12eac72dbSBarry Smith /* 22eac72dbSBarry Smith Include file for the matrix component of PETSc 32eac72dbSBarry Smith */ 4a4963045SJacob Faibussowitsch #pragma once 5ac09b921SBarry Smith 62c8e378dSBarry Smith #include <petscvec.h> 72eac72dbSBarry Smith 8ac09b921SBarry Smith /* SUBMANSEC = Mat */ 9ac09b921SBarry Smith 10d9274352SBarry Smith /*S 118f6c3df8SBarry Smith Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without 12af27ebaaSBarry Smith an explicit sparse representation (such as matrix-free operators). Also used to hold representations of graphs 13af27ebaaSBarry Smith for graph operations such as coloring, `MatColoringCreate()` 142eac72dbSBarry Smith 15d91e6319SBarry Smith Level: beginner 16d91e6319SBarry Smith 172ef1f0ffSBarry Smith Note: 181cc06b55SBarry Smith See [](doc_matrix), [](ch_matrices) and `MatType` for available matrix types 192ef1f0ffSBarry Smith 201cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()` 21d9274352SBarry Smith S*/ 22d9274352SBarry Smith typedef struct _p_Mat *Mat; 23d9274352SBarry Smith 2476bdecfbSBarry Smith /*J 250b4b7b1cSBarry Smith MatType - String with the name of a PETSc matrix type. These are all the matrix formats that PETSc provides. 26d9274352SBarry Smith 27d9274352SBarry Smith Level: beginner 28d9274352SBarry Smith 290b4b7b1cSBarry Smith Notes: 302ef1f0ffSBarry Smith [](doc_matrix) for a table of available matrix types 312ef1f0ffSBarry Smith 32ce78bad3SBarry Smith Use `MatSetType()` or the options database keys `-mat_type` or `-dm_mat_type` to set the matrix format to use for a given `Mat` 330b4b7b1cSBarry Smith 341cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()` 3576bdecfbSBarry Smith J*/ 3619fd82e9SBarry Smith typedef const char *MatType; 37273d9f13SBarry Smith #define MATSAME "same" 385a11e1b2SBarry Smith #define MATMAIJ "maij" 39273d9f13SBarry Smith #define MATSEQMAIJ "seqmaij" 40273d9f13SBarry Smith #define MATMPIMAIJ "mpimaij" 4149bd79ccSDebojyoti Ghosh #define MATKAIJ "kaij" 4249bd79ccSDebojyoti Ghosh #define MATSEQKAIJ "seqkaij" 4349bd79ccSDebojyoti Ghosh #define MATMPIKAIJ "mpikaij" 44273d9f13SBarry Smith #define MATIS "is" 455a11e1b2SBarry Smith #define MATAIJ "aij" 46273d9f13SBarry Smith #define MATSEQAIJ "seqaij" 47273d9f13SBarry Smith #define MATMPIAIJ "mpiaij" 485a11e1b2SBarry Smith #define MATAIJCRL "aijcrl" 495a11e1b2SBarry Smith #define MATSEQAIJCRL "seqaijcrl" 505a11e1b2SBarry Smith #define MATMPIAIJCRL "mpiaijcrl" 519ae82921SPaul Mullowney #define MATAIJCUSPARSE "aijcusparse" 529ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE "seqaijcusparse" 539ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE "mpiaijcusparse" 5447d993e7Ssuyashtn #define MATAIJHIPSPARSE "aijhipsparse" 5547d993e7Ssuyashtn #define MATSEQAIJHIPSPARSE "seqaijhipsparse" 5647d993e7Ssuyashtn #define MATMPIAIJHIPSPARSE "mpiaijhipsparse" 578c3ff71bSJunchao Zhang #define MATAIJKOKKOS "aijkokkos" 588c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS "seqaijkokkos" 598c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS "mpiaijkokkos" 60d67ff14aSKarl Rupp #define MATAIJVIENNACL "aijviennacl" 61d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL "seqaijviennacl" 62d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL "mpiaijviennacl" 635a11e1b2SBarry Smith #define MATAIJPERM "aijperm" 645a11e1b2SBarry Smith #define MATSEQAIJPERM "seqaijperm" 655a11e1b2SBarry Smith #define MATMPIAIJPERM "mpiaijperm" 664dfdc2d9SRichard Tran Mills #define MATAIJSELL "aijsell" 674dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL "seqaijsell" 684dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL "mpiaijsell" 694a2a386eSRichard Tran Mills #define MATAIJMKL "aijmkl" 704a2a386eSRichard Tran Mills #define MATSEQAIJMKL "seqaijmkl" 714a2a386eSRichard Tran Mills #define MATMPIAIJMKL "mpiaijmkl" 72b5b72c8aSIrina Sokolova #define MATBAIJMKL "baijmkl" 73b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL "seqbaijmkl" 74b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL "mpibaijmkl" 75273d9f13SBarry Smith #define MATSHELL "shell" 76c1fff1c6SRichard Tran Mills #define MATCENTERING "centering" 775a11e1b2SBarry Smith #define MATDENSE "dense" 78637a0070SStefano Zampini #define MATDENSECUDA "densecuda" 7947d993e7Ssuyashtn #define MATDENSEHIP "densehip" 80209238afSKris Buschelman #define MATSEQDENSE "seqdense" 81bfc799aaSStefano Zampini #define MATSEQDENSECUDA "seqdensecuda" 8247d993e7Ssuyashtn #define MATSEQDENSEHIP "seqdensehip" 83273d9f13SBarry Smith #define MATMPIDENSE "mpidense" 84637a0070SStefano Zampini #define MATMPIDENSECUDA "mpidensecuda" 8547d993e7Ssuyashtn #define MATMPIDENSEHIP "mpidensehip" 86db31f6deSJed Brown #define MATELEMENTAL "elemental" 87d24d4204SJose E. Roman #define MATSCALAPACK "scalapack" 885a11e1b2SBarry Smith #define MATBAIJ "baij" 89273d9f13SBarry Smith #define MATSEQBAIJ "seqbaij" 90273d9f13SBarry Smith #define MATMPIBAIJ "mpibaij" 91273d9f13SBarry Smith #define MATMPIADJ "mpiadj" 925a11e1b2SBarry Smith #define MATSBAIJ "sbaij" 93273d9f13SBarry Smith #define MATSEQSBAIJ "seqsbaij" 94273d9f13SBarry Smith #define MATMPISBAIJ "mpisbaij" 95cebc7f6cSBarry Smith #define MATMFFD "mffd" 96c8a8475eSBarry Smith #define MATNORMAL "normal" 97c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN "normalh" 98ab92ecdeSBarry Smith #define MATLRC "lrc" 992a6744ebSBarry Smith #define MATSCATTER "scatter" 100421e10b8SBarry Smith #define MATBLOCKMAT "blockmat" 101793850ffSBarry Smith #define MATCOMPOSITE "composite" 1021f8c7532SHong Zhang #define MATFFT "fft" 1031f8c7532SHong Zhang #define MATFFTW "fftw" 104e133240eSMatthew G Knepley #define MATSEQCUFFT "seqcufft" 10547d993e7Ssuyashtn #define MATSEQHIPFFT "seqhipfft" 106edd03b47SJacob Faibussowitsch #define MATTRANSPOSEMAT PETSC_DEPRECATED_MACRO(3, 18, 0, "MATTRANSPOSEVIRTUAL", ) "transpose" 107013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL "transpose" 108013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose" 10972ca8751SBarry Smith #define MATSCHURCOMPLEMENT "schurcomplement" 1101d6018f0SLisandro Dalcin #define MATPYTHON "python" 11163c07aadSStefano Zampini #define MATHYPRE "hypre" 112f91d8e95SBarry Smith #define MATHYPRESTRUCT "hyprestruct" 113a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT "hypresstruct" 114ee1cef2cSJed Brown #define MATSUBMATRIX "submatrix" 1152c0dbf93SJed Brown #define MATLOCALREF "localref" 116d8588912SDave May #define MATNEST "nest" 117c094ef40SMatthew G. Knepley #define MATPREALLOCATOR "preallocator" 118d4002b98SHong Zhang #define MATSELL "sell" 119d4002b98SHong Zhang #define MATSEQSELL "seqsell" 120d4002b98SHong Zhang #define MATMPISELL "mpisell" 1212d1451d4SHong Zhang #define MATSELLCUDA "sellcuda" 1222d1451d4SHong Zhang #define MATSEQSELLCUDA "seqsellcuda" 1232d1451d4SHong Zhang #define MATMPISELLCUDA "mpisellcuda" 124773bf0f6SHong Zhang #define MATSELLHIP "sellhip" 125773bf0f6SHong Zhang #define MATSEQSELLHIP "seqsellhip" 126773bf0f6SHong Zhang #define MATMPISELLHIP "mpisellhip" 127a3b2e22bSHong Zhang #define MATDUMMY "dummy" 128cd929ea3SAlp Dener #define MATLMVM "lmvm" 12978e4361aSAlp Dener #define MATLMVMDFP "lmvmdfp" 130bbb72809SHansol Suh #define MATLMVMDDFP "lmvmddfp" 13178e4361aSAlp Dener #define MATLMVMBFGS "lmvmbfgs" 132bbb72809SHansol Suh #define MATLMVMDBFGS "lmvmdbfgs" 133bbb72809SHansol Suh #define MATLMVMDQN "lmvmdqn" 13478e4361aSAlp Dener #define MATLMVMSR1 "lmvmsr1" 135864588a7SAlp Dener #define MATLMVMBROYDEN "lmvmbroyden" 136864588a7SAlp Dener #define MATLMVMBADBROYDEN "lmvmbadbroyden" 137864588a7SAlp Dener #define MATLMVMSYMBROYDEN "lmvmsymbroyden" 138864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN "lmvmsymbadbroyden" 139864588a7SAlp Dener #define MATLMVMDIAGBROYDEN "lmvmdiagbroyden" 1403423f386SBarry Smith #define MATCONSTANTDIAGONAL "constantdiagonal" 141345a4b08SToby Isaac #define MATDIAGONAL "diagonal" 142c7a4214aSPierre Jolivet #define MATHTOOL "htool" 14353022affSStefano Zampini #define MATH2OPUS "h2opus" 144773941d6SBarry Smith 14576bdecfbSBarry Smith /*J 146af27ebaaSBarry Smith MatSolverType - String with the name of a PETSc factorization-based matrix solver type. 1479989ab13SBarry Smith 148c2b89b5dSBarry Smith For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc 1499989ab13SBarry Smith 1509989ab13SBarry Smith Level: beginner 1519989ab13SBarry Smith 1522ef1f0ffSBarry Smith Note: 15316a05f60SBarry Smith `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as 15416a05f60SBarry Smith a ./configure option to install them 155c7ccbb75SBarry Smith 1561cc06b55SBarry Smith .seealso: [](sec_matfactor), [](ch_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()` 15776bdecfbSBarry Smith J*/ 158ea799195SBarry Smith typedef const char *MatSolverType; 1592692d6eeSBarry Smith #define MATSOLVERSUPERLU "superlu" 1602692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST "superlu_dist" 16108f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK "strumpack" 1622692d6eeSBarry Smith #define MATSOLVERUMFPACK "umfpack" 16320db9a53SJed Brown #define MATSOLVERCHOLMOD "cholmod" 164d89f5e7aSBarry Smith #define MATSOLVERKLU "klu" 165d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL "elemental" 166d24d4204SJose E. Roman #define MATSOLVERSCALAPACK "scalapack" 1672692d6eeSBarry Smith #define MATSOLVERESSL "essl" 1682692d6eeSBarry Smith #define MATSOLVERLUSOL "lusol" 1692692d6eeSBarry Smith #define MATSOLVERMUMPS "mumps" 170d615f992SSatish Balay #define MATSOLVERMKL_PARDISO "mkl_pardiso" 171d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO "mkl_cpardiso" 1722692d6eeSBarry Smith #define MATSOLVERPASTIX "pastix" 1732692d6eeSBarry Smith #define MATSOLVERMATLAB "matlab" 1742692d6eeSBarry Smith #define MATSOLVERPETSC "petsc" 1752692d6eeSBarry Smith #define MATSOLVERBAS "bas" 1769ae82921SPaul Mullowney #define MATSOLVERCUSPARSE "cusparse" 177bfc799aaSStefano Zampini #define MATSOLVERCUDA "cuda" 17847d993e7Ssuyashtn #define MATSOLVERHIPSPARSE "hipsparse" 17947d993e7Ssuyashtn #define MATSOLVERHIP "hip" 180930e68a5SMark Adams #define MATSOLVERKOKKOS "kokkos" 181a2fc1e05SToby Isaac #define MATSOLVERSPQR "spqr" 1821dd4f53aSPierre Jolivet #define MATSOLVERHTOOL "htool" 183c0cdd4a1SDahai Guo 184b24902e0SBarry Smith /*E 185b24902e0SBarry Smith MatFactorType - indicates what type of factorization is requested 186b24902e0SBarry Smith 1872ef1f0ffSBarry Smith Values: 1882ef1f0ffSBarry Smith + `MAT_FACTOR_LU` - LU factorization 1892ef1f0ffSBarry Smith . `MAT_FACTOR_CHOLESKY` - Cholesky factorization 1902ef1f0ffSBarry Smith . `MAT_FACTOR_ILU` - ILU factorization 1912ef1f0ffSBarry Smith . `MAT_FACTOR_ICC` - incomplete Cholesky factorization 1922ef1f0ffSBarry Smith . `MAT_FACTOR_ILUDT` - ILU factorization with drop tolerance 1932ef1f0ffSBarry Smith - `MAT_FACTOR_QR` - QR factorization 194b24902e0SBarry Smith 19516a05f60SBarry Smith Level: beginner 19616a05f60SBarry Smith 1971cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()` 198b24902e0SBarry Smith E*/ 1999371c9d4SSatish Balay typedef enum { 2009371c9d4SSatish Balay MAT_FACTOR_NONE, 2019371c9d4SSatish Balay MAT_FACTOR_LU, 2029371c9d4SSatish Balay MAT_FACTOR_CHOLESKY, 2039371c9d4SSatish Balay MAT_FACTOR_ILU, 2049371c9d4SSatish Balay MAT_FACTOR_ICC, 2059371c9d4SSatish Balay MAT_FACTOR_ILUDT, 2069371c9d4SSatish Balay MAT_FACTOR_QR, 2079371c9d4SSatish Balay MAT_FACTOR_NUM_TYPES 2089371c9d4SSatish Balay } MatFactorType; 209014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[]; 210e92e720dSBarry Smith 211ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *); 212ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *); 213f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *); 214edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 15, 0, "MatFactorGetCanUseOrdering()", ) static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b) 215d71ae5a4SJacob Faibussowitsch { 2169371c9d4SSatish Balay return MatFactorGetCanUseOrdering(A, b); 2179371c9d4SSatish Balay } 218ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *); 219014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *); 2207abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType); 221348d23efSPierre Jolivet PETSC_EXTERN_TYPEDEF typedef PetscErrorCode MatSolverFn(Mat, MatFactorType, Mat *); 2228434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatSolverFn *MatSolverFunction; 22307e0ed13SBarry Smith 2248434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFn *); 2258434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFn **); 226edd03b47SJacob Faibussowitsch typedef MatSolverType MatSolverPackage PETSC_DEPRECATED_TYPEDEF(3, 9, 0, "MatSolverType", ); 2278434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeRegister()", ) static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFn *f) 228d71ae5a4SJacob Faibussowitsch { 2299371c9d4SSatish Balay return MatSolverTypeRegister(stype, mtype, ftype, f); 2309371c9d4SSatish Balay } 2318434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeGet()", ) static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFn **f) 232d71ae5a4SJacob Faibussowitsch { 2339371c9d4SSatish Balay return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f); 2349371c9d4SSatish Balay } 2359989ab13SBarry Smith 2364222ddf1SHong Zhang /*E 23795bd0b28SBarry Smith MatProductType - indicates what type of matrix product to compute 2384222ddf1SHong Zhang 2392ef1f0ffSBarry Smith Values: 2402ef1f0ffSBarry Smith + `MATPRODUCT_AB` - product of two matrices 2412ef1f0ffSBarry Smith . `MATPRODUCT_AtB` - product of the transpose of a given matrix with a matrix 2422ef1f0ffSBarry Smith . `MATPRODUCT_ABt` - product of a matrix with the transpose of another given matrix 2432ef1f0ffSBarry Smith . `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself 2442ef1f0ffSBarry Smith . `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix 2452ef1f0ffSBarry Smith - `MATPRODUCT_ABC` - the product of three matrices 2462ef1f0ffSBarry Smith 24716a05f60SBarry Smith Level: beginner 24816a05f60SBarry Smith 2491cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatProductSetType()` 2504222ddf1SHong Zhang E*/ 2519371c9d4SSatish Balay typedef enum { 252ce78bad3SBarry Smith MATPRODUCT_UNSPECIFIED, 2539371c9d4SSatish Balay MATPRODUCT_AB, 2549371c9d4SSatish Balay MATPRODUCT_AtB, 2559371c9d4SSatish Balay MATPRODUCT_ABt, 2569371c9d4SSatish Balay MATPRODUCT_PtAP, 2579371c9d4SSatish Balay MATPRODUCT_RARt, 2589371c9d4SSatish Balay MATPRODUCT_ABC 2599371c9d4SSatish Balay } MatProductType; 260544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[]; 2614222ddf1SHong Zhang 2624222ddf1SHong Zhang /*J 2634222ddf1SHong Zhang MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation 2644222ddf1SHong Zhang 2654222ddf1SHong Zhang Level: beginner 2664222ddf1SHong Zhang 2671cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType` 2684222ddf1SHong Zhang J*/ 2694222ddf1SHong Zhang typedef const char *MatProductAlgorithm; 2703e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT "default" 2713e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED "sorted" 2723e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE "scalable" 2733e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST "scalable_fast" 2743e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP "heap" 2753e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP "btheap" 2763e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED "llcondensed" 2773e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE "rowmerge" 2783e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT "outerproduct" 2793e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB "at*b" 2803e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP "rap" 2813e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE "nonscalable" 2823e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI "seqmpi" 2833e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND "backend" 2843e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING "overlapping" 2853e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED "merged" 2863e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE "allatonce" 2873e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged" 2883e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV "allgatherv" 2893e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC "cyclic" 2903e662e0bSHong Zhang #define MATPRODUCTALGORITHMHYPRE "hypre" 2914222ddf1SHong Zhang 2924222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *); 2934222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat); 2944222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType); 2954222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm); 2968fcac130SJose E. Roman PETSC_EXTERN PetscErrorCode MatProductGetAlgorithm(Mat, MatProductAlgorithm *); 2974222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal); 2984222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat); 2994222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat); 3004222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat); 3014222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat); 3024417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat); 3036718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer); 304c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *); 305c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *); 3064222ddf1SHong Zhang 307c06d978dSMatthew Knepley /* Logging support */ 3080700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */ 309014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID; 310335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID; 311014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID; 312014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID; 313014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID; 314014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID; 315014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID; 316014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID; 317c06d978dSMatthew Knepley 318ceb03754SKris Buschelman /*E 3192ef1f0ffSBarry Smith MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions 320cf37664fSBarry Smith are to be reused to store the new matrix values. 321cf37664fSBarry Smith 3222ef1f0ffSBarry Smith Values: 3232ef1f0ffSBarry Smith + `MAT_INITIAL_MATRIX` - create a new matrix 3242ef1f0ffSBarry Smith . `MAT_REUSE_MATRIX` - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX` 3252ef1f0ffSBarry Smith . `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions) 326768f1002SStefano Zampini - `MAT_IGNORE_MATRIX` - do not create a new matrix or reuse a given matrix, just ignore that matrix argument (not applicable to all functions) 327ceb03754SKris Buschelman 328ceb03754SKris Buschelman Level: beginner 329ceb03754SKris Buschelman 3301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()` 331ceb03754SKris Buschelman E*/ 3329371c9d4SSatish Balay typedef enum { 3339371c9d4SSatish Balay MAT_INITIAL_MATRIX, 3349371c9d4SSatish Balay MAT_REUSE_MATRIX, 3359371c9d4SSatish Balay MAT_IGNORE_MATRIX, 3369371c9d4SSatish Balay MAT_INPLACE_MATRIX 3379371c9d4SSatish Balay } MatReuse; 338ceb03754SKris Buschelman 3395494a064SHong Zhang /*E 3402ef1f0ffSBarry Smith MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()` 3412ef1f0ffSBarry Smith include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`. 3425494a064SHong Zhang 3432ef1f0ffSBarry Smith Values: 3442ef1f0ffSBarry Smith + `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values 3452ef1f0ffSBarry Smith - `MAT_GET_VALUES` - copy the matrix values 3462ef1f0ffSBarry Smith 34795bd0b28SBarry Smith Level: developer 34895bd0b28SBarry Smith 3492ef1f0ffSBarry Smith Developer Note: 3502ef1f0ffSBarry Smith Why is not just a boolean used for this information? 3512ef1f0ffSBarry Smith 3521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()` 3535494a064SHong Zhang E*/ 3549371c9d4SSatish Balay typedef enum { 3559371c9d4SSatish Balay MAT_DO_NOT_GET_VALUES, 3569371c9d4SSatish Balay MAT_GET_VALUES 3579371c9d4SSatish Balay } MatCreateSubMatrixOption; 3585494a064SHong Zhang 359607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void); 3604bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatFinalizePackage(void); 361c06d978dSMatthew Knepley 362014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *); 36377433607SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFromOptions(MPI_Comm, const char *, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt); 36519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType); 3660d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *); 3670d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType); 368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat); 369fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]); 370bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat)); 37123bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]); 372014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]); 37326cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]); 37426cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]); 375014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]); 376014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]); 3775d5d24bbSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatGetState(Mat, PetscObjectState *); 37884d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool); 379f69a0ea3SMatthew Knepley 380140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList; 381140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList; 382140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList; 38328988994SBarry Smith 3843b224e63SBarry Smith /*E 385aa6c7ce3SBarry Smith MatStructure - Indicates if two matrices have the same nonzero structure 3863b224e63SBarry Smith 3872ef1f0ffSBarry Smith Values: 3882ef1f0ffSBarry Smith + `SAME_NONZERO_PATTERN` - the two matrices have identical nonzero patterns 3892ef1f0ffSBarry Smith . `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns 3902ef1f0ffSBarry Smith . `SUBSET_NONZERO_PATTERN` - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix 3912ef1f0ffSBarry Smith - `UNKNOWN_NONZERO_PATTERN` - there is no known relationship between the nonzero patterns. In this case the implementations 3922ef1f0ffSBarry Smith may try to detect a relationship to optimize the operation 393531d0c6aSBarry Smith 39416a05f60SBarry Smith Level: beginner 39516a05f60SBarry Smith 396af27ebaaSBarry Smith Note: 397af27ebaaSBarry Smith Certain matrix operations (such as `MatAXPY()`) can run much faster if the sparsity pattern of the matrices are the same. But actually determining if 398af27ebaaSBarry Smith the patterns are the same may be costly. This provides a way for users who know something about the sparsity patterns to provide this information 399af27ebaaSBarry Smith to certain PETSc routines. 400af27ebaaSBarry Smith 4011cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()` 4023b224e63SBarry Smith E*/ 4039371c9d4SSatish Balay typedef enum { 4049371c9d4SSatish Balay DIFFERENT_NONZERO_PATTERN, 4059371c9d4SSatish Balay SUBSET_NONZERO_PATTERN, 4069371c9d4SSatish Balay SAME_NONZERO_PATTERN, 4079371c9d4SSatish Balay UNKNOWN_NONZERO_PATTERN 4089371c9d4SSatish Balay } MatStructure; 409d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[]; 4103b224e63SBarry Smith 4119779e05dSSatish Balay #if defined PETSC_HAVE_MKL_SPARSE 412ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 413ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 41480095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 415ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 41680095d54SIrina Sokolova #endif 417cd929ea3SAlp Dener 4184bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 4194bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 4204bf303faSJacob Faibussowitsch 421d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 422d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 423d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]); 424d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 42507e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *); 42607e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *); 42707e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *); 42807e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt); 429b921024eSHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *); 43080095d54SIrina Sokolova 4314bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 4324bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 433fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *); 434fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetSeqSELL(Mat, Mat *, Mat *, const PetscInt *[]); 4354bf303faSJacob Faibussowitsch 436014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 437014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 438014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 439014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 440014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 4418f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 4426a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]); 443014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *); 444c0c276a7Ssdargavi PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, PetscInt, PetscInt, Mat, Mat, PetscInt *, Mat *); 4453b00a383SHong Zhang 446014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 447014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 448014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 4497e8381f9SStefano Zampini 450e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]); 45182a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]); 4527e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode); 453d21a29f3SJed Brown 454014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *); 455014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 456d21a29f3SJed Brown 457014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 458014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 45938f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 460014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 4614cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]); 462dfb205c3SBarry Smith 463014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *); 464c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *); 465014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *); 466c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *); 467986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *); 468267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *); 469bcf2175cSMatthew Knepley PETSC_EXTERN PetscErrorCode MatLRCSetMats(Mat, Mat, Mat, Vec, Mat); 470c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *); 471014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 472014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 473c0cdd4a1SDahai Guo 474014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *); 475014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter); 476014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *); 477014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *); 478014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat); 479014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat); 4809371c9d4SSatish Balay typedef enum { 4819371c9d4SSatish Balay MAT_COMPOSITE_MERGE_RIGHT, 4829371c9d4SSatish Balay MAT_COMPOSITE_MERGE_LEFT 4839371c9d4SSatish Balay } MatCompositeMergeType; 4848c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType); 485014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *); 4860da935d5SPierre Jolivet /*E 4870da935d5SPierre Jolivet MatCompositeType - indicates what type of `MATCOMPOSITE` is used 4880da935d5SPierre Jolivet 4890da935d5SPierre Jolivet Values: 4900da935d5SPierre Jolivet + `MAT_COMPOSITE_ADDITIVE` - sum of matrices (default) 4910da935d5SPierre Jolivet - `MAT_COMPOSITE_MULTIPLICATIVE` - product of matrices 4920da935d5SPierre Jolivet 4930da935d5SPierre Jolivet Level: beginner 4940da935d5SPierre Jolivet 4950da935d5SPierre Jolivet .seealso: [](ch_matrices), `MATCOMPOSITE`, `MatCompositeSetType()`, `MatCompositeGetType()` 4960da935d5SPierre Jolivet E*/ 4979371c9d4SSatish Balay typedef enum { 4989371c9d4SSatish Balay MAT_COMPOSITE_ADDITIVE, 4999371c9d4SSatish Balay MAT_COMPOSITE_MULTIPLICATIVE 5009371c9d4SSatish Balay } MatCompositeType; 501014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType); 5026dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *); 5033b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure); 5043b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *); 5056d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *); 5068b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *); 50703049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *); 5086d7c1e57SBarry Smith 50919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *); 510014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *); 511dedccee8SHong Zhang 512014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *); 5138060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *); 514d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *); 51506511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *); 516fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *); 51765f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *); 51854e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *); 51954e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS); 520014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *); 5213423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *); 522345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatCreateDiagonal(Vec, Mat *); 523345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetDiagonal(Mat, Vec *); 524345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreDiagonal(Mat, Vec *); 525345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetInverseDiagonal(Mat, Vec *); 526345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreInverseDiagonal(Mat, Vec *); 5278a1df862SToby Isaac PETSC_EXTERN PetscErrorCode MatConstantDiagonalGetConstant(Mat, PetscScalar *); 52803db1824SAlex Lindsay PETSC_EXTERN PetscErrorCode MatGetCurrentMemType(Mat, PetscMemType *); 5291472f72bSBarry Smith 530978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE) 531d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 532978814f1SStefano Zampini #endif 533978814f1SStefano Zampini 534014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]); 535ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]); 536cc4c1da9SBarry Smith PETSC_EXTERN PetscErrorCode MatPythonCreate(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const char[], Mat *); 5371d6018f0SLisandro Dalcin 538846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat); 539674b392bSAlexander PETSC_EXTERN PetscErrorCode MatResetHash(Mat); 540014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat); 541014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *); 542e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *); 54321c89e3eSBarry Smith 544014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat); 545014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat); 546014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat); 547014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *); 548014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *); 549713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **); 5500da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *); 551479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat); 5528a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *); 55320c04d79SPierre Jolivet PETSC_EXTERN PetscErrorCode MatComputeVariableBlockEnvelope(Mat); 55499cafbc1SBarry Smith 555014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 5568a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode); 557014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 558014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]); 559014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]); 560014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]); 56173a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom); 56284cb2905SBarry Smith 5632ef4de8bSBarry Smith /*S 5642ef1f0ffSBarry Smith MatStencil - Data structure (C struct) for storing information about rows and 5652ef1f0ffSBarry Smith columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()` 56662ef0227SBarry Smith 5672ef1f0ffSBarry Smith Level: beginner 5682ef1f0ffSBarry Smith 5692ef1f0ffSBarry Smith Notes: 57062ef0227SBarry Smith The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored). 57115229ffcSPierre Jolivet The c represents the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored. 57262ef0227SBarry Smith 573ce78bad3SBarry Smith For stencil access to vectors see `DMDAVecGetArray()` 574be479b30SJed Brown 5752ef1f0ffSBarry Smith For staggered grids, see `DMStagStencil` 5762ef4de8bSBarry Smith 577ce78bad3SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()` 5782ef1f0ffSBarry Smith `DMStagStencil` 5792ef4de8bSBarry Smith S*/ 580435da068SBarry Smith typedef struct { 581c1ac3661SBarry Smith PetscInt k, j, i, c; 582435da068SBarry Smith } MatStencil; 5832ef4de8bSBarry Smith 584014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 585014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 586014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt); 587435da068SBarry Smith 588d91e6319SBarry Smith /*E 5892ef1f0ffSBarry Smith MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use 590d91e6319SBarry Smith 5912ef1f0ffSBarry Smith Values: 5922ef1f0ffSBarry Smith + `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix 5932ef1f0ffSBarry Smith - `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted 5942ef1f0ffSBarry Smith 59516a05f60SBarry Smith Level: beginner 59616a05f60SBarry Smith 5971cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()` 598d91e6319SBarry Smith E*/ 5999371c9d4SSatish Balay typedef enum { 6009371c9d4SSatish Balay MAT_FLUSH_ASSEMBLY = 1, 6019371c9d4SSatish Balay MAT_FINAL_ASSEMBLY = 0 6029371c9d4SSatish Balay } MatAssemblyType; 6034f58015eSStefano Zampini 604014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType); 605014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType); 606014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *); 6074f9c727eSBarry Smith 608d91e6319SBarry Smith /*E 6092ef1f0ffSBarry Smith MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage 610d91e6319SBarry Smith 611d91e6319SBarry Smith Level: beginner 612d91e6319SBarry Smith 6132ef1f0ffSBarry Smith Note: 6142ef1f0ffSBarry Smith See `MatSetOption()` for the use of the options 6152ef1f0ffSBarry Smith 6162ef1f0ffSBarry Smith Developer Note: 61795452b02SPatrick Sanan Entries that are negative need not be called collectively by all processes. 618382164b0SBarry Smith 6191cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetOption()` 620d91e6319SBarry Smith E*/ 6219371c9d4SSatish Balay typedef enum { 6229371c9d4SSatish Balay MAT_OPTION_MIN = -3, 623c5e4d11fSDmitry Karpeev MAT_UNUSED_NONZERO_LOCATION_ERR = -2, 62492d4d306SBarry Smith MAT_ROW_ORIENTED = -1, 625382164b0SBarry Smith MAT_SYMMETRIC = 1, 626382164b0SBarry Smith MAT_STRUCTURALLY_SYMMETRIC = 2, 6278c78258cSHong Zhang MAT_FORCE_DIAGONAL_ENTRIES = 3, 628382164b0SBarry Smith MAT_IGNORE_OFF_PROC_ENTRIES = 4, 629382164b0SBarry Smith MAT_USE_HASH_TABLE = 5, 630382164b0SBarry Smith MAT_KEEP_NONZERO_PATTERN = 6, 631382164b0SBarry Smith MAT_IGNORE_ZERO_ENTRIES = 7, 632382164b0SBarry Smith MAT_USE_INODES = 8, 633382164b0SBarry Smith MAT_HERMITIAN = 9, 634382164b0SBarry Smith MAT_SYMMETRY_ETERNAL = 10, 635c5e4d11fSDmitry Karpeev MAT_NEW_NONZERO_LOCATION_ERR = 11, 636382164b0SBarry Smith MAT_IGNORE_LOWER_TRIANGULAR = 12, 637382164b0SBarry Smith MAT_ERROR_LOWER_TRIANGULAR = 13, 638382164b0SBarry Smith MAT_GETROW_UPPERTRIANGULAR = 14, 639382164b0SBarry Smith MAT_SPD = 15, 64092d4d306SBarry Smith MAT_NO_OFF_PROC_ZERO_ROWS = 16, 64192d4d306SBarry Smith MAT_NO_OFF_PROC_ENTRIES = 17, 64292d4d306SBarry Smith MAT_NEW_NONZERO_LOCATIONS = 18, 643c5e4d11fSDmitry Karpeev MAT_NEW_NONZERO_ALLOCATION_ERR = 19, 644c5e4d11fSDmitry Karpeev MAT_SUBSET_OFF_PROC_ENTRIES = 20, 645c10200c1SHong Zhang MAT_SUBMAT_SINGLEIS = 21, 646957cac9fSHong Zhang MAT_STRUCTURE_ONLY = 22, 647071fcb05SBarry Smith MAT_SORTED_FULL = 23, 6481a2c6b5cSJunchao Zhang MAT_FORM_EXPLICIT_TRANSPOSE = 24, 649b94d7dedSBarry Smith MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25, 650b94d7dedSBarry Smith MAT_SPD_ETERNAL = 26, 6519371c9d4SSatish Balay MAT_OPTION_MAX = 27 6529371c9d4SSatish Balay } MatOption; 653e057df02SPaul Mullowney 6540f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions; 655014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOption(Mat, MatOption, PetscBool); 6567d68702bSBarry Smith PETSC_EXTERN PetscErrorCode MatGetOption(Mat, MatOption, PetscBool *); 657856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode MatPropagateSymmetryOptions(Mat, Mat); 65819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetType(Mat, MatType *); 65984cb2905SBarry Smith 660014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 661014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 662014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 663014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowUpperTriangular(Mat); 664014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowUpperTriangular(Mat); 665014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnVector(Mat, Vec, PetscInt); 6668c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetArray(Mat, PetscScalar *[]); 6678f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]); 668d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]); 6698c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArray(Mat, PetscScalar *[]); 6708f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]); 671d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]); 67221e72a00SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *); 673bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 6744099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetType(Mat, MatType); 675ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatSeqAIJKron(Mat, Mat, MatReuse, Mat *); 676388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *)); 6774099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList; 678cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJGetArray(Mat, PetscScalar *[]); 679cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJRestoreArray(Mat, PetscScalar *[]); 6808397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJGetArray(Mat, PetscScalar *[]); 6818397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]); 6828c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArray(Mat, PetscScalar *[]); 6838c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArray(Mat, PetscScalar *[]); 684d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDensePlaceArray(Mat, const PetscScalar[]); 685d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseReplaceArray(Mat, const PetscScalar[]); 686d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseResetArray(Mat); 6878572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArrayRead(Mat, const PetscScalar *[]); 6888572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayRead(Mat, const PetscScalar *[]); 6896947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetArrayWrite(Mat, PetscScalar *[]); 6906947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWrite(Mat, PetscScalar *[]); 691cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *); 692cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]); 693cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *); 694cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]); 695cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *); 696cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]); 697014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSize(Mat, PetscInt *); 698014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSize(Mat, PetscInt); 699014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSizes(Mat, PetscInt *, PetscInt *); 700014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizes(Mat, PetscInt, PetscInt); 70133d57670SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizesFromMats(Mat, Mat, Mat); 7026e25ca73SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVariableBlockSizes(Mat, PetscInt, const PetscInt[]); 7036e25ca73SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt *[]); 704d7ff4d9fSStefano Zampini PETSC_EXTERN PetscErrorCode MatSelectVariableBlockSizes(Mat, Mat, IS); 7050da83c2eSBarry Smith 70686aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]); 70786aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]); 7086947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *); 7096947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *); 7106947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *); 7116947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *); 7126947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *); 7136947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *); 714a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 7155ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *); 7161620fd73SBarry Smith 717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec); 718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec); 719014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec); 720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec); 721014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec); 722014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *); 723014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *); 724014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec); 725014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec); 726014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat); 727bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat); 728eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat); 729f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec); 730f5edf698SHong Zhang 731d91e6319SBarry Smith /*E 732d91e6319SBarry Smith MatDuplicateOption - Indicates if a duplicated sparse matrix should have 733d91e6319SBarry Smith its numerical values copied over or just its nonzero structure. 734d91e6319SBarry Smith 7352ef1f0ffSBarry Smith Values: 7362ef1f0ffSBarry Smith + `MAT_DO_NOT_COPY_VALUES` - Create a matrix using the same nonzero pattern as the original matrix, 7372ef1f0ffSBarry Smith with zeros for the numerical values 7382ef1f0ffSBarry Smith . `MAT_COPY_VALUES` - Create a matrix with the same nonzero pattern as the original matrix 7392ef1f0ffSBarry Smith and with the same numerical values. 7402ef1f0ffSBarry Smith - `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix 7412ef1f0ffSBarry Smith and does not copy it, using zeros for the numerical values. The parent and 7422ef1f0ffSBarry Smith child matrices will share their index (i and j) arrays, and you cannot 7432ef1f0ffSBarry Smith insert new nonzero entries into either matrix 7440018da39SRichard Tran Mills 74516a05f60SBarry Smith Level: beginner 74616a05f60SBarry Smith 74787497f52SBarry Smith Note: 74887497f52SBarry Smith Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in 74987497f52SBarry Smith this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified. 75070dcbbb9SBarry Smith 7511cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicate()` 752d91e6319SBarry Smith E*/ 7539371c9d4SSatish Balay typedef enum { 7549371c9d4SSatish Balay MAT_DO_NOT_COPY_VALUES, 7559371c9d4SSatish Balay MAT_COPY_VALUES, 7569371c9d4SSatish Balay MAT_SHARE_NONZERO_PATTERN 7579371c9d4SSatish Balay } MatDuplicateOption; 7582e8a6d31SBarry Smith 75919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *); 760014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *); 76194a9d846SBarry Smith 762014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure); 763014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer); 764014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *); 765014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *); 766014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *); 767014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *); 768014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *); 769b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *); 770b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *); 771014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer); 7727b80b807SBarry Smith 7731a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7741a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7751a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7761a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 777d4fbbf0eSBarry Smith 778d91e6319SBarry Smith /*S 77987497f52SBarry Smith MatInfo - Context of matrix information, used with `MatGetInfo()` 780d91e6319SBarry Smith 781d91e6319SBarry Smith Level: intermediate 782d91e6319SBarry Smith 7832ef1f0ffSBarry Smith Fortran Note: 784687234bfSJose E. Roman `MatInfo` is a derived type, use e.g. `matinfo%nz_allocated` to access its components. 7852ef1f0ffSBarry Smith 7861cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetInfo()`, `MatInfoType` 787d91e6319SBarry Smith S*/ 7884e220ebcSLois Curfman McInnes typedef struct { 789b0a32e0cSBarry Smith PetscLogDouble block_size; /* block size */ 790b0a32e0cSBarry Smith PetscLogDouble nz_allocated, nz_used, nz_unneeded; /* number of nonzeros */ 791b0a32e0cSBarry Smith PetscLogDouble memory; /* memory allocated */ 792b0a32e0cSBarry Smith PetscLogDouble assemblies; /* number of matrix assemblies called */ 793b0a32e0cSBarry Smith PetscLogDouble mallocs; /* number of mallocs during MatSetValues() */ 794b0a32e0cSBarry Smith PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */ 795b0a32e0cSBarry Smith PetscLogDouble factor_mallocs; /* number of mallocs during factorization */ 7964e220ebcSLois Curfman McInnes } MatInfo; 7974e220ebcSLois Curfman McInnes 798d9274352SBarry Smith /*E 799d9274352SBarry Smith MatInfoType - Indicates if you want information about the local part of the matrix, 800d9274352SBarry Smith the entire parallel matrix or the maximum over all the local parts. 801d9274352SBarry Smith 8022ef1f0ffSBarry Smith Values: 8032ef1f0ffSBarry Smith + `MAT_LOCAL` - values for each MPI process part of the matrix 8042ef1f0ffSBarry Smith . `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes 8052ef1f0ffSBarry Smith - `MAT_GLOBAL_SUM` - sum of each value over all MPI processes 806d9274352SBarry Smith 80716a05f60SBarry Smith Level: beginner 80816a05f60SBarry Smith 8091cc06b55SBarry Smith .seealso: [](ch_matrices), `MatGetInfo()`, `MatInfo` 810d9274352SBarry Smith E*/ 8119371c9d4SSatish Balay typedef enum { 8129371c9d4SSatish Balay MAT_LOCAL = 1, 8139371c9d4SSatish Balay MAT_GLOBAL_MAX = 2, 8149371c9d4SSatish Balay MAT_GLOBAL_SUM = 3 8159371c9d4SSatish Balay } MatInfoType; 816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *); 817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec); 818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]); 819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]); 820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]); 821eede4a3fSMark Adams PETSC_EXTERN PetscErrorCode MatGetRowSumAbs(Mat, Vec); 822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]); 823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec); 824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *); 8257fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *); 8267fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat); 827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *); 828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *); 829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec); 830014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode); 831a52676ecSHong Zhang 832014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *); 833014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *); 834014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *); 835014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 836014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 837e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 838e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 839a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 840a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 841cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 8424222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 843447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 84486919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *); 8457b80b807SBarry Smith 846014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *); 847014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *); 848857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *); 849857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *); 850857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *); 851857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *); 852857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *); 853857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *); 854857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *); 855014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat); 8561b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat); 857014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 858014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec); 859014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 860014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 861014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 862014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec); 8637b80b807SBarry Smith 864014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *); 865014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *); 866014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *); 867014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **); 868014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *); 869014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **); 870566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *); 8715ef9f2a5SBarry Smith 8727dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 873edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrices()", ) static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 874d71ae5a4SJacob Faibussowitsch { 8759371c9d4SSatish Balay return MatCreateSubMatrices(mat, n, irow, icol, scall, submat); 8769371c9d4SSatish Balay } 8777dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 878edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatricesMPI()", ) static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 879d71ae5a4SJacob Faibussowitsch { 8809371c9d4SSatish Balay return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat); 8819371c9d4SSatish Balay } 882014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]); 883df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]); 8847dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *); 885edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrix()", ) static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat) 886d71ae5a4SJacob Faibussowitsch { 8879371c9d4SSatish Balay return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat); 8889371c9d4SSatish Balay } 889014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *); 890014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *); 891014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *); 892014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *); 8937b80b807SBarry Smith 894014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *); 895014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *); 896014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat); 897014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *); 8988a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *); 899014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *); 900ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *); 901f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *); 902014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *); 903014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]); 9048efafbd8SBarry Smith 905014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt); 906ce78bad3SBarry Smith PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat, PetscInt, IS[], PetscInt); 907d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool); 9087b80b807SBarry Smith 909014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 91022440eb1SKris Buschelman 9117bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 9122df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 9137bab7c10SHong Zhang 914014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *); 915014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *); 91622440eb1SKris Buschelman 917014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 918014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *); 919bc011b1eSHong Zhang 920014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure); 921014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure); 9221c741599SHong Zhang 923014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar); 924014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar); 9257b80b807SBarry Smith 926014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping); 927014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 928a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *); 92981fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout); 930014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 931014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 932014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 933014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 934e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 935014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 936014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 937052efed2SBarry Smith 938014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt); 939014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *); 94090f02eecSBarry Smith 941014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec); 942014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec); 943014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec); 94430b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *); 94530b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *); 94630b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *); 9472a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *); 948edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 6, 0, "MatCreateVecs()", ) static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y) 949d71ae5a4SJacob Faibussowitsch { 9509371c9d4SSatish Balay return MatCreateVecs(mat, x, y); 9519371c9d4SSatish Balay } 95253cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *); 953014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *); 954014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *); 9553a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *); 9569c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *); 957bd481603SBarry Smith 958fe1fc275SAlexander PETSC_EXTERN PetscErrorCode MatCopyHashToXAIJ(Mat A, Mat B); 959c8d6c325SJunchao Zhang /*@C 9601620fd73SBarry Smith MatSetValue - Set a single entry into a matrix. 9611620fd73SBarry Smith 962e1c5b2e2SJose E. Roman Not Collective 963a9834a7dSSatish Balay 9641620fd73SBarry Smith Input Parameters: 965c8d6c325SJunchao Zhang + mat - the matrix 96616a05f60SBarry Smith . i - the row location of the entry 96716a05f60SBarry Smith . j - the column location of the entry 96816a05f60SBarry Smith . va - the value to insert 96987497f52SBarry Smith - mode - either `INSERT_VALUES` or `ADD_VALUES` 9701620fd73SBarry Smith 9711620fd73SBarry Smith Level: beginner 9721620fd73SBarry Smith 97395bd0b28SBarry Smith Notes: 97495bd0b28SBarry Smith This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()` 97595bd0b28SBarry Smith MUST be called after all calls to `MatSetValue()` have been completed. 97695bd0b28SBarry Smith 9772ef1f0ffSBarry Smith For efficiency one should use `MatSetValues()` and set several values simultaneously. 9782ef1f0ffSBarry Smith 979b43fc34aSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `InsertMode`, `MatGetValue()`, `MatSetValues()`, 9802ef1f0ffSBarry Smith `MatSetValueLocal()`, `MatSetValuesLocal()` 981c8d6c325SJunchao Zhang @*/ 982c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValue(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 983d71ae5a4SJacob Faibussowitsch { 984c8d6c325SJunchao Zhang return MatSetValues(mat, 1, &i, 1, &j, &va, mode); 9859371c9d4SSatish Balay } 9861620fd73SBarry Smith 987e5e5a7b5SPatrick Sanan /*@C 988e5e5a7b5SPatrick Sanan MatGetValue - Gets a single value from a matrix 9891620fd73SBarry Smith 990e5e5a7b5SPatrick Sanan Not Collective; can only return a value owned by the given process 991e5e5a7b5SPatrick Sanan 992e5e5a7b5SPatrick Sanan Input Parameters: 993e5e5a7b5SPatrick Sanan + mat - the matrix 994e5e5a7b5SPatrick Sanan . row - the row location of the entry 995e5e5a7b5SPatrick Sanan - col - the column location of the entry 996e5e5a7b5SPatrick Sanan 997e5e5a7b5SPatrick Sanan Output Parameter: 998e5e5a7b5SPatrick Sanan . va - the value 999e5e5a7b5SPatrick Sanan 10002ef1f0ffSBarry Smith Level: advanced 10012ef1f0ffSBarry Smith 1002e5e5a7b5SPatrick Sanan Notes: 1003b43fc34aSPierre Jolivet The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd()` before this call 10042ef1f0ffSBarry Smith 100587497f52SBarry Smith For efficiency one should use `MatGetValues()` and get several values simultaneously. 1006e5e5a7b5SPatrick Sanan 100787497f52SBarry Smith See notes for `MatGetValues()`. 1008e5e5a7b5SPatrick Sanan 1009bfe80ac4SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValue()`, `MatGetValuesLocal()`, `MatGetValues()` 1010e5e5a7b5SPatrick Sanan @*/ 1011d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va) 1012d71ae5a4SJacob Faibussowitsch { 10139371c9d4SSatish Balay return MatGetValues(mat, 1, &row, 1, &col, va); 10149371c9d4SSatish Balay } 1015e5e5a7b5SPatrick Sanan 1016c8d6c325SJunchao Zhang /*@C 10172ef1f0ffSBarry Smith MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes. 1018e5e5a7b5SPatrick Sanan 1019e5e5a7b5SPatrick Sanan Not Collective 1020e5e5a7b5SPatrick Sanan 1021e5e5a7b5SPatrick Sanan Input Parameters: 1022c8d6c325SJunchao Zhang + mat - the matrix 102316a05f60SBarry Smith . i - the row location of the entry 102416a05f60SBarry Smith . j - the column location of the entry 102516a05f60SBarry Smith . va - the value to insert 102687497f52SBarry Smith - mode - either `INSERT_VALUES` or `ADD_VALUES` 1027e5e5a7b5SPatrick Sanan 10282ef1f0ffSBarry Smith Level: intermediate 10292ef1f0ffSBarry Smith 1030e5e5a7b5SPatrick Sanan Notes: 103187497f52SBarry Smith For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously. 1032e5e5a7b5SPatrick Sanan 103387497f52SBarry Smith See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used. 1034e5e5a7b5SPatrick Sanan 10351cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSetValue()`, `MatSetValuesLocal()` 1036c8d6c325SJunchao Zhang @*/ 1037c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValueLocal(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 1038d71ae5a4SJacob Faibussowitsch { 1039c8d6c325SJunchao Zhang return MatSetValuesLocal(mat, 1, &i, 1, &j, &va, mode); 10409371c9d4SSatish Balay } 10411620fd73SBarry Smith 10421620fd73SBarry Smith /*MC 1043d0609cedSBarry Smith MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per 1044bd481603SBarry Smith row in a matrix providing the data that one can use to correctly preallocate the matrix. 1045bd481603SBarry Smith 1046bd481603SBarry Smith Synopsis: 1047aaa7dc30SBarry Smith #include <petscmat.h> 1048d0609cedSBarry Smith PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz) 1049bd481603SBarry Smith 1050d083f849SBarry Smith Collective 1051bd481603SBarry Smith 1052bd481603SBarry Smith Input Parameters: 1053bd481603SBarry Smith + comm - the communicator that will share the eventually allocated matrix 1054859fcb39SBarry Smith . nrows - the number of LOCAL rows in the matrix 1055859fcb39SBarry Smith - ncols - the number of LOCAL columns in the matrix 1056bd481603SBarry Smith 1057bd481603SBarry Smith Output Parameters: 1058bd481603SBarry Smith + dnz - the array that will be passed to the matrix preallocation routines 1059a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1060bd481603SBarry Smith 10612ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1062bd481603SBarry Smith 1063bd481603SBarry Smith Notes: 10642ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 10652ef1f0ffSBarry Smith the use of this routine 10662ef1f0ffSBarry Smith 1067d0609cedSBarry Smith This is a macro that handles its own error checking, it does not return an error code. 1068d0609cedSBarry Smith 10692ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1070bd481603SBarry Smith 10712ef1f0ffSBarry Smith Developer Note: 1072af27ebaaSBarry Smith This is a MACRO, not a function, because it has a leading { that is closed by `PetscPreallocateFinalize()`. 1073bd481603SBarry Smith 10741cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1075db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 1076bd481603SBarry Smith M*/ 10779371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \ 10789371c9d4SSatish Balay do { \ 10793ba16761SJacob Faibussowitsch PetscInt __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \ 10803ba16761SJacob Faibussowitsch PetscInt PETSC_UNUSED __start; \ 10819566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \ 10829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \ 10839371c9d4SSatish Balay __start = __end - __ncols; \ 10849371c9d4SSatish Balay (void)__start; \ 10859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \ 10865f80ce2aSJacob Faibussowitsch __rstart -= __nrows 10877c922b88SBarry Smith 1088edd03b47SJacob Faibussowitsch #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateBegin()", ) MatPreallocateBegin(__VA_ARGS__) 1089d0609cedSBarry Smith 1090bd481603SBarry Smith /*MC 1091bd481603SBarry Smith MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1092bd481603SBarry Smith inserted using a local number of the rows and columns 1093bd481603SBarry Smith 1094bd481603SBarry Smith Synopsis: 1095aaa7dc30SBarry Smith #include <petscmat.h> 1096c1ac3661SBarry Smith PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1097bd481603SBarry Smith 1098bd481603SBarry Smith Not Collective 1099bd481603SBarry Smith 1100bd481603SBarry Smith Input Parameters: 1101784ac674SJed Brown + map - the row mapping from local numbering to global numbering 1102bd481603SBarry Smith . nrows - the number of rows indicated 11031d73ed98SBarry Smith . rows - the indices of the rows 1104784ac674SJed Brown . cmap - the column mapping from local to global numbering 1105bd481603SBarry Smith . ncols - the number of columns in the matrix 1106bd481603SBarry Smith . cols - the columns indicated 1107bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1108a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1109bd481603SBarry Smith 11102ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1111bd481603SBarry Smith 1112bd481603SBarry Smith Notes: 11132ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11142ef1f0ffSBarry Smith the use of this routine 1115bd481603SBarry Smith 11162ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1117bd481603SBarry Smith 11181cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1119db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()` 1120bd481603SBarry Smith M*/ 112194bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 11229371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1123c4f061fbSSatish Balay 1124bd481603SBarry Smith /*MC 1125c1154cd5SBarry Smith MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1126c1154cd5SBarry Smith inserted using a local number of the rows and columns. This version removes any duplicate columns in cols 1127c1154cd5SBarry Smith 1128c1154cd5SBarry Smith Synopsis: 1129c1154cd5SBarry Smith #include <petscmat.h> 1130c1154cd5SBarry Smith PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1131c1154cd5SBarry Smith 1132c1154cd5SBarry Smith Not Collective 1133c1154cd5SBarry Smith 1134c1154cd5SBarry Smith Input Parameters: 1135c1154cd5SBarry Smith + map - the row mapping from local numbering to global numbering 1136c1154cd5SBarry Smith . nrows - the number of rows indicated 1137c1154cd5SBarry Smith . rows - the indices of the rows (these values are mapped to the global values) 1138c1154cd5SBarry Smith . cmap - the column mapping from local to global numbering 1139c1154cd5SBarry Smith . ncols - the number of columns in the matrix (this value will be changed if duplicate columns are found) 1140c1154cd5SBarry Smith . cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed) 1141c1154cd5SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1142a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1143c1154cd5SBarry Smith 11442ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1145c1154cd5SBarry Smith 1146c1154cd5SBarry Smith Notes: 11472ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11482ef1f0ffSBarry Smith the use of this routine 1149c1154cd5SBarry Smith 11502ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1151c1154cd5SBarry Smith 11521cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1153db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1154c1154cd5SBarry Smith M*/ 115594bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 11569371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1157c1154cd5SBarry Smith 1158c1154cd5SBarry Smith /*MC 1159d6e23781SBarry Smith MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1160bd481603SBarry Smith inserted using a local number of the rows and columns 1161bd481603SBarry Smith 1162bd481603SBarry Smith Synopsis: 1163aaa7dc30SBarry Smith #include <petscmat.h> 1164d6e23781SBarry Smith PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1165d6e23781SBarry Smith 1166d6e23781SBarry Smith Not Collective 1167d6e23781SBarry Smith 1168d6e23781SBarry Smith Input Parameters: 1169d6e23781SBarry Smith + map - the row mapping from local numbering to global numbering 1170d6e23781SBarry Smith . nrows - the number of rows indicated 1171d6e23781SBarry Smith . rows - the indices of the rows 1172d6e23781SBarry Smith . cmap - the column mapping from local to global numbering 1173d6e23781SBarry Smith . ncols - the number of columns in the matrix 1174d6e23781SBarry Smith . cols - the columns indicated 1175d6e23781SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1176a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1177d6e23781SBarry Smith 11782ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1179d6e23781SBarry Smith 1180d6e23781SBarry Smith Notes: 11812ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11822ef1f0ffSBarry Smith the use of this routine 1183d6e23781SBarry Smith 11842ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1185d6e23781SBarry Smith 11861cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1187db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()` 1188d6e23781SBarry Smith M*/ 118994bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 11909371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1191d6e23781SBarry Smith 1192d6e23781SBarry Smith /*MC 1193d6e23781SBarry Smith MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1194d6e23781SBarry Smith inserted using a local number of the rows and columns 1195d6e23781SBarry Smith 1196d6e23781SBarry Smith Synopsis: 1197d6e23781SBarry Smith #include <petscmat.h> 1198d6e23781SBarry Smith PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1199bd481603SBarry Smith 1200bd481603SBarry Smith Not Collective 1201bd481603SBarry Smith 1202bd481603SBarry Smith Input Parameters: 1203bd481603SBarry Smith + map - the mapping between local numbering and global numbering 1204bd481603SBarry Smith . nrows - the number of rows indicated 12051d73ed98SBarry Smith . rows - the indices of the rows 1206bd481603SBarry Smith . ncols - the number of columns in the matrix 1207bd481603SBarry Smith . cols - the columns indicated 1208bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1209a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1210bd481603SBarry Smith 12112ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1212bd481603SBarry Smith 1213bd481603SBarry Smith Notes: 12142ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12152ef1f0ffSBarry Smith the use of this routine 1216bd481603SBarry Smith 12172ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1218bd481603SBarry Smith 12191cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()` 1220db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1221bd481603SBarry Smith M*/ 122294bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \ 12239371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));) 1224e83a5d19SLisandro Dalcin 1225bd481603SBarry Smith /*MC 1226bd481603SBarry Smith MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1227bd481603SBarry Smith inserted using a local number of the rows and columns 1228bd481603SBarry Smith 1229bd481603SBarry Smith Synopsis: 1230aaa7dc30SBarry Smith #include <petscmat.h> 1231c1ac3661SBarry Smith PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1232bd481603SBarry Smith 1233bd481603SBarry Smith Not Collective 1234bd481603SBarry Smith 1235bd481603SBarry Smith Input Parameters: 123664075487SBarry Smith + row - the row 1237bd481603SBarry Smith . ncols - the number of columns in the matrix 1238a50f8bf6SHong Zhang - cols - the columns indicated 1239a50f8bf6SHong Zhang 1240a50f8bf6SHong Zhang Output Parameters: 1241a50f8bf6SHong Zhang + dnz - the array that will be passed to the matrix preallocation routines 1242a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1243bd481603SBarry Smith 12442ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1245bd481603SBarry Smith 1246bd481603SBarry Smith Notes: 12472ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12482ef1f0ffSBarry Smith the use of this routine 1249bd481603SBarry Smith 12502ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1251bd481603SBarry Smith 1252af27ebaaSBarry Smith This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin(). 12531620fd73SBarry Smith 12541cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1255db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1256bd481603SBarry Smith M*/ 12579371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \ 12589371c9d4SSatish Balay PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \ 125964075487SBarry Smith if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \ 1260a6042fd4SStefano Zampini else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 12619371c9d4SSatish Balay }) 12627c922b88SBarry Smith 1263bd481603SBarry Smith /*MC 1264d6e23781SBarry Smith MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1265bd481603SBarry Smith inserted using a local number of the rows and columns 1266bd481603SBarry Smith 1267bd481603SBarry Smith Synopsis: 1268aaa7dc30SBarry Smith #include <petscmat.h> 1269d6e23781SBarry Smith PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1270bd481603SBarry Smith 1271bd481603SBarry Smith Not Collective 1272bd481603SBarry Smith 1273bd481603SBarry Smith Input Parameters: 1274bd481603SBarry Smith + nrows - the number of rows indicated 12751d73ed98SBarry Smith . rows - the indices of the rows 1276bd481603SBarry Smith . ncols - the number of columns in the matrix 1277bd481603SBarry Smith . cols - the columns indicated 1278bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1279a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1280bd481603SBarry Smith 12812ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1282bd481603SBarry Smith 1283bd481603SBarry Smith Notes: 12842ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12852ef1f0ffSBarry Smith the use of this routine 1286bd481603SBarry Smith 12872ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1288bd481603SBarry Smith 1289af27ebaaSBarry Smith This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin(). 12901620fd73SBarry Smith 12911cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`, 1292db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1293bd481603SBarry Smith M*/ 129494bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \ 12959371c9d4SSatish Balay PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \ 1296d3d32019SBarry Smith if (cols[__i] >= __end) onz[row - __rstart]++; \ 1297a6042fd4SStefano Zampini else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 12989371c9d4SSatish Balay }) 1299d3d32019SBarry Smith 1300bd481603SBarry Smith /*MC 1301a6042fd4SStefano Zampini MatPreallocateLocation - An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists 130216371a99SBarry Smith 130316371a99SBarry Smith Synopsis: 1304aaa7dc30SBarry Smith #include <petscmat.h> 130516371a99SBarry Smith PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz) 130616371a99SBarry Smith 130716371a99SBarry Smith Not Collective 130816371a99SBarry Smith 130916371a99SBarry Smith Input Parameters: 1310a2b725a8SWilliam Gropp + A - matrix 131116371a99SBarry Smith . row - row where values exist (must be local to this process) 131216371a99SBarry Smith . ncols - number of columns 131316371a99SBarry Smith . cols - columns with nonzeros 131416371a99SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1315a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 131616371a99SBarry Smith 13172ef1f0ffSBarry Smith Level: deprecated (since v3.19) 131816371a99SBarry Smith 131916371a99SBarry Smith Notes: 13202ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 13212ef1f0ffSBarry Smith the use of this routine 132216371a99SBarry Smith 13232ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 132416371a99SBarry Smith 1325af27ebaaSBarry Smith Developer Note: 1326af27ebaaSBarry Smith This is a MACRO, not a function, because it uses a bunch of variables private to the MatPreallocation.... routines. 132716371a99SBarry Smith 13281cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1329db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 133016371a99SBarry Smith M*/ 1331d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz)) 133216371a99SBarry Smith 133316371a99SBarry Smith /*MC 1334d0609cedSBarry Smith MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per 1335bd481603SBarry Smith row in a matrix providing the data that one can use to correctly preallocate the matrix. 1336bd481603SBarry Smith 1337bd481603SBarry Smith Synopsis: 1338aaa7dc30SBarry Smith #include <petscmat.h> 1339d0609cedSBarry Smith PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz) 1340bd481603SBarry Smith 1341d083f849SBarry Smith Collective 1342bd481603SBarry Smith 1343bd481603SBarry Smith Input Parameters: 134416371a99SBarry Smith + dnz - the array that was be passed to the matrix preallocation routines 1345a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1346bd481603SBarry Smith 13472ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1348bd481603SBarry Smith 1349bd481603SBarry Smith Notes: 13502ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 13512ef1f0ffSBarry Smith the use of this routine 1352d0609cedSBarry Smith 13532ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1354bd481603SBarry Smith 13552ef1f0ffSBarry Smith Developer Note: 1356af27ebaaSBarry Smith This is a MACRO, not a function, because it closes the { started in MatPreallocateBegin(). 13571620fd73SBarry Smith 13581cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1359db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 1360bd481603SBarry Smith M*/ 13619371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \ 13629371c9d4SSatish Balay PetscCall(PetscFree2(dnz, onz)); \ 13639371c9d4SSatish Balay } \ 13649371c9d4SSatish Balay while (0) 1365d0609cedSBarry Smith 1366edd03b47SJacob Faibussowitsch #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateEnd()", ) MatPreallocateEnd(__VA_ARGS__) 13677c922b88SBarry Smith 13687b80b807SBarry Smith /* Routines unique to particular data structures */ 1369014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *); 1370698d4c6aSKris Buschelman 1371014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *); 1372014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *); 1373698d4c6aSKris Buschelman 1374014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]); 1375014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]); 1376014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1377014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1378014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1379ce78bad3SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscCount, PetscBool); 13807b80b807SBarry Smith 1381a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4 1382a96a251dSBarry Smith 1383014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1384014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1385014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]); 138619b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt); 1387273d9f13SBarry Smith 1388014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1389014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1390014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1391014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1392014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1393014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1394014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1395014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]); 1396b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *); 1397252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *); 1398014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]); 1399014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]); 14009230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 14019230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 1402014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *); 1403273d9f13SBarry Smith 140449a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *); 1405ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt); 1406edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatDenseSetLDA()", ) static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda) 1407d71ae5a4SJacob Faibussowitsch { 14089371c9d4SSatish Balay return MatDenseSetLDA(A, lda); 14099371c9d4SSatish Balay } 1410014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *); 14111b807ce4Svictorle 1412621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1413621e819fSSatish Balay 1414014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat); 1415014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat); 14162e8a6d31SBarry Smith 1417014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *); 14187cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *); 14197b80b807SBarry Smith /* 14207b80b807SBarry Smith These routines are not usually accessed directly, rather solving is 142194b7f48cSBarry Smith done through the KSP and PC interfaces. 14227b80b807SBarry Smith */ 14237b80b807SBarry Smith 142476bdecfbSBarry Smith /*J 14252ef1f0ffSBarry Smith MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used 14262ef1f0ffSBarry Smith to reduce fill in sparse factorizations. 1427d9274352SBarry Smith 1428d9274352SBarry Smith Level: beginner 1429d9274352SBarry Smith 14302c7c0729SBarry Smith Notes: 143116a05f60SBarry Smith If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one 143216a05f60SBarry Smith of its own. 14332c7c0729SBarry Smith 14342ef1f0ffSBarry Smith There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()` 14352ef1f0ffSBarry Smith 14362ef1f0ffSBarry Smith Developer Note: 14372ef1f0ffSBarry Smith This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning` 14382ef1f0ffSBarry Smith 14391cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`, 14402ef1f0ffSBarry Smith `PCFactorSetOrderingType()` 144176bdecfbSBarry Smith J*/ 144219fd82e9SBarry Smith typedef const char *MatOrderingType; 14432692d6eeSBarry Smith #define MATORDERINGNATURAL "natural" 14442692d6eeSBarry Smith #define MATORDERINGND "nd" 14452692d6eeSBarry Smith #define MATORDERING1WD "1wd" 14462692d6eeSBarry Smith #define MATORDERINGRCM "rcm" 14472692d6eeSBarry Smith #define MATORDERINGQMD "qmd" 14482692d6eeSBarry Smith #define MATORDERINGROWLENGTH "rowlength" 1449510184a7SJed Brown #define MATORDERINGWBM "wbm" 1450fc1bef75SJed Brown #define MATORDERINGSPECTRAL "spectral" 1451312e372aSBarry Smith #define MATORDERINGAMD "amd" /* only works if UMFPACK is installed with PETSc */ 1452048412efSPablo Brubeck #define MATORDERINGMETISND "metisnd" /* only works if METIS is installed with PETSc */ 14539bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */ 14542c7c0729SBarry Smith #define MATORDERINGEXTERNAL "external" /* uses an ordering type internal to the factorization package */ 1455b12f92e5SBarry Smith 145619fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrdering(Mat, MatOrderingType, IS *, IS *); 1457140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrderingList(PetscFunctionList *); 1458bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *)); 1459140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList; 1460d4fbbf0eSBarry Smith 1461013e2dc7SBarry Smith #include "petscmatcoarsen.h" 1462013e2dc7SBarry Smith 1463014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS); 1464fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *); 1465a2ce50c7SBarry Smith 14664ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *); 14674ac6704cSBarry Smith 1468d91e6319SBarry Smith /*S 14692ef1f0ffSBarry Smith MatFactorShiftType - Type of numeric shift used for factorizations 1470d90ac83dSHong Zhang 14712ef1f0ffSBarry Smith Values: 14722ef1f0ffSBarry Smith + `MAT_SHIFT_NONE` - do not shift the matrix diagonal entries 14732ef1f0ffSBarry Smith . `MAT_SHIFT_NONZERO` - shift the entries to be non-zero 14742ef1f0ffSBarry Smith . `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite 14752ef1f0ffSBarry Smith - `MAT_SHIFT_INBLOCKS` - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ` 1476d90ac83dSHong Zhang 14772ef1f0ffSBarry Smith Level: intermediate 14782ef1f0ffSBarry Smith 14791cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()` 1480d90ac83dSHong Zhang S*/ 14819371c9d4SSatish Balay typedef enum { 14829371c9d4SSatish Balay MAT_SHIFT_NONE, 14839371c9d4SSatish Balay MAT_SHIFT_NONZERO, 14849371c9d4SSatish Balay MAT_SHIFT_POSITIVE_DEFINITE, 14859371c9d4SSatish Balay MAT_SHIFT_INBLOCKS 14869371c9d4SSatish Balay } MatFactorShiftType; 14876a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[]; 14885e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[]; 1489d90ac83dSHong Zhang 1490d90ac83dSHong Zhang /*S 1491ec5066bdSBarry Smith MatFactorError - indicates what type of error was generated in a matrix factorization 14929aa7eafdSHong Zhang 14932ef1f0ffSBarry Smith Values: 14942ef1f0ffSBarry Smith + `MAT_FACTOR_NOERROR` - there was no error during the factorization 14952ef1f0ffSBarry Smith . `MAT_FACTOR_STRUCT_ZEROPIVOT` - there was a missing entry in a diagonal location of the matrix 14962ef1f0ffSBarry Smith . `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization 14972ef1f0ffSBarry Smith . `MAT_FACTOR_OUTMEMORY` - the factorization has run out of memory 14982ef1f0ffSBarry Smith - `MAT_FACTOR_OTHER` - some other error has occurred. 14999aa7eafdSHong Zhang 15002ef1f0ffSBarry Smith Level: intermediate 150100e125f8SBarry Smith 15022ef1f0ffSBarry Smith Note: 15032ef1f0ffSBarry Smith When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason` 15042ef1f0ffSBarry Smith 15051cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`, 15062ef1f0ffSBarry Smith `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason` 15079aa7eafdSHong Zhang S*/ 15089371c9d4SSatish Balay typedef enum { 15099371c9d4SSatish Balay MAT_FACTOR_NOERROR, 15109371c9d4SSatish Balay MAT_FACTOR_STRUCT_ZEROPIVOT, 15119371c9d4SSatish Balay MAT_FACTOR_NUMERIC_ZEROPIVOT, 15129371c9d4SSatish Balay MAT_FACTOR_OUTMEMORY, 15139371c9d4SSatish Balay MAT_FACTOR_OTHER 15149371c9d4SSatish Balay } MatFactorError; 15159aa7eafdSHong Zhang 151600e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *); 1517b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat); 15187b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *); 151900e125f8SBarry Smith 15209aa7eafdSHong Zhang /*S 1521422a814eSBarry Smith MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization 1522b00f7748SHong Zhang 1523b00f7748SHong Zhang Level: developer 1524b00f7748SHong Zhang 15252ef1f0ffSBarry Smith Note: 15262ef1f0ffSBarry Smith You can use `MatFactorInfoInitialize()` to set default values. 1527b00f7748SHong Zhang 15282ef1f0ffSBarry Smith Fortran Note: 1529687234bfSJose E. Roman `MatFactorInfo` is a derived type, use e.g. `matfactorinfo%dt` to access its components. 15302ef1f0ffSBarry Smith 15311cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, 15322ef1f0ffSBarry Smith `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()` 1533b00f7748SHong Zhang S*/ 1534b00f7748SHong Zhang typedef struct { 153515e8a5b3SHong Zhang PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */ 153685317021SBarry Smith PetscReal usedt; 153715e8a5b3SHong Zhang PetscReal dt; /* drop tolerance */ 1538b00f7748SHong Zhang PetscReal dtcol; /* tolerance for pivoting */ 153915e8a5b3SHong Zhang PetscReal dtcount; /* maximum nonzeros to be allowed per row */ 154067e28bfeSBarry Smith PetscReal fill; /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */ 1541348344bbSBarry Smith PetscReal levels; /* ICC/ILU(levels) */ 1542ce78bad3SBarry Smith PetscReal pivotinblocks; /* BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 factorization may be faster if do not pivot */ 154315e8a5b3SHong Zhang PetscReal zeropivot; /* pivot is called zero if less than this */ 1544f4db908eSBarry Smith PetscReal shifttype; /* type of shift added to matrix factor to prevent zero pivots */ 1545f4db908eSBarry Smith PetscReal shiftamount; /* how large the shift is */ 1546f82ac72cSJunchao Zhang PetscBool factoronhost; /* do factorization on host instead of device (for device matrix types) */ 1547f82ac72cSJunchao Zhang PetscBool solveonhost; /* do mat solve on host with the factor (for device matrix types) */ 154815e8a5b3SHong Zhang } MatFactorInfo; 1549ffa6d0a5SLois Curfman McInnes 1550014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *); 15519a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *); 15529a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15539a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *); 15549a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *); 15559a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *); 15569a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 15579a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 15589a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15599a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *); 15609a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *); 15613f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *); 15623f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15633f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *); 1564014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *); 1565014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec); 1566014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec); 1567014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec); 1568014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec); 1569014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec); 1570014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec); 1571014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs); 15727c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat); 15737c2f51b8SStefano Zampini 15749371c9d4SSatish Balay typedef enum { 15759371c9d4SSatish Balay MAT_FACTOR_SCHUR_UNFACTORED, 15769371c9d4SSatish Balay MAT_FACTOR_SCHUR_FACTORED, 15779371c9d4SSatish Balay MAT_FACTOR_SCHUR_INVERTED 15789371c9d4SSatish Balay } MatFactorSchurStatus; 15798e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS); 15807c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 15817c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus); 15825a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat); 15837c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 15845a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec); 15855a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec); 15866dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat); 1587bb5a7306SBarry Smith 15888a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat); 1589d91e6319SBarry Smith /*E 1590d91e6319SBarry Smith MatSORType - What type of (S)SOR to perform 1591bb1eb677SSatish Balay 15922ef1f0ffSBarry Smith Values: 15932ef1f0ffSBarry Smith + `SOR_FORWARD_SWEEP` - do a sweep from the first row of the matrix to the last 15942ef1f0ffSBarry Smith . `SOR_BACKWARD_SWEEP` - do a sweep from the last row to the first 15952ef1f0ffSBarry Smith . `SOR_SYMMETRIC_SWEEP` - do a sweep from the first row to the last and then back to the first 1596af27ebaaSBarry Smith . `SOR_LOCAL_FORWARD_SWEEP` - each MPI process does its own forward sweep with no communication 1597af27ebaaSBarry Smith . `SOR_LOCAL_BACKWARD_SWEEP` - each MPI process does its own backward sweep with no communication 1598af27ebaaSBarry Smith . `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI process does its own symmetric sweep with no communication 15992ef1f0ffSBarry Smith . `SOR_ZERO_INITIAL_GUESS` - indicates the initial solution is zero so the sweep can avoid unneeded computation 16002ef1f0ffSBarry Smith . `SOR_EISENSTAT` - apply the Eisentat application of SOR, see `PCEISENSTAT` 16012ef1f0ffSBarry Smith . `SOR_APPLY_UPPER` - multiply by the upper triangular portion of the matrix 16022ef1f0ffSBarry Smith - `SOR_APPLY_LOWER` - multiply by the lower triangular portion of the matrix 16032ef1f0ffSBarry Smith 1604d91e6319SBarry Smith Level: beginner 1605d91e6319SBarry Smith 16062ef1f0ffSBarry Smith Note: 16072ef1f0ffSBarry Smith These may be bitwise ORd together 1608d9274352SBarry Smith 16092ef1f0ffSBarry Smith Developer Note: 16102ef1f0ffSBarry Smith Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below 1611d91e6319SBarry Smith 16121cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSOR()` 1613d91e6319SBarry Smith E*/ 16149371c9d4SSatish Balay typedef enum { 16159371c9d4SSatish Balay SOR_FORWARD_SWEEP = 1, 16169371c9d4SSatish Balay SOR_BACKWARD_SWEEP = 2, 16179371c9d4SSatish Balay SOR_SYMMETRIC_SWEEP = 3, 16189371c9d4SSatish Balay SOR_LOCAL_FORWARD_SWEEP = 4, 16199371c9d4SSatish Balay SOR_LOCAL_BACKWARD_SWEEP = 8, 16209371c9d4SSatish Balay SOR_LOCAL_SYMMETRIC_SWEEP = 12, 16219371c9d4SSatish Balay SOR_ZERO_INITIAL_GUESS = 16, 16229371c9d4SSatish Balay SOR_EISENSTAT = 32, 16239371c9d4SSatish Balay SOR_APPLY_UPPER = 64, 16249371c9d4SSatish Balay SOR_APPLY_LOWER = 128 16259371c9d4SSatish Balay } MatSORType; 1626014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec); 16278ed539a5SBarry Smith 16287086a01eSPeter Brune /*S 16297086a01eSPeter Brune MatColoring - Object for managing the coloring of matrices. 16307086a01eSPeter Brune 16317086a01eSPeter Brune Level: beginner 16327086a01eSPeter Brune 1633ec5066bdSBarry Smith Notes: 163487497f52SBarry Smith Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 163587497f52SBarry Smith matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors). 1636ec5066bdSBarry Smith 163787497f52SBarry Smith Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This 16382ef1f0ffSBarry Smith same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices. 1639ec5066bdSBarry Smith 16401cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`, 16412ef1f0ffSBarry Smith `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`, 16422ef1f0ffSBarry Smith `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen` 16437086a01eSPeter Brune S*/ 1644d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring; 1645d4db15c4SBarry Smith 1646d4db15c4SBarry Smith /*J 1647d4db15c4SBarry Smith MatColoringType - String with the name of a PETSc matrix coloring 1648d9274352SBarry Smith 1649d9274352SBarry Smith Level: beginner 1650d9274352SBarry Smith 16511cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring` 165276bdecfbSBarry Smith J*/ 165319fd82e9SBarry Smith typedef const char *MatColoringType; 16545567d71aSPeter Brune #define MATCOLORINGJP "jp" 1655b9acb617SPeter Brune #define MATCOLORINGPOWER "power" 16562692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural" 16572692d6eeSBarry Smith #define MATCOLORINGSL "sl" 16582692d6eeSBarry Smith #define MATCOLORINGLF "lf" 16592692d6eeSBarry Smith #define MATCOLORINGID "id" 16608121bdceSPeter Brune #define MATCOLORINGGREEDY "greedy" 1661b12f92e5SBarry Smith 16628ac6da0aSPeter Brune /*E 16632ef1f0ffSBarry Smith MatColoringWeightType - Type of weight scheme used for the coloring algorithm 16648ac6da0aSPeter Brune 16652ef1f0ffSBarry Smith Values: 166687497f52SBarry Smith + `MAT_COLORING_RANDOM` - Random weights 166787497f52SBarry Smith . `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering. 166887497f52SBarry Smith - `MAT_COLORING_LF` - Last-first weighting. 16698ac6da0aSPeter Brune 16708ac6da0aSPeter Brune Level: intermediate 16718ac6da0aSPeter Brune 16721cc06b55SBarry Smith .seealso: [](ch_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()` 16738ac6da0aSPeter Brune E*/ 16749371c9d4SSatish Balay typedef enum { 16759371c9d4SSatish Balay MAT_COLORING_WEIGHT_RANDOM, 16769371c9d4SSatish Balay MAT_COLORING_WEIGHT_LEXICAL, 16779371c9d4SSatish Balay MAT_COLORING_WEIGHT_LF, 16789371c9d4SSatish Balay MAT_COLORING_WEIGHT_SL 16799371c9d4SSatish Balay } MatColoringWeightType; 16808ac6da0aSPeter Brune 1681335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *); 1682d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *); 1683335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *); 1684335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer); 1685335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType); 1686335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring); 1687335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt); 1688335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *); 1689335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt); 1690335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *); 1691335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *); 1692335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring)); 1693014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *); 16948ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType); 1695c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *); 16968ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm); 1697bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring); 1698edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatColoringTest()", ) static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring) 1699d71ae5a4SJacob Faibussowitsch { 17009371c9d4SSatish Balay return MatColoringTest(matcoloring, iscoloring); 17019371c9d4SSatish Balay } 1702bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring); 1703639f9d9dSBarry Smith 1704d9274352SBarry Smith /*S 170587497f52SBarry Smith MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring 1706639f9d9dSBarry Smith 1707d9274352SBarry Smith Level: beginner 1708d9274352SBarry Smith 17092ba42892SBarry Smith Options Database Key: 17102ba42892SBarry Smith . -snes_fd_coloring - cause the Jacobian needed by `SNES` to be computed via a use of this object 1711ec5066bdSBarry Smith 17122ba42892SBarry Smith Note: 17132ba42892SBarry Smith This object is created utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()` 17142ef1f0ffSBarry Smith 17151cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()` 1716d9274352SBarry Smith S*/ 1717e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring; 1718639f9d9dSBarry Smith 17192ba42892SBarry Smith /*S 17202ba42892SBarry Smith MatFDColoringFn - Function provided to `MatFDColoringSetFunction()` that computes the function being differenced 17212ba42892SBarry Smith 17222ba42892SBarry Smith Level: advanced 17232ba42892SBarry Smith 17242ba42892SBarry Smith Calling Sequence: 17252ba42892SBarry Smith + snes - either a `SNES` object if used within `SNES` otherwise an unused parameter 17262ba42892SBarry Smith . in - the location where the Jacobian is to be computed 17272ba42892SBarry Smith . out - the location to put the computed function value 17282ba42892SBarry Smith - fctx - the function context passed into `MatFDColoringSetFunction()` 17292ba42892SBarry Smith 17302ba42892SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMFFD()`, `MatMFFDSetFunction()`, `MatMFFDiFn`, `MatMFFDiBaseFn` 17312ba42892SBarry Smith S*/ 1732348d23efSPierre Jolivet PETSC_EXTERN_TYPEDEF typedef PetscErrorCode MatFDColoringFn(void *snes, Vec x, Vec y, void *fctx); 17332ba42892SBarry Smith 1734014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *); 1735014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *); 1736014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer); 17372ba42892SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, MatFDColoringFn *, void *); 17382ba42892SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, MatFDColoringFn **, void **); 1739014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal); 1740014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring); 1741d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *); 1742014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec); 1743edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]); 1744f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring); 1745f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt); 1746bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *); 1747b1683b59SHong Zhang 1748b1683b59SHong Zhang /*S 1749af27ebaaSBarry Smith MatTransposeColoring - Object for computing a sparse matrix product $C = A*B^T$ via coloring 1750b1683b59SHong Zhang 17512ef1f0ffSBarry Smith Level: developer 1752b1683b59SHong Zhang 17531cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()` 1754b1683b59SHong Zhang S*/ 1755b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring; 1756b1683b59SHong Zhang 1757014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *); 1758014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat); 1759014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat); 1760014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *); 1761b1683b59SHong Zhang 1762d9274352SBarry Smith /*S 1763d9274352SBarry Smith MatPartitioning - Object for managing the partitioning of a matrix or graph 1764d9274352SBarry Smith 1765d9274352SBarry Smith Level: beginner 1766d9274352SBarry Smith 176787497f52SBarry Smith Note: 176887497f52SBarry Smith There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations 176987497f52SBarry Smith via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`) 1770ec5066bdSBarry Smith 1771b5e6e808SPierre Jolivet Developer Note: 17722ef1f0ffSBarry Smith It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed 1773ec5066bdSBarry Smith 17741cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`, 17752ef1f0ffSBarry Smith `MatCoarsenType`, `MatCoarsenType` 1776d9274352SBarry Smith S*/ 177791e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning; 1778d9274352SBarry Smith 177976bdecfbSBarry Smith /*J 17808f6c3df8SBarry Smith MatPartitioningType - String with the name of a PETSc matrix partitioning 1781d9274352SBarry Smith 1782d9274352SBarry Smith Level: beginner 17830d04baf8SBarry Smith dm 17841cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`, 17852ef1f0ffSBarry Smith `MatCoarsenType`, `MatCoarsenType` 178676bdecfbSBarry Smith J*/ 178719fd82e9SBarry Smith typedef const char *MatPartitioningType; 17882692d6eeSBarry Smith #define MATPARTITIONINGCURRENT "current" 1789aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE "average" 17902692d6eeSBarry Smith #define MATPARTITIONINGSQUARE "square" 17912692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis" 17922692d6eeSBarry Smith #define MATPARTITIONINGCHACO "chaco" 17932692d6eeSBarry Smith #define MATPARTITIONINGPARTY "party" 179450d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch" 179588d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch" 179671306c60Sjroman 1797014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *); 179819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType); 1799014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt); 1800014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat); 1801252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt); 1802014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]); 1803014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]); 1804ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool); 1805ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *); 1806014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *); 1807fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *); 1808668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS); 1809f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *); 1810014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *); 1811bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning)); 1812014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer); 1813fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]); 1814014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning); 181519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *); 1816ca161407SBarry Smith 1817ce78bad3SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning); 1818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning); 1819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *); 18200752156aSBarry Smith 18219371c9d4SSatish Balay typedef enum { 18229371c9d4SSatish Balay MP_CHACO_MULTILEVEL = 1, 18239371c9d4SSatish Balay MP_CHACO_SPECTRAL = 2, 18249371c9d4SSatish Balay MP_CHACO_LINEAR = 4, 18259371c9d4SSatish Balay MP_CHACO_RANDOM = 5, 18269371c9d4SSatish Balay MP_CHACO_SCATTERED = 6 18279371c9d4SSatish Balay } MPChacoGlobalType; 18286a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[]; 18299371c9d4SSatish Balay typedef enum { 18309371c9d4SSatish Balay MP_CHACO_KERNIGHAN = 1, 18319371c9d4SSatish Balay MP_CHACO_NONE = 2 18329371c9d4SSatish Balay } MPChacoLocalType; 18336a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[]; 18349371c9d4SSatish Balay typedef enum { 18359371c9d4SSatish Balay MP_CHACO_LANCZOS = 0, 18369371c9d4SSatish Balay MP_CHACO_RQI = 1 18379371c9d4SSatish Balay } MPChacoEigenType; 18386a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[]; 1839b6956c12SJose Roman 1840014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType); 1841014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *); 1842014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType); 1843014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *); 1844014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal); 1845014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType); 1846014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *); 1847014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal); 1848014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *); 1849014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt); 1850014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *); 185171306c60Sjroman 185271306c60Sjroman #define MP_PARTY_OPT "opt" 185371306c60Sjroman #define MP_PARTY_LIN "lin" 185471306c60Sjroman #define MP_PARTY_SCA "sca" 185571306c60Sjroman #define MP_PARTY_RAN "ran" 185671306c60Sjroman #define MP_PARTY_GBF "gbf" 185771306c60Sjroman #define MP_PARTY_GCF "gcf" 185871306c60Sjroman #define MP_PARTY_BUB "bub" 185971306c60Sjroman #define MP_PARTY_DEF "def" 1860014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *); 186171306c60Sjroman #define MP_PARTY_HELPFUL_SETS "hs" 186271306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl" 186371306c60Sjroman #define MP_PARTY_NONE "no" 1864014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *); 1865014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal); 1866014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool); 1867014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool); 186871306c60Sjroman 18699371c9d4SSatish Balay typedef enum { 18709371c9d4SSatish Balay MP_PTSCOTCH_DEFAULT, 18719371c9d4SSatish Balay MP_PTSCOTCH_QUALITY, 18729371c9d4SSatish Balay MP_PTSCOTCH_SPEED, 18739371c9d4SSatish Balay MP_PTSCOTCH_BALANCE, 18749371c9d4SSatish Balay MP_PTSCOTCH_SAFETY, 18759371c9d4SSatish Balay MP_PTSCOTCH_SCALABILITY 18769371c9d4SSatish Balay } MPPTScotchStrategyType; 18776a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[]; 1878e0f1cffaSJose Roman 1879014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal); 1880014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *); 1881014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType); 1882014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *); 188371306c60Sjroman 1884b43b03e9SMark F. Adams /* 18856294fa2bSFande Kong * hierarchical partitioning 18866294fa2bSFande Kong */ 18874e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *); 18884e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *); 18894e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt); 18904e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt); 18916294fa2bSFande Kong 1892014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *); 1893591294e4SBarry Smith 18940752156aSBarry Smith /* 18958bb0f5c6SPierre Jolivet If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/petsc4py/PETSc/libpetsc4py.pyx 1896d4fbbf0eSBarry Smith */ 18979371c9d4SSatish Balay typedef enum { 18989371c9d4SSatish Balay MATOP_SET_VALUES = 0, 18991c1c02c0SLois Curfman McInnes MATOP_GET_ROW = 1, 19001c1c02c0SLois Curfman McInnes MATOP_RESTORE_ROW = 2, 19011c1c02c0SLois Curfman McInnes MATOP_MULT = 3, 19021c1c02c0SLois Curfman McInnes MATOP_MULT_ADD = 4, 19037c922b88SBarry Smith MATOP_MULT_TRANSPOSE = 5, 19047c922b88SBarry Smith MATOP_MULT_TRANSPOSE_ADD = 6, 19051c1c02c0SLois Curfman McInnes MATOP_SOLVE = 7, 19061c1c02c0SLois Curfman McInnes MATOP_SOLVE_ADD = 8, 19077c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE = 9, 19087c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE_ADD = 10, 19091c1c02c0SLois Curfman McInnes MATOP_LUFACTOR = 11, 19101c1c02c0SLois Curfman McInnes MATOP_CHOLESKYFACTOR = 12, 1911a714c06dSBarry Smith MATOP_SOR = 13, 19121c1c02c0SLois Curfman McInnes MATOP_TRANSPOSE = 14, 19131c1c02c0SLois Curfman McInnes MATOP_GETINFO = 15, 19141c1c02c0SLois Curfman McInnes MATOP_EQUAL = 16, 19151c1c02c0SLois Curfman McInnes MATOP_GET_DIAGONAL = 17, 19161c1c02c0SLois Curfman McInnes MATOP_DIAGONAL_SCALE = 18, 19171c1c02c0SLois Curfman McInnes MATOP_NORM = 19, 19181c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_BEGIN = 20, 19191c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_END = 21, 1920d519adbfSMatthew Knepley MATOP_SET_OPTION = 22, 1921d519adbfSMatthew Knepley MATOP_ZERO_ENTRIES = 23, 1922d519adbfSMatthew Knepley MATOP_ZERO_ROWS = 24, 1923d519adbfSMatthew Knepley MATOP_LUFACTOR_SYMBOLIC = 25, 1924d519adbfSMatthew Knepley MATOP_LUFACTOR_NUMERIC = 26, 1925d519adbfSMatthew Knepley MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27, 1926d519adbfSMatthew Knepley MATOP_CHOLESKY_FACTOR_NUMERIC = 28, 1927e5f2d425SStefano Zampini MATOP_SETUP = 29, 1928d519adbfSMatthew Knepley MATOP_ILUFACTOR_SYMBOLIC = 30, 1929d519adbfSMatthew Knepley MATOP_ICCFACTOR_SYMBOLIC = 31, 1930a5b7ff6bSBarry Smith MATOP_GET_DIAGONAL_BLOCK = 32, 1931e5f2d425SStefano Zampini MATOP_SET_INF = 33, 1932d519adbfSMatthew Knepley MATOP_DUPLICATE = 34, 1933d519adbfSMatthew Knepley MATOP_FORWARD_SOLVE = 35, 1934d519adbfSMatthew Knepley MATOP_BACKWARD_SOLVE = 36, 1935d519adbfSMatthew Knepley MATOP_ILUFACTOR = 37, 1936d519adbfSMatthew Knepley MATOP_ICCFACTOR = 38, 1937d519adbfSMatthew Knepley MATOP_AXPY = 39, 19387dae84e0SHong Zhang MATOP_CREATE_SUBMATRICES = 40, 1939d519adbfSMatthew Knepley MATOP_INCREASE_OVERLAP = 41, 1940d519adbfSMatthew Knepley MATOP_GET_VALUES = 42, 1941d519adbfSMatthew Knepley MATOP_COPY = 43, 1942d519adbfSMatthew Knepley MATOP_GET_ROW_MAX = 44, 1943d519adbfSMatthew Knepley MATOP_SCALE = 45, 1944d519adbfSMatthew Knepley MATOP_SHIFT = 46, 194535153367SBarry Smith MATOP_DIAGONAL_SET = 47, 19469d39f69dSJed Brown MATOP_ZERO_ROWS_COLUMNS = 48, 19479d39f69dSJed Brown MATOP_SET_RANDOM = 49, 1948d519adbfSMatthew Knepley MATOP_GET_ROW_IJ = 50, 1949d519adbfSMatthew Knepley MATOP_RESTORE_ROW_IJ = 51, 1950d519adbfSMatthew Knepley MATOP_GET_COLUMN_IJ = 52, 1951d519adbfSMatthew Knepley MATOP_RESTORE_COLUMN_IJ = 53, 1952d519adbfSMatthew Knepley MATOP_FDCOLORING_CREATE = 54, 1953d519adbfSMatthew Knepley MATOP_COLORING_PATCH = 55, 1954d519adbfSMatthew Knepley MATOP_SET_UNFACTORED = 56, 1955d519adbfSMatthew Knepley MATOP_PERMUTE = 57, 1956d519adbfSMatthew Knepley MATOP_SET_VALUES_BLOCKED = 58, 19577dae84e0SHong Zhang MATOP_CREATE_SUBMATRIX = 59, 1958d519adbfSMatthew Knepley MATOP_DESTROY = 60, 1959d519adbfSMatthew Knepley MATOP_VIEW = 61, 1960d519adbfSMatthew Knepley MATOP_CONVERT_FROM = 62, 19618bb0f5c6SPierre Jolivet MATOP_MATMAT_MULT_SYMBOLIC = 63, 19628bb0f5c6SPierre Jolivet MATOP_MATMAT_MULT_NUMERIC = 64, 19638bb0f5c6SPierre Jolivet MATOP_SET_LOCAL_TO_GLOBAL_MAP = 65, 19648bb0f5c6SPierre Jolivet MATOP_SET_VALUES_LOCAL = 66, 19658bb0f5c6SPierre Jolivet MATOP_ZERO_ROWS_LOCAL = 67, 19668bb0f5c6SPierre Jolivet MATOP_GET_ROW_MAX_ABS = 68, 19678bb0f5c6SPierre Jolivet MATOP_GET_ROW_MIN_ABS = 69, 19688bb0f5c6SPierre Jolivet MATOP_CONVERT = 70, 19698bb0f5c6SPierre Jolivet MATOP_HAS_OPERATION = 71, 19708bb0f5c6SPierre Jolivet MATOP_FD_COLORING_APPLY = 72, 19718bb0f5c6SPierre Jolivet MATOP_SET_FROM_OPTIONS = 73, 19728bb0f5c6SPierre Jolivet MATOP_FIND_ZERO_DIAGONALS = 74, 19738bb0f5c6SPierre Jolivet MATOP_MULT_MULTIPLE = 75, 19748bb0f5c6SPierre Jolivet MATOP_SOLVE_MULTIPLE = 76, 19758bb0f5c6SPierre Jolivet MATOP_GET_INERTIA = 77, 19768bb0f5c6SPierre Jolivet MATOP_LOAD = 78, 19778bb0f5c6SPierre Jolivet MATOP_IS_SYMMETRIC = 79, 19788bb0f5c6SPierre Jolivet MATOP_IS_HERMITIAN = 80, 19798bb0f5c6SPierre Jolivet MATOP_IS_STRUCTURALLY_SYMMETRIC = 81, 19808bb0f5c6SPierre Jolivet MATOP_SET_VALUES_BLOCKEDLOCAL = 82, 19818bb0f5c6SPierre Jolivet MATOP_CREATE_VECS = 83, 19828bb0f5c6SPierre Jolivet MATOP_MAT_MULT_SYMBOLIC = 84, 19838bb0f5c6SPierre Jolivet MATOP_MAT_MULT_NUMERIC = 85, 19848bb0f5c6SPierre Jolivet MATOP_PTAP_NUMERIC = 86, 19858bb0f5c6SPierre Jolivet MATOP_MAT_TRANSPOSE_MULT_SYMBO = 87, 19868bb0f5c6SPierre Jolivet MATOP_MAT_TRANSPOSE_MULT_NUMER = 88, 19878bb0f5c6SPierre Jolivet MATOP_BIND_TO_CPU = 89, 19888bb0f5c6SPierre Jolivet MATOP_PRODUCTSETFROMOPTIONS = 90, 19898bb0f5c6SPierre Jolivet MATOP_PRODUCTSYMBOLIC = 91, 19908bb0f5c6SPierre Jolivet MATOP_PRODUCTNUMERIC = 92, 19918bb0f5c6SPierre Jolivet MATOP_CONJUGATE = 93, 19928bb0f5c6SPierre Jolivet MATOP_VIEW_NATIVE = 94, 19938bb0f5c6SPierre Jolivet MATOP_SET_VALUES_ROW = 95, 19948bb0f5c6SPierre Jolivet MATOP_REAL_PART = 96, 19958bb0f5c6SPierre Jolivet MATOP_IMAGINARY_PART = 97, 19968bb0f5c6SPierre Jolivet MATOP_GET_ROW_UPPER_TRIANGULAR = 98, 19978bb0f5c6SPierre Jolivet MATOP_RESTORE_ROW_UPPER_TRIANG = 99, 19988bb0f5c6SPierre Jolivet MATOP_MAT_SOLVE = 100, 19998bb0f5c6SPierre Jolivet MATOP_MAT_SOLVE_TRANSPOSE = 101, 20008bb0f5c6SPierre Jolivet MATOP_GET_ROW_MIN = 102, 20018bb0f5c6SPierre Jolivet MATOP_GET_COLUMN_VECTOR = 103, 2002421480d9SBarry Smith MATOP_GET_SEQ_NONZERO_STRUCTUR = 104, 2003421480d9SBarry Smith MATOP_CREATE = 105, 2004421480d9SBarry Smith MATOP_GET_GHOSTS = 106, 2005421480d9SBarry Smith MATOP_GET_LOCAL_SUB_MATRIX = 107, 2006421480d9SBarry Smith MATOP_RESTORE_LOCALSUB_MATRIX = 108, 2007421480d9SBarry Smith MATOP_MULT_DIAGONAL_BLOCK = 109, 2008421480d9SBarry Smith MATOP_HERMITIAN_TRANSPOSE = 110, 2009421480d9SBarry Smith MATOP_MULT_HERMITIAN_TRANSPOSE = 111, 2010421480d9SBarry Smith MATOP_MULT_HERMITIAN_TRANS_ADD = 112, 2011421480d9SBarry Smith MATOP_GET_MULTI_PROC_BLOCK = 113, 2012421480d9SBarry Smith MATOP_FIND_NONZERO_ROWS = 114, 2013421480d9SBarry Smith MATOP_GET_COLUMN_NORMS = 115, 2014421480d9SBarry Smith MATOP_INVERT_BLOCK_DIAGONAL = 116, 2015421480d9SBarry Smith MATOP_INVERT_VBLOCK_DIAGONAL = 117, 2016421480d9SBarry Smith MATOP_CREATE_SUB_MATRICES_MPI = 118, 2017421480d9SBarry Smith MATOP_SET_VALUES_BATCH = 119, 2018421480d9SBarry Smith MATOP_TRANSPOSE_MAT_MULT_SYMBO = 120, 2019421480d9SBarry Smith MATOP_TRANSPOSE_MAT_MULT_NUMER = 121, 2020421480d9SBarry Smith MATOP_TRANSPOSE_COLORING_CREAT = 122, 2021421480d9SBarry Smith MATOP_TRANS_COLORING_APPLY_SPT = 123, 2022421480d9SBarry Smith MATOP_TRANS_COLORING_APPLY_DEN = 124, 2023421480d9SBarry Smith MATOP_RART_NUMERIC = 125, 2024421480d9SBarry Smith MATOP_SET_BLOCK_SIZES = 126, 2025421480d9SBarry Smith MATOP_RESIDUAL = 127, 2026421480d9SBarry Smith MATOP_FDCOLORING_SETUP = 128, 2027421480d9SBarry Smith MATOP_FIND_OFFBLOCK_ENTRIES = 129, 2028421480d9SBarry Smith MATOP_MPICONCATENATESEQ = 130, 2029421480d9SBarry Smith MATOP_DESTROYSUBMATRICES = 131, 2030421480d9SBarry Smith MATOP_MAT_TRANSPOSE_SOLVE = 132, 2031421480d9SBarry Smith MATOP_GET_VALUES_LOCAL = 133, 2032421480d9SBarry Smith MATOP_CREATE_GRAPH = 134, 2033421480d9SBarry Smith MATOP_TRANSPOSE_SYMBOLIC = 135, 2034421480d9SBarry Smith MATOP_ELIMINATE_ZEROS = 136, 2035421480d9SBarry Smith MATOP_GET_ROW_SUM_ABS = 137, 2036421480d9SBarry Smith MATOP_GET_FACTOR = 138, 2037421480d9SBarry Smith MATOP_GET_BLOCK_DIAGONAL = 139, /* NOTE: caller of the two op functions owns the returned matrix */ 2038421480d9SBarry Smith MATOP_GET_VBLOCK_DIAGONAL = 140, /* and need to destroy it after use. */ 2039421480d9SBarry Smith MATOP_COPY_HASH_TO_XAIJ = 141, 2040421480d9SBarry Smith MATOP_GET_CURRENT_MEM_TYPE = 142, 2041421480d9SBarry Smith MATOP_ZERO_ROWS_COLUMNS_LOCAL = 143 2042fae171e0SBarry Smith } MatOperation; 2043c2be7ffeSStefano Zampini 204457d50842SBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, PetscErrorCodeFn *); 204557d50842SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, PetscErrorCodeFn **); 2046976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *); 204794342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *); 2048edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatProductClear()", ) static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A) 2049d71ae5a4SJacob Faibussowitsch { 20509371c9d4SSatish Balay return MatProductClear(A); 20519371c9d4SSatish Balay } 205257d50842SBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, PetscErrorCodeFn *); 205357d50842SBarry Smith PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, PetscErrorCodeFn **); 2054014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *); 2055d1319cabSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscCtxDestroyFn *); 2056db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType); 2057f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 2058f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 20590c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat); 2060cc1eb50dSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscCtxDestroyFn *, MatType, MatType); 2061b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *); 2062112a2221SBarry Smith 206390ace30eSBarry Smith /* 206490ace30eSBarry Smith Codes for matrices stored on disk. By default they are 206590ace30eSBarry Smith stored in a universal format. By changing the format with 20666a9046bcSBarry Smith PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will 206790ace30eSBarry Smith be stored in a way natural for the matrix, for example dense matrices 206890ace30eSBarry Smith would be stored as dense. Matrices stored this way may only be 2069f4403165SShri Abhyankar read into matrices of the same type. 207090ace30eSBarry Smith */ 207190ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1 207290ace30eSBarry Smith 2073014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal); 207475d48cdbSStefano Zampini 20758546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType); 207675d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 20774f58015eSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetAllowRepeated(Mat, PetscBool); 20784f58015eSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetAllowRepeated(Mat, PetscBool *); 207975d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool); 2080f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool); 2081014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *); 20823b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *); 2083014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat); 2084e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 20851f4e1ec7SBarry Smith 2086d9274352SBarry Smith /*S 2087d9274352SBarry Smith MatNullSpace - Object that removes a null space from a vector, i.e. 2088cb6b9846SMatthew Knepley orthogonalizes the vector to a subspace 2089d9274352SBarry Smith 2090f7a9e4ceSBarry Smith Level: advanced 2091d9274352SBarry Smith 20921cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()` 2093d9274352SBarry Smith S*/ 209474637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace; 2095d9274352SBarry Smith 209634731ec5SBarry Smith /*S 209734731ec5SBarry Smith MatNullSpaceRemoveFn - Function provided to `MatNullSpaceSetFunction()` that removes the null space from a vector 209834731ec5SBarry Smith 209934731ec5SBarry Smith Level: advanced 210034731ec5SBarry Smith 210134731ec5SBarry Smith Calling Sequence: 210234731ec5SBarry Smith + nsp - the `MatNullSpace` object 210334731ec5SBarry Smith . x - the vector from which to remove the null space 210434731ec5SBarry Smith - ctx - [optional] user-defined function context provided with `MatNullSpaceSetFunction()` 210534731ec5SBarry Smith 210634731ec5SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()` 210734731ec5SBarry Smith S*/ 2108348d23efSPierre Jolivet PETSC_EXTERN_TYPEDEF typedef PetscErrorCode MatNullSpaceRemoveFn(MatNullSpace nsp, Vec x, void *ctx); 210934731ec5SBarry Smith 2110014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *); 211134731ec5SBarry Smith PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, MatNullSpaceRemoveFn *, void *); 2112014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *); 2113d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec); 2114014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *); 21155fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *); 21165fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace); 2117014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace); 2118014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace); 2119014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *); 21204849c82aSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNullSpaces(PetscInt, Mat[], MatNullSpace *[]); 21214849c82aSBarry Smith PETSC_EXTERN PetscErrorCode MatRestoreNullSpaces(PetscInt, Mat[], MatNullSpace *[]); 2122014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *); 2123014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer); 2124014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **); 2125014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *); 212674637425SBarry Smith 2127014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS); 2128014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal); 2129014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *); 21303f1d51d7SBarry Smith 2131014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *); 2132014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *); 2133014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *); 2134c4f061fbSSatish Balay 21350bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *); 21360bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *); 21370bacdadaSStefano Zampini 2138edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperator()", ) static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B) 2139d71ae5a4SJacob Faibussowitsch { 2140f22e26b7SPierre Jolivet return MatComputeOperator(A, PETSC_NULLPTR, B); 21419371c9d4SSatish Balay } 2142edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperatorTranspose()", ) static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B) 2143d71ae5a4SJacob Faibussowitsch { 2144f22e26b7SPierre Jolivet return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B); 21459371c9d4SSatish Balay } 2146b0a32e0cSBarry Smith 214749bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *); 214849bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *); 2149a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **); 2150a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2151a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **); 2152a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **); 2153a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **); 2154a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2155a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **); 2156a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **); 2157dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat); 2158dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]); 2159dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]); 2160910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *); 216149bd79ccSDebojyoti Ghosh 2162014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec); 216304f1ad80SBarry Smith 21644bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDInitializePackage(void); 21654bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDFinalizePackage(void); 21664bf303faSJacob Faibussowitsch 21674f3e17a8SBarry Smith /*S 21684f3e17a8SBarry Smith MatMFFDFn - Function provided to `MatMFFDSetFunction()` that computes the function being differenced 21694f3e17a8SBarry Smith 21704f3e17a8SBarry Smith Level: advanced 21714f3e17a8SBarry Smith 21724f3e17a8SBarry Smith Calling Sequence: 21734f3e17a8SBarry Smith + ctx - [optional] user-defined function context provided with `MatMFFDSetFunction()` 21744f3e17a8SBarry Smith . x - input vector 21754f3e17a8SBarry Smith - y - output vector 21764f3e17a8SBarry Smith 21774f3e17a8SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMFFD()`, `MatMFFDSetFunction()`, `MatMFFDiFn`, `MatMFFDiBaseFn` 21784f3e17a8SBarry Smith S*/ 2179348d23efSPierre Jolivet PETSC_EXTERN_TYPEDEF typedef PetscErrorCode MatMFFDFn(void *ctx, Vec x, Vec y); 21804f3e17a8SBarry Smith 21814f3e17a8SBarry Smith /*S 21824f3e17a8SBarry Smith MatMFFDiFn - Function provided to `MatMFFDSetFunctioni()` that computes the function being differenced at a single point 21834f3e17a8SBarry Smith 21844f3e17a8SBarry Smith Level: advanced 21854f3e17a8SBarry Smith 21864f3e17a8SBarry Smith Calling Sequence: 21874f3e17a8SBarry Smith + ctx - [optional] user-defined function context provided with `MatMFFDSetFunction()` 21884f3e17a8SBarry Smith . i - the component of the vector to compute 21894f3e17a8SBarry Smith . x - input vector 21904f3e17a8SBarry Smith - result - the value of the function at that component (output) 21914f3e17a8SBarry Smith 21924f3e17a8SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMFFD()`, `MatMFFDSetFunction()`, `MatMFFDFn`, `MatMFFDiBaseFn` 21934f3e17a8SBarry Smith S*/ 21944f3e17a8SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode MatMFFDiFn(void *ctx, PetscInt i, Vec x, PetscScalar *result); 21954f3e17a8SBarry Smith 21964f3e17a8SBarry Smith /*S 21974f3e17a8SBarry Smith MatMFFDiBaseFn - Function provided to `MatMFFDSetFunctioniBase()` that computes the base of the function evaluations 21984f3e17a8SBarry Smith that will be used for differencing 21994f3e17a8SBarry Smith 22004f3e17a8SBarry Smith Level: advanced 22014f3e17a8SBarry Smith 22024f3e17a8SBarry Smith Calling Sequence: 22034f3e17a8SBarry Smith + ctx - [optional] user-defined function context provided with `MatMFFDSetFunction()` 22044f3e17a8SBarry Smith - x - input base vector 22054f3e17a8SBarry Smith 22064f3e17a8SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMFFD()`, `MatMFFDSetFunction()`, `MatMFFDSetFunctioniBase()`, `MatMFFDFn`, `MatMFFDiFn` 22074f3e17a8SBarry Smith S*/ 22084f3e17a8SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode MatMFFDiBaseFn(void *ctx, Vec x); 22094f3e17a8SBarry Smith 22104f3e17a8SBarry Smith /*S 22114f3e17a8SBarry Smith MatMFFDCheckhFn - Function provided to `MatMFFDSetCheckh()` that checks and possibly adjusts the value of `h` to ensure some property. 22124f3e17a8SBarry Smith that will be used for differencing 22134f3e17a8SBarry Smith 22144f3e17a8SBarry Smith Level: advanced 22154f3e17a8SBarry Smith 22164f3e17a8SBarry Smith Calling Sequence: 22174f3e17a8SBarry Smith + ctx - [optional] user-defined function context provided with `MatMFFDSetCheckh()` 22184f3e17a8SBarry Smith . x - input base vector 22194f3e17a8SBarry Smith . y - input step vector that the product is computed with 22204f3e17a8SBarry Smith - h - input tentative step, output possibly adjusted step 22214f3e17a8SBarry Smith 22224f3e17a8SBarry Smith Note: 22234f3e17a8SBarry Smith `MatMFFDCheckPositivity()` is one such function 22244f3e17a8SBarry Smith 22254f3e17a8SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMFFD()`, `MatMFFDSetCheckh()`, `MatMFFDCheckPositivity()` 22264f3e17a8SBarry Smith S*/ 22274f3e17a8SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode MatMFFDCheckhFn(void *ctx, Vec x, Vec y, PetscScalar *h); 22284f3e17a8SBarry Smith 2229014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2230014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec); 22314f3e17a8SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, MatMFFDFn *, void *); 22324f3e17a8SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, MatMFFDiFn *); 22334f3e17a8SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, MatMFFDiBaseFn *); 2234014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt); 2235014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat); 2236014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal); 2237014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt); 2238014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *); 2239014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]); 2240014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *); 22414f3e17a8SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, MatMFFDCheckhFn *, void *); 2242e884886fSBarry Smith 22436370053bSBarry Smith /*S 22446370053bSBarry Smith MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free 22456370053bSBarry Smith Jacobian vector products 2246e884886fSBarry Smith 22472ef1f0ffSBarry Smith Level: developer 22482ef1f0ffSBarry Smith 224995452b02SPatrick Sanan Notes: 225087497f52SBarry Smith `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure 22516370053bSBarry Smith 22522ef1f0ffSBarry Smith MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure 22536370053bSBarry Smith 22542ef1f0ffSBarry Smith This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator` 22556370053bSBarry Smith 22561cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`, 22572ef1f0ffSBarry Smith `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator` 22586370053bSBarry Smith S*/ 2259e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD; 2260e884886fSBarry Smith 226176bdecfbSBarry Smith /*J 22622ef1f0ffSBarry Smith MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function 2263e884886fSBarry Smith 226416a05f60SBarry Smith Values: 2265af27ebaaSBarry Smith + `MATMFFD_DS` - an algorithm described by Dennis and Schnabel {cite}`dennis:83` 2266af27ebaaSBarry Smith - `MATMFFD_WP` - the Walker-Pernice {cite}`pw98` strategy. 226716a05f60SBarry Smith 2268e884886fSBarry Smith Level: beginner 2269e884886fSBarry Smith 22701cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()` 227176bdecfbSBarry Smith J*/ 227219fd82e9SBarry Smith typedef const char *MatMFFDType; 2273e884886fSBarry Smith #define MATMFFD_DS "ds" 2274e884886fSBarry Smith #define MATMFFD_WP "wp" 2275e884886fSBarry Smith 227619fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType); 2277bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD)); 2278e884886fSBarry Smith 2279014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal); 2280014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool); 2281e884886fSBarry Smith 228261ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType); 228361ab5df0SBarry Smith 2284014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *); 2285014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *); 22867dbadf16SMatthew Knepley 228753022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS 22888434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscScalar(MatH2OpusKernelFn)(PetscInt, PetscReal[], PetscReal[], void *); 22898434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatH2OpusKernelFn *MatH2OpusKernel; 2290659ebe53SBarry Smith 22918434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernelFn *, void *, PetscReal, PetscInt, PetscInt, Mat *); 229253022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *); 229353022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal); 229453022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat); 229553022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal); 229653022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool); 229753022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *); 229853022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *); 229953022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *); 2300300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar); 2301a0d2e7d8SStefano Zampini #endif 2302a0d2e7d8SStefano Zampini 2303c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL 2304348d23efSPierre Jolivet PETSC_EXTERN_TYPEDEF typedef PetscErrorCode MatHtoolKernelFn(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *); 23058434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatHtoolKernelFn *MatHtoolKernel; 2306659ebe53SBarry Smith 23078434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernelFn *, void *, Mat *); 23088434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernelFn *, void *); 230998e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *); 231098e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *); 231198e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool); 2312c095613aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUseRecompression(Mat, PetscBool); 23132ef1f0ffSBarry Smith 2314c7a4214aSPierre Jolivet /*E 231587497f52SBarry Smith MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL` 2316c7a4214aSPierre Jolivet 2317c7a4214aSPierre Jolivet Values: 231887497f52SBarry Smith + `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation 231987497f52SBarry Smith . `MAT_HTOOL_COMPRESSOR_FULL_ACA` - full adaptive cross approximation 232087497f52SBarry Smith - `MAT_HTOOL_COMPRESSOR_SVD` - singular value decomposition 2321c7a4214aSPierre Jolivet 232216a05f60SBarry Smith Level: intermediate 232316a05f60SBarry Smith 23241cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType` 2325c7a4214aSPierre Jolivet E*/ 23269371c9d4SSatish Balay typedef enum { 23279371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA, 23289371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_FULL_ACA, 23299371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_SVD 23309371c9d4SSatish Balay } MatHtoolCompressorType; 23312ef1f0ffSBarry Smith 233298e73e17SPierre Jolivet /*E 233387497f52SBarry Smith MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL` 233498e73e17SPierre Jolivet 233598e73e17SPierre Jolivet Values: 233687497f52SBarry Smith + `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default) - axis computed via principle component analysis, split uniformly 233787497f52SBarry Smith . `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC` - axis computed via principle component analysis, split barycentrically 233887497f52SBarry Smith . `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR` - axis along the largest extent of the bounding box, split uniformly 233987497f52SBarry Smith - `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically 234098e73e17SPierre Jolivet 234116a05f60SBarry Smith Level: intermediate 234216a05f60SBarry Smith 23432ef1f0ffSBarry Smith Note: 23442ef1f0ffSBarry Smith Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types 234598e73e17SPierre Jolivet 23461cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType` 234798e73e17SPierre Jolivet E*/ 23489371c9d4SSatish Balay typedef enum { 23499371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_PCA_REGULAR, 23509371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC, 23519371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR, 23529371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC 23539371c9d4SSatish Balay } MatHtoolClusteringType; 2354c7a4214aSPierre Jolivet #endif 2355c7a4214aSPierre Jolivet 235697969023SHong Zhang #ifdef PETSC_HAVE_MUMPS 2357014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt); 2358bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *); 2359b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal); 2360bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *); 2361bc6112feSHong Zhang 2362ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *); 2363ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *); 2364ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *); 2365ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *); 23665c0bae8cSAshish Patel PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **); 236789a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat); 23680e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat); 236993d70b8aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMumpsSetBlk(Mat, PetscInt, const PetscInt[], const PetscInt[]); 2370*ac521185SJunchao Zhang 2371*ac521185SJunchao Zhang PETSC_EXTERN PetscErrorCode MatMumpsSetOocTmpDir(Mat, const char *); 2372*ac521185SJunchao Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetOocTmpDir(Mat, const char **); 237379578405SBarry Smith #else 237479578405SBarry Smith static inline PetscErrorCode MatMumpsSetIcntl(PETSC_UNUSED Mat F, PETSC_UNUSED PetscInt icntl, PETSC_UNUSED PetscInt ival) 237579578405SBarry Smith { 237679578405SBarry Smith return PETSC_SUCCESS; 237779578405SBarry Smith } 237879578405SBarry Smith static inline PetscErrorCode MatMumpsSetCntl(PETSC_UNUSED Mat F, PETSC_UNUSED PetscInt icntl, PETSC_UNUSED PetscReal val) 237979578405SBarry Smith { 238079578405SBarry Smith return PETSC_SUCCESS; 238179578405SBarry Smith } 238297969023SHong Zhang #endif 238323a5497aSJed Brown 2384b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO 2385d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt); 2386b500a6b7SJose David Bermeol #endif 2387b500a6b7SJose David Bermeol 2388d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO 2389d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt); 2390d305a81bSVasiliy Kozyrev #endif 2391d305a81bSVasiliy Kozyrev 2392d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU 2393014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal); 2394d954db57SHong Zhang #endif 2395d954db57SHong Zhang 2396fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST 2397fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *); 2398fb785984SHong Zhang #endif 2399fb785984SHong Zhang 2400575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK 2401542aee0fSPieter Ghysels /*E 240229e0a805SPieter Ghysels MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK` 2403542aee0fSPieter Ghysels 24042ef1f0ffSBarry Smith Values: 24052ef1f0ffSBarry Smith + `MAT_STRUMPACK_NATURAL` - use the current ordering 24062ef1f0ffSBarry Smith . `MAT_STRUMPACK_METIS` - use MeTis to compute an ordering 24072ef1f0ffSBarry Smith . `MAT_STRUMPACK_PARMETIS` - use ParMeTis to compute an ordering 24082ef1f0ffSBarry Smith . `MAT_STRUMPACK_SCOTCH` - use Scotch to compute an ordering 24092ef1f0ffSBarry Smith . `MAT_STRUMPACK_PTSCOTCH` - use parallel Scotch to compute an ordering 241029e0a805SPieter Ghysels . `MAT_STRUMPACK_RCM` - use an RCM ordering 241129e0a805SPieter Ghysels . `MAT_STRUMPACK_GEOMETRIC` - use a geometric ordering (needs mesh info from user) 241229e0a805SPieter Ghysels . `MAT_STRUMPACK_AMD` - approximate minimum degree 241329e0a805SPieter Ghysels . `MAT_STRUMPACK_MMD` - multiple minimum degree 241429e0a805SPieter Ghysels . `MAT_STRUMPACK_AND` - approximate nested dissection 241529e0a805SPieter Ghysels . `MAT_STRUMPACK_MLF` - minimum local fill 241629e0a805SPieter Ghysels - `MAT_STRUMPACK_SPECTRAL` - spectral nested dissection 24172ef1f0ffSBarry Smith 241816a05f60SBarry Smith Level: intermediate 241916a05f60SBarry Smith 24202ef1f0ffSBarry Smith Developer Note: 24212ef1f0ffSBarry Smith Should be called `MatSTRUMPACKReorderingType` 24222ef1f0ffSBarry Smith 242329e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetReordering()` 2424542aee0fSPieter Ghysels E*/ 24259371c9d4SSatish Balay typedef enum { 242629e0a805SPieter Ghysels MAT_STRUMPACK_NATURAL, 242729e0a805SPieter Ghysels MAT_STRUMPACK_METIS, 242829e0a805SPieter Ghysels MAT_STRUMPACK_PARMETIS, 242929e0a805SPieter Ghysels MAT_STRUMPACK_SCOTCH, 243029e0a805SPieter Ghysels MAT_STRUMPACK_PTSCOTCH, 243129e0a805SPieter Ghysels MAT_STRUMPACK_RCM, 243229e0a805SPieter Ghysels MAT_STRUMPACK_GEOMETRIC, 243329e0a805SPieter Ghysels MAT_STRUMPACK_AMD, 243429e0a805SPieter Ghysels MAT_STRUMPACK_MMD, 243529e0a805SPieter Ghysels MAT_STRUMPACK_AND, 243629e0a805SPieter Ghysels MAT_STRUMPACK_MLF, 243729e0a805SPieter Ghysels MAT_STRUMPACK_SPECTRAL 24389371c9d4SSatish Balay } MatSTRUMPACKReordering; 24392ef1f0ffSBarry Smith 244034f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering); 244129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetReordering(Mat, MatSTRUMPACKReordering *); 244229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricNxyz(Mat, PetscInt, PetscInt, PetscInt); 244329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricComponents(Mat, PetscInt); 244429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricWidth(Mat, PetscInt); 2445575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool); 244629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetColPerm(Mat, PetscBool *); 244729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGPU(Mat, PetscBool); 244829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetGPU(Mat, PetscBool *); 244929e0a805SPieter Ghysels 245029e0a805SPieter Ghysels /*E 245129e0a805SPieter Ghysels MatSTRUMPACKCompressionType - Compression used in the approximate sparse factorization solver `MATSOLVERSTRUMPACK` 245229e0a805SPieter Ghysels 245329e0a805SPieter Ghysels Values: 245429e0a805SPieter Ghysels + `MAT_STRUMPACK_COMPRESSION_TYPE_NONE` - no compression, direct solver 245529e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_HSS` - hierarchically semi-separable 245629e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_BLR` - block low rank 245729e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_HODLR` - hierarchically off-diagonal low rank (requires ButterfyPACK support, configure with --download-butterflypack) 245829e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR` - hybrid of BLR and HODLR (requires ButterfyPACK support, configure with --download-butterflypack) 245929e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR` - hybrid of lossy (ZFP), BLR and HODLR (requires ButterfyPACK and ZFP support, configure with --download-butterflypack --download-zfp) 246029e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS` - lossless compression (requires ZFP support, configure with --download-zfp) 246129e0a805SPieter Ghysels - `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY` - lossy compression (requires ZFP support, configure with --download-zfp) 246229e0a805SPieter Ghysels 246329e0a805SPieter Ghysels Level: intermediate 246429e0a805SPieter Ghysels 246529e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetCompression()` 246629e0a805SPieter Ghysels E*/ 246729e0a805SPieter Ghysels typedef enum { 246829e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_NONE, 246929e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_HSS, 247029e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_BLR, 247129e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_HODLR, 247229e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR, 247329e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR, 247429e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS, 247529e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY 247629e0a805SPieter Ghysels } MatSTRUMPACKCompressionType; 247729e0a805SPieter Ghysels 247829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompression(Mat, MatSTRUMPACKCompressionType); 247929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompression(Mat, MatSTRUMPACKCompressionType *); 248029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompRelTol(Mat, PetscReal); 248129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompRelTol(Mat, PetscReal *); 248229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompAbsTol(Mat, PetscReal); 248329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompAbsTol(Mat, PetscReal *); 248429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompMinSepSize(Mat, PetscInt); 248529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompMinSepSize(Mat, PetscInt *); 248629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLeafSize(Mat, PetscInt); 248729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLeafSize(Mat, PetscInt *); 248829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLossyPrecision(Mat, PetscInt); 248929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLossyPrecision(Mat, PetscInt *); 249029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompButterflyLevels(Mat, PetscInt); 249129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompButterflyLevels(Mat, PetscInt *); 2492575704cbSPieter Ghysels #endif 2493575704cbSPieter Ghysels 2494b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool); 24952216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *); 2496edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 13, 0, "MatBindToCPU()", ) static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg) 2497d71ae5a4SJacob Faibussowitsch { 24989371c9d4SSatish Balay return MatBindToCPU(A, flg); 24999371c9d4SSatish Balay } 250065a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool); 2501e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *); 2502e7e92044SBarry Smith 2503aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA 25043f9c0db1SPaul Mullowney /*E 25052ef1f0ffSBarry Smith MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU) 25062692e278SPaul Mullowney matrices. 2507e057df02SPaul Mullowney 25082ef1f0ffSBarry Smith Values: 250987497f52SBarry Smith + `MAT_CUSPARSE_CSR` - Compressed Sparse Row 251087497f52SBarry Smith . `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later). 251187497f52SBarry Smith - `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later). 2512e057df02SPaul Mullowney 2513e057df02SPaul Mullowney Level: intermediate 2514e057df02SPaul Mullowney 25151cc06b55SBarry Smith .seealso: [](ch_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation` 2516e057df02SPaul Mullowney E*/ 2517e057df02SPaul Mullowney 25189371c9d4SSatish Balay typedef enum { 25199371c9d4SSatish Balay MAT_CUSPARSE_CSR, 25209371c9d4SSatish Balay MAT_CUSPARSE_ELL, 25219371c9d4SSatish Balay MAT_CUSPARSE_HYB 25229371c9d4SSatish Balay } MatCUSPARSEStorageFormat; 2523e057df02SPaul Mullowney 2524e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */ 2525e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[]; 2526e057df02SPaul Mullowney 25273f9c0db1SPaul Mullowney /*E 25282ef1f0ffSBarry Smith MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU) 25292692e278SPaul Mullowney matrices whose operation should use a particular storage format. 2530e057df02SPaul Mullowney 25312ef1f0ffSBarry Smith Values: 25324cf0e950SBarry Smith + `MAT_CUSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()` 25334cf0e950SBarry Smith . `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()` 25344cf0e950SBarry Smith . `MAT_CUSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()` 25352ef1f0ffSBarry Smith - `MAT_CUSPARSE_ALL` - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices 2536e057df02SPaul Mullowney 2537e057df02SPaul Mullowney Level: intermediate 2538e057df02SPaul Mullowney 25391cc06b55SBarry Smith .seealso: [](ch_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat` 2540e057df02SPaul Mullowney E*/ 25419371c9d4SSatish Balay typedef enum { 25429371c9d4SSatish Balay MAT_CUSPARSE_MULT_DIAG, 25439371c9d4SSatish Balay MAT_CUSPARSE_MULT_OFFDIAG, 25449371c9d4SSatish Balay MAT_CUSPARSE_MULT, 25459371c9d4SSatish Balay MAT_CUSPARSE_ALL 25469371c9d4SSatish Balay } MatCUSPARSEFormatOperation; 2547e057df02SPaul Mullowney 254810e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 254910e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2550e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat); 2551365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool); 25525f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 25535f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 25545f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **); 25555f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **); 25565f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **); 25575f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **); 25585f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **); 25595f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **); 2560637a0070SStefano Zampini 2561637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 2562637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 2563637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **); 2564637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **); 2565637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **); 2566637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **); 2567637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **); 2568637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **); 2569637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *); 2570d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *); 2571637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat); 25723d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *); 25732d1451d4SHong Zhang 25742d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 25752d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 25769ae82921SPaul Mullowney #endif 25779ae82921SPaul Mullowney 257847d993e7Ssuyashtn #ifdef PETSC_HAVE_HIP 257947d993e7Ssuyashtn /*E 25802ef1f0ffSBarry Smith MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU) 258147d993e7Ssuyashtn matrices. 258247d993e7Ssuyashtn 25832ef1f0ffSBarry Smith Values: 25842ef1f0ffSBarry Smith + `MAT_HIPSPARSE_CSR` - Compressed Sparse Row 25852ef1f0ffSBarry Smith . `MAT_HIPSPARSE_ELL` - Ellpack 25862ef1f0ffSBarry Smith - `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format 258747d993e7Ssuyashtn 258816a05f60SBarry Smith Level: intermediate 258916a05f60SBarry Smith 25901cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation` 259147d993e7Ssuyashtn E*/ 259247d993e7Ssuyashtn 259347d993e7Ssuyashtn typedef enum { 259447d993e7Ssuyashtn MAT_HIPSPARSE_CSR, 259547d993e7Ssuyashtn MAT_HIPSPARSE_ELL, 259647d993e7Ssuyashtn MAT_HIPSPARSE_HYB 259747d993e7Ssuyashtn } MatHIPSPARSEStorageFormat; 259847d993e7Ssuyashtn 259947d993e7Ssuyashtn /* these will be strings associated with enumerated type defined above */ 260047d993e7Ssuyashtn PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[]; 260147d993e7Ssuyashtn 260247d993e7Ssuyashtn /*E 26032ef1f0ffSBarry Smith MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU) 260447d993e7Ssuyashtn matrices whose operation should use a particular storage format. 260547d993e7Ssuyashtn 26062ef1f0ffSBarry Smith Values: 26072ef1f0ffSBarry Smith + `MAT_HIPSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()` 26084cf0e950SBarry Smith . `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()` 26092ef1f0ffSBarry Smith . `MAT_HIPSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()` 26102ef1f0ffSBarry Smith - `MAT_HIPSPARSE_ALL` - sets the storage format for all HIPSPARSE (GPU) matrices 26112ef1f0ffSBarry Smith 261216a05f60SBarry Smith Level: intermediate 261316a05f60SBarry Smith 26141cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat` 261547d993e7Ssuyashtn E*/ 261647d993e7Ssuyashtn typedef enum { 261747d993e7Ssuyashtn MAT_HIPSPARSE_MULT_DIAG, 261847d993e7Ssuyashtn MAT_HIPSPARSE_MULT_OFFDIAG, 261947d993e7Ssuyashtn MAT_HIPSPARSE_MULT, 262047d993e7Ssuyashtn MAT_HIPSPARSE_ALL 262147d993e7Ssuyashtn } MatHIPSPARSEFormatOperation; 262247d993e7Ssuyashtn 262347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 262447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 262547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat); 262647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool); 262747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 262847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 262947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **); 263047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **); 263147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **); 263247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **); 263347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **); 263447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **); 263547d993e7Ssuyashtn 263647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 263747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 263847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **); 263947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **); 264047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **); 264147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **); 264247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **); 264347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **); 264447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *); 264547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *); 264647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat); 26473d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *); 2648773bf0f6SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2649773bf0f6SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 265047d993e7Ssuyashtn #endif 265147d993e7Ssuyashtn 2652d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL) 2653d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2654d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2655d67ff14aSKarl Rupp #endif 2656d67ff14aSKarl Rupp 26574bf303faSJacob Faibussowitsch #if PetscDefined(HAVE_KOKKOS) 26584bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 26594bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 26604bf303faSJacob Faibussowitsch #endif 26614bf303faSJacob Faibussowitsch 266254efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW) 2663014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec); 2664014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec); 26652a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *); 266654efbe56SHong Zhang #endif 266754efbe56SHong Zhang 2668d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE)) 2669d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2670d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt); 2671d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *); 2672d24d4204SJose E. Roman #endif 2673d24d4204SJose E. Roman 2674014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *); 2675014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *); 2676014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]); 2677014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]); 2678014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***); 2679014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *); 268019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType); 2681014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]); 2682014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat); 2683d8588912SDave May 26842ce66baaSPierre Jolivet PETSC_EXTERN PetscErrorCode MatFilter(Mat, PetscReal, PetscBool, PetscBool); 26852ce66baaSPierre Jolivet PETSC_DEPRECATED_FUNCTION(3, 20, 0, "MatFilter()", ) static inline PetscErrorCode MatChop(Mat A, PetscReal tol) 26862ce66baaSPierre Jolivet { 26872ce66baaSPierre Jolivet return MatFilter(A, tol, PETSC_FALSE, PETSC_FALSE); 26882ce66baaSPierre Jolivet } 2689e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *); 26904325cce7SMatthew G Knepley 2691b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **); 269253dd7562SDmitry Karpeev 2693c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat); 2694c094ef40SMatthew G. Knepley 269502218ef1SBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderMerge(Mat, Mat *); 2696539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *); 26971a2c6b5cSJunchao Zhang 26987ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *); 269972833a62Smarkadams4 2700e02fb3cdSMark Adams PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, PetscInt, PetscInt[], Mat *); 270158c11ad4SPierre Jolivet PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat, PetscBool); 2702ad6ad4e1SHansol Suh 2703d16ceb75SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *); 27043444e80cSBarry Smith 27053444e80cSBarry Smith PETSC_EXTERN PetscErrorCode MatSetHPL(Mat, int); 27063444e80cSBarry Smith #define PETSCBMHPL "hpl" 2707ce78bad3SBarry Smith 2708ce78bad3SBarry Smith PETSC_EXTERN PetscErrorCode MatDFischer(Mat, Vec, Vec, Vec, Vec, Vec, Vec, Vec, Vec); 2709