available matrix types 192ef1f0ffSBarry Smith 201cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()` 21d9274352SBarry Smith S*/ 22d9274352SBarry Smith typedef struct _p_Mat *Mat; 23d9274352SBarry Smith 2476bdecfbSBarry Smith /*J 258f6c3df8SBarry Smith MatType - String with the name of a PETSc matrix type 26d9274352SBarry Smith 27d9274352SBarry Smith Level: beginner 28d9274352SBarry Smith 292ef1f0ffSBarry Smith Note: 302ef1f0ffSBarry Smith [](doc_matrix) for a table of available matrix types 312ef1f0ffSBarry Smith 321cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()` 3376bdecfbSBarry Smith J*/ 3419fd82e9SBarry Smith typedef const char *MatType; 35273d9f13SBarry Smith #define MATSAME "same" 365a11e1b2SBarry Smith #define MATMAIJ "maij" 37273d9f13SBarry Smith #define MATSEQMAIJ "seqmaij" 38273d9f13SBarry Smith #define MATMPIMAIJ "mpimaij" 3949bd79ccSDebojyoti Ghosh #define MATKAIJ "kaij" 4049bd79ccSDebojyoti Ghosh #define MATSEQKAIJ "seqkaij" 4149bd79ccSDebojyoti Ghosh #define MATMPIKAIJ "mpikaij" 42273d9f13SBarry Smith #define MATIS "is" 435a11e1b2SBarry Smith #define MATAIJ "aij" 44273d9f13SBarry Smith #define MATSEQAIJ "seqaij" 45273d9f13SBarry Smith #define MATMPIAIJ "mpiaij" 465a11e1b2SBarry Smith #define MATAIJCRL "aijcrl" 475a11e1b2SBarry Smith #define MATSEQAIJCRL "seqaijcrl" 485a11e1b2SBarry Smith #define MATMPIAIJCRL "mpiaijcrl" 499ae82921SPaul Mullowney #define MATAIJCUSPARSE "aijcusparse" 509ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE "seqaijcusparse" 519ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE "mpiaijcusparse" 5247d993e7Ssuyashtn #define MATAIJHIPSPARSE "aijhipsparse" 5347d993e7Ssuyashtn #define MATSEQAIJHIPSPARSE "seqaijhipsparse" 5447d993e7Ssuyashtn #define MATMPIAIJHIPSPARSE "mpiaijhipsparse" 558c3ff71bSJunchao Zhang #define MATAIJKOKKOS "aijkokkos" 568c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS "seqaijkokkos" 578c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS "mpiaijkokkos" 58d67ff14aSKarl Rupp #define MATAIJVIENNACL "aijviennacl" 59d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL "seqaijviennacl" 60d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL "mpiaijviennacl" 615a11e1b2SBarry Smith #define MATAIJPERM "aijperm" 625a11e1b2SBarry Smith #define MATSEQAIJPERM "seqaijperm" 635a11e1b2SBarry Smith #define MATMPIAIJPERM "mpiaijperm" 644dfdc2d9SRichard Tran Mills #define MATAIJSELL "aijsell" 654dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL "seqaijsell" 664dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL "mpiaijsell" 674a2a386eSRichard Tran Mills #define MATAIJMKL "aijmkl" 684a2a386eSRichard Tran Mills #define MATSEQAIJMKL "seqaijmkl" 694a2a386eSRichard Tran Mills #define MATMPIAIJMKL "mpiaijmkl" 70b5b72c8aSIrina Sokolova #define MATBAIJMKL "baijmkl" 71b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL "seqbaijmkl" 72b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL "mpibaijmkl" 73273d9f13SBarry Smith #define MATSHELL "shell" 74c1fff1c6SRichard Tran Mills #define MATCENTERING "centering" 755a11e1b2SBarry Smith #define MATDENSE "dense" 76637a0070SStefano Zampini #define MATDENSECUDA "densecuda" 7747d993e7Ssuyashtn #define MATDENSEHIP "densehip" 78209238afSKris Buschelman #define MATSEQDENSE "seqdense" 79bfc799aaSStefano Zampini #define MATSEQDENSECUDA "seqdensecuda" 8047d993e7Ssuyashtn #define MATSEQDENSEHIP "seqdensehip" 81273d9f13SBarry Smith #define MATMPIDENSE "mpidense" 82637a0070SStefano Zampini #define MATMPIDENSECUDA "mpidensecuda" 8347d993e7Ssuyashtn #define MATMPIDENSEHIP "mpidensehip" 84db31f6deSJed Brown #define MATELEMENTAL "elemental" 85d24d4204SJose E. Roman #define MATSCALAPACK "scalapack" 865a11e1b2SBarry Smith #define MATBAIJ "baij" 87273d9f13SBarry Smith #define MATSEQBAIJ "seqbaij" 88273d9f13SBarry Smith #define MATMPIBAIJ "mpibaij" 89273d9f13SBarry Smith #define MATMPIADJ "mpiadj" 905a11e1b2SBarry Smith #define MATSBAIJ "sbaij" 91273d9f13SBarry Smith #define MATSEQSBAIJ "seqsbaij" 92273d9f13SBarry Smith #define MATMPISBAIJ "mpisbaij" 93cebc7f6cSBarry Smith #define MATMFFD "mffd" 94c8a8475eSBarry Smith #define MATNORMAL "normal" 95c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN "normalh" 96ab92ecdeSBarry Smith #define MATLRC "lrc" 972a6744ebSBarry Smith #define MATSCATTER "scatter" 98421e10b8SBarry Smith #define MATBLOCKMAT "blockmat" 99793850ffSBarry Smith #define MATCOMPOSITE "composite" 1001f8c7532SHong Zhang #define MATFFT "fft" 1011f8c7532SHong Zhang #define MATFFTW "fftw" 102e133240eSMatthew G Knepley #define MATSEQCUFFT "seqcufft" 10347d993e7Ssuyashtn #define MATSEQHIPFFT "seqhipfft" 104edd03b47SJacob Faibussowitsch #define MATTRANSPOSEMAT PETSC_DEPRECATED_MACRO(3, 18, 0, "MATTRANSPOSEVIRTUAL", ) "transpose" 105013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL "transpose" 106013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose" 10772ca8751SBarry Smith #define MATSCHURCOMPLEMENT "schurcomplement" 1081d6018f0SLisandro Dalcin #define MATPYTHON "python" 10963c07aadSStefano Zampini #define MATHYPRE "hypre" 110f91d8e95SBarry Smith #define MATHYPRESTRUCT "hyprestruct" 111a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT "hypresstruct" 112ee1cef2cSJed Brown #define MATSUBMATRIX "submatrix" 1132c0dbf93SJed Brown #define MATLOCALREF "localref" 114d8588912SDave May #define MATNEST "nest" 115c094ef40SMatthew G. Knepley #define MATPREALLOCATOR "preallocator" 116d4002b98SHong Zhang #define MATSELL "sell" 117d4002b98SHong Zhang #define MATSEQSELL "seqsell" 118d4002b98SHong Zhang #define MATMPISELL "mpisell" 1192d1451d4SHong Zhang #define MATSELLCUDA "sellcuda" 1202d1451d4SHong Zhang #define MATSEQSELLCUDA "seqsellcuda" 1212d1451d4SHong Zhang #define MATMPISELLCUDA "mpisellcuda" 122a3b2e22bSHong Zhang #define MATDUMMY "dummy" 123cd929ea3SAlp Dener #define MATLMVM "lmvm" 12478e4361aSAlp Dener #define MATLMVMDFP "lmvmdfp" 12578e4361aSAlp Dener #define MATLMVMBFGS "lmvmbfgs" 12678e4361aSAlp Dener #define MATLMVMSR1 "lmvmsr1" 127864588a7SAlp Dener #define MATLMVMBROYDEN "lmvmbroyden" 128864588a7SAlp Dener #define MATLMVMBADBROYDEN "lmvmbadbroyden" 129864588a7SAlp Dener #define MATLMVMSYMBROYDEN "lmvmsymbroyden" 130864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN "lmvmsymbadbroyden" 131864588a7SAlp Dener #define MATLMVMDIAGBROYDEN "lmvmdiagbroyden" 1323423f386SBarry Smith #define MATCONSTANTDIAGONAL "constantdiagonal" 133345a4b08SToby Isaac #define MATDIAGONAL "diagonal" 134c7a4214aSPierre Jolivet #define MATHTOOL "htool" 13553022affSStefano Zampini #define MATH2OPUS "h2opus" 136773941d6SBarry Smith 13776bdecfbSBarry Smith /*J 138af27ebaaSBarry Smith MatSolverType - String with the name of a PETSc factorization-based matrix solver type. 1399989ab13SBarry Smith 140c2b89b5dSBarry Smith For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc 1419989ab13SBarry Smith 1429989ab13SBarry Smith Level: beginner 1439989ab13SBarry Smith 1442ef1f0ffSBarry Smith Note: 14516a05f60SBarry Smith `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as 14616a05f60SBarry Smith a ./configure option to install them 147c7ccbb75SBarry Smith 1481cc06b55SBarry Smith .seealso: [](sec_matfactor), [](ch_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()` 14976bdecfbSBarry Smith J*/ 150ea799195SBarry Smith typedef const char *MatSolverType; 1512692d6eeSBarry Smith #define MATSOLVERSUPERLU "superlu" 1522692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST "superlu_dist" 15308f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK "strumpack" 1542692d6eeSBarry Smith #define MATSOLVERUMFPACK "umfpack" 15520db9a53SJed Brown #define MATSOLVERCHOLMOD "cholmod" 156d89f5e7aSBarry Smith #define MATSOLVERKLU "klu" 157d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL "elemental" 158d24d4204SJose E. Roman #define MATSOLVERSCALAPACK "scalapack" 1592692d6eeSBarry Smith #define MATSOLVERESSL "essl" 1602692d6eeSBarry Smith #define MATSOLVERLUSOL "lusol" 1612692d6eeSBarry Smith #define MATSOLVERMUMPS "mumps" 162d615f992SSatish Balay #define MATSOLVERMKL_PARDISO "mkl_pardiso" 163d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO "mkl_cpardiso" 1642692d6eeSBarry Smith #define MATSOLVERPASTIX "pastix" 1652692d6eeSBarry Smith #define MATSOLVERMATLAB "matlab" 1662692d6eeSBarry Smith #define MATSOLVERPETSC "petsc" 1672692d6eeSBarry Smith #define MATSOLVERBAS "bas" 1689ae82921SPaul Mullowney #define MATSOLVERCUSPARSE "cusparse" 169bfc799aaSStefano Zampini #define MATSOLVERCUDA "cuda" 17047d993e7Ssuyashtn #define MATSOLVERHIPSPARSE "hipsparse" 17147d993e7Ssuyashtn #define MATSOLVERHIP "hip" 172930e68a5SMark Adams #define MATSOLVERKOKKOS "kokkos" 173a2fc1e05SToby Isaac #define MATSOLVERSPQR "spqr" 174c0cdd4a1SDahai Guo 175b24902e0SBarry Smith /*E 176b24902e0SBarry Smith MatFactorType - indicates what type of factorization is requested 177b24902e0SBarry Smith 1782ef1f0ffSBarry Smith Values: 1792ef1f0ffSBarry Smith + `MAT_FACTOR_LU` - LU factorization 1802ef1f0ffSBarry Smith . `MAT_FACTOR_CHOLESKY` - Cholesky factorization 1812ef1f0ffSBarry Smith . `MAT_FACTOR_ILU` - ILU factorization 1822ef1f0ffSBarry Smith . `MAT_FACTOR_ICC` - incomplete Cholesky factorization 1832ef1f0ffSBarry Smith . `MAT_FACTOR_ILUDT` - ILU factorization with drop tolerance 1842ef1f0ffSBarry Smith - `MAT_FACTOR_QR` - QR factorization 185b24902e0SBarry Smith 18616a05f60SBarry Smith Level: beginner 18716a05f60SBarry Smith 1881cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()` 189b24902e0SBarry Smith E*/ 1909371c9d4SSatish Balay typedef enum { 1919371c9d4SSatish Balay MAT_FACTOR_NONE, 1929371c9d4SSatish Balay MAT_FACTOR_LU, 1939371c9d4SSatish Balay MAT_FACTOR_CHOLESKY, 1949371c9d4SSatish Balay MAT_FACTOR_ILU, 1959371c9d4SSatish Balay MAT_FACTOR_ICC, 1969371c9d4SSatish Balay MAT_FACTOR_ILUDT, 1979371c9d4SSatish Balay MAT_FACTOR_QR, 1989371c9d4SSatish Balay MAT_FACTOR_NUM_TYPES 1999371c9d4SSatish Balay } MatFactorType; 200014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[]; 201e92e720dSBarry Smith 202ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *); 203ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *); 204f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *); 205edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 15, 0, "MatFactorGetCanUseOrdering()", ) static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b) 206d71ae5a4SJacob Faibussowitsch { 2079371c9d4SSatish Balay return MatFactorGetCanUseOrdering(A, b); 2089371c9d4SSatish Balay } 209ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *); 210014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *); 2117abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType); 2122430ea28SJose E. Roman PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatSolverFunction)(Mat, MatFactorType, Mat *); 2132430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFunction); 2142430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFunction *); 215edd03b47SJacob Faibussowitsch typedef MatSolverType MatSolverPackage PETSC_DEPRECATED_TYPEDEF(3, 9, 0, "MatSolverType", ); 216edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeRegister()", ) static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFunction f) 217d71ae5a4SJacob Faibussowitsch { 2189371c9d4SSatish Balay return MatSolverTypeRegister(stype, mtype, ftype, f); 2199371c9d4SSatish Balay } 220edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeGet()", ) static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFunction *f) 221d71ae5a4SJacob Faibussowitsch { 2229371c9d4SSatish Balay return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f); 2239371c9d4SSatish Balay } 2249989ab13SBarry Smith 2254222ddf1SHong Zhang /*E 22695bd0b28SBarry Smith MatProductType - indicates what type of matrix product to compute 2274222ddf1SHong Zhang 2282ef1f0ffSBarry Smith Values: 2292ef1f0ffSBarry Smith + `MATPRODUCT_AB` - product of two matrices 2302ef1f0ffSBarry Smith . `MATPRODUCT_AtB` - product of the transpose of a given matrix with a matrix 2312ef1f0ffSBarry Smith . `MATPRODUCT_ABt` - product of a matrix with the transpose of another given matrix 2322ef1f0ffSBarry Smith . `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself 2332ef1f0ffSBarry Smith . `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix 2342ef1f0ffSBarry Smith - `MATPRODUCT_ABC` - the product of three matrices 2352ef1f0ffSBarry Smith 23616a05f60SBarry Smith Level: beginner 23716a05f60SBarry Smith 2381cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatProductSetType()` 2394222ddf1SHong Zhang E*/ 2409371c9d4SSatish Balay typedef enum { 2419371c9d4SSatish Balay MATPRODUCT_UNSPECIFIED = 0, 2429371c9d4SSatish Balay MATPRODUCT_AB, 2439371c9d4SSatish Balay MATPRODUCT_AtB, 2449371c9d4SSatish Balay MATPRODUCT_ABt, 2459371c9d4SSatish Balay MATPRODUCT_PtAP, 2469371c9d4SSatish Balay MATPRODUCT_RARt, 2479371c9d4SSatish Balay MATPRODUCT_ABC 2489371c9d4SSatish Balay } MatProductType; 249544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[]; 2504222ddf1SHong Zhang 2514222ddf1SHong Zhang /*J 2524222ddf1SHong Zhang MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation 2534222ddf1SHong Zhang 2544222ddf1SHong Zhang Level: beginner 2554222ddf1SHong Zhang 2561cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType` 2574222ddf1SHong Zhang J*/ 2584222ddf1SHong Zhang typedef const char *MatProductAlgorithm; 2593e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT "default" 2603e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED "sorted" 2613e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE "scalable" 2623e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST "scalable_fast" 2633e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP "heap" 2643e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP "btheap" 2653e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED "llcondensed" 2663e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE "rowmerge" 2673e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT "outerproduct" 2683e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB "at*b" 2693e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP "rap" 2703e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE "nonscalable" 2713e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI "seqmpi" 2723e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND "backend" 2733e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING "overlapping" 2743e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED "merged" 2753e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE "allatonce" 2763e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged" 2773e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV "allgatherv" 2783e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC "cyclic" 2793e662e0bSHong Zhang #if defined(PETSC_HAVE_HYPRE) 2803e662e0bSHong Zhang #define MATPRODUCTALGORITHMHYPRE "hypre" 2813e662e0bSHong Zhang #endif 2824222ddf1SHong Zhang 2834222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *); 2844222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat); 2854222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType); 2864222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm); 287*8fcac130SJose E. Roman PETSC_EXTERN PetscErrorCode MatProductGetAlgorithm(Mat, MatProductAlgorithm *); 2884222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal); 2894222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat); 2904222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat); 2914222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat); 2924222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat); 2934417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat); 2946718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer); 295c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *); 296c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *); 2974222ddf1SHong Zhang 298c06d978dSMatthew Knepley /* Logging support */ 2990700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */ 300014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID; 301335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID; 302014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID; 303014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID; 304014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID; 305014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID; 306014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID; 307014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID; 308c06d978dSMatthew Knepley 309ceb03754SKris Buschelman /*E 3102ef1f0ffSBarry Smith MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions 311cf37664fSBarry Smith are to be reused to store the new matrix values. 312cf37664fSBarry Smith 3132ef1f0ffSBarry Smith Values: 3142ef1f0ffSBarry Smith + `MAT_INITIAL_MATRIX` - create a new matrix 3152ef1f0ffSBarry Smith . `MAT_REUSE_MATRIX` - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX` 3162ef1f0ffSBarry Smith . `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions) 3172ef1f0ffSBarry Smith - `MAT_IGNORE_MATRIX` - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions) 318ceb03754SKris Buschelman 319ceb03754SKris Buschelman Level: beginner 320ceb03754SKris Buschelman 3211cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()` 322ceb03754SKris Buschelman E*/ 3239371c9d4SSatish Balay typedef enum { 3249371c9d4SSatish Balay MAT_INITIAL_MATRIX, 3259371c9d4SSatish Balay MAT_REUSE_MATRIX, 3269371c9d4SSatish Balay MAT_IGNORE_MATRIX, 3279371c9d4SSatish Balay MAT_INPLACE_MATRIX 3289371c9d4SSatish Balay } MatReuse; 329ceb03754SKris Buschelman 3305494a064SHong Zhang /*E 3312ef1f0ffSBarry Smith MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()` 3322ef1f0ffSBarry Smith include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`. 3335494a064SHong Zhang 3342ef1f0ffSBarry Smith Values: 3352ef1f0ffSBarry Smith + `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values 3362ef1f0ffSBarry Smith - `MAT_GET_VALUES` - copy the matrix values 3372ef1f0ffSBarry Smith 33895bd0b28SBarry Smith Level: developer 33995bd0b28SBarry Smith 3402ef1f0ffSBarry Smith Developer Note: 3412ef1f0ffSBarry Smith Why is not just a boolean used for this information? 3422ef1f0ffSBarry Smith 3431cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()` 3445494a064SHong Zhang E*/ 3459371c9d4SSatish Balay typedef enum { 3469371c9d4SSatish Balay MAT_DO_NOT_GET_VALUES, 3479371c9d4SSatish Balay MAT_GET_VALUES 3489371c9d4SSatish Balay } MatCreateSubMatrixOption; 3495494a064SHong Zhang 350607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void); 3514bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatFinalizePackage(void); 352c06d978dSMatthew Knepley 353014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *); 35477433607SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFromOptions(MPI_Comm, const char *, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 355014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt); 35619fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType); 3570d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *); 3580d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType); 359014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat); 360fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]); 361bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat)); 36223bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]); 363014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]); 36426cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]); 36526cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]); 366014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]); 367014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]); 36884d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool); 369f69a0ea3SMatthew Knepley 370140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList; 371140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList; 372140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList; 37328988994SBarry Smith 3743b224e63SBarry Smith /*E 375aa6c7ce3SBarry Smith MatStructure - Indicates if two matrices have the same nonzero structure 3763b224e63SBarry Smith 3772ef1f0ffSBarry Smith Values: 3782ef1f0ffSBarry Smith + `SAME_NONZERO_PATTERN` - the two matrices have identical nonzero patterns 3792ef1f0ffSBarry Smith . `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns 3802ef1f0ffSBarry Smith . `SUBSET_NONZERO_PATTERN` - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix 3812ef1f0ffSBarry Smith - `UNKNOWN_NONZERO_PATTERN` - there is no known relationship between the nonzero patterns. In this case the implementations 3822ef1f0ffSBarry Smith may try to detect a relationship to optimize the operation 383531d0c6aSBarry Smith 38416a05f60SBarry Smith Level: beginner 38516a05f60SBarry Smith 386af27ebaaSBarry Smith Note: 387af27ebaaSBarry Smith Certain matrix operations (such as `MatAXPY()`) can run much faster if the sparsity pattern of the matrices are the same. But actually determining if 388af27ebaaSBarry Smith the patterns are the same may be costly. This provides a way for users who know something about the sparsity patterns to provide this information 389af27ebaaSBarry Smith to certain PETSc routines. 390af27ebaaSBarry Smith 3911cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()` 3923b224e63SBarry Smith E*/ 3939371c9d4SSatish Balay typedef enum { 3949371c9d4SSatish Balay DIFFERENT_NONZERO_PATTERN, 3959371c9d4SSatish Balay SUBSET_NONZERO_PATTERN, 3969371c9d4SSatish Balay SAME_NONZERO_PATTERN, 3979371c9d4SSatish Balay UNKNOWN_NONZERO_PATTERN 3989371c9d4SSatish Balay } MatStructure; 399d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[]; 4003b224e63SBarry Smith 4019779e05dSSatish Balay #if defined PETSC_HAVE_MKL_SPARSE 402ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 403ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 40480095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 405ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 40680095d54SIrina Sokolova #endif 407cd929ea3SAlp Dener 4084bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 4094bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 4104bf303faSJacob Faibussowitsch 411d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 412d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 413d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]); 414d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 41507e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *); 41607e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *); 41707e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *); 41807e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt); 419b921024eSHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *); 42080095d54SIrina Sokolova 4214bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 4224bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 423fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *); 424fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetSeqSELL(Mat, Mat *, Mat *, const PetscInt *[]); 4254bf303faSJacob Faibussowitsch 426014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 427014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 428014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 429014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 430014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 4318f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 4326a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]); 433014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *); 4343b00a383SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *); 4353b00a383SHong Zhang 436014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 437014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 438014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 4397e8381f9SStefano Zampini 440e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]); 44182a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]); 4427e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode); 443d21a29f3SJed Brown 444014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *); 445014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 446d21a29f3SJed Brown 447014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 448014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 44938f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 450014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 4514cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]); 452dfb205c3SBarry Smith 453014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *); 454c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *); 455014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *); 456c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *); 457986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *); 458267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *); 459bcf2175cSMatthew Knepley PETSC_EXTERN PetscErrorCode MatLRCSetMats(Mat, Mat, Mat, Vec, Mat); 460c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *); 461014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 462014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 463c0cdd4a1SDahai Guo 464014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *); 465014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter); 466014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *); 467014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *); 468014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat); 469014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat); 4709371c9d4SSatish Balay typedef enum { 4719371c9d4SSatish Balay MAT_COMPOSITE_MERGE_RIGHT, 4729371c9d4SSatish Balay MAT_COMPOSITE_MERGE_LEFT 4739371c9d4SSatish Balay } MatCompositeMergeType; 4748c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType); 475014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *); 4769371c9d4SSatish Balay typedef enum { 4779371c9d4SSatish Balay MAT_COMPOSITE_ADDITIVE, 4789371c9d4SSatish Balay MAT_COMPOSITE_MULTIPLICATIVE 4799371c9d4SSatish Balay } MatCompositeType; 480014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType); 4816dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *); 4823b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure); 4833b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *); 4846d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *); 4858b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *); 48603049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *); 4876d7c1e57SBarry Smith 48819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *); 489014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *); 490dedccee8SHong Zhang 491014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *); 4928060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *); 493d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *); 49406511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *); 495fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *); 49665f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *); 49754e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *); 49854e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS); 499014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *); 5003423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *); 501345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatCreateDiagonal(Vec, Mat *); 502345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetDiagonal(Mat, Vec *); 503345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreDiagonal(Mat, Vec *); 504345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetInverseDiagonal(Mat, Vec *); 505345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreInverseDiagonal(Mat, Vec *); 5061472f72bSBarry Smith 507978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE) 508d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 509978814f1SStefano Zampini #endif 510978814f1SStefano Zampini 511014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]); 512ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]); 5131d6018f0SLisandro Dalcin 514846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat); 515014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat); 516014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *); 517e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *); 51821c89e3eSBarry Smith 519014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat); 520014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat); 521014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat); 522014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *); 523014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *); 524713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **); 5250da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *); 526479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat); 5278a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *); 52820c04d79SPierre Jolivet PETSC_EXTERN PetscErrorCode MatComputeVariableBlockEnvelope(Mat); 52999cafbc1SBarry Smith 530014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 5318a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode); 532014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 533014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]); 534014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]); 535014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]); 53673a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom); 53784cb2905SBarry Smith 5382ef4de8bSBarry Smith /*S 5392ef1f0ffSBarry Smith MatStencil - Data structure (C struct) for storing information about rows and 5402ef1f0ffSBarry Smith columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()` 54162ef0227SBarry Smith 5422ef1f0ffSBarry Smith Level: beginner 5432ef1f0ffSBarry Smith 5442ef1f0ffSBarry Smith Notes: 54562ef0227SBarry Smith The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored). 54687497f52SBarry Smith The c represents the the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored. 54762ef0227SBarry Smith 54887497f52SBarry Smith For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`. 549be479b30SJed Brown 5502ef1f0ffSBarry Smith For staggered grids, see `DMStagStencil` 5512ef4de8bSBarry Smith 5522ef1f0ffSBarry Smith Fortran Note: 5532ef1f0ffSBarry Smith See `MatSetValuesStencil()` for details. 5542ef4de8bSBarry Smith 5551cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`, 5562ef1f0ffSBarry Smith `DMStagStencil` 5572ef4de8bSBarry Smith S*/ 558435da068SBarry Smith typedef struct { 559c1ac3661SBarry Smith PetscInt k, j, i, c; 560435da068SBarry Smith } MatStencil; 5612ef4de8bSBarry Smith 562014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 563014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 564014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt); 565435da068SBarry Smith 566d91e6319SBarry Smith /*E 5672ef1f0ffSBarry Smith MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use 568d91e6319SBarry Smith 5692ef1f0ffSBarry Smith Values: 5702ef1f0ffSBarry Smith + `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix 5712ef1f0ffSBarry Smith - `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted 5722ef1f0ffSBarry Smith 57316a05f60SBarry Smith Level: beginner 57416a05f60SBarry Smith 5751cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()` 576d91e6319SBarry Smith E*/ 5779371c9d4SSatish Balay typedef enum { 5789371c9d4SSatish Balay MAT_FLUSH_ASSEMBLY = 1, 5799371c9d4SSatish Balay MAT_FINAL_ASSEMBLY = 0 5809371c9d4SSatish Balay } MatAssemblyType; 581014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType); 582014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType); 583014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *); 5844f9c727eSBarry Smith 585d91e6319SBarry Smith /*E 5862ef1f0ffSBarry Smith MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage 587d91e6319SBarry Smith 588d91e6319SBarry Smith Level: beginner 589d91e6319SBarry Smith 5902ef1f0ffSBarry Smith Note: 5912ef1f0ffSBarry Smith See `MatSetOption()` for the use of the options 5922ef1f0ffSBarry Smith 5932ef1f0ffSBarry Smith Developer Note: 59495452b02SPatrick Sanan Entries that are negative need not be called collectively by all processes. 595382164b0SBarry Smith 5961cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetOption()` 597d91e6319SBarry Smith E*/ 5989371c9d4SSatish Balay typedef enum { 5999371c9d4SSatish Balay MAT_OPTION_MIN = -3, 600c5e4d11fSDmitry Karpeev MAT_UNUSED_NONZERO_LOCATION_ERR = -2, 60192d4d306SBarry Smith MAT_ROW_ORIENTED = -1, 602382164b0SBarry Smith MAT_SYMMETRIC = 1, 603382164b0SBarry Smith MAT_STRUCTURALLY_SYMMETRIC = 2, 6048c78258cSHong Zhang MAT_FORCE_DIAGONAL_ENTRIES = 3, 605382164b0SBarry Smith MAT_IGNORE_OFF_PROC_ENTRIES = 4, 606382164b0SBarry Smith MAT_USE_HASH_TABLE = 5, 607382164b0SBarry Smith MAT_KEEP_NONZERO_PATTERN = 6, 608382164b0SBarry Smith MAT_IGNORE_ZERO_ENTRIES = 7, 609382164b0SBarry Smith MAT_USE_INODES = 8, 610382164b0SBarry Smith MAT_HERMITIAN = 9, 611382164b0SBarry Smith MAT_SYMMETRY_ETERNAL = 10, 612c5e4d11fSDmitry Karpeev MAT_NEW_NONZERO_LOCATION_ERR = 11, 613382164b0SBarry Smith MAT_IGNORE_LOWER_TRIANGULAR = 12, 614382164b0SBarry Smith MAT_ERROR_LOWER_TRIANGULAR = 13, 615382164b0SBarry Smith MAT_GETROW_UPPERTRIANGULAR = 14, 616382164b0SBarry Smith MAT_SPD = 15, 61792d4d306SBarry Smith MAT_NO_OFF_PROC_ZERO_ROWS = 16, 61892d4d306SBarry Smith MAT_NO_OFF_PROC_ENTRIES = 17, 61992d4d306SBarry Smith MAT_NEW_NONZERO_LOCATIONS = 18, 620c5e4d11fSDmitry Karpeev MAT_NEW_NONZERO_ALLOCATION_ERR = 19, 621c5e4d11fSDmitry Karpeev MAT_SUBSET_OFF_PROC_ENTRIES = 20, 622c10200c1SHong Zhang MAT_SUBMAT_SINGLEIS = 21, 623957cac9fSHong Zhang MAT_STRUCTURE_ONLY = 22, 624071fcb05SBarry Smith MAT_SORTED_FULL = 23, 6251a2c6b5cSJunchao Zhang MAT_FORM_EXPLICIT_TRANSPOSE = 24, 626b94d7dedSBarry Smith MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25, 627b94d7dedSBarry Smith MAT_SPD_ETERNAL = 26, 6289371c9d4SSatish Balay MAT_OPTION_MAX = 27 6299371c9d4SSatish Balay } MatOption; 630e057df02SPaul Mullowney 6310f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions; 632014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOption(Mat, MatOption, PetscBool); 6337d68702bSBarry Smith PETSC_EXTERN PetscErrorCode MatGetOption(Mat, MatOption, PetscBool *); 634856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode MatPropagateSymmetryOptions(Mat, Mat); 63519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetType(Mat, MatType *); 63684cb2905SBarry Smith 637014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 638014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 639014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 640014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowUpperTriangular(Mat); 641014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowUpperTriangular(Mat); 642014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnVector(Mat, Vec, PetscInt); 6438c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetArray(Mat, PetscScalar *[]); 6448f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]); 645d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]); 6468c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArray(Mat, PetscScalar *[]); 6478f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]); 648d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]); 64921e72a00SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *); 650bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 6514099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetType(Mat, MatType); 652ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatSeqAIJKron(Mat, Mat, MatReuse, Mat *); 653388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *)); 6544099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList; 655cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJGetArray(Mat, PetscScalar *[]); 656cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJRestoreArray(Mat, PetscScalar *[]); 6578397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJGetArray(Mat, PetscScalar *[]); 6588397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]); 6598c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArray(Mat, PetscScalar *[]); 6608c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArray(Mat, PetscScalar *[]); 661d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDensePlaceArray(Mat, const PetscScalar[]); 662d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseReplaceArray(Mat, const PetscScalar[]); 663d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseResetArray(Mat); 6648572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArrayRead(Mat, const PetscScalar *[]); 6658572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayRead(Mat, const PetscScalar *[]); 6666947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetArrayWrite(Mat, PetscScalar *[]); 6676947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWrite(Mat, PetscScalar *[]); 668cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *); 669cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]); 670cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *); 671cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]); 672cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *); 673cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]); 674014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSize(Mat, PetscInt *); 675014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSize(Mat, PetscInt); 676014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSizes(Mat, PetscInt *, PetscInt *); 677014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizes(Mat, PetscInt, PetscInt); 67833d57670SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizesFromMats(Mat, Mat, Mat); 6790da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetVariableBlockSizes(Mat, PetscInt, PetscInt *); 6800da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt **); 6810da83c2eSBarry Smith 68286aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]); 68386aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]); 6846947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *); 6856947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *); 6866947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *); 6876947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *); 6886947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *); 6896947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *); 690a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 6915ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *); 6921620fd73SBarry Smith 693014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec); 694014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec); 695014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec); 696014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec); 697014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec); 698014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *); 699014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *); 700014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec); 701014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec); 702014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat); 703bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat); 704eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat); 705f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec); 706f5edf698SHong Zhang 707d91e6319SBarry Smith /*E 708d91e6319SBarry Smith MatDuplicateOption - Indicates if a duplicated sparse matrix should have 709d91e6319SBarry Smith its numerical values copied over or just its nonzero structure. 710d91e6319SBarry Smith 7112ef1f0ffSBarry Smith Values: 7122ef1f0ffSBarry Smith + `MAT_DO_NOT_COPY_VALUES` - Create a matrix using the same nonzero pattern as the original matrix, 7132ef1f0ffSBarry Smith with zeros for the numerical values 7142ef1f0ffSBarry Smith . `MAT_COPY_VALUES` - Create a matrix with the same nonzero pattern as the original matrix 7152ef1f0ffSBarry Smith and with the same numerical values. 7162ef1f0ffSBarry Smith - `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix 7172ef1f0ffSBarry Smith and does not copy it, using zeros for the numerical values. The parent and 7182ef1f0ffSBarry Smith child matrices will share their index (i and j) arrays, and you cannot 7192ef1f0ffSBarry Smith insert new nonzero entries into either matrix 7200018da39SRichard Tran Mills 72116a05f60SBarry Smith Level: beginner 72216a05f60SBarry Smith 72387497f52SBarry Smith Note: 72487497f52SBarry Smith Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in 72587497f52SBarry Smith this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified. 72670dcbbb9SBarry Smith 7271cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicate()` 728d91e6319SBarry Smith E*/ 7299371c9d4SSatish Balay typedef enum { 7309371c9d4SSatish Balay MAT_DO_NOT_COPY_VALUES, 7319371c9d4SSatish Balay MAT_COPY_VALUES, 7329371c9d4SSatish Balay MAT_SHARE_NONZERO_PATTERN 7339371c9d4SSatish Balay } MatDuplicateOption; 7342e8a6d31SBarry Smith 73519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *); 736014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *); 73794a9d846SBarry Smith 738014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure); 739014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer); 740014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *); 741014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *); 742014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *); 743014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *); 744014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *); 745b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *); 746b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *); 747014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *); 748014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer); 7497b80b807SBarry Smith 7501a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7511a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7521a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7531a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 754d4fbbf0eSBarry Smith 755d91e6319SBarry Smith /*S 75687497f52SBarry Smith MatInfo - Context of matrix information, used with `MatGetInfo()` 757d91e6319SBarry Smith 758d91e6319SBarry Smith Level: intermediate 759d91e6319SBarry Smith 7602ef1f0ffSBarry Smith Fortran Note: 7612ef1f0ffSBarry Smith Information is stored as a double-precision array of dimension `MAT_INFO_SIZE` 7622ef1f0ffSBarry Smith 7631cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetInfo()`, `MatInfoType` 764d91e6319SBarry Smith S*/ 7654e220ebcSLois Curfman McInnes typedef struct { 766b0a32e0cSBarry Smith PetscLogDouble block_size; /* block size */ 767b0a32e0cSBarry Smith PetscLogDouble nz_allocated, nz_used, nz_unneeded; /* number of nonzeros */ 768b0a32e0cSBarry Smith PetscLogDouble memory; /* memory allocated */ 769b0a32e0cSBarry Smith PetscLogDouble assemblies; /* number of matrix assemblies called */ 770b0a32e0cSBarry Smith PetscLogDouble mallocs; /* number of mallocs during MatSetValues() */ 771b0a32e0cSBarry Smith PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */ 772b0a32e0cSBarry Smith PetscLogDouble factor_mallocs; /* number of mallocs during factorization */ 7734e220ebcSLois Curfman McInnes } MatInfo; 7744e220ebcSLois Curfman McInnes 775d9274352SBarry Smith /*E 776d9274352SBarry Smith MatInfoType - Indicates if you want information about the local part of the matrix, 777d9274352SBarry Smith the entire parallel matrix or the maximum over all the local parts. 778d9274352SBarry Smith 7792ef1f0ffSBarry Smith Values: 7802ef1f0ffSBarry Smith + `MAT_LOCAL` - values for each MPI process part of the matrix 7812ef1f0ffSBarry Smith . `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes 7822ef1f0ffSBarry Smith - `MAT_GLOBAL_SUM` - sum of each value over all MPI processes 783d9274352SBarry Smith 78416a05f60SBarry Smith Level: beginner 78516a05f60SBarry Smith 7861cc06b55SBarry Smith .seealso: [](ch_matrices), `MatGetInfo()`, `MatInfo` 787d9274352SBarry Smith E*/ 7889371c9d4SSatish Balay typedef enum { 7899371c9d4SSatish Balay MAT_LOCAL = 1, 7909371c9d4SSatish Balay MAT_GLOBAL_MAX = 2, 7919371c9d4SSatish Balay MAT_GLOBAL_SUM = 3 7929371c9d4SSatish Balay } MatInfoType; 793014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *); 794014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec); 795014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]); 796014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]); 797014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]); 798014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]); 799014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec); 800014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *); 8017fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *); 8027fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat); 803014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *); 804014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *); 805014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec); 806014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode); 807a52676ecSHong Zhang 808014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *); 809014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *); 810014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *); 811014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 812014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 813e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 814e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 815a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 816a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 817cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 8184222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 819447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 82086919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *); 8217b80b807SBarry Smith 822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *); 823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *); 824857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *); 825857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *); 826857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *); 827857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *); 828857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *); 829857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *); 830857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *); 831014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat); 8321b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat); 833014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 834014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec); 835014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 836014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 837014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 838014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec); 8397b80b807SBarry Smith 840014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *); 841014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *); 842014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *); 843014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **); 844014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *); 845014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **); 846566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *); 8475ef9f2a5SBarry Smith 8487dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 849edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrices()", ) static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 850d71ae5a4SJacob Faibussowitsch { 8519371c9d4SSatish Balay return MatCreateSubMatrices(mat, n, irow, icol, scall, submat); 8529371c9d4SSatish Balay } 8537dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 854edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatricesMPI()", ) static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 855d71ae5a4SJacob Faibussowitsch { 8569371c9d4SSatish Balay return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat); 8579371c9d4SSatish Balay } 858014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]); 859df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]); 8607dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *); 861edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrix()", ) static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat) 862d71ae5a4SJacob Faibussowitsch { 8639371c9d4SSatish Balay return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat); 8649371c9d4SSatish Balay } 865014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *); 866014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *); 867014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *); 868014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *); 8697b80b807SBarry Smith 870014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *); 871014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *); 872014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat); 873014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *); 8748a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *); 875014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *); 876ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *); 877f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *); 878014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *); 879014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]); 8808efafbd8SBarry Smith 881014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt); 882aa1e27eaSFande Kong PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov); 883d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool); 8847b80b807SBarry Smith 885014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 88622440eb1SKris Buschelman 8877bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 8882df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 8897bab7c10SHong Zhang 890014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *); 891014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *); 89222440eb1SKris Buschelman 893014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 894014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *); 895bc011b1eSHong Zhang 896014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure); 897014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure); 8981c741599SHong Zhang 899014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar); 900014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar); 9017b80b807SBarry Smith 902014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping); 903014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 904a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *); 90581fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout); 906014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 907014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 908014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 909014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 910e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 911014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 912014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 913052efed2SBarry Smith 914014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt); 915014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *); 91690f02eecSBarry Smith 917014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec); 918014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec); 919014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec); 92030b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *); 92130b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *); 92230b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *); 9232a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *); 924edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 6, 0, "MatCreateVecs()", ) static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y) 925d71ae5a4SJacob Faibussowitsch { 9269371c9d4SSatish Balay return MatCreateVecs(mat, x, y); 9279371c9d4SSatish Balay } 92853cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *); 929014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *); 930014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *); 9313a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *); 9329c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *); 933bd481603SBarry Smith 934c8d6c325SJunchao Zhang /*@C 9351620fd73SBarry Smith MatSetValue - Set a single entry into a matrix. 9361620fd73SBarry Smith 937e1c5b2e2SJose E. Roman Not Collective 938a9834a7dSSatish Balay 9391620fd73SBarry Smith Input Parameters: 940c8d6c325SJunchao Zhang + mat - the matrix 94116a05f60SBarry Smith . i - the row location of the entry 94216a05f60SBarry Smith . j - the column location of the entry 94316a05f60SBarry Smith . va - the value to insert 94487497f52SBarry Smith - mode - either `INSERT_VALUES` or `ADD_VALUES` 9451620fd73SBarry Smith 9461620fd73SBarry Smith Level: beginner 9471620fd73SBarry Smith 94895bd0b28SBarry Smith Notes: 94995bd0b28SBarry Smith This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()` 95095bd0b28SBarry Smith MUST be called after all calls to `MatSetValue()` have been completed. 95195bd0b28SBarry Smith 9522ef1f0ffSBarry Smith For efficiency one should use `MatSetValues()` and set several values simultaneously. 9532ef1f0ffSBarry Smith 954b43fc34aSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `InsertMode`, `MatGetValue()`, `MatSetValues()`, 9552ef1f0ffSBarry Smith `MatSetValueLocal()`, `MatSetValuesLocal()` 956c8d6c325SJunchao Zhang @*/ 957c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValue(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 958d71ae5a4SJacob Faibussowitsch { 959c8d6c325SJunchao Zhang return MatSetValues(mat, 1, &i, 1, &j, &va, mode); 9609371c9d4SSatish Balay } 9611620fd73SBarry Smith 962e5e5a7b5SPatrick Sanan /*@C 963e5e5a7b5SPatrick Sanan MatGetValue - Gets a single value from a matrix 9641620fd73SBarry Smith 965e5e5a7b5SPatrick Sanan Not Collective; can only return a value owned by the given process 966e5e5a7b5SPatrick Sanan 967e5e5a7b5SPatrick Sanan Input Parameters: 968e5e5a7b5SPatrick Sanan + mat - the matrix 969e5e5a7b5SPatrick Sanan . row - the row location of the entry 970e5e5a7b5SPatrick Sanan - col - the column location of the entry 971e5e5a7b5SPatrick Sanan 972e5e5a7b5SPatrick Sanan Output Parameter: 973e5e5a7b5SPatrick Sanan . va - the value 974e5e5a7b5SPatrick Sanan 9752ef1f0ffSBarry Smith Level: advanced 9762ef1f0ffSBarry Smith 977e5e5a7b5SPatrick Sanan Notes: 978b43fc34aSPierre Jolivet The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd()` before this call 9792ef1f0ffSBarry Smith 98087497f52SBarry Smith For efficiency one should use `MatGetValues()` and get several values simultaneously. 981e5e5a7b5SPatrick Sanan 98287497f52SBarry Smith See notes for `MatGetValues()`. 983e5e5a7b5SPatrick Sanan 984b43fc34aSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()` 985e5e5a7b5SPatrick Sanan @*/ 986d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va) 987d71ae5a4SJacob Faibussowitsch { 9889371c9d4SSatish Balay return MatGetValues(mat, 1, &row, 1, &col, va); 9899371c9d4SSatish Balay } 990e5e5a7b5SPatrick Sanan 991c8d6c325SJunchao Zhang /*@C 9922ef1f0ffSBarry Smith MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes. 993e5e5a7b5SPatrick Sanan 994e5e5a7b5SPatrick Sanan Not Collective 995e5e5a7b5SPatrick Sanan 996e5e5a7b5SPatrick Sanan Input Parameters: 997c8d6c325SJunchao Zhang + mat - the matrix 99816a05f60SBarry Smith . i - the row location of the entry 99916a05f60SBarry Smith . j - the column location of the entry 100016a05f60SBarry Smith . va - the value to insert 100187497f52SBarry Smith - mode - either `INSERT_VALUES` or `ADD_VALUES` 1002e5e5a7b5SPatrick Sanan 10032ef1f0ffSBarry Smith Level: intermediate 10042ef1f0ffSBarry Smith 1005e5e5a7b5SPatrick Sanan Notes: 100687497f52SBarry Smith For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously. 1007e5e5a7b5SPatrick Sanan 100887497f52SBarry Smith See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used. 1009e5e5a7b5SPatrick Sanan 10101cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSetValue()`, `MatSetValuesLocal()` 1011c8d6c325SJunchao Zhang @*/ 1012c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValueLocal(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 1013d71ae5a4SJacob Faibussowitsch { 1014c8d6c325SJunchao Zhang return MatSetValuesLocal(mat, 1, &i, 1, &j, &va, mode); 10159371c9d4SSatish Balay } 10161620fd73SBarry Smith 10171620fd73SBarry Smith /*MC 1018d0609cedSBarry Smith MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per 1019bd481603SBarry Smith row in a matrix providing the data that one can use to correctly preallocate the matrix. 1020bd481603SBarry Smith 1021bd481603SBarry Smith Synopsis: 1022aaa7dc30SBarry Smith #include <petscmat.h> 1023d0609cedSBarry Smith PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz) 1024bd481603SBarry Smith 1025d083f849SBarry Smith Collective 1026bd481603SBarry Smith 1027bd481603SBarry Smith Input Parameters: 1028bd481603SBarry Smith + comm - the communicator that will share the eventually allocated matrix 1029859fcb39SBarry Smith . nrows - the number of LOCAL rows in the matrix 1030859fcb39SBarry Smith - ncols - the number of LOCAL columns in the matrix 1031bd481603SBarry Smith 1032bd481603SBarry Smith Output Parameters: 1033bd481603SBarry Smith + dnz - the array that will be passed to the matrix preallocation routines 1034a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1035bd481603SBarry Smith 10362ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1037bd481603SBarry Smith 1038bd481603SBarry Smith Notes: 10392ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 10402ef1f0ffSBarry Smith the use of this routine 10412ef1f0ffSBarry Smith 1042d0609cedSBarry Smith This is a macro that handles its own error checking, it does not return an error code. 1043d0609cedSBarry Smith 10442ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1045bd481603SBarry Smith 10462ef1f0ffSBarry Smith Developer Note: 1047af27ebaaSBarry Smith This is a MACRO, not a function, because it has a leading { that is closed by `PetscPreallocateFinalize()`. 1048bd481603SBarry Smith 10491cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1050db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 1051bd481603SBarry Smith M*/ 10529371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \ 10539371c9d4SSatish Balay do { \ 10543ba16761SJacob Faibussowitsch PetscInt __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \ 10553ba16761SJacob Faibussowitsch PetscInt PETSC_UNUSED __start; \ 10569566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \ 10579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \ 10589371c9d4SSatish Balay __start = __end - __ncols; \ 10599371c9d4SSatish Balay (void)__start; \ 10609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \ 10615f80ce2aSJacob Faibussowitsch __rstart -= __nrows 10627c922b88SBarry Smith 1063edd03b47SJacob Faibussowitsch #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateBegin()", ) MatPreallocateBegin(__VA_ARGS__) 1064d0609cedSBarry Smith 1065bd481603SBarry Smith /*MC 1066bd481603SBarry Smith MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1067bd481603SBarry Smith inserted using a local number of the rows and columns 1068bd481603SBarry Smith 1069bd481603SBarry Smith Synopsis: 1070aaa7dc30SBarry Smith #include <petscmat.h> 1071c1ac3661SBarry Smith PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1072bd481603SBarry Smith 1073bd481603SBarry Smith Not Collective 1074bd481603SBarry Smith 1075bd481603SBarry Smith Input Parameters: 1076784ac674SJed Brown + map - the row mapping from local numbering to global numbering 1077bd481603SBarry Smith . nrows - the number of rows indicated 10781d73ed98SBarry Smith . rows - the indices of the rows 1079784ac674SJed Brown . cmap - the column mapping from local to global numbering 1080bd481603SBarry Smith . ncols - the number of columns in the matrix 1081bd481603SBarry Smith . cols - the columns indicated 1082bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1083a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1084bd481603SBarry Smith 10852ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1086bd481603SBarry Smith 1087bd481603SBarry Smith Notes: 10882ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 10892ef1f0ffSBarry Smith the use of this routine 1090bd481603SBarry Smith 10912ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1092bd481603SBarry Smith 10931cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1094db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()` 1095bd481603SBarry Smith M*/ 109694bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 10979371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1098c4f061fbSSatish Balay 1099bd481603SBarry Smith /*MC 1100c1154cd5SBarry Smith MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1101c1154cd5SBarry Smith inserted using a local number of the rows and columns. This version removes any duplicate columns in cols 1102c1154cd5SBarry Smith 1103c1154cd5SBarry Smith Synopsis: 1104c1154cd5SBarry Smith #include <petscmat.h> 1105c1154cd5SBarry Smith PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1106c1154cd5SBarry Smith 1107c1154cd5SBarry Smith Not Collective 1108c1154cd5SBarry Smith 1109c1154cd5SBarry Smith Input Parameters: 1110c1154cd5SBarry Smith + map - the row mapping from local numbering to global numbering 1111c1154cd5SBarry Smith . nrows - the number of rows indicated 1112c1154cd5SBarry Smith . rows - the indices of the rows (these values are mapped to the global values) 1113c1154cd5SBarry Smith . cmap - the column mapping from local to global numbering 1114c1154cd5SBarry Smith . ncols - the number of columns in the matrix (this value will be changed if duplicate columns are found) 1115c1154cd5SBarry Smith . cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed) 1116c1154cd5SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1117a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1118c1154cd5SBarry Smith 11192ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1120c1154cd5SBarry Smith 1121c1154cd5SBarry Smith Notes: 11222ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11232ef1f0ffSBarry Smith the use of this routine 1124c1154cd5SBarry Smith 11252ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1126c1154cd5SBarry Smith 11271cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1128db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1129c1154cd5SBarry Smith M*/ 113094bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 11319371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1132c1154cd5SBarry Smith 1133c1154cd5SBarry Smith /*MC 1134d6e23781SBarry Smith MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1135bd481603SBarry Smith inserted using a local number of the rows and columns 1136bd481603SBarry Smith 1137bd481603SBarry Smith Synopsis: 1138aaa7dc30SBarry Smith #include <petscmat.h> 1139d6e23781SBarry Smith PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1140d6e23781SBarry Smith 1141d6e23781SBarry Smith Not Collective 1142d6e23781SBarry Smith 1143d6e23781SBarry Smith Input Parameters: 1144d6e23781SBarry Smith + map - the row mapping from local numbering to global numbering 1145d6e23781SBarry Smith . nrows - the number of rows indicated 1146d6e23781SBarry Smith . rows - the indices of the rows 1147d6e23781SBarry Smith . cmap - the column mapping from local to global numbering 1148d6e23781SBarry Smith . ncols - the number of columns in the matrix 1149d6e23781SBarry Smith . cols - the columns indicated 1150d6e23781SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1151a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1152d6e23781SBarry Smith 11532ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1154d6e23781SBarry Smith 1155d6e23781SBarry Smith Notes: 11562ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11572ef1f0ffSBarry Smith the use of this routine 1158d6e23781SBarry Smith 11592ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1160d6e23781SBarry Smith 11611cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1162db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()` 1163d6e23781SBarry Smith M*/ 116494bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 11659371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1166d6e23781SBarry Smith 1167d6e23781SBarry Smith /*MC 1168d6e23781SBarry Smith MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1169d6e23781SBarry Smith inserted using a local number of the rows and columns 1170d6e23781SBarry Smith 1171d6e23781SBarry Smith Synopsis: 1172d6e23781SBarry Smith #include <petscmat.h> 1173d6e23781SBarry Smith PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1174bd481603SBarry Smith 1175bd481603SBarry Smith Not Collective 1176bd481603SBarry Smith 1177bd481603SBarry Smith Input Parameters: 1178bd481603SBarry Smith + map - the mapping between local numbering and global numbering 1179bd481603SBarry Smith . nrows - the number of rows indicated 11801d73ed98SBarry Smith . rows - the indices of the rows 1181bd481603SBarry Smith . ncols - the number of columns in the matrix 1182bd481603SBarry Smith . cols - the columns indicated 1183bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1184a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1185bd481603SBarry Smith 11862ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1187bd481603SBarry Smith 1188bd481603SBarry Smith Notes: 11892ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11902ef1f0ffSBarry Smith the use of this routine 1191bd481603SBarry Smith 11922ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1193bd481603SBarry Smith 11941cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()` 1195db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1196bd481603SBarry Smith M*/ 119794bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \ 11989371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));) 1199e83a5d19SLisandro Dalcin 1200bd481603SBarry Smith /*MC 1201bd481603SBarry Smith MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1202bd481603SBarry Smith inserted using a local number of the rows and columns 1203bd481603SBarry Smith 1204bd481603SBarry Smith Synopsis: 1205aaa7dc30SBarry Smith #include <petscmat.h> 1206c1ac3661SBarry Smith PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1207bd481603SBarry Smith 1208bd481603SBarry Smith Not Collective 1209bd481603SBarry Smith 1210bd481603SBarry Smith Input Parameters: 121164075487SBarry Smith + row - the row 1212bd481603SBarry Smith . ncols - the number of columns in the matrix 1213a50f8bf6SHong Zhang - cols - the columns indicated 1214a50f8bf6SHong Zhang 1215a50f8bf6SHong Zhang Output Parameters: 1216a50f8bf6SHong Zhang + dnz - the array that will be passed to the matrix preallocation routines 1217a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1218bd481603SBarry Smith 12192ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1220bd481603SBarry Smith 1221bd481603SBarry Smith Notes: 12222ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12232ef1f0ffSBarry Smith the use of this routine 1224bd481603SBarry Smith 12252ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1226bd481603SBarry Smith 1227af27ebaaSBarry Smith This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin(). 12281620fd73SBarry Smith 12291cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1230db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1231bd481603SBarry Smith M*/ 12329371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \ 12339371c9d4SSatish Balay PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \ 123464075487SBarry Smith if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \ 1235a6042fd4SStefano Zampini else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 12369371c9d4SSatish Balay }) 12377c922b88SBarry Smith 1238bd481603SBarry Smith /*MC 1239d6e23781SBarry Smith MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1240bd481603SBarry Smith inserted using a local number of the rows and columns 1241bd481603SBarry Smith 1242bd481603SBarry Smith Synopsis: 1243aaa7dc30SBarry Smith #include <petscmat.h> 1244d6e23781SBarry Smith PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1245bd481603SBarry Smith 1246bd481603SBarry Smith Not Collective 1247bd481603SBarry Smith 1248bd481603SBarry Smith Input Parameters: 1249bd481603SBarry Smith + nrows - the number of rows indicated 12501d73ed98SBarry Smith . rows - the indices of the rows 1251bd481603SBarry Smith . ncols - the number of columns in the matrix 1252bd481603SBarry Smith . cols - the columns indicated 1253bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1254a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1255bd481603SBarry Smith 12562ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1257bd481603SBarry Smith 1258bd481603SBarry Smith Notes: 12592ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12602ef1f0ffSBarry Smith the use of this routine 1261bd481603SBarry Smith 12622ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1263bd481603SBarry Smith 1264af27ebaaSBarry Smith This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin(). 12651620fd73SBarry Smith 12661cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`, 1267db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1268bd481603SBarry Smith M*/ 126994bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \ 12709371c9d4SSatish Balay PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \ 1271d3d32019SBarry Smith if (cols[__i] >= __end) onz[row - __rstart]++; \ 1272a6042fd4SStefano Zampini else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 12739371c9d4SSatish Balay }) 1274d3d32019SBarry Smith 1275bd481603SBarry Smith /*MC 1276a6042fd4SStefano Zampini MatPreallocateLocation - An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists 127716371a99SBarry Smith 127816371a99SBarry Smith Synopsis: 1279aaa7dc30SBarry Smith #include <petscmat.h> 128016371a99SBarry Smith PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz) 128116371a99SBarry Smith 128216371a99SBarry Smith Not Collective 128316371a99SBarry Smith 128416371a99SBarry Smith Input Parameters: 1285a2b725a8SWilliam Gropp + A - matrix 128616371a99SBarry Smith . row - row where values exist (must be local to this process) 128716371a99SBarry Smith . ncols - number of columns 128816371a99SBarry Smith . cols - columns with nonzeros 128916371a99SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1290a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 129116371a99SBarry Smith 12922ef1f0ffSBarry Smith Level: deprecated (since v3.19) 129316371a99SBarry Smith 129416371a99SBarry Smith Notes: 12952ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12962ef1f0ffSBarry Smith the use of this routine 129716371a99SBarry Smith 12982ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 129916371a99SBarry Smith 1300af27ebaaSBarry Smith Developer Note: 1301af27ebaaSBarry Smith This is a MACRO, not a function, because it uses a bunch of variables private to the MatPreallocation.... routines. 130216371a99SBarry Smith 13031cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1304db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 130516371a99SBarry Smith M*/ 1306d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz)) 130716371a99SBarry Smith 130816371a99SBarry Smith /*MC 1309d0609cedSBarry Smith MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per 1310bd481603SBarry Smith row in a matrix providing the data that one can use to correctly preallocate the matrix. 1311bd481603SBarry Smith 1312bd481603SBarry Smith Synopsis: 1313aaa7dc30SBarry Smith #include <petscmat.h> 1314d0609cedSBarry Smith PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz) 1315bd481603SBarry Smith 1316d083f849SBarry Smith Collective 1317bd481603SBarry Smith 1318bd481603SBarry Smith Input Parameters: 131916371a99SBarry Smith + dnz - the array that was be passed to the matrix preallocation routines 1320a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1321bd481603SBarry Smith 13222ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1323bd481603SBarry Smith 1324bd481603SBarry Smith Notes: 13252ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 13262ef1f0ffSBarry Smith the use of this routine 1327d0609cedSBarry Smith 13282ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1329bd481603SBarry Smith 13302ef1f0ffSBarry Smith Developer Note: 1331af27ebaaSBarry Smith This is a MACRO, not a function, because it closes the { started in MatPreallocateBegin(). 13321620fd73SBarry Smith 13331cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1334db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 1335bd481603SBarry Smith M*/ 13369371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \ 13379371c9d4SSatish Balay PetscCall(PetscFree2(dnz, onz)); \ 13389371c9d4SSatish Balay } \ 13399371c9d4SSatish Balay while (0) 1340d0609cedSBarry Smith 1341edd03b47SJacob Faibussowitsch #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateEnd()", ) MatPreallocateEnd(__VA_ARGS__) 13427c922b88SBarry Smith 13437b80b807SBarry Smith /* Routines unique to particular data structures */ 1344014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *); 1345698d4c6aSKris Buschelman 1346014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *); 1347014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *); 1348698d4c6aSKris Buschelman 1349014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]); 1350014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]); 1351014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1352014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1353014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1354014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool); 13557b80b807SBarry Smith 1356a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4 1357a96a251dSBarry Smith 1358014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1359014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1360014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]); 136119b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt); 1362273d9f13SBarry Smith 1363014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1365014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1366014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1367014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1369014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1370014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]); 1371b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *); 1372252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *); 1373014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]); 1374014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]); 13759230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 13769230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 1377014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *); 1378273d9f13SBarry Smith 137949a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *); 1380ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt); 1381edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatDenseSetLDA()", ) static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda) 1382d71ae5a4SJacob Faibussowitsch { 13839371c9d4SSatish Balay return MatDenseSetLDA(A, lda); 13849371c9d4SSatish Balay } 1385014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *); 13861b807ce4Svictorle 1387621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1388621e819fSSatish Balay 1389014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat); 1390014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat); 13912e8a6d31SBarry Smith 1392014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *); 13937cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *); 13947b80b807SBarry Smith /* 13957b80b807SBarry Smith These routines are not usually accessed directly, rather solving is 139694b7f48cSBarry Smith done through the KSP and PC interfaces. 13977b80b807SBarry Smith */ 13987b80b807SBarry Smith 139976bdecfbSBarry Smith /*J 14002ef1f0ffSBarry Smith MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used 14012ef1f0ffSBarry Smith to reduce fill in sparse factorizations. 1402d9274352SBarry Smith 1403d9274352SBarry Smith Level: beginner 1404d9274352SBarry Smith 14052c7c0729SBarry Smith Notes: 140616a05f60SBarry Smith If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one 140716a05f60SBarry Smith of its own. 14082c7c0729SBarry Smith 14092ef1f0ffSBarry Smith There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()` 14102ef1f0ffSBarry Smith 14112ef1f0ffSBarry Smith Developer Note: 14122ef1f0ffSBarry Smith This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning` 14132ef1f0ffSBarry Smith 14141cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`, 14152ef1f0ffSBarry Smith `PCFactorSetOrderingType()` 141676bdecfbSBarry Smith J*/ 141719fd82e9SBarry Smith typedef const char *MatOrderingType; 14182692d6eeSBarry Smith #define MATORDERINGNATURAL "natural" 14192692d6eeSBarry Smith #define MATORDERINGND "nd" 14202692d6eeSBarry Smith #define MATORDERING1WD "1wd" 14212692d6eeSBarry Smith #define MATORDERINGRCM "rcm" 14222692d6eeSBarry Smith #define MATORDERINGQMD "qmd" 14232692d6eeSBarry Smith #define MATORDERINGROWLENGTH "rowlength" 1424510184a7SJed Brown #define MATORDERINGWBM "wbm" 1425fc1bef75SJed Brown #define MATORDERINGSPECTRAL "spectral" 1426312e372aSBarry Smith #define MATORDERINGAMD "amd" /* only works if UMFPACK is installed with PETSc */ 1427048412efSPablo Brubeck #define MATORDERINGMETISND "metisnd" /* only works if METIS is installed with PETSc */ 14289bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */ 14292c7c0729SBarry Smith #define MATORDERINGEXTERNAL "external" /* uses an ordering type internal to the factorization package */ 1430b12f92e5SBarry Smith 143119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrdering(Mat, MatOrderingType, IS *, IS *); 1432140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrderingList(PetscFunctionList *); 1433bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *)); 1434140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList; 1435d4fbbf0eSBarry Smith 1436013e2dc7SBarry Smith #include "petscmatcoarsen.h" 1437013e2dc7SBarry Smith 1438014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS); 1439fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *); 1440a2ce50c7SBarry Smith 14414ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *); 14424ac6704cSBarry Smith 1443d91e6319SBarry Smith /*S 14442ef1f0ffSBarry Smith MatFactorShiftType - Type of numeric shift used for factorizations 1445d90ac83dSHong Zhang 14462ef1f0ffSBarry Smith Values: 14472ef1f0ffSBarry Smith + `MAT_SHIFT_NONE` - do not shift the matrix diagonal entries 14482ef1f0ffSBarry Smith . `MAT_SHIFT_NONZERO` - shift the entries to be non-zero 14492ef1f0ffSBarry Smith . `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite 14502ef1f0ffSBarry Smith - `MAT_SHIFT_INBLOCKS` - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ` 1451d90ac83dSHong Zhang 14522ef1f0ffSBarry Smith Level: intermediate 14532ef1f0ffSBarry Smith 14541cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()` 1455d90ac83dSHong Zhang S*/ 14569371c9d4SSatish Balay typedef enum { 14579371c9d4SSatish Balay MAT_SHIFT_NONE, 14589371c9d4SSatish Balay MAT_SHIFT_NONZERO, 14599371c9d4SSatish Balay MAT_SHIFT_POSITIVE_DEFINITE, 14609371c9d4SSatish Balay MAT_SHIFT_INBLOCKS 14619371c9d4SSatish Balay } MatFactorShiftType; 14626a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[]; 14635e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[]; 1464d90ac83dSHong Zhang 1465d90ac83dSHong Zhang /*S 1466ec5066bdSBarry Smith MatFactorError - indicates what type of error was generated in a matrix factorization 14679aa7eafdSHong Zhang 14682ef1f0ffSBarry Smith Values: 14692ef1f0ffSBarry Smith + `MAT_FACTOR_NOERROR` - there was no error during the factorization 14702ef1f0ffSBarry Smith . `MAT_FACTOR_STRUCT_ZEROPIVOT` - there was a missing entry in a diagonal location of the matrix 14712ef1f0ffSBarry Smith . `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization 14722ef1f0ffSBarry Smith . `MAT_FACTOR_OUTMEMORY` - the factorization has run out of memory 14732ef1f0ffSBarry Smith - `MAT_FACTOR_OTHER` - some other error has occurred. 14749aa7eafdSHong Zhang 14752ef1f0ffSBarry Smith Level: intermediate 147600e125f8SBarry Smith 14772ef1f0ffSBarry Smith Note: 14782ef1f0ffSBarry Smith When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason` 14792ef1f0ffSBarry Smith 14801cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`, 14812ef1f0ffSBarry Smith `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason` 14829aa7eafdSHong Zhang S*/ 14839371c9d4SSatish Balay typedef enum { 14849371c9d4SSatish Balay MAT_FACTOR_NOERROR, 14859371c9d4SSatish Balay MAT_FACTOR_STRUCT_ZEROPIVOT, 14869371c9d4SSatish Balay MAT_FACTOR_NUMERIC_ZEROPIVOT, 14879371c9d4SSatish Balay MAT_FACTOR_OUTMEMORY, 14889371c9d4SSatish Balay MAT_FACTOR_OTHER 14899371c9d4SSatish Balay } MatFactorError; 14909aa7eafdSHong Zhang 149100e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *); 1492b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat); 14937b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *); 149400e125f8SBarry Smith 14959aa7eafdSHong Zhang /*S 1496422a814eSBarry Smith MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization 1497b00f7748SHong Zhang 1498b00f7748SHong Zhang Level: developer 1499b00f7748SHong Zhang 15002ef1f0ffSBarry Smith Note: 15012ef1f0ffSBarry Smith You can use `MatFactorInfoInitialize()` to set default values. 1502b00f7748SHong Zhang 15032ef1f0ffSBarry Smith Fortran Note: 15042ef1f0ffSBarry Smith The data is available in a double precision arrays of size `MAT_FACTORINFO_SIZE` 15052ef1f0ffSBarry Smith 15061cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, 15072ef1f0ffSBarry Smith `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()` 1508b00f7748SHong Zhang S*/ 1509b00f7748SHong Zhang typedef struct { 151015e8a5b3SHong Zhang PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */ 151185317021SBarry Smith PetscReal usedt; 151215e8a5b3SHong Zhang PetscReal dt; /* drop tolerance */ 1513b00f7748SHong Zhang PetscReal dtcol; /* tolerance for pivoting */ 151415e8a5b3SHong Zhang PetscReal dtcount; /* maximum nonzeros to be allowed per row */ 151567e28bfeSBarry Smith PetscReal fill; /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */ 1516348344bbSBarry Smith PetscReal levels; /* ICC/ILU(levels) */ 1517bcd9e38bSBarry Smith PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 1518bcd9e38bSBarry Smith factorization may be faster if do not pivot */ 151915e8a5b3SHong Zhang PetscReal zeropivot; /* pivot is called zero if less than this */ 1520f4db908eSBarry Smith PetscReal shifttype; /* type of shift added to matrix factor to prevent zero pivots */ 1521f4db908eSBarry Smith PetscReal shiftamount; /* how large the shift is */ 152215e8a5b3SHong Zhang } MatFactorInfo; 1523ffa6d0a5SLois Curfman McInnes 1524014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *); 15259a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *); 15269a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15279a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *); 15289a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *); 15299a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *); 15309a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 15319a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 15329a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15339a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *); 15349a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *); 15353f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *); 15363f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15373f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *); 1538014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *); 1539014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec); 1540014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec); 1541014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec); 1542014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec); 1543014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec); 1544014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec); 1545014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs); 15467c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat); 15477c2f51b8SStefano Zampini 15489371c9d4SSatish Balay typedef enum { 15499371c9d4SSatish Balay MAT_FACTOR_SCHUR_UNFACTORED, 15509371c9d4SSatish Balay MAT_FACTOR_SCHUR_FACTORED, 15519371c9d4SSatish Balay MAT_FACTOR_SCHUR_INVERTED 15529371c9d4SSatish Balay } MatFactorSchurStatus; 15538e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS); 15547c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 15557c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus); 15565a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat); 15577c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 15585a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec); 15595a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec); 15606dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat); 1561bb5a7306SBarry Smith 15628a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat); 1563d91e6319SBarry Smith /*E 1564d91e6319SBarry Smith MatSORType - What type of (S)SOR to perform 1565bb1eb677SSatish Balay 15662ef1f0ffSBarry Smith Values: 15672ef1f0ffSBarry Smith + `SOR_FORWARD_SWEEP` - do a sweep from the first row of the matrix to the last 15682ef1f0ffSBarry Smith . `SOR_BACKWARD_SWEEP` - do a sweep from the last row to the first 15692ef1f0ffSBarry Smith . `SOR_SYMMETRIC_SWEEP` - do a sweep from the first row to the last and then back to the first 1570af27ebaaSBarry Smith . `SOR_LOCAL_FORWARD_SWEEP` - each MPI process does its own forward sweep with no communication 1571af27ebaaSBarry Smith . `SOR_LOCAL_BACKWARD_SWEEP` - each MPI process does its own backward sweep with no communication 1572af27ebaaSBarry Smith . `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI process does its own symmetric sweep with no communication 15732ef1f0ffSBarry Smith . `SOR_ZERO_INITIAL_GUESS` - indicates the initial solution is zero so the sweep can avoid unneeded computation 15742ef1f0ffSBarry Smith . `SOR_EISENSTAT` - apply the Eisentat application of SOR, see `PCEISENSTAT` 15752ef1f0ffSBarry Smith . `SOR_APPLY_UPPER` - multiply by the upper triangular portion of the matrix 15762ef1f0ffSBarry Smith - `SOR_APPLY_LOWER` - multiply by the lower triangular portion of the matrix 15772ef1f0ffSBarry Smith 1578d91e6319SBarry Smith Level: beginner 1579d91e6319SBarry Smith 15802ef1f0ffSBarry Smith Note: 15812ef1f0ffSBarry Smith These may be bitwise ORd together 1582d9274352SBarry Smith 15832ef1f0ffSBarry Smith Developer Note: 15842ef1f0ffSBarry Smith Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below 1585d91e6319SBarry Smith 15861cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSOR()` 1587d91e6319SBarry Smith E*/ 15889371c9d4SSatish Balay typedef enum { 15899371c9d4SSatish Balay SOR_FORWARD_SWEEP = 1, 15909371c9d4SSatish Balay SOR_BACKWARD_SWEEP = 2, 15919371c9d4SSatish Balay SOR_SYMMETRIC_SWEEP = 3, 15929371c9d4SSatish Balay SOR_LOCAL_FORWARD_SWEEP = 4, 15939371c9d4SSatish Balay SOR_LOCAL_BACKWARD_SWEEP = 8, 15949371c9d4SSatish Balay SOR_LOCAL_SYMMETRIC_SWEEP = 12, 15959371c9d4SSatish Balay SOR_ZERO_INITIAL_GUESS = 16, 15969371c9d4SSatish Balay SOR_EISENSTAT = 32, 15979371c9d4SSatish Balay SOR_APPLY_UPPER = 64, 15989371c9d4SSatish Balay SOR_APPLY_LOWER = 128 15999371c9d4SSatish Balay } MatSORType; 1600014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec); 16018ed539a5SBarry Smith 16027086a01eSPeter Brune /*S 16037086a01eSPeter Brune MatColoring - Object for managing the coloring of matrices. 16047086a01eSPeter Brune 16057086a01eSPeter Brune Level: beginner 16067086a01eSPeter Brune 1607ec5066bdSBarry Smith Notes: 160887497f52SBarry Smith Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 160987497f52SBarry Smith matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors). 1610ec5066bdSBarry Smith 161187497f52SBarry Smith Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This 16122ef1f0ffSBarry Smith same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices. 1613ec5066bdSBarry Smith 16141cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`, 16152ef1f0ffSBarry Smith `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`, 16162ef1f0ffSBarry Smith `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen` 16177086a01eSPeter Brune S*/ 1618d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring; 1619d4db15c4SBarry Smith 1620d4db15c4SBarry Smith /*J 1621d4db15c4SBarry Smith MatColoringType - String with the name of a PETSc matrix coloring 1622d9274352SBarry Smith 1623d9274352SBarry Smith Level: beginner 1624d9274352SBarry Smith 16251cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring` 162676bdecfbSBarry Smith J*/ 162719fd82e9SBarry Smith typedef const char *MatColoringType; 16285567d71aSPeter Brune #define MATCOLORINGJP "jp" 1629b9acb617SPeter Brune #define MATCOLORINGPOWER "power" 16302692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural" 16312692d6eeSBarry Smith #define MATCOLORINGSL "sl" 16322692d6eeSBarry Smith #define MATCOLORINGLF "lf" 16332692d6eeSBarry Smith #define MATCOLORINGID "id" 16348121bdceSPeter Brune #define MATCOLORINGGREEDY "greedy" 1635b12f92e5SBarry Smith 16368ac6da0aSPeter Brune /*E 16372ef1f0ffSBarry Smith MatColoringWeightType - Type of weight scheme used for the coloring algorithm 16388ac6da0aSPeter Brune 16392ef1f0ffSBarry Smith Values: 164087497f52SBarry Smith + `MAT_COLORING_RANDOM` - Random weights 164187497f52SBarry Smith . `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering. 164287497f52SBarry Smith - `MAT_COLORING_LF` - Last-first weighting. 16438ac6da0aSPeter Brune 16448ac6da0aSPeter Brune Level: intermediate 16458ac6da0aSPeter Brune 16461cc06b55SBarry Smith .seealso: [](ch_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()` 16478ac6da0aSPeter Brune E*/ 16489371c9d4SSatish Balay typedef enum { 16499371c9d4SSatish Balay MAT_COLORING_WEIGHT_RANDOM, 16509371c9d4SSatish Balay MAT_COLORING_WEIGHT_LEXICAL, 16519371c9d4SSatish Balay MAT_COLORING_WEIGHT_LF, 16529371c9d4SSatish Balay MAT_COLORING_WEIGHT_SL 16539371c9d4SSatish Balay } MatColoringWeightType; 16548ac6da0aSPeter Brune 1655335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *); 1656d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *); 1657335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *); 1658335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer); 1659335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType); 1660335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring); 1661335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt); 1662335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *); 1663335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt); 1664335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *); 1665335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *); 1666335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring)); 1667014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *); 16688ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType); 1669c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *); 16708ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm); 1671bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring); 1672edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatColoringTest()", ) static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring) 1673d71ae5a4SJacob Faibussowitsch { 16749371c9d4SSatish Balay return MatColoringTest(matcoloring, iscoloring); 16759371c9d4SSatish Balay } 1676bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring); 1677639f9d9dSBarry Smith 1678d9274352SBarry Smith /*S 167987497f52SBarry Smith MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring 1680639f9d9dSBarry Smith 1681d9274352SBarry Smith Level: beginner 1682d9274352SBarry Smith 1683ec5066bdSBarry Smith Notes: 168487497f52SBarry Smith This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()` 1685ec5066bdSBarry Smith 16862ef1f0ffSBarry Smith The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object 16872ef1f0ffSBarry Smith 16881cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()` 1689d9274352SBarry Smith S*/ 1690e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring; 1691639f9d9dSBarry Smith 1692014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *); 1693014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *); 1694014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer); 1695014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *); 1696014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **); 1697014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal); 1698014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring); 1699d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *); 1700014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec); 1701edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]); 1702f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring); 1703f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt); 1704bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *); 1705b1683b59SHong Zhang 1706b1683b59SHong Zhang /*S 1707af27ebaaSBarry Smith MatTransposeColoring - Object for computing a sparse matrix product $C = A*B^T$ via coloring 1708b1683b59SHong Zhang 17092ef1f0ffSBarry Smith Level: developer 1710b1683b59SHong Zhang 17111cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()` 1712b1683b59SHong Zhang S*/ 1713b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring; 1714b1683b59SHong Zhang 1715014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *); 1716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat); 1717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat); 1718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *); 1719b1683b59SHong Zhang 1720d9274352SBarry Smith /*S 1721d9274352SBarry Smith MatPartitioning - Object for managing the partitioning of a matrix or graph 1722d9274352SBarry Smith 1723d9274352SBarry Smith Level: beginner 1724d9274352SBarry Smith 172587497f52SBarry Smith Note: 172687497f52SBarry Smith There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations 172787497f52SBarry Smith via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`) 1728ec5066bdSBarry Smith 1729ec5066bdSBarry Smith Developers Note: 17302ef1f0ffSBarry Smith It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed 1731ec5066bdSBarry Smith 17321cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`, 17332ef1f0ffSBarry Smith `MatCoarsenType`, `MatCoarsenType` 1734d9274352SBarry Smith S*/ 173591e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning; 1736d9274352SBarry Smith 173776bdecfbSBarry Smith /*J 17388f6c3df8SBarry Smith MatPartitioningType - String with the name of a PETSc matrix partitioning 1739d9274352SBarry Smith 1740d9274352SBarry Smith Level: beginner 17410d04baf8SBarry Smith dm 17421cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`, 17432ef1f0ffSBarry Smith `MatCoarsenType`, `MatCoarsenType` 174476bdecfbSBarry Smith J*/ 174519fd82e9SBarry Smith typedef const char *MatPartitioningType; 17462692d6eeSBarry Smith #define MATPARTITIONINGCURRENT "current" 1747aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE "average" 17482692d6eeSBarry Smith #define MATPARTITIONINGSQUARE "square" 17492692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis" 17502692d6eeSBarry Smith #define MATPARTITIONINGCHACO "chaco" 17512692d6eeSBarry Smith #define MATPARTITIONINGPARTY "party" 175250d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch" 175388d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch" 175471306c60Sjroman 1755014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *); 175619fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType); 1757014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt); 1758014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat); 1759252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt); 1760014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]); 1761014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]); 1762ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool); 1763ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *); 1764014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *); 1765fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *); 1766668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS); 1767f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *); 1768014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *); 1769bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning)); 1770014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer); 1771fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]); 1772014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning); 177319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *); 1774ca161407SBarry Smith 177527538973SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part); 1776014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning); 1777014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *); 17780752156aSBarry Smith 17799371c9d4SSatish Balay typedef enum { 17809371c9d4SSatish Balay MP_CHACO_MULTILEVEL = 1, 17819371c9d4SSatish Balay MP_CHACO_SPECTRAL = 2, 17829371c9d4SSatish Balay MP_CHACO_LINEAR = 4, 17839371c9d4SSatish Balay MP_CHACO_RANDOM = 5, 17849371c9d4SSatish Balay MP_CHACO_SCATTERED = 6 17859371c9d4SSatish Balay } MPChacoGlobalType; 17866a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[]; 17879371c9d4SSatish Balay typedef enum { 17889371c9d4SSatish Balay MP_CHACO_KERNIGHAN = 1, 17899371c9d4SSatish Balay MP_CHACO_NONE = 2 17909371c9d4SSatish Balay } MPChacoLocalType; 17916a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[]; 17929371c9d4SSatish Balay typedef enum { 17939371c9d4SSatish Balay MP_CHACO_LANCZOS = 0, 17949371c9d4SSatish Balay MP_CHACO_RQI = 1 17959371c9d4SSatish Balay } MPChacoEigenType; 17966a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[]; 1797b6956c12SJose Roman 1798014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType); 1799014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *); 1800014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType); 1801014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *); 1802014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal); 1803014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType); 1804014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *); 1805014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal); 1806014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *); 1807014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt); 1808014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *); 180971306c60Sjroman 181071306c60Sjroman #define MP_PARTY_OPT "opt" 181171306c60Sjroman #define MP_PARTY_LIN "lin" 181271306c60Sjroman #define MP_PARTY_SCA "sca" 181371306c60Sjroman #define MP_PARTY_RAN "ran" 181471306c60Sjroman #define MP_PARTY_GBF "gbf" 181571306c60Sjroman #define MP_PARTY_GCF "gcf" 181671306c60Sjroman #define MP_PARTY_BUB "bub" 181771306c60Sjroman #define MP_PARTY_DEF "def" 1818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *); 181971306c60Sjroman #define MP_PARTY_HELPFUL_SETS "hs" 182071306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl" 182171306c60Sjroman #define MP_PARTY_NONE "no" 1822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *); 1823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal); 1824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool); 1825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool); 182671306c60Sjroman 18279371c9d4SSatish Balay typedef enum { 18289371c9d4SSatish Balay MP_PTSCOTCH_DEFAULT, 18299371c9d4SSatish Balay MP_PTSCOTCH_QUALITY, 18309371c9d4SSatish Balay MP_PTSCOTCH_SPEED, 18319371c9d4SSatish Balay MP_PTSCOTCH_BALANCE, 18329371c9d4SSatish Balay MP_PTSCOTCH_SAFETY, 18339371c9d4SSatish Balay MP_PTSCOTCH_SCALABILITY 18349371c9d4SSatish Balay } MPPTScotchStrategyType; 18356a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[]; 1836e0f1cffaSJose Roman 1837014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal); 1838014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *); 1839014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType); 1840014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *); 184171306c60Sjroman 1842b43b03e9SMark F. Adams /* 18436294fa2bSFande Kong * hierarchical partitioning 18446294fa2bSFande Kong */ 18454e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *); 18464e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *); 18474e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt); 18484e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt); 18496294fa2bSFande Kong 1850014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *); 1851591294e4SBarry Smith 18520752156aSBarry Smith /* 1853c786d857SStefano Zampini If you add entries here you must also add them to src/mat/f90-mod/petscmat.h 1854c786d857SStefano Zampini If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx 1855d4fbbf0eSBarry Smith */ 18569371c9d4SSatish Balay typedef enum { 18579371c9d4SSatish Balay MATOP_SET_VALUES = 0, 18581c1c02c0SLois Curfman McInnes MATOP_GET_ROW = 1, 18591c1c02c0SLois Curfman McInnes MATOP_RESTORE_ROW = 2, 18601c1c02c0SLois Curfman McInnes MATOP_MULT = 3, 18611c1c02c0SLois Curfman McInnes MATOP_MULT_ADD = 4, 18627c922b88SBarry Smith MATOP_MULT_TRANSPOSE = 5, 18637c922b88SBarry Smith MATOP_MULT_TRANSPOSE_ADD = 6, 18641c1c02c0SLois Curfman McInnes MATOP_SOLVE = 7, 18651c1c02c0SLois Curfman McInnes MATOP_SOLVE_ADD = 8, 18667c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE = 9, 18677c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE_ADD = 10, 18681c1c02c0SLois Curfman McInnes MATOP_LUFACTOR = 11, 18691c1c02c0SLois Curfman McInnes MATOP_CHOLESKYFACTOR = 12, 1870a714c06dSBarry Smith MATOP_SOR = 13, 18711c1c02c0SLois Curfman McInnes MATOP_TRANSPOSE = 14, 18721c1c02c0SLois Curfman McInnes MATOP_GETINFO = 15, 18731c1c02c0SLois Curfman McInnes MATOP_EQUAL = 16, 18741c1c02c0SLois Curfman McInnes MATOP_GET_DIAGONAL = 17, 18751c1c02c0SLois Curfman McInnes MATOP_DIAGONAL_SCALE = 18, 18761c1c02c0SLois Curfman McInnes MATOP_NORM = 19, 18771c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_BEGIN = 20, 18781c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_END = 21, 1879d519adbfSMatthew Knepley MATOP_SET_OPTION = 22, 1880d519adbfSMatthew Knepley MATOP_ZERO_ENTRIES = 23, 1881d519adbfSMatthew Knepley MATOP_ZERO_ROWS = 24, 1882d519adbfSMatthew Knepley MATOP_LUFACTOR_SYMBOLIC = 25, 1883d519adbfSMatthew Knepley MATOP_LUFACTOR_NUMERIC = 26, 1884d519adbfSMatthew Knepley MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27, 1885d519adbfSMatthew Knepley MATOP_CHOLESKY_FACTOR_NUMERIC = 28, 1886e5f2d425SStefano Zampini MATOP_SETUP = 29, 1887d519adbfSMatthew Knepley MATOP_ILUFACTOR_SYMBOLIC = 30, 1888d519adbfSMatthew Knepley MATOP_ICCFACTOR_SYMBOLIC = 31, 1889a5b7ff6bSBarry Smith MATOP_GET_DIAGONAL_BLOCK = 32, 1890e5f2d425SStefano Zampini MATOP_SET_INF = 33, 1891d519adbfSMatthew Knepley MATOP_DUPLICATE = 34, 1892d519adbfSMatthew Knepley MATOP_FORWARD_SOLVE = 35, 1893d519adbfSMatthew Knepley MATOP_BACKWARD_SOLVE = 36, 1894d519adbfSMatthew Knepley MATOP_ILUFACTOR = 37, 1895d519adbfSMatthew Knepley MATOP_ICCFACTOR = 38, 1896d519adbfSMatthew Knepley MATOP_AXPY = 39, 18977dae84e0SHong Zhang MATOP_CREATE_SUBMATRICES = 40, 1898d519adbfSMatthew Knepley MATOP_INCREASE_OVERLAP = 41, 1899d519adbfSMatthew Knepley MATOP_GET_VALUES = 42, 1900d519adbfSMatthew Knepley MATOP_COPY = 43, 1901d519adbfSMatthew Knepley MATOP_GET_ROW_MAX = 44, 1902d519adbfSMatthew Knepley MATOP_SCALE = 45, 1903d519adbfSMatthew Knepley MATOP_SHIFT = 46, 190435153367SBarry Smith MATOP_DIAGONAL_SET = 47, 19059d39f69dSJed Brown MATOP_ZERO_ROWS_COLUMNS = 48, 19069d39f69dSJed Brown MATOP_SET_RANDOM = 49, 1907d519adbfSMatthew Knepley MATOP_GET_ROW_IJ = 50, 1908d519adbfSMatthew Knepley MATOP_RESTORE_ROW_IJ = 51, 1909d519adbfSMatthew Knepley MATOP_GET_COLUMN_IJ = 52, 1910d519adbfSMatthew Knepley MATOP_RESTORE_COLUMN_IJ = 53, 1911d519adbfSMatthew Knepley MATOP_FDCOLORING_CREATE = 54, 1912d519adbfSMatthew Knepley MATOP_COLORING_PATCH = 55, 1913d519adbfSMatthew Knepley MATOP_SET_UNFACTORED = 56, 1914d519adbfSMatthew Knepley MATOP_PERMUTE = 57, 1915d519adbfSMatthew Knepley MATOP_SET_VALUES_BLOCKED = 58, 19167dae84e0SHong Zhang MATOP_CREATE_SUBMATRIX = 59, 1917d519adbfSMatthew Knepley MATOP_DESTROY = 60, 1918d519adbfSMatthew Knepley MATOP_VIEW = 61, 1919d519adbfSMatthew Knepley MATOP_CONVERT_FROM = 62, 1920e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_63=63 */ 19217bab7c10SHong Zhang MATOP_MATMAT_MULT_SYMBOLIC = 64, 19227bab7c10SHong Zhang MATOP_MATMAT_MULT_NUMERIC = 65, 1923d519adbfSMatthew Knepley MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66, 1924d519adbfSMatthew Knepley MATOP_SET_VALUES_LOCAL = 67, 1925d519adbfSMatthew Knepley MATOP_ZERO_ROWS_LOCAL = 68, 1926d519adbfSMatthew Knepley MATOP_GET_ROW_MAX_ABS = 69, 1927d519adbfSMatthew Knepley MATOP_GET_ROW_MIN_ABS = 70, 1928d519adbfSMatthew Knepley MATOP_CONVERT = 71, 1929e5f2d425SStefano Zampini MATOP_HAS_OPERATION = 72, 19309d39f69dSJed Brown /* MATOP_PLACEHOLDER_73=73, */ 1931d519adbfSMatthew Knepley MATOP_SET_VALUES_ADIFOR = 74, 1932d519adbfSMatthew Knepley MATOP_FD_COLORING_APPLY = 75, 1933d519adbfSMatthew Knepley MATOP_SET_FROM_OPTIONS = 76, 1934e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_77=77, */ 1935e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_78=78, */ 19369d39f69dSJed Brown MATOP_FIND_ZERO_DIAGONALS = 79, 1937d519adbfSMatthew Knepley MATOP_MULT_MULTIPLE = 80, 1938d519adbfSMatthew Knepley MATOP_SOLVE_MULTIPLE = 81, 1939d519adbfSMatthew Knepley MATOP_GET_INERTIA = 82, 1940d519adbfSMatthew Knepley MATOP_LOAD = 83, 1941d519adbfSMatthew Knepley MATOP_IS_SYMMETRIC = 84, 1942d519adbfSMatthew Knepley MATOP_IS_HERMITIAN = 85, 1943d519adbfSMatthew Knepley MATOP_IS_STRUCTURALLY_SYMMETRIC = 86, 1944820469bcSHong Zhang MATOP_SET_VALUES_BLOCKEDLOCAL = 87, 1945b41ce5d5SBarry Smith MATOP_CREATE_VECS = 88, 1946e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_89=89, */ 1947d519adbfSMatthew Knepley MATOP_MAT_MULT_SYMBOLIC = 90, 1948d519adbfSMatthew Knepley MATOP_MAT_MULT_NUMERIC = 91, 1949e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_92=92, */ 1950d519adbfSMatthew Knepley MATOP_PTAP_SYMBOLIC = 93, 1951d519adbfSMatthew Knepley MATOP_PTAP_NUMERIC = 94, 1952e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_95=95, */ 1953bda6c4cbSBarry Smith MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96, 1954bda6c4cbSBarry Smith MATOP_MAT_TRANSPOSE_MULT_NUMER = 97, 1955e5f2d425SStefano Zampini MATOP_BIND_TO_CPU = 98, 19567a3c3d58SStefano Zampini MATOP_PRODUCTSETFROMOPTIONS = 99, 19577a3c3d58SStefano Zampini MATOP_PRODUCTSYMBOLIC = 100, 19587a3c3d58SStefano Zampini MATOP_PRODUCTNUMERIC = 101, 1959d519adbfSMatthew Knepley MATOP_CONJUGATE = 102, 1960e5f2d425SStefano Zampini MATOP_VIEW_NATIVE = 103, 1961d519adbfSMatthew Knepley MATOP_SET_VALUES_ROW = 104, 1962d519adbfSMatthew Knepley MATOP_REAL_PART = 105, 1963bda6c4cbSBarry Smith MATOP_IMAGINARY_PART = 106, 1964bda6c4cbSBarry Smith MATOP_GET_ROW_UPPER_TRIANGULAR = 107, 1965bda6c4cbSBarry Smith MATOP_RESTORE_ROW_UPPER_TRIANG = 108, 1966bda6c4cbSBarry Smith MATOP_MAT_SOLVE = 109, 196729eadf9eSStefano Zampini MATOP_MAT_SOLVE_TRANSPOSE = 110, 1968d519adbfSMatthew Knepley MATOP_GET_ROW_MIN = 111, 19690e8d04f7SBarry Smith MATOP_GET_COLUMN_VECTOR = 112, 1970d519adbfSMatthew Knepley MATOP_MISSING_DIAGONAL = 113, 19710e8d04f7SBarry Smith MATOP_GET_SEQ_NONZERO_STRUCTUR = 114, 197289c6957cSBarry Smith MATOP_CREATE = 115, 197389c6957cSBarry Smith MATOP_GET_GHOSTS = 116, 19740e8d04f7SBarry Smith MATOP_GET_LOCAL_SUB_MATRIX = 117, 19750e8d04f7SBarry Smith MATOP_RESTORE_LOCALSUB_MATRIX = 118, 1976eeffb40dSHong Zhang MATOP_MULT_DIAGONAL_BLOCK = 119, 19770e8d04f7SBarry Smith MATOP_HERMITIAN_TRANSPOSE = 120, 19780e8d04f7SBarry Smith MATOP_MULT_HERMITIAN_TRANSPOSE = 121, 19790e8d04f7SBarry Smith MATOP_MULT_HERMITIAN_TRANS_ADD = 122, 19800e8d04f7SBarry Smith MATOP_GET_MULTI_PROC_BLOCK = 123, 19819d39f69dSJed Brown MATOP_FIND_NONZERO_ROWS = 124, 19820e8d04f7SBarry Smith MATOP_GET_COLUMN_NORMS = 125, 19839d39f69dSJed Brown MATOP_INVERT_BLOCK_DIAGONAL = 126, 1984e5f2d425SStefano Zampini MATOP_INVERT_VBLOCK_DIAGONAL = 127, 1985b41ce5d5SBarry Smith MATOP_CREATE_SUB_MATRICES_MPI = 128, 19862b8ad9a3SHong Zhang MATOP_SET_VALUES_BATCH = 129, 1987e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_130=130, */ 19880e8d04f7SBarry Smith MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131, 1989e9b602ebSSatish Balay MATOP_TRANSPOSE_MAT_MULT_NUMER = 132, 19900e8d04f7SBarry Smith MATOP_TRANSPOSE_COLORING_CREAT = 133, 19910e8d04f7SBarry Smith MATOP_TRANS_COLORING_APPLY_SPT = 134, 19920e8d04f7SBarry Smith MATOP_TRANS_COLORING_APPLY_DEN = 135, 1993e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_136=136, */ 19940e8d04f7SBarry Smith MATOP_RART_SYMBOLIC = 137, 19950e8d04f7SBarry Smith MATOP_RART_NUMERIC = 138, 1996e09a3074SHong Zhang MATOP_SET_BLOCK_SIZES = 139, 1997f9426fe0SMark Adams MATOP_AYPX = 140, 19981919a2e2SJed Brown MATOP_RESIDUAL = 141, 19999c8f2541SHong Zhang MATOP_FDCOLORING_SETUP = 142, 2000e5f2d425SStefano Zampini MATOP_FIND_OFFBLOCK_ENTRIES = 143, 20012d033e1fSHong Zhang MATOP_MPICONCATENATESEQ = 144, 2002bb01b7b0SPatrick Sanan MATOP_DESTROYSUBMATRICES = 145, 2003e265f6d6SPatrick Sanan MATOP_TRANSPOSE_SOLVE = 146, 2004e265f6d6SPatrick Sanan MATOP_GET_VALUES_LOCAL = 147 2005fae171e0SBarry Smith } MatOperation; 20060c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void)); 2007976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void)); 2008976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *); 200994342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *); 2010edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatProductClear()", ) static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A) 2011d71ae5a4SJacob Faibussowitsch { 20129371c9d4SSatish Balay return MatProductClear(A); 20139371c9d4SSatish Balay } 2014014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void)); 2015014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void)); 2016014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *); 2017800f99ffSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *)); 2018db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType); 2019f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 2020f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 20210c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat); 2022b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType); 2023b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *); 2024112a2221SBarry Smith 202590ace30eSBarry Smith /* 202690ace30eSBarry Smith Codes for matrices stored on disk. By default they are 202790ace30eSBarry Smith stored in a universal format. By changing the format with 20286a9046bcSBarry Smith PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will 202990ace30eSBarry Smith be stored in a way natural for the matrix, for example dense matrices 203090ace30eSBarry Smith would be stored as dense. Matrices stored this way may only be 2031f4403165SShri Abhyankar read into matrices of the same type. 203290ace30eSBarry Smith */ 203390ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1 203490ace30eSBarry Smith 2035014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal); 203675d48cdbSStefano Zampini 20378546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType); 203875d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 203975d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool); 2040f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool); 2041014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *); 20423b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *); 2043014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat); 2044e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 2045edd03b47SJacob Faibussowitsch PETSC_EXTERN PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatConvert()", ) PetscErrorCode MatISGetMPIXAIJ(Mat, MatReuse, Mat *); 20461f4e1ec7SBarry Smith 2047d9274352SBarry Smith /*S 2048d9274352SBarry Smith MatNullSpace - Object that removes a null space from a vector, i.e. 2049cb6b9846SMatthew Knepley orthogonalizes the vector to a subspace 2050d9274352SBarry Smith 2051f7a9e4ceSBarry Smith Level: advanced 2052d9274352SBarry Smith 20531cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()` 2054d9274352SBarry Smith S*/ 205574637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace; 2056d9274352SBarry Smith 2057014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *); 2058014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *); 2059014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *); 2060d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec); 2061014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *); 20625fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *); 20635fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace); 2064014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace); 2065014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace); 2066014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *); 2067014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *); 2068014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer); 2069014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **); 2070014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *); 207174637425SBarry Smith 2072014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS); 2073014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal); 2074014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *); 20753f1d51d7SBarry Smith 2076014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *); 2077014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *); 2078014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *); 2079c4f061fbSSatish Balay 20800bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *); 20810bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *); 20820bacdadaSStefano Zampini 2083edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperator()", ) static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B) 2084d71ae5a4SJacob Faibussowitsch { 2085f22e26b7SPierre Jolivet return MatComputeOperator(A, PETSC_NULLPTR, B); 20869371c9d4SSatish Balay } 2087edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperatorTranspose()", ) static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B) 2088d71ae5a4SJacob Faibussowitsch { 2089f22e26b7SPierre Jolivet return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B); 20909371c9d4SSatish Balay } 2091b0a32e0cSBarry Smith 209249bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *); 209349bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *); 2094a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **); 2095a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2096a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **); 2097a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **); 2098a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **); 2099a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2100a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **); 2101a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **); 2102dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat); 2103dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]); 2104dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]); 2105910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *); 210649bd79ccSDebojyoti Ghosh 2107014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec); 210804f1ad80SBarry Smith 21094bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDInitializePackage(void); 21104bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDFinalizePackage(void); 21114bf303faSJacob Faibussowitsch 2112014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2113014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec); 2114014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *); 2115014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *)); 2116014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec)); 2117014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt); 2118014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat); 2119014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal); 2120014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt); 2121014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *); 2122014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]); 2123014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *); 2124014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *); 2125e884886fSBarry Smith 21266370053bSBarry Smith /*S 21276370053bSBarry Smith MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free 21286370053bSBarry Smith Jacobian vector products 2129e884886fSBarry Smith 21302ef1f0ffSBarry Smith Level: developer 21312ef1f0ffSBarry Smith 213295452b02SPatrick Sanan Notes: 213387497f52SBarry Smith `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure 21346370053bSBarry Smith 21352ef1f0ffSBarry Smith MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure 21366370053bSBarry Smith 21372ef1f0ffSBarry Smith This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator` 21386370053bSBarry Smith 21391cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`, 21402ef1f0ffSBarry Smith `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator` 21416370053bSBarry Smith S*/ 2142e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD; 2143e884886fSBarry Smith 214476bdecfbSBarry Smith /*J 21452ef1f0ffSBarry Smith MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function 2146e884886fSBarry Smith 214716a05f60SBarry Smith Values: 2148af27ebaaSBarry Smith + `MATMFFD_DS` - an algorithm described by Dennis and Schnabel {cite}`dennis:83` 2149af27ebaaSBarry Smith - `MATMFFD_WP` - the Walker-Pernice {cite}`pw98` strategy. 215016a05f60SBarry Smith 2151e884886fSBarry Smith Level: beginner 2152e884886fSBarry Smith 21531cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()` 215476bdecfbSBarry Smith J*/ 215519fd82e9SBarry Smith typedef const char *MatMFFDType; 2156e884886fSBarry Smith #define MATMFFD_DS "ds" 2157e884886fSBarry Smith #define MATMFFD_WP "wp" 2158e884886fSBarry Smith 215919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType); 2160bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD)); 2161e884886fSBarry Smith 2162014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal); 2163014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool); 2164e884886fSBarry Smith 216561ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType); 216661ab5df0SBarry Smith 2167014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *); 2168014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *); 21697dbadf16SMatthew Knepley 217053022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS 217153022affSStefano Zampini PETSC_EXTERN_TYPEDEF typedef PetscScalar (*MatH2OpusKernel)(PetscInt, PetscReal[], PetscReal[], void *); 217253022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernel, void *, PetscReal, PetscInt, PetscInt, Mat *); 217353022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *); 217453022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal); 217553022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat); 217653022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal); 217753022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool); 217853022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *); 217953022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *); 218053022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *); 2181300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar); 2182a0d2e7d8SStefano Zampini #endif 2183a0d2e7d8SStefano Zampini 2184c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL 218598e73e17SPierre Jolivet PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatHtoolKernel)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *); 2186c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernel, void *, Mat *); 2187c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernel, void *); 218898e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *); 218998e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *); 219098e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool); 21912ef1f0ffSBarry Smith 2192c7a4214aSPierre Jolivet /*E 219387497f52SBarry Smith MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL` 2194c7a4214aSPierre Jolivet 2195c7a4214aSPierre Jolivet Values: 219687497f52SBarry Smith + `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation 219787497f52SBarry Smith . `MAT_HTOOL_COMPRESSOR_FULL_ACA` - full adaptive cross approximation 219887497f52SBarry Smith - `MAT_HTOOL_COMPRESSOR_SVD` - singular value decomposition 2199c7a4214aSPierre Jolivet 220016a05f60SBarry Smith Level: intermediate 220116a05f60SBarry Smith 22021cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType` 2203c7a4214aSPierre Jolivet E*/ 22049371c9d4SSatish Balay typedef enum { 22059371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA, 22069371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_FULL_ACA, 22079371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_SVD 22089371c9d4SSatish Balay } MatHtoolCompressorType; 22092ef1f0ffSBarry Smith 221098e73e17SPierre Jolivet /*E 221187497f52SBarry Smith MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL` 221298e73e17SPierre Jolivet 221398e73e17SPierre Jolivet Values: 221487497f52SBarry Smith + `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default) - axis computed via principle component analysis, split uniformly 221587497f52SBarry Smith . `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC` - axis computed via principle component analysis, split barycentrically 221687497f52SBarry Smith . `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR` - axis along the largest extent of the bounding box, split uniformly 221787497f52SBarry Smith - `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically 221898e73e17SPierre Jolivet 221916a05f60SBarry Smith Level: intermediate 222016a05f60SBarry Smith 22212ef1f0ffSBarry Smith Note: 22222ef1f0ffSBarry Smith Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types 222398e73e17SPierre Jolivet 22241cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType` 222598e73e17SPierre Jolivet E*/ 22269371c9d4SSatish Balay typedef enum { 22279371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_PCA_REGULAR, 22289371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC, 22299371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR, 22309371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC 22319371c9d4SSatish Balay } MatHtoolClusteringType; 2232c7a4214aSPierre Jolivet #endif 2233c7a4214aSPierre Jolivet 223497969023SHong Zhang #ifdef PETSC_HAVE_MUMPS 2235014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt); 2236bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *); 2237b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal); 2238bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *); 2239bc6112feSHong Zhang 2240ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *); 2241ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *); 2242ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *); 2243ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *); 22445c0bae8cSAshish Patel PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **); 224589a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat); 22460e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat); 224797969023SHong Zhang #endif 224823a5497aSJed Brown 2249b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO 2250d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt); 2251b500a6b7SJose David Bermeol #endif 2252b500a6b7SJose David Bermeol 2253d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO 2254d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt); 2255d305a81bSVasiliy Kozyrev #endif 2256d305a81bSVasiliy Kozyrev 2257d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU 2258014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal); 2259d954db57SHong Zhang #endif 2260d954db57SHong Zhang 2261fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST 2262fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *); 2263fb785984SHong Zhang #endif 2264fb785984SHong Zhang 2265575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK 2266542aee0fSPieter Ghysels /*E 226729e0a805SPieter Ghysels MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK` 2268542aee0fSPieter Ghysels 22692ef1f0ffSBarry Smith Values: 22702ef1f0ffSBarry Smith + `MAT_STRUMPACK_NATURAL` - use the current ordering 22712ef1f0ffSBarry Smith . `MAT_STRUMPACK_METIS` - use MeTis to compute an ordering 22722ef1f0ffSBarry Smith . `MAT_STRUMPACK_PARMETIS` - use ParMeTis to compute an ordering 22732ef1f0ffSBarry Smith . `MAT_STRUMPACK_SCOTCH` - use Scotch to compute an ordering 22742ef1f0ffSBarry Smith . `MAT_STRUMPACK_PTSCOTCH` - use parallel Scotch to compute an ordering 227529e0a805SPieter Ghysels . `MAT_STRUMPACK_RCM` - use an RCM ordering 227629e0a805SPieter Ghysels . `MAT_STRUMPACK_GEOMETRIC` - use a geometric ordering (needs mesh info from user) 227729e0a805SPieter Ghysels . `MAT_STRUMPACK_AMD` - approximate minimum degree 227829e0a805SPieter Ghysels . `MAT_STRUMPACK_MMD` - multiple minimum degree 227929e0a805SPieter Ghysels . `MAT_STRUMPACK_AND` - approximate nested dissection 228029e0a805SPieter Ghysels . `MAT_STRUMPACK_MLF` - minimum local fill 228129e0a805SPieter Ghysels - `MAT_STRUMPACK_SPECTRAL` - spectral nested dissection 22822ef1f0ffSBarry Smith 228316a05f60SBarry Smith Level: intermediate 228416a05f60SBarry Smith 22852ef1f0ffSBarry Smith Developer Note: 22862ef1f0ffSBarry Smith Should be called `MatSTRUMPACKReorderingType` 22872ef1f0ffSBarry Smith 228829e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetReordering()` 2289542aee0fSPieter Ghysels E*/ 22909371c9d4SSatish Balay typedef enum { 229129e0a805SPieter Ghysels MAT_STRUMPACK_NATURAL, 229229e0a805SPieter Ghysels MAT_STRUMPACK_METIS, 229329e0a805SPieter Ghysels MAT_STRUMPACK_PARMETIS, 229429e0a805SPieter Ghysels MAT_STRUMPACK_SCOTCH, 229529e0a805SPieter Ghysels MAT_STRUMPACK_PTSCOTCH, 229629e0a805SPieter Ghysels MAT_STRUMPACK_RCM, 229729e0a805SPieter Ghysels MAT_STRUMPACK_GEOMETRIC, 229829e0a805SPieter Ghysels MAT_STRUMPACK_AMD, 229929e0a805SPieter Ghysels MAT_STRUMPACK_MMD, 230029e0a805SPieter Ghysels MAT_STRUMPACK_AND, 230129e0a805SPieter Ghysels MAT_STRUMPACK_MLF, 230229e0a805SPieter Ghysels MAT_STRUMPACK_SPECTRAL 23039371c9d4SSatish Balay } MatSTRUMPACKReordering; 23042ef1f0ffSBarry Smith 230534f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering); 230629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetReordering(Mat, MatSTRUMPACKReordering *); 230729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricNxyz(Mat, PetscInt, PetscInt, PetscInt); 230829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricComponents(Mat, PetscInt); 230929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricWidth(Mat, PetscInt); 2310575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool); 231129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetColPerm(Mat, PetscBool *); 231229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGPU(Mat, PetscBool); 231329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetGPU(Mat, PetscBool *); 231429e0a805SPieter Ghysels 231529e0a805SPieter Ghysels /*E 231629e0a805SPieter Ghysels MatSTRUMPACKCompressionType - Compression used in the approximate sparse factorization solver `MATSOLVERSTRUMPACK` 231729e0a805SPieter Ghysels 231829e0a805SPieter Ghysels Values: 231929e0a805SPieter Ghysels + `MAT_STRUMPACK_COMPRESSION_TYPE_NONE` - no compression, direct solver 232029e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_HSS` - hierarchically semi-separable 232129e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_BLR` - block low rank 232229e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_HODLR` - hierarchically off-diagonal low rank (requires ButterfyPACK support, configure with --download-butterflypack) 232329e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR` - hybrid of BLR and HODLR (requires ButterfyPACK support, configure with --download-butterflypack) 232429e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR` - hybrid of lossy (ZFP), BLR and HODLR (requires ButterfyPACK and ZFP support, configure with --download-butterflypack --download-zfp) 232529e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS` - lossless compression (requires ZFP support, configure with --download-zfp) 232629e0a805SPieter Ghysels - `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY` - lossy compression (requires ZFP support, configure with --download-zfp) 232729e0a805SPieter Ghysels 232829e0a805SPieter Ghysels Level: intermediate 232929e0a805SPieter Ghysels 233029e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetCompression()` 233129e0a805SPieter Ghysels E*/ 233229e0a805SPieter Ghysels typedef enum { 233329e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_NONE, 233429e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_HSS, 233529e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_BLR, 233629e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_HODLR, 233729e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR, 233829e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR, 233929e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS, 234029e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY 234129e0a805SPieter Ghysels } MatSTRUMPACKCompressionType; 234229e0a805SPieter Ghysels 234329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompression(Mat, MatSTRUMPACKCompressionType); 234429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompression(Mat, MatSTRUMPACKCompressionType *); 234529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompRelTol(Mat, PetscReal); 234629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompRelTol(Mat, PetscReal *); 234729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompAbsTol(Mat, PetscReal); 234829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompAbsTol(Mat, PetscReal *); 234929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompMinSepSize(Mat, PetscInt); 235029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompMinSepSize(Mat, PetscInt *); 235129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLeafSize(Mat, PetscInt); 235229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLeafSize(Mat, PetscInt *); 235329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLossyPrecision(Mat, PetscInt); 235429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLossyPrecision(Mat, PetscInt *); 235529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompButterflyLevels(Mat, PetscInt); 235629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompButterflyLevels(Mat, PetscInt *); 2357575704cbSPieter Ghysels #endif 2358575704cbSPieter Ghysels 2359b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool); 23602216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *); 2361edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 13, 0, "MatBindToCPU()", ) static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg) 2362d71ae5a4SJacob Faibussowitsch { 23639371c9d4SSatish Balay return MatBindToCPU(A, flg); 23649371c9d4SSatish Balay } 236565a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool); 2366e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *); 2367e7e92044SBarry Smith 2368aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA 23693f9c0db1SPaul Mullowney /*E 23702ef1f0ffSBarry Smith MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU) 23712692e278SPaul Mullowney matrices. 2372e057df02SPaul Mullowney 23732ef1f0ffSBarry Smith Values: 237487497f52SBarry Smith + `MAT_CUSPARSE_CSR` - Compressed Sparse Row 237587497f52SBarry Smith . `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later). 237687497f52SBarry Smith - `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later). 2377e057df02SPaul Mullowney 2378e057df02SPaul Mullowney Level: intermediate 2379e057df02SPaul Mullowney 23801cc06b55SBarry Smith .seealso: [](ch_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation` 2381e057df02SPaul Mullowney E*/ 2382e057df02SPaul Mullowney 23839371c9d4SSatish Balay typedef enum { 23849371c9d4SSatish Balay MAT_CUSPARSE_CSR, 23859371c9d4SSatish Balay MAT_CUSPARSE_ELL, 23869371c9d4SSatish Balay MAT_CUSPARSE_HYB 23879371c9d4SSatish Balay } MatCUSPARSEStorageFormat; 2388e057df02SPaul Mullowney 2389e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */ 2390e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[]; 2391e057df02SPaul Mullowney 23923f9c0db1SPaul Mullowney /*E 23932ef1f0ffSBarry Smith MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU) 23942692e278SPaul Mullowney matrices whose operation should use a particular storage format. 2395e057df02SPaul Mullowney 23962ef1f0ffSBarry Smith Values: 23974cf0e950SBarry Smith + `MAT_CUSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()` 23984cf0e950SBarry Smith . `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()` 23994cf0e950SBarry Smith . `MAT_CUSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()` 24002ef1f0ffSBarry Smith - `MAT_CUSPARSE_ALL` - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices 2401e057df02SPaul Mullowney 2402e057df02SPaul Mullowney Level: intermediate 2403e057df02SPaul Mullowney 24041cc06b55SBarry Smith .seealso: [](ch_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat` 2405e057df02SPaul Mullowney E*/ 24069371c9d4SSatish Balay typedef enum { 24079371c9d4SSatish Balay MAT_CUSPARSE_MULT_DIAG, 24089371c9d4SSatish Balay MAT_CUSPARSE_MULT_OFFDIAG, 24099371c9d4SSatish Balay MAT_CUSPARSE_MULT, 24109371c9d4SSatish Balay MAT_CUSPARSE_ALL 24119371c9d4SSatish Balay } MatCUSPARSEFormatOperation; 2412e057df02SPaul Mullowney 241310e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 241410e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2415e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat); 2416365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool); 24175f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 24185f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 24195f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **); 24205f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **); 24215f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **); 24225f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **); 24235f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **); 24245f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **); 2425637a0070SStefano Zampini 2426637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 2427637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 2428637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **); 2429637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **); 2430637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **); 2431637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **); 2432637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **); 2433637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **); 2434637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *); 2435d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *); 2436637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat); 24373d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *); 24382d1451d4SHong Zhang 24392d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 24402d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 24419ae82921SPaul Mullowney #endif 24429ae82921SPaul Mullowney 244347d993e7Ssuyashtn #ifdef PETSC_HAVE_HIP 244447d993e7Ssuyashtn /*E 24452ef1f0ffSBarry Smith MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU) 244647d993e7Ssuyashtn matrices. 244747d993e7Ssuyashtn 24482ef1f0ffSBarry Smith Values: 24492ef1f0ffSBarry Smith + `MAT_HIPSPARSE_CSR` - Compressed Sparse Row 24502ef1f0ffSBarry Smith . `MAT_HIPSPARSE_ELL` - Ellpack 24512ef1f0ffSBarry Smith - `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format 245247d993e7Ssuyashtn 245316a05f60SBarry Smith Level: intermediate 245416a05f60SBarry Smith 24551cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation` 245647d993e7Ssuyashtn E*/ 245747d993e7Ssuyashtn 245847d993e7Ssuyashtn typedef enum { 245947d993e7Ssuyashtn MAT_HIPSPARSE_CSR, 246047d993e7Ssuyashtn MAT_HIPSPARSE_ELL, 246147d993e7Ssuyashtn MAT_HIPSPARSE_HYB 246247d993e7Ssuyashtn } MatHIPSPARSEStorageFormat; 246347d993e7Ssuyashtn 246447d993e7Ssuyashtn /* these will be strings associated with enumerated type defined above */ 246547d993e7Ssuyashtn PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[]; 246647d993e7Ssuyashtn 246747d993e7Ssuyashtn /*E 24682ef1f0ffSBarry Smith MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU) 246947d993e7Ssuyashtn matrices whose operation should use a particular storage format. 247047d993e7Ssuyashtn 24712ef1f0ffSBarry Smith Values: 24722ef1f0ffSBarry Smith + `MAT_HIPSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()` 24734cf0e950SBarry Smith . `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()` 24742ef1f0ffSBarry Smith . `MAT_HIPSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()` 24752ef1f0ffSBarry Smith - `MAT_HIPSPARSE_ALL` - sets the storage format for all HIPSPARSE (GPU) matrices 24762ef1f0ffSBarry Smith 247716a05f60SBarry Smith Level: intermediate 247816a05f60SBarry Smith 24791cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat` 248047d993e7Ssuyashtn E*/ 248147d993e7Ssuyashtn typedef enum { 248247d993e7Ssuyashtn MAT_HIPSPARSE_MULT_DIAG, 248347d993e7Ssuyashtn MAT_HIPSPARSE_MULT_OFFDIAG, 248447d993e7Ssuyashtn MAT_HIPSPARSE_MULT, 248547d993e7Ssuyashtn MAT_HIPSPARSE_ALL 248647d993e7Ssuyashtn } MatHIPSPARSEFormatOperation; 248747d993e7Ssuyashtn 248847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 248947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 249047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat); 249147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool); 249247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 249347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 249447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **); 249547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **); 249647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **); 249747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **); 249847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **); 249947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **); 250047d993e7Ssuyashtn 250147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 250247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 250347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **); 250447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **); 250547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **); 250647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **); 250747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **); 250847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **); 250947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *); 251047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *); 251147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat); 25123d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *); 251347d993e7Ssuyashtn #endif 251447d993e7Ssuyashtn 2515d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL) 2516d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2517d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2518d67ff14aSKarl Rupp #endif 2519d67ff14aSKarl Rupp 25204bf303faSJacob Faibussowitsch #if PetscDefined(HAVE_KOKKOS) 25214bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 25224bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 25234bf303faSJacob Faibussowitsch #endif 25244bf303faSJacob Faibussowitsch 252554efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW) 2526014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec); 2527014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec); 25282a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *); 252954efbe56SHong Zhang #endif 253054efbe56SHong Zhang 2531d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 2532d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2533d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt); 2534d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *); 2535d24d4204SJose E. Roman #endif 2536d24d4204SJose E. Roman 2537014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *); 2538014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *); 2539014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]); 2540014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]); 2541014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***); 2542014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *); 254319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType); 2544014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]); 2545014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat); 2546d8588912SDave May 25472ce66baaSPierre Jolivet PETSC_EXTERN PetscErrorCode MatFilter(Mat, PetscReal, PetscBool, PetscBool); 25482ce66baaSPierre Jolivet PETSC_DEPRECATED_FUNCTION(3, 20, 0, "MatFilter()", ) static inline PetscErrorCode MatChop(Mat A, PetscReal tol) 25492ce66baaSPierre Jolivet { 25502ce66baaSPierre Jolivet return MatFilter(A, tol, PETSC_FALSE, PETSC_FALSE); 25512ce66baaSPierre Jolivet } 2552e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *); 25534325cce7SMatthew G Knepley 2554b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **); 255553dd7562SDmitry Karpeev 2556c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat); 2557c094ef40SMatthew G. Knepley 255802218ef1SBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderMerge(Mat, Mat *); 2559539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *); 25601a2c6b5cSJunchao Zhang 25617ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *); 256272833a62Smarkadams4 2563e02fb3cdSMark Adams PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, PetscInt, PetscInt[], Mat *); 256458c11ad4SPierre Jolivet PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat, PetscBool); 2565ad6ad4e1SHansol Suh 2566d16ceb75SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *); 25673444e80cSBarry Smith 25683444e80cSBarry Smith PETSC_EXTERN PetscErrorCode MatSetHPL(Mat, int); 25693444e80cSBarry Smith #define PETSCBMHPL "hpl" 2570