12eac72dbSBarry Smith /* 22eac72dbSBarry Smith Include file for the matrix component of PETSc 32eac72dbSBarry Smith */ 426bd1501SBarry Smith #ifndef PETSCMAT_H 526bd1501SBarry Smith #define PETSCMAT_H 6ac09b921SBarry Smith 72c8e378dSBarry Smith #include <petscvec.h> 82eac72dbSBarry Smith 9ac09b921SBarry Smith /* SUBMANSEC = Mat */ 10ac09b921SBarry Smith 11d9274352SBarry Smith /*S 128f6c3df8SBarry Smith Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without 138f6c3df8SBarry Smith an explicit sparse representation (such as matrix-free operators) 142eac72dbSBarry Smith 15d91e6319SBarry Smith Level: beginner 16d91e6319SBarry Smith 172ef1f0ffSBarry Smith Note: 182ef1f0ffSBarry Smith See [](doc_matrix) and `MatType` for available matrix types 192ef1f0ffSBarry Smith 202ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](doc_matrix), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()` 21d9274352SBarry Smith S*/ 22d9274352SBarry Smith typedef struct _p_Mat *Mat; 23d9274352SBarry Smith 2476bdecfbSBarry Smith /*J 258f6c3df8SBarry Smith MatType - String with the name of a PETSc matrix type 26d9274352SBarry Smith 27d9274352SBarry Smith Level: beginner 28d9274352SBarry Smith 292ef1f0ffSBarry Smith Note: 302ef1f0ffSBarry Smith [](doc_matrix) for a table of available matrix types 312ef1f0ffSBarry Smith 322ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()` 3376bdecfbSBarry Smith J*/ 3419fd82e9SBarry Smith typedef const char *MatType; 35273d9f13SBarry Smith #define MATSAME "same" 365a11e1b2SBarry Smith #define MATMAIJ "maij" 37273d9f13SBarry Smith #define MATSEQMAIJ "seqmaij" 38273d9f13SBarry Smith #define MATMPIMAIJ "mpimaij" 3949bd79ccSDebojyoti Ghosh #define MATKAIJ "kaij" 4049bd79ccSDebojyoti Ghosh #define MATSEQKAIJ "seqkaij" 4149bd79ccSDebojyoti Ghosh #define MATMPIKAIJ "mpikaij" 42273d9f13SBarry Smith #define MATIS "is" 435a11e1b2SBarry Smith #define MATAIJ "aij" 44273d9f13SBarry Smith #define MATSEQAIJ "seqaij" 45273d9f13SBarry Smith #define MATMPIAIJ "mpiaij" 465a11e1b2SBarry Smith #define MATAIJCRL "aijcrl" 475a11e1b2SBarry Smith #define MATSEQAIJCRL "seqaijcrl" 485a11e1b2SBarry Smith #define MATMPIAIJCRL "mpiaijcrl" 499ae82921SPaul Mullowney #define MATAIJCUSPARSE "aijcusparse" 509ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE "seqaijcusparse" 519ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE "mpiaijcusparse" 5247d993e7Ssuyashtn #define MATAIJHIPSPARSE "aijhipsparse" 5347d993e7Ssuyashtn #define MATSEQAIJHIPSPARSE "seqaijhipsparse" 5447d993e7Ssuyashtn #define MATMPIAIJHIPSPARSE "mpiaijhipsparse" 558c3ff71bSJunchao Zhang #define MATAIJKOKKOS "aijkokkos" 568c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS "seqaijkokkos" 578c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS "mpiaijkokkos" 58d67ff14aSKarl Rupp #define MATAIJVIENNACL "aijviennacl" 59d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL "seqaijviennacl" 60d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL "mpiaijviennacl" 615a11e1b2SBarry Smith #define MATAIJPERM "aijperm" 625a11e1b2SBarry Smith #define MATSEQAIJPERM "seqaijperm" 635a11e1b2SBarry Smith #define MATMPIAIJPERM "mpiaijperm" 644dfdc2d9SRichard Tran Mills #define MATAIJSELL "aijsell" 654dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL "seqaijsell" 664dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL "mpiaijsell" 674a2a386eSRichard Tran Mills #define MATAIJMKL "aijmkl" 684a2a386eSRichard Tran Mills #define MATSEQAIJMKL "seqaijmkl" 694a2a386eSRichard Tran Mills #define MATMPIAIJMKL "mpiaijmkl" 70b5b72c8aSIrina Sokolova #define MATBAIJMKL "baijmkl" 71b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL "seqbaijmkl" 72b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL "mpibaijmkl" 73273d9f13SBarry Smith #define MATSHELL "shell" 74c1fff1c6SRichard Tran Mills #define MATCENTERING "centering" 755a11e1b2SBarry Smith #define MATDENSE "dense" 76637a0070SStefano Zampini #define MATDENSECUDA "densecuda" 7747d993e7Ssuyashtn #define MATDENSEHIP "densehip" 78209238afSKris Buschelman #define MATSEQDENSE "seqdense" 79bfc799aaSStefano Zampini #define MATSEQDENSECUDA "seqdensecuda" 8047d993e7Ssuyashtn #define MATSEQDENSEHIP "seqdensehip" 81273d9f13SBarry Smith #define MATMPIDENSE "mpidense" 82637a0070SStefano Zampini #define MATMPIDENSECUDA "mpidensecuda" 8347d993e7Ssuyashtn #define MATMPIDENSEHIP "mpidensehip" 84db31f6deSJed Brown #define MATELEMENTAL "elemental" 85d24d4204SJose E. Roman #define MATSCALAPACK "scalapack" 865a11e1b2SBarry Smith #define MATBAIJ "baij" 87273d9f13SBarry Smith #define MATSEQBAIJ "seqbaij" 88273d9f13SBarry Smith #define MATMPIBAIJ "mpibaij" 89273d9f13SBarry Smith #define MATMPIADJ "mpiadj" 905a11e1b2SBarry Smith #define MATSBAIJ "sbaij" 91273d9f13SBarry Smith #define MATSEQSBAIJ "seqsbaij" 92273d9f13SBarry Smith #define MATMPISBAIJ "mpisbaij" 93cebc7f6cSBarry Smith #define MATMFFD "mffd" 94c8a8475eSBarry Smith #define MATNORMAL "normal" 95c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN "normalh" 96ab92ecdeSBarry Smith #define MATLRC "lrc" 972a6744ebSBarry Smith #define MATSCATTER "scatter" 98421e10b8SBarry Smith #define MATBLOCKMAT "blockmat" 99793850ffSBarry Smith #define MATCOMPOSITE "composite" 1001f8c7532SHong Zhang #define MATFFT "fft" 1011f8c7532SHong Zhang #define MATFFTW "fftw" 102e133240eSMatthew G Knepley #define MATSEQCUFFT "seqcufft" 10347d993e7Ssuyashtn #define MATSEQHIPFFT "seqhipfft" 104013e2dc7SBarry Smith #define MATTRANSPOSEMAT PETSC_DEPRECATED_MACRO("GCC warning \"MATTRANSPOSEMAT macro is deprecated use MATTRANSPOSEVIRTUAL (since version 3.18)\"") "transpose" 105013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL "transpose" 106013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose" 10772ca8751SBarry Smith #define MATSCHURCOMPLEMENT "schurcomplement" 1081d6018f0SLisandro Dalcin #define MATPYTHON "python" 10963c07aadSStefano Zampini #define MATHYPRE "hypre" 110f91d8e95SBarry Smith #define MATHYPRESTRUCT "hyprestruct" 111a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT "hypresstruct" 112ee1cef2cSJed Brown #define MATSUBMATRIX "submatrix" 1132c0dbf93SJed Brown #define MATLOCALREF "localref" 114d8588912SDave May #define MATNEST "nest" 115c094ef40SMatthew G. Knepley #define MATPREALLOCATOR "preallocator" 116d4002b98SHong Zhang #define MATSELL "sell" 117d4002b98SHong Zhang #define MATSEQSELL "seqsell" 118d4002b98SHong Zhang #define MATMPISELL "mpisell" 1192d1451d4SHong Zhang #define MATSELLCUDA "sellcuda" 1202d1451d4SHong Zhang #define MATSEQSELLCUDA "seqsellcuda" 1212d1451d4SHong Zhang #define MATMPISELLCUDA "mpisellcuda" 122a3b2e22bSHong Zhang #define MATDUMMY "dummy" 123cd929ea3SAlp Dener #define MATLMVM "lmvm" 12478e4361aSAlp Dener #define MATLMVMDFP "lmvmdfp" 12578e4361aSAlp Dener #define MATLMVMBFGS "lmvmbfgs" 12678e4361aSAlp Dener #define MATLMVMSR1 "lmvmsr1" 127864588a7SAlp Dener #define MATLMVMBROYDEN "lmvmbroyden" 128864588a7SAlp Dener #define MATLMVMBADBROYDEN "lmvmbadbroyden" 129864588a7SAlp Dener #define MATLMVMSYMBROYDEN "lmvmsymbroyden" 130864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN "lmvmsymbadbroyden" 131864588a7SAlp Dener #define MATLMVMDIAGBROYDEN "lmvmdiagbroyden" 1323423f386SBarry Smith #define MATCONSTANTDIAGONAL "constantdiagonal" 133c7a4214aSPierre Jolivet #define MATHTOOL "htool" 13453022affSStefano Zampini #define MATH2OPUS "h2opus" 135773941d6SBarry Smith 13676bdecfbSBarry Smith /*J 1373ca39a21SBarry Smith MatSolverType - String with the name of a PETSc matrix solver type. 1389989ab13SBarry Smith 139c2b89b5dSBarry Smith For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc 1409989ab13SBarry Smith 1419989ab13SBarry Smith Level: beginner 1429989ab13SBarry Smith 1432ef1f0ffSBarry Smith Note: 1442ef1f0ffSBarry Smith `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package for which you can use --download-suitesparse 145c7ccbb75SBarry Smith 1462ef1f0ffSBarry Smith .seealso: [](sec_matfactor), [](chapter_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()` 14776bdecfbSBarry Smith J*/ 148ea799195SBarry Smith typedef const char *MatSolverType; 1492692d6eeSBarry Smith #define MATSOLVERSUPERLU "superlu" 1502692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST "superlu_dist" 15108f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK "strumpack" 1522692d6eeSBarry Smith #define MATSOLVERUMFPACK "umfpack" 15320db9a53SJed Brown #define MATSOLVERCHOLMOD "cholmod" 154d89f5e7aSBarry Smith #define MATSOLVERKLU "klu" 155d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL "elemental" 156d24d4204SJose E. Roman #define MATSOLVERSCALAPACK "scalapack" 1572692d6eeSBarry Smith #define MATSOLVERESSL "essl" 1582692d6eeSBarry Smith #define MATSOLVERLUSOL "lusol" 1592692d6eeSBarry Smith #define MATSOLVERMUMPS "mumps" 160d615f992SSatish Balay #define MATSOLVERMKL_PARDISO "mkl_pardiso" 161d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO "mkl_cpardiso" 1622692d6eeSBarry Smith #define MATSOLVERPASTIX "pastix" 1632692d6eeSBarry Smith #define MATSOLVERMATLAB "matlab" 1642692d6eeSBarry Smith #define MATSOLVERPETSC "petsc" 1652692d6eeSBarry Smith #define MATSOLVERBAS "bas" 1669ae82921SPaul Mullowney #define MATSOLVERCUSPARSE "cusparse" 167bddcd29dSMark Adams #define MATSOLVERCUSPARSEBAND "cusparseband" 168bfc799aaSStefano Zampini #define MATSOLVERCUDA "cuda" 16947d993e7Ssuyashtn #define MATSOLVERHIPSPARSE "hipsparse" 17047d993e7Ssuyashtn #define MATSOLVERHIPSPARSEBAND "hipsparseband" 17147d993e7Ssuyashtn #define MATSOLVERHIP "hip" 172930e68a5SMark Adams #define MATSOLVERKOKKOS "kokkos" 1738f7e8f9dSMark Adams #define MATSOLVERKOKKOSDEVICE "kokkosdevice" 174a2fc1e05SToby Isaac #define MATSOLVERSPQR "spqr" 175c0cdd4a1SDahai Guo 176b24902e0SBarry Smith /*E 177b24902e0SBarry Smith MatFactorType - indicates what type of factorization is requested 178b24902e0SBarry Smith 179b24902e0SBarry Smith Level: beginner 180b24902e0SBarry Smith 1812ef1f0ffSBarry Smith Values: 1822ef1f0ffSBarry Smith + `MAT_FACTOR_LU` - LU factorization 1832ef1f0ffSBarry Smith . `MAT_FACTOR_CHOLESKY` - Cholesky factorization 1842ef1f0ffSBarry Smith . `MAT_FACTOR_ILU` - ILU factorization 1852ef1f0ffSBarry Smith . `MAT_FACTOR_ICC` - incomplete Cholesky factorization 1862ef1f0ffSBarry Smith . `MAT_FACTOR_ILUDT` - ILU factorization with drop tolerance 1872ef1f0ffSBarry Smith - `MAT_FACTOR_QR` - QR factorization 188b24902e0SBarry Smith 1892ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()` 190b24902e0SBarry Smith E*/ 1919371c9d4SSatish Balay typedef enum { 1929371c9d4SSatish Balay MAT_FACTOR_NONE, 1939371c9d4SSatish Balay MAT_FACTOR_LU, 1949371c9d4SSatish Balay MAT_FACTOR_CHOLESKY, 1959371c9d4SSatish Balay MAT_FACTOR_ILU, 1969371c9d4SSatish Balay MAT_FACTOR_ICC, 1979371c9d4SSatish Balay MAT_FACTOR_ILUDT, 1989371c9d4SSatish Balay MAT_FACTOR_QR, 1999371c9d4SSatish Balay MAT_FACTOR_NUM_TYPES 2009371c9d4SSatish Balay } MatFactorType; 201014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[]; 202e92e720dSBarry Smith 203ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *); 204ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *); 205f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *); 206d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatFactorGetCanUseOrdering() (since version 3.15)") static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b) 207d71ae5a4SJacob Faibussowitsch { 2089371c9d4SSatish Balay return MatFactorGetCanUseOrdering(A, b); 2099371c9d4SSatish Balay } 210ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *); 211014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *); 2127abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType); 2132430ea28SJose E. Roman PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatSolverFunction)(Mat, MatFactorType, Mat *); 2142430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFunction); 2152430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFunction *); 21625ef9dfeSBarry Smith typedef MatSolverType MatSolverPackage PETSC_DEPRECATED_TYPEDEF("Use MatSolverType (since version 3.9)"); 217d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSolverTypeRegister() (since version 3.9)") static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFunction f) 218d71ae5a4SJacob Faibussowitsch { 2199371c9d4SSatish Balay return MatSolverTypeRegister(stype, mtype, ftype, f); 2209371c9d4SSatish Balay } 221d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSolverTypeGet() (since version 3.9)") static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFunction *f) 222d71ae5a4SJacob Faibussowitsch { 2239371c9d4SSatish Balay return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f); 2249371c9d4SSatish Balay } 2259989ab13SBarry Smith 2264222ddf1SHong Zhang /*E 2274222ddf1SHong Zhang MatProductType - indicates what type of matrix product is requested 2284222ddf1SHong Zhang 2294222ddf1SHong Zhang Level: beginner 2304222ddf1SHong Zhang 2312ef1f0ffSBarry Smith Values: 2322ef1f0ffSBarry Smith + `MATPRODUCT_AB` - product of two matrices 2332ef1f0ffSBarry Smith . `MATPRODUCT_AtB` - product of the transpose of a given matrix with a matrix 2342ef1f0ffSBarry Smith . `MATPRODUCT_ABt` - product of a matrix with the transpose of another given matrix 2352ef1f0ffSBarry Smith . `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself 2362ef1f0ffSBarry Smith . `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix 2372ef1f0ffSBarry Smith - `MATPRODUCT_ABC` - the product of three matrices 2382ef1f0ffSBarry Smith 2392ef1f0ffSBarry Smith .seealso: [](sec_matmatproduct), [](chapter_matrices), `MatProductSetType()` 2404222ddf1SHong Zhang E*/ 2419371c9d4SSatish Balay typedef enum { 2429371c9d4SSatish Balay MATPRODUCT_UNSPECIFIED = 0, 2439371c9d4SSatish Balay MATPRODUCT_AB, 2449371c9d4SSatish Balay MATPRODUCT_AtB, 2459371c9d4SSatish Balay MATPRODUCT_ABt, 2469371c9d4SSatish Balay MATPRODUCT_PtAP, 2479371c9d4SSatish Balay MATPRODUCT_RARt, 2489371c9d4SSatish Balay MATPRODUCT_ABC 2499371c9d4SSatish Balay } MatProductType; 250544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[]; 2514222ddf1SHong Zhang 2524222ddf1SHong Zhang /*J 2534222ddf1SHong Zhang MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation 2544222ddf1SHong Zhang 2554222ddf1SHong Zhang Level: beginner 2564222ddf1SHong Zhang 2572ef1f0ffSBarry Smith .seealso: [](sec_matmatproduct), [](chapter_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType` 2584222ddf1SHong Zhang J*/ 2594222ddf1SHong Zhang typedef const char *MatProductAlgorithm; 2603e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT "default" 2613e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED "sorted" 2623e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE "scalable" 2633e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST "scalable_fast" 2643e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP "heap" 2653e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP "btheap" 2663e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED "llcondensed" 2673e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE "rowmerge" 2683e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT "outerproduct" 2693e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB "at*b" 2703e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP "rap" 2713e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE "nonscalable" 2723e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI "seqmpi" 2733e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND "backend" 2743e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING "overlapping" 2753e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED "merged" 2763e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE "allatonce" 2773e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged" 2783e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV "allgatherv" 2793e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC "cyclic" 2803e662e0bSHong Zhang #if defined(PETSC_HAVE_HYPRE) 2813e662e0bSHong Zhang #define MATPRODUCTALGORITHMHYPRE "hypre" 2823e662e0bSHong Zhang #endif 2834222ddf1SHong Zhang 2844222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *); 2854222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat); 2864222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType); 2874222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm); 2884222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal); 2894222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat); 2904222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat); 2914222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat); 2924222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat); 2934417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat); 2946718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer); 295c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *); 296c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *); 2974222ddf1SHong Zhang 298c06d978dSMatthew Knepley /* Logging support */ 2990700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */ 300014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID; 301335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID; 302014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID; 303014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID; 304014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID; 305014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID; 306014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID; 307014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID; 308c06d978dSMatthew Knepley 309ceb03754SKris Buschelman /*E 3102ef1f0ffSBarry Smith MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions 311cf37664fSBarry Smith are to be reused to store the new matrix values. 312cf37664fSBarry Smith 3132ef1f0ffSBarry Smith Values: 3142ef1f0ffSBarry Smith + `MAT_INITIAL_MATRIX` - create a new matrix 3152ef1f0ffSBarry Smith . `MAT_REUSE_MATRIX` - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX` 3162ef1f0ffSBarry Smith . `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions) 3172ef1f0ffSBarry Smith - `MAT_IGNORE_MATRIX` - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions) 318ceb03754SKris Buschelman 319ceb03754SKris Buschelman Level: beginner 320ceb03754SKris Buschelman 3212ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()` 322ceb03754SKris Buschelman E*/ 3239371c9d4SSatish Balay typedef enum { 3249371c9d4SSatish Balay MAT_INITIAL_MATRIX, 3259371c9d4SSatish Balay MAT_REUSE_MATRIX, 3269371c9d4SSatish Balay MAT_IGNORE_MATRIX, 3279371c9d4SSatish Balay MAT_INPLACE_MATRIX 3289371c9d4SSatish Balay } MatReuse; 329ceb03754SKris Buschelman 3305494a064SHong Zhang /*E 3312ef1f0ffSBarry Smith MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()` 3322ef1f0ffSBarry Smith include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`. 3335494a064SHong Zhang 3342ef1f0ffSBarry Smith Level: developer 3355494a064SHong Zhang 3362ef1f0ffSBarry Smith Values: 3372ef1f0ffSBarry Smith + `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values 3382ef1f0ffSBarry Smith - `MAT_GET_VALUES` - copy the matrix values 3392ef1f0ffSBarry Smith 3402ef1f0ffSBarry Smith Developer Note: 3412ef1f0ffSBarry Smith Why is not just a boolean used for this information? 3422ef1f0ffSBarry Smith 3432ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()` 3445494a064SHong Zhang E*/ 3459371c9d4SSatish Balay typedef enum { 3469371c9d4SSatish Balay MAT_DO_NOT_GET_VALUES, 3479371c9d4SSatish Balay MAT_GET_VALUES 3489371c9d4SSatish Balay } MatCreateSubMatrixOption; 3495494a064SHong Zhang 350607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void); 351c06d978dSMatthew Knepley 352014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *); 353014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt); 35419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType); 3550d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *); 3560d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType); 357014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat); 358fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]); 359bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat)); 36023bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]); 361014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]); 36226cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]); 36326cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]); 364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]); 365014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]); 36684d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool); 367f69a0ea3SMatthew Knepley 368140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList; 369140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList; 370140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList; 37128988994SBarry Smith 3723b224e63SBarry Smith /*E 373aa6c7ce3SBarry Smith MatStructure - Indicates if two matrices have the same nonzero structure 3743b224e63SBarry Smith 3753b224e63SBarry Smith Level: beginner 3763b224e63SBarry Smith 3772ef1f0ffSBarry Smith Values: 3782ef1f0ffSBarry Smith + `SAME_NONZERO_PATTERN` - the two matrices have identical nonzero patterns 3792ef1f0ffSBarry Smith . `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns 3802ef1f0ffSBarry Smith . `SUBSET_NONZERO_PATTERN` - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix 3812ef1f0ffSBarry Smith - `UNKNOWN_NONZERO_PATTERN` - there is no known relationship between the nonzero patterns. In this case the implementations 3822ef1f0ffSBarry Smith may try to detect a relationship to optimize the operation 383531d0c6aSBarry Smith 3842ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()` 3853b224e63SBarry Smith E*/ 3869371c9d4SSatish Balay typedef enum { 3879371c9d4SSatish Balay DIFFERENT_NONZERO_PATTERN, 3889371c9d4SSatish Balay SUBSET_NONZERO_PATTERN, 3899371c9d4SSatish Balay SAME_NONZERO_PATTERN, 3909371c9d4SSatish Balay UNKNOWN_NONZERO_PATTERN 3919371c9d4SSatish Balay } MatStructure; 392d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[]; 3933b224e63SBarry Smith 3949779e05dSSatish Balay #if defined PETSC_HAVE_MKL_SPARSE 395ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 396ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 39780095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 398ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 39980095d54SIrina Sokolova #endif 400cd929ea3SAlp Dener 401d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 402d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 403d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]); 404d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 40507e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *); 40607e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *); 40707e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *); 40807e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt); 409*b921024eSHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *); 41080095d54SIrina Sokolova 411014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 412014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 413014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 414014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 415014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 4168f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 4176a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]); 418014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *); 4193b00a383SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *); 4203b00a383SHong Zhang 421014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 422014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 423014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 4247e8381f9SStefano Zampini 425e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]); 42682a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]); 4277e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode); 428d21a29f3SJed Brown 429014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *); 430014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 431d21a29f3SJed Brown 432014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 433014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 43438f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 435014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 4364cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]); 437dfb205c3SBarry Smith 438014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *); 439c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *); 440014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *); 441c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *); 442986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *); 443267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *); 444c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *); 445014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 446014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 447c0cdd4a1SDahai Guo 448014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *); 449014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter); 450014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *); 451014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *); 452014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat); 453014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat); 4549371c9d4SSatish Balay typedef enum { 4559371c9d4SSatish Balay MAT_COMPOSITE_MERGE_RIGHT, 4569371c9d4SSatish Balay MAT_COMPOSITE_MERGE_LEFT 4579371c9d4SSatish Balay } MatCompositeMergeType; 4588c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType); 459014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *); 4609371c9d4SSatish Balay typedef enum { 4619371c9d4SSatish Balay MAT_COMPOSITE_ADDITIVE, 4629371c9d4SSatish Balay MAT_COMPOSITE_MULTIPLICATIVE 4639371c9d4SSatish Balay } MatCompositeType; 464014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType); 4656dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *); 4663b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure); 4673b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *); 4686d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *); 4698b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *); 47003049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *); 4716d7c1e57SBarry Smith 47219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *); 473014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *); 474dedccee8SHong Zhang 475014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *); 4768060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *); 477d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *); 47806511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *); 479fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *); 48065f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *); 48154e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *); 48254e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS); 483014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *); 4843423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *); 4851472f72bSBarry Smith 486978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE) 487d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 488978814f1SStefano Zampini #endif 489978814f1SStefano Zampini 490014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]); 491ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]); 4921d6018f0SLisandro Dalcin 493846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat); 494014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat); 495014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *); 496e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *); 49721c89e3eSBarry Smith 498014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat); 499014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat); 500014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat); 501014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *); 502014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *); 503713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **); 5040da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *); 505479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat); 5068a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *); 50799cafbc1SBarry Smith 5088ed539a5SBarry Smith /* ------------------------------------------------------------*/ 509014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 5108a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode); 511014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 512014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]); 513014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]); 514014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]); 51573a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom); 51684cb2905SBarry Smith 5172ef4de8bSBarry Smith /*S 5182ef1f0ffSBarry Smith MatStencil - Data structure (C struct) for storing information about rows and 5192ef1f0ffSBarry Smith columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()` 52062ef0227SBarry Smith 5212ef1f0ffSBarry Smith Level: beginner 5222ef1f0ffSBarry Smith 5232ef1f0ffSBarry Smith Notes: 52462ef0227SBarry Smith The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored). 52587497f52SBarry Smith The c represents the the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored. 52662ef0227SBarry Smith 52787497f52SBarry Smith For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`. 528be479b30SJed Brown 5292ef1f0ffSBarry Smith For staggered grids, see `DMStagStencil` 5302ef4de8bSBarry Smith 5312ef1f0ffSBarry Smith Fortran Note: 5322ef1f0ffSBarry Smith See `MatSetValuesStencil()` for details. 5332ef4de8bSBarry Smith 5342ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`, 5352ef1f0ffSBarry Smith `DMStagStencil` 5362ef4de8bSBarry Smith S*/ 537435da068SBarry Smith typedef struct { 538c1ac3661SBarry Smith PetscInt k, j, i, c; 539435da068SBarry Smith } MatStencil; 5402ef4de8bSBarry Smith 541014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 542014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 543014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt); 544435da068SBarry Smith 545d91e6319SBarry Smith /*E 5462ef1f0ffSBarry Smith MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use 547d91e6319SBarry Smith 548d91e6319SBarry Smith Level: beginner 549d91e6319SBarry Smith 5502ef1f0ffSBarry Smith Values: 5512ef1f0ffSBarry Smith + `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix 5522ef1f0ffSBarry Smith - `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted 5532ef1f0ffSBarry Smith 5542ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()` 555d91e6319SBarry Smith E*/ 5569371c9d4SSatish Balay typedef enum { 5579371c9d4SSatish Balay MAT_FLUSH_ASSEMBLY = 1, 5589371c9d4SSatish Balay MAT_FINAL_ASSEMBLY = 0 5599371c9d4SSatish Balay } MatAssemblyType; 560014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType); 561014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType); 562014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *); 5634f9c727eSBarry Smith 564d91e6319SBarry Smith /*E 5652ef1f0ffSBarry Smith MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage 566d91e6319SBarry Smith 567d91e6319SBarry Smith Level: beginner 568d91e6319SBarry Smith 5692ef1f0ffSBarry Smith Note: 5702ef1f0ffSBarry Smith See `MatSetOption()` for the use of the options 5712ef1f0ffSBarry Smith 5722ef1f0ffSBarry Smith Developer Note: 57395452b02SPatrick Sanan Entries that are negative need not be called collectively by all processes. 574382164b0SBarry Smith 5752ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatSetOption()` 576d91e6319SBarry Smith E*/ 5779371c9d4SSatish Balay typedef enum { 5789371c9d4SSatish Balay MAT_OPTION_MIN = -3, 579c5e4d11fSDmitry Karpeev MAT_UNUSED_NONZERO_LOCATION_ERR = -2, 58092d4d306SBarry Smith MAT_ROW_ORIENTED = -1, 581382164b0SBarry Smith MAT_SYMMETRIC = 1, 582382164b0SBarry Smith MAT_STRUCTURALLY_SYMMETRIC = 2, 5838c78258cSHong Zhang MAT_FORCE_DIAGONAL_ENTRIES = 3, 584382164b0SBarry Smith MAT_IGNORE_OFF_PROC_ENTRIES = 4, 585382164b0SBarry Smith MAT_USE_HASH_TABLE = 5, 586382164b0SBarry Smith MAT_KEEP_NONZERO_PATTERN = 6, 587382164b0SBarry Smith MAT_IGNORE_ZERO_ENTRIES = 7, 588382164b0SBarry Smith MAT_USE_INODES = 8, 589382164b0SBarry Smith MAT_HERMITIAN = 9, 590382164b0SBarry Smith MAT_SYMMETRY_ETERNAL = 10, 591c5e4d11fSDmitry Karpeev MAT_NEW_NONZERO_LOCATION_ERR = 11, 592382164b0SBarry Smith MAT_IGNORE_LOWER_TRIANGULAR = 12, 593382164b0SBarry Smith MAT_ERROR_LOWER_TRIANGULAR = 13, 594382164b0SBarry Smith MAT_GETROW_UPPERTRIANGULAR = 14, 595382164b0SBarry Smith MAT_SPD = 15, 59692d4d306SBarry Smith MAT_NO_OFF_PROC_ZERO_ROWS = 16, 59792d4d306SBarry Smith MAT_NO_OFF_PROC_ENTRIES = 17, 59892d4d306SBarry Smith MAT_NEW_NONZERO_LOCATIONS = 18, 599c5e4d11fSDmitry Karpeev MAT_NEW_NONZERO_ALLOCATION_ERR = 19, 600c5e4d11fSDmitry Karpeev MAT_SUBSET_OFF_PROC_ENTRIES = 20, 601c10200c1SHong Zhang MAT_SUBMAT_SINGLEIS = 21, 602957cac9fSHong Zhang MAT_STRUCTURE_ONLY = 22, 603071fcb05SBarry Smith MAT_SORTED_FULL = 23, 6041a2c6b5cSJunchao Zhang MAT_FORM_EXPLICIT_TRANSPOSE = 24, 605b94d7dedSBarry Smith MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25, 606b94d7dedSBarry Smith MAT_SPD_ETERNAL = 26, 6079371c9d4SSatish Balay MAT_OPTION_MAX = 27 6089371c9d4SSatish Balay } MatOption; 609e057df02SPaul Mullowney 6100f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions; 611014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOption(Mat, MatOption, PetscBool); 6127d68702bSBarry Smith PETSC_EXTERN PetscErrorCode MatGetOption(Mat, MatOption, PetscBool *); 613856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode MatPropagateSymmetryOptions(Mat, Mat); 61419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetType(Mat, MatType *); 61584cb2905SBarry Smith 616014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 617014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 618014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 619014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowUpperTriangular(Mat); 620014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowUpperTriangular(Mat); 621014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnVector(Mat, Vec, PetscInt); 6228c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetArray(Mat, PetscScalar *[]); 6238f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]); 624d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]); 6258c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArray(Mat, PetscScalar *[]); 6268f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]); 627d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]); 62821e72a00SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *); 629bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 6304099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetType(Mat, MatType); 631ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatSeqAIJKron(Mat, Mat, MatReuse, Mat *); 632388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *)); 6334099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList; 634cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJGetArray(Mat, PetscScalar *[]); 635cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJRestoreArray(Mat, PetscScalar *[]); 6368397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJGetArray(Mat, PetscScalar *[]); 6378397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]); 6388c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArray(Mat, PetscScalar *[]); 6398c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArray(Mat, PetscScalar *[]); 640d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDensePlaceArray(Mat, const PetscScalar[]); 641d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseReplaceArray(Mat, const PetscScalar[]); 642d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseResetArray(Mat); 6438572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArrayRead(Mat, const PetscScalar *[]); 6448572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayRead(Mat, const PetscScalar *[]); 6456947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetArrayWrite(Mat, PetscScalar *[]); 6466947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWrite(Mat, PetscScalar *[]); 647cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *); 648cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]); 649cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *); 650cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]); 651cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *); 652cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]); 653014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSize(Mat, PetscInt *); 654014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSize(Mat, PetscInt); 655014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSizes(Mat, PetscInt *, PetscInt *); 656014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizes(Mat, PetscInt, PetscInt); 65733d57670SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizesFromMats(Mat, Mat, Mat); 6580da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetVariableBlockSizes(Mat, PetscInt, PetscInt *); 6590da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt **); 6600da83c2eSBarry Smith 66186aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]); 66286aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]); 6636947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *); 6646947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *); 6656947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *); 6666947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *); 6676947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *); 6686947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *); 669a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 6705ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *); 6711620fd73SBarry Smith 672014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec); 673014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec); 674014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec); 675014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec); 676014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec); 677014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *); 678014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *); 679014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec); 680014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec); 681014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat); 682bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat); 683eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat); 684f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec); 685f5edf698SHong Zhang 686d91e6319SBarry Smith /*E 687d91e6319SBarry Smith MatDuplicateOption - Indicates if a duplicated sparse matrix should have 688d91e6319SBarry Smith its numerical values copied over or just its nonzero structure. 689d91e6319SBarry Smith 690d91e6319SBarry Smith Level: beginner 691d91e6319SBarry Smith 6922ef1f0ffSBarry Smith Values: 6932ef1f0ffSBarry Smith + `MAT_DO_NOT_COPY_VALUES` - Create a matrix using the same nonzero pattern as the original matrix, 6942ef1f0ffSBarry Smith with zeros for the numerical values 6952ef1f0ffSBarry Smith . `MAT_COPY_VALUES` - Create a matrix with the same nonzero pattern as the original matrix 6962ef1f0ffSBarry Smith and with the same numerical values. 6972ef1f0ffSBarry Smith - `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix 6982ef1f0ffSBarry Smith and does not copy it, using zeros for the numerical values. The parent and 6992ef1f0ffSBarry Smith child matrices will share their index (i and j) arrays, and you cannot 7002ef1f0ffSBarry Smith insert new nonzero entries into either matrix 7010018da39SRichard Tran Mills 70287497f52SBarry Smith Note: 70387497f52SBarry Smith Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in 70487497f52SBarry Smith this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified. 70570dcbbb9SBarry Smith 7062ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatDuplicate()` 707d91e6319SBarry Smith E*/ 7089371c9d4SSatish Balay typedef enum { 7099371c9d4SSatish Balay MAT_DO_NOT_COPY_VALUES, 7109371c9d4SSatish Balay MAT_COPY_VALUES, 7119371c9d4SSatish Balay MAT_SHARE_NONZERO_PATTERN 7129371c9d4SSatish Balay } MatDuplicateOption; 7132e8a6d31SBarry Smith 71419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *); 715014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *); 71694a9d846SBarry Smith 717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure); 718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer); 719014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *); 720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *); 721014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *); 722014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *); 723014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *); 724b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *); 725b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *); 726014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *); 727014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer); 7287b80b807SBarry Smith 7291a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7301a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7311a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7321a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 733d4fbbf0eSBarry Smith 734d91e6319SBarry Smith /*S 73587497f52SBarry Smith MatInfo - Context of matrix information, used with `MatGetInfo()` 736d91e6319SBarry Smith 737d91e6319SBarry Smith Level: intermediate 738d91e6319SBarry Smith 7392ef1f0ffSBarry Smith Fortran Note: 7402ef1f0ffSBarry Smith Information is stored as a double-precision array of dimension `MAT_INFO_SIZE` 7412ef1f0ffSBarry Smith 7422ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatGetInfo()`, `MatInfoType` 743d91e6319SBarry Smith S*/ 7444e220ebcSLois Curfman McInnes typedef struct { 745b0a32e0cSBarry Smith PetscLogDouble block_size; /* block size */ 746b0a32e0cSBarry Smith PetscLogDouble nz_allocated, nz_used, nz_unneeded; /* number of nonzeros */ 747b0a32e0cSBarry Smith PetscLogDouble memory; /* memory allocated */ 748b0a32e0cSBarry Smith PetscLogDouble assemblies; /* number of matrix assemblies called */ 749b0a32e0cSBarry Smith PetscLogDouble mallocs; /* number of mallocs during MatSetValues() */ 750b0a32e0cSBarry Smith PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */ 751b0a32e0cSBarry Smith PetscLogDouble factor_mallocs; /* number of mallocs during factorization */ 7524e220ebcSLois Curfman McInnes } MatInfo; 7534e220ebcSLois Curfman McInnes 754d9274352SBarry Smith /*E 755d9274352SBarry Smith MatInfoType - Indicates if you want information about the local part of the matrix, 756d9274352SBarry Smith the entire parallel matrix or the maximum over all the local parts. 757d9274352SBarry Smith 758d9274352SBarry Smith Level: beginner 759d9274352SBarry Smith 7602ef1f0ffSBarry Smith Values: 7612ef1f0ffSBarry Smith + `MAT_LOCAL` - values for each MPI process part of the matrix 7622ef1f0ffSBarry Smith . `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes 7632ef1f0ffSBarry Smith - `MAT_GLOBAL_SUM` - sum of each value over all MPI processes 764d9274352SBarry Smith 7652ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatGetInfo()`, `MatInfo` 766d9274352SBarry Smith E*/ 7679371c9d4SSatish Balay typedef enum { 7689371c9d4SSatish Balay MAT_LOCAL = 1, 7699371c9d4SSatish Balay MAT_GLOBAL_MAX = 2, 7709371c9d4SSatish Balay MAT_GLOBAL_SUM = 3 7719371c9d4SSatish Balay } MatInfoType; 772014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *); 773014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec); 774014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]); 775014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]); 776014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]); 777014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]); 778014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec); 779014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *); 7807fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *); 7817fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat); 782014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *); 783014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *); 784014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec); 785014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode); 786a52676ecSHong Zhang 787014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *); 788014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *); 789014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *); 790014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 791014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 792e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 793e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 794a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 795a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 796cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 7974222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 798447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 79986919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *); 8007b80b807SBarry Smith 801014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *); 802014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *); 803857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *); 804857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *); 805857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *); 806857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *); 807857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *); 808857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *); 809857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *); 810014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat); 8111b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat); 812014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 813014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec); 814014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 815014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec); 8187b80b807SBarry Smith 819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *); 820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *); 821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *); 822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **); 823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *); 824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **); 825566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *); 8265ef9f2a5SBarry Smith 8277dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 828d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatrices() (since version 3.8)") static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 829d71ae5a4SJacob Faibussowitsch { 8309371c9d4SSatish Balay return MatCreateSubMatrices(mat, n, irow, icol, scall, submat); 8319371c9d4SSatish Balay } 8327dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 833d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatricesMPI() (since version 3.8)") static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 834d71ae5a4SJacob Faibussowitsch { 8359371c9d4SSatish Balay return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat); 8369371c9d4SSatish Balay } 837014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]); 838df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]); 8397dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *); 840d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatrix() (since version 3.8)") static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat) 841d71ae5a4SJacob Faibussowitsch { 8429371c9d4SSatish Balay return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat); 8439371c9d4SSatish Balay } 844014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *); 845014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *); 846014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *); 847014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *); 8487b80b807SBarry Smith 849014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *); 850014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *); 851014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat); 852014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *); 8538a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *); 854014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *); 855ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *); 856f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *); 857014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *); 858014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]); 8598efafbd8SBarry Smith 860014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt); 861aa1e27eaSFande Kong PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov); 862d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool); 8637b80b807SBarry Smith 864014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 86522440eb1SKris Buschelman 8667bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 8672df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 8687bab7c10SHong Zhang 869014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *); 870014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *); 87122440eb1SKris Buschelman 872014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 873014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *); 874bc011b1eSHong Zhang 875014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure); 876014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure); 8771c741599SHong Zhang 878014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar); 879014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar); 8807b80b807SBarry Smith 881014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping); 882014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 883a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *); 88481fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout); 885014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 886014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 887014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 888014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 889e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 890014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 891014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 892052efed2SBarry Smith 893014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt); 894014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *); 89590f02eecSBarry Smith 896014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec); 897014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec); 898014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec); 89930b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *); 90030b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *); 90130b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *); 9022a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *); 903d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateVecs() (since version 3.6)") static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y) 904d71ae5a4SJacob Faibussowitsch { 9059371c9d4SSatish Balay return MatCreateVecs(mat, x, y); 9069371c9d4SSatish Balay } 90753cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *); 908014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *); 909014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *); 9103a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *); 9119c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *); 912bd481603SBarry Smith 913bd481603SBarry Smith /*MC 9141620fd73SBarry Smith MatSetValue - Set a single entry into a matrix. 9151620fd73SBarry Smith 91620f4b53cSBarry Smith Not Collective 9171620fd73SBarry Smith 918a9834a7dSSatish Balay Synopsis: 919a9834a7dSSatish Balay #include <petscmat.h> 920a9834a7dSSatish Balay PetscErrorCode MatSetValue(Mat m,PetscInt row,PetscInt col,PetscScalar value,InsertMode mode) 921a9834a7dSSatish Balay 9221620fd73SBarry Smith Input Parameters: 9231620fd73SBarry Smith + m - the matrix 9241620fd73SBarry Smith . row - the row location of the entry 9251620fd73SBarry Smith . col - the column location of the entry 9261620fd73SBarry Smith . value - the value to insert 92787497f52SBarry Smith - mode - either `INSERT_VALUES` or `ADD_VALUES` 9281620fd73SBarry Smith 9291620fd73SBarry Smith Level: beginner 9301620fd73SBarry Smith 9312ef1f0ffSBarry Smith Note: 9322ef1f0ffSBarry Smith For efficiency one should use `MatSetValues()` and set several values simultaneously. 9332ef1f0ffSBarry Smith 9342ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `InsertMode`, `MatGetValue()`, `MatSetValues()`, 9352ef1f0ffSBarry Smith `MatSetValueLocal()`, `MatSetValuesLocal()` 9361620fd73SBarry Smith M*/ 937d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValue(Mat v, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 938d71ae5a4SJacob Faibussowitsch { 9399371c9d4SSatish Balay return MatSetValues(v, 1, &i, 1, &j, &va, mode); 9409371c9d4SSatish Balay } 9411620fd73SBarry Smith 942e5e5a7b5SPatrick Sanan /*@C 943e5e5a7b5SPatrick Sanan MatGetValue - Gets a single value from a matrix 9441620fd73SBarry Smith 945e5e5a7b5SPatrick Sanan Not Collective; can only return a value owned by the given process 946e5e5a7b5SPatrick Sanan 947e5e5a7b5SPatrick Sanan Input Parameters: 948e5e5a7b5SPatrick Sanan + mat - the matrix 949e5e5a7b5SPatrick Sanan . row - the row location of the entry 950e5e5a7b5SPatrick Sanan - col - the column location of the entry 951e5e5a7b5SPatrick Sanan 952e5e5a7b5SPatrick Sanan Output Parameter: 953e5e5a7b5SPatrick Sanan . va - the value 954e5e5a7b5SPatrick Sanan 9552ef1f0ffSBarry Smith Level: advanced 9562ef1f0ffSBarry Smith 957e5e5a7b5SPatrick Sanan Notes: 9582ef1f0ffSBarry Smith The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd` before this call 9592ef1f0ffSBarry Smith 96087497f52SBarry Smith For efficiency one should use `MatGetValues()` and get several values simultaneously. 961e5e5a7b5SPatrick Sanan 96287497f52SBarry Smith See notes for `MatGetValues()`. 963e5e5a7b5SPatrick Sanan 9642ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()` 965e5e5a7b5SPatrick Sanan @*/ 966d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va) 967d71ae5a4SJacob Faibussowitsch { 9689371c9d4SSatish Balay return MatGetValues(mat, 1, &row, 1, &col, va); 9699371c9d4SSatish Balay } 970e5e5a7b5SPatrick Sanan 971e5e5a7b5SPatrick Sanan /*MC 9722ef1f0ffSBarry Smith MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes. 973e5e5a7b5SPatrick Sanan 974e5e5a7b5SPatrick Sanan Not Collective 975e5e5a7b5SPatrick Sanan 976e5e5a7b5SPatrick Sanan Input Parameters: 977e5e5a7b5SPatrick Sanan + m - the matrix 978e5e5a7b5SPatrick Sanan . row - the row location of the entry 979e5e5a7b5SPatrick Sanan . col - the column location of the entry 980e5e5a7b5SPatrick Sanan . value - the value to insert 98187497f52SBarry Smith - mode - either `INSERT_VALUES` or `ADD_VALUES` 982e5e5a7b5SPatrick Sanan 9832ef1f0ffSBarry Smith Level: intermediate 9842ef1f0ffSBarry Smith 985e5e5a7b5SPatrick Sanan Notes: 98687497f52SBarry Smith For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously. 987e5e5a7b5SPatrick Sanan 98887497f52SBarry Smith See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used. 989e5e5a7b5SPatrick Sanan 9902ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatSetValue()`, `MatSetValuesLocal()` 991e5e5a7b5SPatrick Sanan M*/ 992d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValueLocal(Mat v, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 993d71ae5a4SJacob Faibussowitsch { 9949371c9d4SSatish Balay return MatSetValuesLocal(v, 1, &i, 1, &j, &va, mode); 9959371c9d4SSatish Balay } 9961620fd73SBarry Smith 9971620fd73SBarry Smith /*MC 998d0609cedSBarry Smith MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per 999bd481603SBarry Smith row in a matrix providing the data that one can use to correctly preallocate the matrix. 1000bd481603SBarry Smith 1001bd481603SBarry Smith Synopsis: 1002aaa7dc30SBarry Smith #include <petscmat.h> 1003d0609cedSBarry Smith PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz) 1004bd481603SBarry Smith 1005d083f849SBarry Smith Collective 1006bd481603SBarry Smith 1007bd481603SBarry Smith Input Parameters: 1008bd481603SBarry Smith + comm - the communicator that will share the eventually allocated matrix 1009859fcb39SBarry Smith . nrows - the number of LOCAL rows in the matrix 1010859fcb39SBarry Smith - ncols - the number of LOCAL columns in the matrix 1011bd481603SBarry Smith 1012bd481603SBarry Smith Output Parameters: 1013bd481603SBarry Smith + dnz - the array that will be passed to the matrix preallocation routines 1014a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1015bd481603SBarry Smith 10162ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1017bd481603SBarry Smith 1018bd481603SBarry Smith Notes: 10192ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 10202ef1f0ffSBarry Smith the use of this routine 10212ef1f0ffSBarry Smith 1022d0609cedSBarry Smith This is a macro that handles its own error checking, it does not return an error code. 1023d0609cedSBarry Smith 10242ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1025bd481603SBarry Smith 10262ef1f0ffSBarry Smith Developer Note: 10272ef1f0ffSBarry Smith This is a MACRO not a function because it has a leading { that is closed by `PetscPreallocateFinalize()`. 1028bd481603SBarry Smith 10292ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1030db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 1031bd481603SBarry Smith M*/ 10329371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \ 10339371c9d4SSatish Balay do { \ 10343ba16761SJacob Faibussowitsch PetscInt __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \ 10353ba16761SJacob Faibussowitsch PetscInt PETSC_UNUSED __start; \ 10369566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \ 10379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \ 10389371c9d4SSatish Balay __start = __end - __ncols; \ 10399371c9d4SSatish Balay (void)__start; \ 10409566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \ 10415f80ce2aSJacob Faibussowitsch __rstart -= __nrows 10427c922b88SBarry Smith 1043d0609cedSBarry Smith #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO("GCC warning \"Use MatPreallocateBegin() (since version 3.18)\"") MatPreallocateBegin(__VA_ARGS__) 1044d0609cedSBarry Smith 1045bd481603SBarry Smith /*MC 1046bd481603SBarry Smith MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1047bd481603SBarry Smith inserted using a local number of the rows and columns 1048bd481603SBarry Smith 1049bd481603SBarry Smith Synopsis: 1050aaa7dc30SBarry Smith #include <petscmat.h> 1051c1ac3661SBarry Smith PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1052bd481603SBarry Smith 1053bd481603SBarry Smith Not Collective 1054bd481603SBarry Smith 1055bd481603SBarry Smith Input Parameters: 1056784ac674SJed Brown + map - the row mapping from local numbering to global numbering 1057bd481603SBarry Smith . nrows - the number of rows indicated 10581d73ed98SBarry Smith . rows - the indices of the rows 1059784ac674SJed Brown . cmap - the column mapping from local to global numbering 1060bd481603SBarry Smith . ncols - the number of columns in the matrix 1061bd481603SBarry Smith . cols - the columns indicated 1062bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1063a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1064bd481603SBarry Smith 10652ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1066bd481603SBarry Smith 1067bd481603SBarry Smith Notes: 10682ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 10692ef1f0ffSBarry Smith the use of this routine 1070bd481603SBarry Smith 10712ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1072bd481603SBarry Smith 10732ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1074db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()` 1075bd481603SBarry Smith M*/ 107694bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 10779371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1078c4f061fbSSatish Balay 1079bd481603SBarry Smith /*MC 1080c1154cd5SBarry Smith MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1081c1154cd5SBarry Smith inserted using a local number of the rows and columns. This version removes any duplicate columns in cols 1082c1154cd5SBarry Smith 1083c1154cd5SBarry Smith Synopsis: 1084c1154cd5SBarry Smith #include <petscmat.h> 1085c1154cd5SBarry Smith PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1086c1154cd5SBarry Smith 1087c1154cd5SBarry Smith Not Collective 1088c1154cd5SBarry Smith 1089c1154cd5SBarry Smith Input Parameters: 1090c1154cd5SBarry Smith + map - the row mapping from local numbering to global numbering 1091c1154cd5SBarry Smith . nrows - the number of rows indicated 1092c1154cd5SBarry Smith . rows - the indices of the rows (these values are mapped to the global values) 1093c1154cd5SBarry Smith . cmap - the column mapping from local to global numbering 1094c1154cd5SBarry Smith . ncols - the number of columns in the matrix (this value will be changed if duplicate columns are found) 1095c1154cd5SBarry Smith . cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed) 1096c1154cd5SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1097a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1098c1154cd5SBarry Smith 10992ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1100c1154cd5SBarry Smith 1101c1154cd5SBarry Smith Notes: 11022ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11032ef1f0ffSBarry Smith the use of this routine 1104c1154cd5SBarry Smith 11052ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1106c1154cd5SBarry Smith 11072ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1108db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1109c1154cd5SBarry Smith M*/ 111094bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 11119371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1112c1154cd5SBarry Smith 1113c1154cd5SBarry Smith /*MC 1114d6e23781SBarry Smith MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1115bd481603SBarry Smith inserted using a local number of the rows and columns 1116bd481603SBarry Smith 1117bd481603SBarry Smith Synopsis: 1118aaa7dc30SBarry Smith #include <petscmat.h> 1119d6e23781SBarry Smith PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1120d6e23781SBarry Smith 1121d6e23781SBarry Smith Not Collective 1122d6e23781SBarry Smith 1123d6e23781SBarry Smith Input Parameters: 1124d6e23781SBarry Smith + map - the row mapping from local numbering to global numbering 1125d6e23781SBarry Smith . nrows - the number of rows indicated 1126d6e23781SBarry Smith . rows - the indices of the rows 1127d6e23781SBarry Smith . cmap - the column mapping from local to global numbering 1128d6e23781SBarry Smith . ncols - the number of columns in the matrix 1129d6e23781SBarry Smith . cols - the columns indicated 1130d6e23781SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1131a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1132d6e23781SBarry Smith 11332ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1134d6e23781SBarry Smith 1135d6e23781SBarry Smith Notes: 11362ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11372ef1f0ffSBarry Smith the use of this routine 1138d6e23781SBarry Smith 11392ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1140d6e23781SBarry Smith 11412ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1142db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()` 1143d6e23781SBarry Smith M*/ 114494bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 11459371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1146d6e23781SBarry Smith 1147d6e23781SBarry Smith /*MC 1148d6e23781SBarry Smith MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1149d6e23781SBarry Smith inserted using a local number of the rows and columns 1150d6e23781SBarry Smith 1151d6e23781SBarry Smith Synopsis: 1152d6e23781SBarry Smith #include <petscmat.h> 1153d6e23781SBarry Smith PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1154bd481603SBarry Smith 1155bd481603SBarry Smith Not Collective 1156bd481603SBarry Smith 1157bd481603SBarry Smith Input Parameters: 1158bd481603SBarry Smith + map - the mapping between local numbering and global numbering 1159bd481603SBarry Smith . nrows - the number of rows indicated 11601d73ed98SBarry Smith . rows - the indices of the rows 1161bd481603SBarry Smith . ncols - the number of columns in the matrix 1162bd481603SBarry Smith . cols - the columns indicated 1163bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1164a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1165bd481603SBarry Smith 11662ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1167bd481603SBarry Smith 1168bd481603SBarry Smith Notes: 11692ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11702ef1f0ffSBarry Smith the use of this routine 1171bd481603SBarry Smith 11722ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1173bd481603SBarry Smith 11742ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()` 1175db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1176bd481603SBarry Smith M*/ 117794bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \ 11789371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));) 1179e83a5d19SLisandro Dalcin 1180bd481603SBarry Smith /*MC 1181bd481603SBarry Smith MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1182bd481603SBarry Smith inserted using a local number of the rows and columns 1183bd481603SBarry Smith 1184bd481603SBarry Smith Synopsis: 1185aaa7dc30SBarry Smith #include <petscmat.h> 1186c1ac3661SBarry Smith PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1187bd481603SBarry Smith 1188bd481603SBarry Smith Not Collective 1189bd481603SBarry Smith 1190bd481603SBarry Smith Input Parameters: 119164075487SBarry Smith + row - the row 1192bd481603SBarry Smith . ncols - the number of columns in the matrix 1193a50f8bf6SHong Zhang - cols - the columns indicated 1194a50f8bf6SHong Zhang 1195a50f8bf6SHong Zhang Output Parameters: 1196a50f8bf6SHong Zhang + dnz - the array that will be passed to the matrix preallocation routines 1197a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1198bd481603SBarry Smith 11992ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1200bd481603SBarry Smith 1201bd481603SBarry Smith Notes: 12022ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12032ef1f0ffSBarry Smith the use of this routine 1204bd481603SBarry Smith 12052ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1206bd481603SBarry Smith 1207d0609cedSBarry Smith This is a MACRO not a function because it uses variables declared in MatPreallocateBegin(). 12081620fd73SBarry Smith 12092ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1210db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1211bd481603SBarry Smith M*/ 12129371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \ 12139371c9d4SSatish Balay PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \ 121464075487SBarry Smith if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \ 1215a6042fd4SStefano Zampini else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 12169371c9d4SSatish Balay }) 12177c922b88SBarry Smith 1218bd481603SBarry Smith /*MC 1219d6e23781SBarry Smith MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1220bd481603SBarry Smith inserted using a local number of the rows and columns 1221bd481603SBarry Smith 1222bd481603SBarry Smith Synopsis: 1223aaa7dc30SBarry Smith #include <petscmat.h> 1224d6e23781SBarry Smith PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1225bd481603SBarry Smith 1226bd481603SBarry Smith Not Collective 1227bd481603SBarry Smith 1228bd481603SBarry Smith Input Parameters: 1229bd481603SBarry Smith + nrows - the number of rows indicated 12301d73ed98SBarry Smith . rows - the indices of the rows 1231bd481603SBarry Smith . ncols - the number of columns in the matrix 1232bd481603SBarry Smith . cols - the columns indicated 1233bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1234a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1235bd481603SBarry Smith 12362ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1237bd481603SBarry Smith 1238bd481603SBarry Smith Notes: 12392ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12402ef1f0ffSBarry Smith the use of this routine 1241bd481603SBarry Smith 12422ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1243bd481603SBarry Smith 1244d0609cedSBarry Smith This is a MACRO not a function because it uses variables declared in MatPreallocateBegin(). 12451620fd73SBarry Smith 12462ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`, 1247db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1248bd481603SBarry Smith M*/ 124994bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \ 12509371c9d4SSatish Balay PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \ 1251d3d32019SBarry Smith if (cols[__i] >= __end) onz[row - __rstart]++; \ 1252a6042fd4SStefano Zampini else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 12539371c9d4SSatish Balay }) 1254d3d32019SBarry Smith 1255bd481603SBarry Smith /*MC 1256a6042fd4SStefano Zampini MatPreallocateLocation - An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists 125716371a99SBarry Smith 125816371a99SBarry Smith Synopsis: 1259aaa7dc30SBarry Smith #include <petscmat.h> 126016371a99SBarry Smith PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz) 126116371a99SBarry Smith 126216371a99SBarry Smith Not Collective 126316371a99SBarry Smith 126416371a99SBarry Smith Input Parameters: 1265a2b725a8SWilliam Gropp + A - matrix 126616371a99SBarry Smith . row - row where values exist (must be local to this process) 126716371a99SBarry Smith . ncols - number of columns 126816371a99SBarry Smith . cols - columns with nonzeros 126916371a99SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1270a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 127116371a99SBarry Smith 12722ef1f0ffSBarry Smith Level: deprecated (since v3.19) 127316371a99SBarry Smith 127416371a99SBarry Smith Notes: 12752ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12762ef1f0ffSBarry Smith the use of this routine 127716371a99SBarry Smith 12782ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 127916371a99SBarry Smith 128016371a99SBarry Smith This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines. 128116371a99SBarry Smith 12822ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1283db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 128416371a99SBarry Smith M*/ 1285d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz)) 128616371a99SBarry Smith 128716371a99SBarry Smith /*MC 1288d0609cedSBarry Smith MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per 1289bd481603SBarry Smith row in a matrix providing the data that one can use to correctly preallocate the matrix. 1290bd481603SBarry Smith 1291bd481603SBarry Smith Synopsis: 1292aaa7dc30SBarry Smith #include <petscmat.h> 1293d0609cedSBarry Smith PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz) 1294bd481603SBarry Smith 1295d083f849SBarry Smith Collective 1296bd481603SBarry Smith 1297bd481603SBarry Smith Input Parameters: 129816371a99SBarry Smith + dnz - the array that was be passed to the matrix preallocation routines 1299a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1300bd481603SBarry Smith 13012ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1302bd481603SBarry Smith 1303bd481603SBarry Smith Notes: 13042ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 13052ef1f0ffSBarry Smith the use of this routine 1306d0609cedSBarry Smith 13072ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1308bd481603SBarry Smith 13092ef1f0ffSBarry Smith Developer Note: 1310d0609cedSBarry Smith This is a MACRO not a function because it closes the { started in MatPreallocateBegin(). 13111620fd73SBarry Smith 13122ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1313db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 1314bd481603SBarry Smith M*/ 13159371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \ 13169371c9d4SSatish Balay PetscCall(PetscFree2(dnz, onz)); \ 13179371c9d4SSatish Balay } \ 13189371c9d4SSatish Balay while (0) 1319d0609cedSBarry Smith 1320d0609cedSBarry Smith #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO("GCC warning \"Use MatPreallocateEnd() (since version 3.18)\"") MatPreallocateEnd(__VA_ARGS__) 13217c922b88SBarry Smith 13227b80b807SBarry Smith /* Routines unique to particular data structures */ 1323014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *); 1324698d4c6aSKris Buschelman 1325014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *); 1326014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *); 1327698d4c6aSKris Buschelman 1328014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]); 1329014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]); 1330014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1331014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1332014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1333014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool); 13347b80b807SBarry Smith 1335a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4 1336a96a251dSBarry Smith 1337014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1338014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1339014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]); 134019b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt); 1341273d9f13SBarry Smith 1342014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1343014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1344014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1345014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1346014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1347014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1348014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1349014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]); 1350b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *); 1351252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *); 1352014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]); 1353014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]); 13549230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 13559230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 1356014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *); 1357273d9f13SBarry Smith 135849a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *); 1359ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt); 1360d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatDenseSetLDA() (since version 3.14)") static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda) 1361d71ae5a4SJacob Faibussowitsch { 13629371c9d4SSatish Balay return MatDenseSetLDA(A, lda); 13639371c9d4SSatish Balay } 1364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *); 13651b807ce4Svictorle 1366621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1367621e819fSSatish Balay 1368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat); 1369014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat); 13702e8a6d31SBarry Smith 1371014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *); 13727cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *); 13737b80b807SBarry Smith /* 13747b80b807SBarry Smith These routines are not usually accessed directly, rather solving is 137594b7f48cSBarry Smith done through the KSP and PC interfaces. 13767b80b807SBarry Smith */ 13777b80b807SBarry Smith 137876bdecfbSBarry Smith /*J 13792ef1f0ffSBarry Smith MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used 13802ef1f0ffSBarry Smith to reduce fill in sparse factorizations. 1381d9274352SBarry Smith 1382d9274352SBarry Smith Level: beginner 1383d9274352SBarry Smith 13842c7c0729SBarry Smith Notes: 13852ef1f0ffSBarry Smith If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external package called utilizes one 13862ef1f0ffSBarry Smith in the external the factorization package 13872c7c0729SBarry Smith 13882ef1f0ffSBarry Smith There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()` 13892ef1f0ffSBarry Smith 13902ef1f0ffSBarry Smith Developer Note: 13912ef1f0ffSBarry Smith This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning` 13922ef1f0ffSBarry Smith 13932ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`, 13942ef1f0ffSBarry Smith `PCFactorSetOrderingType()` 139576bdecfbSBarry Smith J*/ 139619fd82e9SBarry Smith typedef const char *MatOrderingType; 13972692d6eeSBarry Smith #define MATORDERINGNATURAL "natural" 13982692d6eeSBarry Smith #define MATORDERINGND "nd" 13992692d6eeSBarry Smith #define MATORDERING1WD "1wd" 14002692d6eeSBarry Smith #define MATORDERINGRCM "rcm" 14012692d6eeSBarry Smith #define MATORDERINGQMD "qmd" 14022692d6eeSBarry Smith #define MATORDERINGROWLENGTH "rowlength" 1403510184a7SJed Brown #define MATORDERINGWBM "wbm" 1404fc1bef75SJed Brown #define MATORDERINGSPECTRAL "spectral" 1405312e372aSBarry Smith #define MATORDERINGAMD "amd" /* only works if UMFPACK is installed with PETSc */ 1406048412efSPablo Brubeck #define MATORDERINGMETISND "metisnd" /* only works if METIS is installed with PETSc */ 14079bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */ 14082c7c0729SBarry Smith #define MATORDERINGEXTERNAL "external" /* uses an ordering type internal to the factorization package */ 1409b12f92e5SBarry Smith 141019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrdering(Mat, MatOrderingType, IS *, IS *); 1411140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrderingList(PetscFunctionList *); 1412bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *)); 1413140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList; 1414d4fbbf0eSBarry Smith 1415013e2dc7SBarry Smith #include "petscmatcoarsen.h" 1416013e2dc7SBarry Smith 1417014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS); 1418fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *); 1419a2ce50c7SBarry Smith 14204ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *); 14214ac6704cSBarry Smith 1422d91e6319SBarry Smith /*S 14232ef1f0ffSBarry Smith MatFactorShiftType - Type of numeric shift used for factorizations 1424d90ac83dSHong Zhang 14252ef1f0ffSBarry Smith Values: 14262ef1f0ffSBarry Smith + `MAT_SHIFT_NONE` - do not shift the matrix diagonal entries 14272ef1f0ffSBarry Smith . `MAT_SHIFT_NONZERO` - shift the entries to be non-zero 14282ef1f0ffSBarry Smith . `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite 14292ef1f0ffSBarry Smith - `MAT_SHIFT_INBLOCKS` - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ` 1430d90ac83dSHong Zhang 14312ef1f0ffSBarry Smith Level: intermediate 14322ef1f0ffSBarry Smith 14332ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()` 1434d90ac83dSHong Zhang S*/ 14359371c9d4SSatish Balay typedef enum { 14369371c9d4SSatish Balay MAT_SHIFT_NONE, 14379371c9d4SSatish Balay MAT_SHIFT_NONZERO, 14389371c9d4SSatish Balay MAT_SHIFT_POSITIVE_DEFINITE, 14399371c9d4SSatish Balay MAT_SHIFT_INBLOCKS 14409371c9d4SSatish Balay } MatFactorShiftType; 14416a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[]; 14425e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[]; 1443d90ac83dSHong Zhang 1444d90ac83dSHong Zhang /*S 1445ec5066bdSBarry Smith MatFactorError - indicates what type of error was generated in a matrix factorization 14469aa7eafdSHong Zhang 14472ef1f0ffSBarry Smith Values: 14482ef1f0ffSBarry Smith + `MAT_FACTOR_NOERROR` - there was no error during the factorization 14492ef1f0ffSBarry Smith . `MAT_FACTOR_STRUCT_ZEROPIVOT` - there was a missing entry in a diagonal location of the matrix 14502ef1f0ffSBarry Smith . `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization 14512ef1f0ffSBarry Smith . `MAT_FACTOR_OUTMEMORY` - the factorization has run out of memory 14522ef1f0ffSBarry Smith - `MAT_FACTOR_OTHER` - some other error has occurred. 14539aa7eafdSHong Zhang 14542ef1f0ffSBarry Smith Level: intermediate 145500e125f8SBarry Smith 14562ef1f0ffSBarry Smith Note: 14572ef1f0ffSBarry Smith When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason` 14582ef1f0ffSBarry Smith 14592ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`, 14602ef1f0ffSBarry Smith `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason` 14619aa7eafdSHong Zhang S*/ 14629371c9d4SSatish Balay typedef enum { 14639371c9d4SSatish Balay MAT_FACTOR_NOERROR, 14649371c9d4SSatish Balay MAT_FACTOR_STRUCT_ZEROPIVOT, 14659371c9d4SSatish Balay MAT_FACTOR_NUMERIC_ZEROPIVOT, 14669371c9d4SSatish Balay MAT_FACTOR_OUTMEMORY, 14679371c9d4SSatish Balay MAT_FACTOR_OTHER 14689371c9d4SSatish Balay } MatFactorError; 14699aa7eafdSHong Zhang 147000e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *); 1471b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat); 14727b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *); 147300e125f8SBarry Smith 14749aa7eafdSHong Zhang /*S 1475422a814eSBarry Smith MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization 1476b00f7748SHong Zhang 1477b00f7748SHong Zhang Level: developer 1478b00f7748SHong Zhang 14792ef1f0ffSBarry Smith Note: 14802ef1f0ffSBarry Smith You can use `MatFactorInfoInitialize()` to set default values. 1481b00f7748SHong Zhang 14822ef1f0ffSBarry Smith Fortran Note: 14832ef1f0ffSBarry Smith The data is available in a double precision arrays of size `MAT_FACTORINFO_SIZE` 14842ef1f0ffSBarry Smith 14852ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, 14862ef1f0ffSBarry Smith `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()` 1487b00f7748SHong Zhang S*/ 1488b00f7748SHong Zhang typedef struct { 148915e8a5b3SHong Zhang PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */ 149085317021SBarry Smith PetscReal usedt; 149115e8a5b3SHong Zhang PetscReal dt; /* drop tolerance */ 1492b00f7748SHong Zhang PetscReal dtcol; /* tolerance for pivoting */ 149315e8a5b3SHong Zhang PetscReal dtcount; /* maximum nonzeros to be allowed per row */ 149467e28bfeSBarry Smith PetscReal fill; /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */ 1495348344bbSBarry Smith PetscReal levels; /* ICC/ILU(levels) */ 1496bcd9e38bSBarry Smith PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 1497bcd9e38bSBarry Smith factorization may be faster if do not pivot */ 149815e8a5b3SHong Zhang PetscReal zeropivot; /* pivot is called zero if less than this */ 1499f4db908eSBarry Smith PetscReal shifttype; /* type of shift added to matrix factor to prevent zero pivots */ 1500f4db908eSBarry Smith PetscReal shiftamount; /* how large the shift is */ 150115e8a5b3SHong Zhang } MatFactorInfo; 1502ffa6d0a5SLois Curfman McInnes 1503014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *); 15049a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *); 15059a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15069a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *); 15079a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *); 15089a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *); 15099a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 15109a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 15119a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15129a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *); 15139a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *); 15143f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *); 15153f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15163f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *); 1517014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *); 1518014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec); 1519014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec); 1520014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec); 1521014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec); 1522014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec); 1523014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec); 1524014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs); 15257c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat); 15267c2f51b8SStefano Zampini 15279371c9d4SSatish Balay typedef enum { 15289371c9d4SSatish Balay MAT_FACTOR_SCHUR_UNFACTORED, 15299371c9d4SSatish Balay MAT_FACTOR_SCHUR_FACTORED, 15309371c9d4SSatish Balay MAT_FACTOR_SCHUR_INVERTED 15319371c9d4SSatish Balay } MatFactorSchurStatus; 15328e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS); 15337c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 15347c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus); 15355a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat); 15367c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 15375a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec); 15385a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec); 15396dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat); 1540bb5a7306SBarry Smith 15418a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat); 1542d91e6319SBarry Smith /*E 1543d91e6319SBarry Smith MatSORType - What type of (S)SOR to perform 1544bb1eb677SSatish Balay 15452ef1f0ffSBarry Smith Values: 15462ef1f0ffSBarry Smith + `SOR_FORWARD_SWEEP` - do a sweep from the first row of the matrix to the last 15472ef1f0ffSBarry Smith . `SOR_BACKWARD_SWEEP` - do a sweep from the last row to the first 15482ef1f0ffSBarry Smith . `SOR_SYMMETRIC_SWEEP` - do a sweep from the first row to the last and then back to the first 15492ef1f0ffSBarry Smith . `SOR_LOCAL_FORWARD_SWEEP` - each MPI rank does its own forward sweep with no communication 15502ef1f0ffSBarry Smith . `SOR_LOCAL_BACKWARD_SWEEP` - each MPI rank does its own backward sweep with no communication 15512ef1f0ffSBarry Smith . `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI rank does its own symmetric sweep with no communication 15522ef1f0ffSBarry Smith . `SOR_ZERO_INITIAL_GUESS` - indicates the initial solution is zero so the sweep can avoid unneeded computation 15532ef1f0ffSBarry Smith . `SOR_EISENSTAT` - apply the Eisentat application of SOR, see `PCEISENSTAT` 15542ef1f0ffSBarry Smith . `SOR_APPLY_UPPER` - multiply by the upper triangular portion of the matrix 15552ef1f0ffSBarry Smith - `SOR_APPLY_LOWER` - multiply by the lower triangular portion of the matrix 15562ef1f0ffSBarry Smith 1557d91e6319SBarry Smith Level: beginner 1558d91e6319SBarry Smith 15592ef1f0ffSBarry Smith Note: 15602ef1f0ffSBarry Smith These may be bitwise ORd together 1561d9274352SBarry Smith 15622ef1f0ffSBarry Smith Developer Note: 15632ef1f0ffSBarry Smith Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below 1564d91e6319SBarry Smith 15652ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatSOR()` 1566d91e6319SBarry Smith E*/ 15679371c9d4SSatish Balay typedef enum { 15689371c9d4SSatish Balay SOR_FORWARD_SWEEP = 1, 15699371c9d4SSatish Balay SOR_BACKWARD_SWEEP = 2, 15709371c9d4SSatish Balay SOR_SYMMETRIC_SWEEP = 3, 15719371c9d4SSatish Balay SOR_LOCAL_FORWARD_SWEEP = 4, 15729371c9d4SSatish Balay SOR_LOCAL_BACKWARD_SWEEP = 8, 15739371c9d4SSatish Balay SOR_LOCAL_SYMMETRIC_SWEEP = 12, 15749371c9d4SSatish Balay SOR_ZERO_INITIAL_GUESS = 16, 15759371c9d4SSatish Balay SOR_EISENSTAT = 32, 15769371c9d4SSatish Balay SOR_APPLY_UPPER = 64, 15779371c9d4SSatish Balay SOR_APPLY_LOWER = 128 15789371c9d4SSatish Balay } MatSORType; 1579014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec); 15808ed539a5SBarry Smith 15817086a01eSPeter Brune /*S 15827086a01eSPeter Brune MatColoring - Object for managing the coloring of matrices. 15837086a01eSPeter Brune 15847086a01eSPeter Brune Level: beginner 15857086a01eSPeter Brune 1586ec5066bdSBarry Smith Notes: 158787497f52SBarry Smith Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 158887497f52SBarry Smith matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors). 1589ec5066bdSBarry Smith 159087497f52SBarry Smith Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This 15912ef1f0ffSBarry Smith same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices. 1592ec5066bdSBarry Smith 15932ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`, 15942ef1f0ffSBarry Smith `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`, 15952ef1f0ffSBarry Smith `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen` 15967086a01eSPeter Brune S*/ 1597d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring; 1598d4db15c4SBarry Smith 1599d4db15c4SBarry Smith /*J 1600d4db15c4SBarry Smith MatColoringType - String with the name of a PETSc matrix coloring 1601d9274352SBarry Smith 1602d9274352SBarry Smith Level: beginner 1603d9274352SBarry Smith 16042ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring` 160576bdecfbSBarry Smith J*/ 160619fd82e9SBarry Smith typedef const char *MatColoringType; 16075567d71aSPeter Brune #define MATCOLORINGJP "jp" 1608b9acb617SPeter Brune #define MATCOLORINGPOWER "power" 16092692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural" 16102692d6eeSBarry Smith #define MATCOLORINGSL "sl" 16112692d6eeSBarry Smith #define MATCOLORINGLF "lf" 16122692d6eeSBarry Smith #define MATCOLORINGID "id" 16138121bdceSPeter Brune #define MATCOLORINGGREEDY "greedy" 1614b12f92e5SBarry Smith 16158ac6da0aSPeter Brune /*E 16162ef1f0ffSBarry Smith MatColoringWeightType - Type of weight scheme used for the coloring algorithm 16178ac6da0aSPeter Brune 16182ef1f0ffSBarry Smith Values: 161987497f52SBarry Smith + `MAT_COLORING_RANDOM` - Random weights 162087497f52SBarry Smith . `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering. 162187497f52SBarry Smith - `MAT_COLORING_LF` - Last-first weighting. 16228ac6da0aSPeter Brune 16238ac6da0aSPeter Brune Level: intermediate 16248ac6da0aSPeter Brune 16252ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()` 16268ac6da0aSPeter Brune E*/ 16279371c9d4SSatish Balay typedef enum { 16289371c9d4SSatish Balay MAT_COLORING_WEIGHT_RANDOM, 16299371c9d4SSatish Balay MAT_COLORING_WEIGHT_LEXICAL, 16309371c9d4SSatish Balay MAT_COLORING_WEIGHT_LF, 16319371c9d4SSatish Balay MAT_COLORING_WEIGHT_SL 16329371c9d4SSatish Balay } MatColoringWeightType; 16338ac6da0aSPeter Brune 1634335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *); 1635d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *); 1636335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *); 1637335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer); 1638335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType); 1639335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring); 1640335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt); 1641335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *); 1642335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt); 1643335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *); 1644335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *); 1645335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring)); 1646014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *); 16478ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType); 1648c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *); 16498ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm); 1650bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring); 1651d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatColoringTest() (since version 3.10)") static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring) 1652d71ae5a4SJacob Faibussowitsch { 16539371c9d4SSatish Balay return MatColoringTest(matcoloring, iscoloring); 16549371c9d4SSatish Balay } 1655bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring); 1656639f9d9dSBarry Smith 1657d9274352SBarry Smith /*S 165887497f52SBarry Smith MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring 1659639f9d9dSBarry Smith 1660d9274352SBarry Smith Level: beginner 1661d9274352SBarry Smith 1662ec5066bdSBarry Smith Notes: 166387497f52SBarry Smith This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()` 1664ec5066bdSBarry Smith 16652ef1f0ffSBarry Smith The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object 16662ef1f0ffSBarry Smith 16672ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()` 1668d9274352SBarry Smith S*/ 1669e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring; 1670639f9d9dSBarry Smith 1671014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *); 1672014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *); 1673014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer); 1674014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *); 1675014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **); 1676014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal); 1677014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring); 1678d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *); 1679014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec); 1680edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]); 1681f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring); 1682f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt); 1683bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *); 1684b1683b59SHong Zhang 1685b1683b59SHong Zhang /*S 1686b9af6bddSHong Zhang MatTransposeColoring - Object for computing a sparse matrix product C=A*B^T via coloring 1687b1683b59SHong Zhang 16882ef1f0ffSBarry Smith Level: developer 1689b1683b59SHong Zhang 16902ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()` 1691b1683b59SHong Zhang S*/ 1692b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring; 1693b1683b59SHong Zhang 1694014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *); 1695014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat); 1696014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat); 1697014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *); 1698b1683b59SHong Zhang 1699d9274352SBarry Smith /*S 1700d9274352SBarry Smith MatPartitioning - Object for managing the partitioning of a matrix or graph 1701d9274352SBarry Smith 1702d9274352SBarry Smith Level: beginner 1703d9274352SBarry Smith 170487497f52SBarry Smith Note: 170587497f52SBarry Smith There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations 170687497f52SBarry Smith via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`) 1707ec5066bdSBarry Smith 1708ec5066bdSBarry Smith Developers Note: 17092ef1f0ffSBarry Smith It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed 1710ec5066bdSBarry Smith 17112ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`, 17122ef1f0ffSBarry Smith `MatCoarsenType`, `MatCoarsenType` 1713d9274352SBarry Smith S*/ 171491e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning; 1715d9274352SBarry Smith 171676bdecfbSBarry Smith /*J 17178f6c3df8SBarry Smith MatPartitioningType - String with the name of a PETSc matrix partitioning 1718d9274352SBarry Smith 1719d9274352SBarry Smith Level: beginner 17200d04baf8SBarry Smith dm 17212ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`, 17222ef1f0ffSBarry Smith `MatCoarsenType`, `MatCoarsenType` 172376bdecfbSBarry Smith J*/ 172419fd82e9SBarry Smith typedef const char *MatPartitioningType; 17252692d6eeSBarry Smith #define MATPARTITIONINGCURRENT "current" 1726aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE "average" 17272692d6eeSBarry Smith #define MATPARTITIONINGSQUARE "square" 17282692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis" 17292692d6eeSBarry Smith #define MATPARTITIONINGCHACO "chaco" 17302692d6eeSBarry Smith #define MATPARTITIONINGPARTY "party" 173150d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch" 173288d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch" 173371306c60Sjroman 1734014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *); 173519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType); 1736014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt); 1737014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat); 1738252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt); 1739014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]); 1740014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]); 1741ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool); 1742ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *); 1743014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *); 1744fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *); 1745668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS); 1746f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *); 1747014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *); 1748bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning)); 1749014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer); 1750fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]); 1751014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning); 175219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *); 1753ca161407SBarry Smith 175427538973SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part); 1755014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning); 1756014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *); 17570752156aSBarry Smith 17589371c9d4SSatish Balay typedef enum { 17599371c9d4SSatish Balay MP_CHACO_MULTILEVEL = 1, 17609371c9d4SSatish Balay MP_CHACO_SPECTRAL = 2, 17619371c9d4SSatish Balay MP_CHACO_LINEAR = 4, 17629371c9d4SSatish Balay MP_CHACO_RANDOM = 5, 17639371c9d4SSatish Balay MP_CHACO_SCATTERED = 6 17649371c9d4SSatish Balay } MPChacoGlobalType; 17656a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[]; 17669371c9d4SSatish Balay typedef enum { 17679371c9d4SSatish Balay MP_CHACO_KERNIGHAN = 1, 17689371c9d4SSatish Balay MP_CHACO_NONE = 2 17699371c9d4SSatish Balay } MPChacoLocalType; 17706a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[]; 17719371c9d4SSatish Balay typedef enum { 17729371c9d4SSatish Balay MP_CHACO_LANCZOS = 0, 17739371c9d4SSatish Balay MP_CHACO_RQI = 1 17749371c9d4SSatish Balay } MPChacoEigenType; 17756a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[]; 1776b6956c12SJose Roman 1777014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType); 1778014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *); 1779014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType); 1780014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *); 1781014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal); 1782014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType); 1783014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *); 1784014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal); 1785014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *); 1786014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt); 1787014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *); 178871306c60Sjroman 178971306c60Sjroman #define MP_PARTY_OPT "opt" 179071306c60Sjroman #define MP_PARTY_LIN "lin" 179171306c60Sjroman #define MP_PARTY_SCA "sca" 179271306c60Sjroman #define MP_PARTY_RAN "ran" 179371306c60Sjroman #define MP_PARTY_GBF "gbf" 179471306c60Sjroman #define MP_PARTY_GCF "gcf" 179571306c60Sjroman #define MP_PARTY_BUB "bub" 179671306c60Sjroman #define MP_PARTY_DEF "def" 1797014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *); 179871306c60Sjroman #define MP_PARTY_HELPFUL_SETS "hs" 179971306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl" 180071306c60Sjroman #define MP_PARTY_NONE "no" 1801014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *); 1802014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal); 1803014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool); 1804014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool); 180571306c60Sjroman 18069371c9d4SSatish Balay typedef enum { 18079371c9d4SSatish Balay MP_PTSCOTCH_DEFAULT, 18089371c9d4SSatish Balay MP_PTSCOTCH_QUALITY, 18099371c9d4SSatish Balay MP_PTSCOTCH_SPEED, 18109371c9d4SSatish Balay MP_PTSCOTCH_BALANCE, 18119371c9d4SSatish Balay MP_PTSCOTCH_SAFETY, 18129371c9d4SSatish Balay MP_PTSCOTCH_SCALABILITY 18139371c9d4SSatish Balay } MPPTScotchStrategyType; 18146a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[]; 1815e0f1cffaSJose Roman 1816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal); 1817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *); 1818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType); 1819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *); 182071306c60Sjroman 1821b43b03e9SMark F. Adams /* 18226294fa2bSFande Kong * hierarchical partitioning 18236294fa2bSFande Kong */ 18244e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *); 18254e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *); 18264e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt); 18274e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt); 18286294fa2bSFande Kong 1829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *); 1830591294e4SBarry Smith 18310752156aSBarry Smith /* 1832c786d857SStefano Zampini If you add entries here you must also add them to src/mat/f90-mod/petscmat.h 1833c786d857SStefano Zampini If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx 1834d4fbbf0eSBarry Smith */ 18359371c9d4SSatish Balay typedef enum { 18369371c9d4SSatish Balay MATOP_SET_VALUES = 0, 18371c1c02c0SLois Curfman McInnes MATOP_GET_ROW = 1, 18381c1c02c0SLois Curfman McInnes MATOP_RESTORE_ROW = 2, 18391c1c02c0SLois Curfman McInnes MATOP_MULT = 3, 18401c1c02c0SLois Curfman McInnes MATOP_MULT_ADD = 4, 18417c922b88SBarry Smith MATOP_MULT_TRANSPOSE = 5, 18427c922b88SBarry Smith MATOP_MULT_TRANSPOSE_ADD = 6, 18431c1c02c0SLois Curfman McInnes MATOP_SOLVE = 7, 18441c1c02c0SLois Curfman McInnes MATOP_SOLVE_ADD = 8, 18457c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE = 9, 18467c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE_ADD = 10, 18471c1c02c0SLois Curfman McInnes MATOP_LUFACTOR = 11, 18481c1c02c0SLois Curfman McInnes MATOP_CHOLESKYFACTOR = 12, 1849a714c06dSBarry Smith MATOP_SOR = 13, 18501c1c02c0SLois Curfman McInnes MATOP_TRANSPOSE = 14, 18511c1c02c0SLois Curfman McInnes MATOP_GETINFO = 15, 18521c1c02c0SLois Curfman McInnes MATOP_EQUAL = 16, 18531c1c02c0SLois Curfman McInnes MATOP_GET_DIAGONAL = 17, 18541c1c02c0SLois Curfman McInnes MATOP_DIAGONAL_SCALE = 18, 18551c1c02c0SLois Curfman McInnes MATOP_NORM = 19, 18561c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_BEGIN = 20, 18571c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_END = 21, 1858d519adbfSMatthew Knepley MATOP_SET_OPTION = 22, 1859d519adbfSMatthew Knepley MATOP_ZERO_ENTRIES = 23, 1860d519adbfSMatthew Knepley MATOP_ZERO_ROWS = 24, 1861d519adbfSMatthew Knepley MATOP_LUFACTOR_SYMBOLIC = 25, 1862d519adbfSMatthew Knepley MATOP_LUFACTOR_NUMERIC = 26, 1863d519adbfSMatthew Knepley MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27, 1864d519adbfSMatthew Knepley MATOP_CHOLESKY_FACTOR_NUMERIC = 28, 1865e5f2d425SStefano Zampini MATOP_SETUP = 29, 1866d519adbfSMatthew Knepley MATOP_ILUFACTOR_SYMBOLIC = 30, 1867d519adbfSMatthew Knepley MATOP_ICCFACTOR_SYMBOLIC = 31, 1868a5b7ff6bSBarry Smith MATOP_GET_DIAGONAL_BLOCK = 32, 1869e5f2d425SStefano Zampini MATOP_SET_INF = 33, 1870d519adbfSMatthew Knepley MATOP_DUPLICATE = 34, 1871d519adbfSMatthew Knepley MATOP_FORWARD_SOLVE = 35, 1872d519adbfSMatthew Knepley MATOP_BACKWARD_SOLVE = 36, 1873d519adbfSMatthew Knepley MATOP_ILUFACTOR = 37, 1874d519adbfSMatthew Knepley MATOP_ICCFACTOR = 38, 1875d519adbfSMatthew Knepley MATOP_AXPY = 39, 18767dae84e0SHong Zhang MATOP_CREATE_SUBMATRICES = 40, 1877d519adbfSMatthew Knepley MATOP_INCREASE_OVERLAP = 41, 1878d519adbfSMatthew Knepley MATOP_GET_VALUES = 42, 1879d519adbfSMatthew Knepley MATOP_COPY = 43, 1880d519adbfSMatthew Knepley MATOP_GET_ROW_MAX = 44, 1881d519adbfSMatthew Knepley MATOP_SCALE = 45, 1882d519adbfSMatthew Knepley MATOP_SHIFT = 46, 188335153367SBarry Smith MATOP_DIAGONAL_SET = 47, 18849d39f69dSJed Brown MATOP_ZERO_ROWS_COLUMNS = 48, 18859d39f69dSJed Brown MATOP_SET_RANDOM = 49, 1886d519adbfSMatthew Knepley MATOP_GET_ROW_IJ = 50, 1887d519adbfSMatthew Knepley MATOP_RESTORE_ROW_IJ = 51, 1888d519adbfSMatthew Knepley MATOP_GET_COLUMN_IJ = 52, 1889d519adbfSMatthew Knepley MATOP_RESTORE_COLUMN_IJ = 53, 1890d519adbfSMatthew Knepley MATOP_FDCOLORING_CREATE = 54, 1891d519adbfSMatthew Knepley MATOP_COLORING_PATCH = 55, 1892d519adbfSMatthew Knepley MATOP_SET_UNFACTORED = 56, 1893d519adbfSMatthew Knepley MATOP_PERMUTE = 57, 1894d519adbfSMatthew Knepley MATOP_SET_VALUES_BLOCKED = 58, 18957dae84e0SHong Zhang MATOP_CREATE_SUBMATRIX = 59, 1896d519adbfSMatthew Knepley MATOP_DESTROY = 60, 1897d519adbfSMatthew Knepley MATOP_VIEW = 61, 1898d519adbfSMatthew Knepley MATOP_CONVERT_FROM = 62, 1899e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_63=63 */ 19007bab7c10SHong Zhang MATOP_MATMAT_MULT_SYMBOLIC = 64, 19017bab7c10SHong Zhang MATOP_MATMAT_MULT_NUMERIC = 65, 1902d519adbfSMatthew Knepley MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66, 1903d519adbfSMatthew Knepley MATOP_SET_VALUES_LOCAL = 67, 1904d519adbfSMatthew Knepley MATOP_ZERO_ROWS_LOCAL = 68, 1905d519adbfSMatthew Knepley MATOP_GET_ROW_MAX_ABS = 69, 1906d519adbfSMatthew Knepley MATOP_GET_ROW_MIN_ABS = 70, 1907d519adbfSMatthew Knepley MATOP_CONVERT = 71, 1908e5f2d425SStefano Zampini MATOP_HAS_OPERATION = 72, 19099d39f69dSJed Brown /* MATOP_PLACEHOLDER_73=73, */ 1910d519adbfSMatthew Knepley MATOP_SET_VALUES_ADIFOR = 74, 1911d519adbfSMatthew Knepley MATOP_FD_COLORING_APPLY = 75, 1912d519adbfSMatthew Knepley MATOP_SET_FROM_OPTIONS = 76, 1913e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_77=77, */ 1914e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_78=78, */ 19159d39f69dSJed Brown MATOP_FIND_ZERO_DIAGONALS = 79, 1916d519adbfSMatthew Knepley MATOP_MULT_MULTIPLE = 80, 1917d519adbfSMatthew Knepley MATOP_SOLVE_MULTIPLE = 81, 1918d519adbfSMatthew Knepley MATOP_GET_INERTIA = 82, 1919d519adbfSMatthew Knepley MATOP_LOAD = 83, 1920d519adbfSMatthew Knepley MATOP_IS_SYMMETRIC = 84, 1921d519adbfSMatthew Knepley MATOP_IS_HERMITIAN = 85, 1922d519adbfSMatthew Knepley MATOP_IS_STRUCTURALLY_SYMMETRIC = 86, 1923820469bcSHong Zhang MATOP_SET_VALUES_BLOCKEDLOCAL = 87, 1924b41ce5d5SBarry Smith MATOP_CREATE_VECS = 88, 1925e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_89=89, */ 1926d519adbfSMatthew Knepley MATOP_MAT_MULT_SYMBOLIC = 90, 1927d519adbfSMatthew Knepley MATOP_MAT_MULT_NUMERIC = 91, 1928e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_92=92, */ 1929d519adbfSMatthew Knepley MATOP_PTAP_SYMBOLIC = 93, 1930d519adbfSMatthew Knepley MATOP_PTAP_NUMERIC = 94, 1931e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_95=95, */ 1932bda6c4cbSBarry Smith MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96, 1933bda6c4cbSBarry Smith MATOP_MAT_TRANSPOSE_MULT_NUMER = 97, 1934e5f2d425SStefano Zampini MATOP_BIND_TO_CPU = 98, 19357a3c3d58SStefano Zampini MATOP_PRODUCTSETFROMOPTIONS = 99, 19367a3c3d58SStefano Zampini MATOP_PRODUCTSYMBOLIC = 100, 19377a3c3d58SStefano Zampini MATOP_PRODUCTNUMERIC = 101, 1938d519adbfSMatthew Knepley MATOP_CONJUGATE = 102, 1939e5f2d425SStefano Zampini MATOP_VIEW_NATIVE = 103, 1940d519adbfSMatthew Knepley MATOP_SET_VALUES_ROW = 104, 1941d519adbfSMatthew Knepley MATOP_REAL_PART = 105, 1942bda6c4cbSBarry Smith MATOP_IMAGINARY_PART = 106, 1943bda6c4cbSBarry Smith MATOP_GET_ROW_UPPER_TRIANGULAR = 107, 1944bda6c4cbSBarry Smith MATOP_RESTORE_ROW_UPPER_TRIANG = 108, 1945bda6c4cbSBarry Smith MATOP_MAT_SOLVE = 109, 194629eadf9eSStefano Zampini MATOP_MAT_SOLVE_TRANSPOSE = 110, 1947d519adbfSMatthew Knepley MATOP_GET_ROW_MIN = 111, 19480e8d04f7SBarry Smith MATOP_GET_COLUMN_VECTOR = 112, 1949d519adbfSMatthew Knepley MATOP_MISSING_DIAGONAL = 113, 19500e8d04f7SBarry Smith MATOP_GET_SEQ_NONZERO_STRUCTUR = 114, 195189c6957cSBarry Smith MATOP_CREATE = 115, 195289c6957cSBarry Smith MATOP_GET_GHOSTS = 116, 19530e8d04f7SBarry Smith MATOP_GET_LOCAL_SUB_MATRIX = 117, 19540e8d04f7SBarry Smith MATOP_RESTORE_LOCALSUB_MATRIX = 118, 1955eeffb40dSHong Zhang MATOP_MULT_DIAGONAL_BLOCK = 119, 19560e8d04f7SBarry Smith MATOP_HERMITIAN_TRANSPOSE = 120, 19570e8d04f7SBarry Smith MATOP_MULT_HERMITIAN_TRANSPOSE = 121, 19580e8d04f7SBarry Smith MATOP_MULT_HERMITIAN_TRANS_ADD = 122, 19590e8d04f7SBarry Smith MATOP_GET_MULTI_PROC_BLOCK = 123, 19609d39f69dSJed Brown MATOP_FIND_NONZERO_ROWS = 124, 19610e8d04f7SBarry Smith MATOP_GET_COLUMN_NORMS = 125, 19629d39f69dSJed Brown MATOP_INVERT_BLOCK_DIAGONAL = 126, 1963e5f2d425SStefano Zampini MATOP_INVERT_VBLOCK_DIAGONAL = 127, 1964b41ce5d5SBarry Smith MATOP_CREATE_SUB_MATRICES_MPI = 128, 19652b8ad9a3SHong Zhang MATOP_SET_VALUES_BATCH = 129, 1966e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_130=130, */ 19670e8d04f7SBarry Smith MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131, 1968e9b602ebSSatish Balay MATOP_TRANSPOSE_MAT_MULT_NUMER = 132, 19690e8d04f7SBarry Smith MATOP_TRANSPOSE_COLORING_CREAT = 133, 19700e8d04f7SBarry Smith MATOP_TRANS_COLORING_APPLY_SPT = 134, 19710e8d04f7SBarry Smith MATOP_TRANS_COLORING_APPLY_DEN = 135, 1972e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_136=136, */ 19730e8d04f7SBarry Smith MATOP_RART_SYMBOLIC = 137, 19740e8d04f7SBarry Smith MATOP_RART_NUMERIC = 138, 1975e09a3074SHong Zhang MATOP_SET_BLOCK_SIZES = 139, 1976f9426fe0SMark Adams MATOP_AYPX = 140, 19771919a2e2SJed Brown MATOP_RESIDUAL = 141, 19789c8f2541SHong Zhang MATOP_FDCOLORING_SETUP = 142, 1979e5f2d425SStefano Zampini MATOP_FIND_OFFBLOCK_ENTRIES = 143, 19802d033e1fSHong Zhang MATOP_MPICONCATENATESEQ = 144, 1981bb01b7b0SPatrick Sanan MATOP_DESTROYSUBMATRICES = 145, 1982e265f6d6SPatrick Sanan MATOP_TRANSPOSE_SOLVE = 146, 1983e265f6d6SPatrick Sanan MATOP_GET_VALUES_LOCAL = 147 1984fae171e0SBarry Smith } MatOperation; 19850c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void)); 1986976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void)); 1987976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *); 198894342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *); 1989d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatProductClear() (since version 3.14)") static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A) 1990d71ae5a4SJacob Faibussowitsch { 19919371c9d4SSatish Balay return MatProductClear(A); 19929371c9d4SSatish Balay } 1993014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void)); 1994014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void)); 1995014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *); 1996800f99ffSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *)); 1997db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType); 1998f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 1999f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 20000c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat); 2001b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType); 2002b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *); 2003112a2221SBarry Smith 200490ace30eSBarry Smith /* 200590ace30eSBarry Smith Codes for matrices stored on disk. By default they are 200690ace30eSBarry Smith stored in a universal format. By changing the format with 20076a9046bcSBarry Smith PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will 200890ace30eSBarry Smith be stored in a way natural for the matrix, for example dense matrices 200990ace30eSBarry Smith would be stored as dense. Matrices stored this way may only be 2010f4403165SShri Abhyankar read into matrices of the same type. 201190ace30eSBarry Smith */ 201290ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1 201390ace30eSBarry Smith 2014014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal); 201575d48cdbSStefano Zampini 20168546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType); 201775d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 201875d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool); 2019f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool); 2020014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *); 20213b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *); 2022014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat); 2023e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 202425ef9dfeSBarry Smith PETSC_EXTERN PETSC_DEPRECATED_FUNCTION("Use the MatConvert() interface (since version 3.10)") PetscErrorCode MatISGetMPIXAIJ(Mat, MatReuse, Mat *); 20251f4e1ec7SBarry Smith 2026d9274352SBarry Smith /*S 2027d9274352SBarry Smith MatNullSpace - Object that removes a null space from a vector, i.e. 2028cb6b9846SMatthew Knepley orthogonalizes the vector to a subspace 2029d9274352SBarry Smith 2030f7a9e4ceSBarry Smith Level: advanced 2031d9274352SBarry Smith 20322ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()` 2033d9274352SBarry Smith S*/ 203474637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace; 2035d9274352SBarry Smith 2036014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *); 2037014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *); 2038014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *); 2039d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec); 2040014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *); 20415fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *); 20425fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace); 2043014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace); 2044014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace); 2045014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *); 2046014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *); 2047014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer); 2048014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **); 2049014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *); 205074637425SBarry Smith 2051014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS); 2052014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal); 2053014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *); 20543f1d51d7SBarry Smith 2055014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *); 2056014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *); 2057014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *); 2058c4f061fbSSatish Balay 20590bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *); 20600bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *); 20610bacdadaSStefano Zampini 2062d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatComputeOperator() (since version 3.12)") static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B) 2063d71ae5a4SJacob Faibussowitsch { 2064f22e26b7SPierre Jolivet return MatComputeOperator(A, PETSC_NULLPTR, B); 20659371c9d4SSatish Balay } 2066d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatComputeOperatorTranspose() (since version 3.12)") static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B) 2067d71ae5a4SJacob Faibussowitsch { 2068f22e26b7SPierre Jolivet return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B); 20699371c9d4SSatish Balay } 2070b0a32e0cSBarry Smith 207149bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *); 207249bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *); 2073a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **); 2074a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2075a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **); 2076a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **); 2077a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **); 2078a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2079a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **); 2080a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **); 2081dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat); 2082dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]); 2083dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]); 2084910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *); 208549bd79ccSDebojyoti Ghosh 2086014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec); 208704f1ad80SBarry Smith 2088014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2089014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec); 2090014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *); 2091014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *)); 2092014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec)); 2093014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt); 2094014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat); 2095014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal); 2096014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt); 2097014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *); 2098014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]); 2099014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *); 2100014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *); 2101e884886fSBarry Smith 21026370053bSBarry Smith /*S 21036370053bSBarry Smith MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free 21046370053bSBarry Smith Jacobian vector products 2105e884886fSBarry Smith 21062ef1f0ffSBarry Smith Level: developer 21072ef1f0ffSBarry Smith 210895452b02SPatrick Sanan Notes: 210987497f52SBarry Smith `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure 21106370053bSBarry Smith 21112ef1f0ffSBarry Smith MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure 21126370053bSBarry Smith 21132ef1f0ffSBarry Smith This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator` 21146370053bSBarry Smith 21152ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`, 21162ef1f0ffSBarry Smith `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator` 21176370053bSBarry Smith S*/ 2118e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD; 2119e884886fSBarry Smith 212076bdecfbSBarry Smith /*J 21212ef1f0ffSBarry Smith MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function 2122e884886fSBarry Smith 2123e884886fSBarry Smith Level: beginner 2124e884886fSBarry Smith 21252ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()` 212676bdecfbSBarry Smith J*/ 212719fd82e9SBarry Smith typedef const char *MatMFFDType; 2128e884886fSBarry Smith #define MATMFFD_DS "ds" 2129e884886fSBarry Smith #define MATMFFD_WP "wp" 2130e884886fSBarry Smith 213119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType); 2132bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD)); 2133e884886fSBarry Smith 2134014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal); 2135014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool); 2136e884886fSBarry Smith 213761ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType); 213861ab5df0SBarry Smith 2139014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *); 2140014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *); 21417dbadf16SMatthew Knepley 214253022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS 214353022affSStefano Zampini PETSC_EXTERN_TYPEDEF typedef PetscScalar (*MatH2OpusKernel)(PetscInt, PetscReal[], PetscReal[], void *); 214453022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernel, void *, PetscReal, PetscInt, PetscInt, Mat *); 214553022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *); 214653022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal); 214753022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat); 214853022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal); 214953022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool); 215053022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *); 215153022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *); 215253022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *); 2153300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar); 2154a0d2e7d8SStefano Zampini #endif 2155a0d2e7d8SStefano Zampini 2156c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL 215798e73e17SPierre Jolivet PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatHtoolKernel)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *); 2158c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernel, void *, Mat *); 2159c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernel, void *); 216098e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *); 216198e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *); 216298e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool); 21632ef1f0ffSBarry Smith 2164c7a4214aSPierre Jolivet /*E 216587497f52SBarry Smith MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL` 2166c7a4214aSPierre Jolivet 21672ef1f0ffSBarry Smith Level: intermediate 2168c7a4214aSPierre Jolivet 2169c7a4214aSPierre Jolivet Values: 217087497f52SBarry Smith + `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation 217187497f52SBarry Smith . `MAT_HTOOL_COMPRESSOR_FULL_ACA` - full adaptive cross approximation 217287497f52SBarry Smith - `MAT_HTOOL_COMPRESSOR_SVD` - singular value decomposition 2173c7a4214aSPierre Jolivet 21742ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType` 2175c7a4214aSPierre Jolivet E*/ 21769371c9d4SSatish Balay typedef enum { 21779371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA, 21789371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_FULL_ACA, 21799371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_SVD 21809371c9d4SSatish Balay } MatHtoolCompressorType; 21812ef1f0ffSBarry Smith 218298e73e17SPierre Jolivet /*E 218387497f52SBarry Smith MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL` 218498e73e17SPierre Jolivet 21852ef1f0ffSBarry Smith Level: intermediate 218698e73e17SPierre Jolivet 218798e73e17SPierre Jolivet Values: 218887497f52SBarry Smith + `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default) - axis computed via principle component analysis, split uniformly 218987497f52SBarry Smith . `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC` - axis computed via principle component analysis, split barycentrically 219087497f52SBarry Smith . `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR` - axis along the largest extent of the bounding box, split uniformly 219187497f52SBarry Smith - `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically 219298e73e17SPierre Jolivet 21932ef1f0ffSBarry Smith Note: 21942ef1f0ffSBarry Smith Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types 219598e73e17SPierre Jolivet 21962ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType` 219798e73e17SPierre Jolivet E*/ 21989371c9d4SSatish Balay typedef enum { 21999371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_PCA_REGULAR, 22009371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC, 22019371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR, 22029371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC 22039371c9d4SSatish Balay } MatHtoolClusteringType; 2204c7a4214aSPierre Jolivet #endif 2205c7a4214aSPierre Jolivet 220697969023SHong Zhang #ifdef PETSC_HAVE_MUMPS 2207014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt); 2208bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *); 2209b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal); 2210bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *); 2211bc6112feSHong Zhang 2212ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *); 2213ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *); 2214ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *); 2215ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *); 22165c0bae8cSAshish Patel PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **); 221789a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat); 22180e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat); 221997969023SHong Zhang #endif 222023a5497aSJed Brown 2221b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO 2222d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt); 2223b500a6b7SJose David Bermeol #endif 2224b500a6b7SJose David Bermeol 2225d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO 2226d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt); 2227d305a81bSVasiliy Kozyrev #endif 2228d305a81bSVasiliy Kozyrev 2229d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU 2230014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal); 2231d954db57SHong Zhang #endif 2232d954db57SHong Zhang 2233fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST 2234fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *); 2235fb785984SHong Zhang #endif 2236fb785984SHong Zhang 2237575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK 2238542aee0fSPieter Ghysels /*E 22392ef1f0ffSBarry Smith MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK`` 2240542aee0fSPieter Ghysels 2241542aee0fSPieter Ghysels Level: intermediate 22422ef1f0ffSBarry Smith 22432ef1f0ffSBarry Smith Values: 22442ef1f0ffSBarry Smith + `MAT_STRUMPACK_NATURAL` - use the current ordering 22452ef1f0ffSBarry Smith . `MAT_STRUMPACK_METIS` - use MeTis to compute an ordering 22462ef1f0ffSBarry Smith . `MAT_STRUMPACK_PARMETIS` - use ParMeTis to compute an ordering 22472ef1f0ffSBarry Smith . `MAT_STRUMPACK_SCOTCH` - use Scotch to compute an ordering 22482ef1f0ffSBarry Smith . `MAT_STRUMPACK_PTSCOTCH` - use parallel Scotch to compute an ordering 22492ef1f0ffSBarry Smith - `MAT_STRUMPACK_RCM` - use an RCM ordering 22502ef1f0ffSBarry Smith 22512ef1f0ffSBarry Smith Developer Note: 22522ef1f0ffSBarry Smith Should be called `MatSTRUMPACKReorderingType` 22532ef1f0ffSBarry Smith 22542ef1f0ffSBarry Smith .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetHSSRelTol()`, `MatSTRUMPACKSetReordering()` 2255542aee0fSPieter Ghysels E*/ 22569371c9d4SSatish Balay typedef enum { 22579371c9d4SSatish Balay MAT_STRUMPACK_NATURAL = 0, 225834f43fa5SPieter Ghysels MAT_STRUMPACK_METIS = 1, 225934f43fa5SPieter Ghysels MAT_STRUMPACK_PARMETIS = 2, 226034f43fa5SPieter Ghysels MAT_STRUMPACK_SCOTCH = 3, 226134f43fa5SPieter Ghysels MAT_STRUMPACK_PTSCOTCH = 4, 22629371c9d4SSatish Balay MAT_STRUMPACK_RCM = 5 22639371c9d4SSatish Balay } MatSTRUMPACKReordering; 22642ef1f0ffSBarry Smith 226534f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering); 2266575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool); 226734f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSRelTol(Mat, PetscReal); 2268d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSTRUMPACKSetHSSRelTol() (since version 3.9)") static inline PetscErrorCode MatSTRUMPACKSetHSSRelCompTol(Mat mat, PetscReal rtol) 2269d71ae5a4SJacob Faibussowitsch { 22709371c9d4SSatish Balay return MatSTRUMPACKSetHSSRelTol(mat, rtol); 22719371c9d4SSatish Balay } 227234f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSAbsTol(Mat, PetscReal); 227334f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMinSepSize(Mat, PetscInt); 2274d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSTRUMPACKSetHSSMinSepSize() (since version 3.9)") static inline PetscErrorCode MatSTRUMPACKSetHSSMinSize(Mat mat, PetscInt hssminsize) 2275d71ae5a4SJacob Faibussowitsch { 22769371c9d4SSatish Balay return MatSTRUMPACKSetHSSMinSepSize(mat, hssminsize); 22779371c9d4SSatish Balay } 227834f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMaxRank(Mat, PetscInt); 2279a36bf211SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSLeafSize(Mat, PetscInt); 2280575704cbSPieter Ghysels #endif 2281575704cbSPieter Ghysels 2282b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool); 22832216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *); 2284d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatBindToCPU (since v3.13)") static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg) 2285d71ae5a4SJacob Faibussowitsch { 22869371c9d4SSatish Balay return MatBindToCPU(A, flg); 22879371c9d4SSatish Balay } 228865a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool); 2289e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *); 2290e7e92044SBarry Smith 2291042217e8SBarry Smith typedef struct _n_SplitCSRMat *PetscSplitCSRDataStructure; 2292042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatCUSPARSEGetDeviceMatWrite(Mat, PetscSplitCSRDataStructure *); 2293a587d139SMark 2294a587d139SMark #ifdef PETSC_HAVE_KOKKOS_KERNELS 2295042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatKokkosGetDeviceMatWrite(Mat, PetscSplitCSRDataStructure *); 2296042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJKokkosSetDeviceMat(Mat, PetscSplitCSRDataStructure); 2297042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJKokkosGetDeviceMat(Mat, PetscSplitCSRDataStructure *); 2298a587d139SMark #endif 2299a587d139SMark 2300aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA 23013f9c0db1SPaul Mullowney /*E 23022ef1f0ffSBarry Smith MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU) 23032692e278SPaul Mullowney matrices. 2304e057df02SPaul Mullowney 23052ef1f0ffSBarry Smith Values: 230687497f52SBarry Smith + `MAT_CUSPARSE_CSR` - Compressed Sparse Row 230787497f52SBarry Smith . `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later). 230887497f52SBarry Smith - `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later). 2309e057df02SPaul Mullowney 2310e057df02SPaul Mullowney Level: intermediate 2311e057df02SPaul Mullowney 23122ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation` 2313e057df02SPaul Mullowney E*/ 2314e057df02SPaul Mullowney 23159371c9d4SSatish Balay typedef enum { 23169371c9d4SSatish Balay MAT_CUSPARSE_CSR, 23179371c9d4SSatish Balay MAT_CUSPARSE_ELL, 23189371c9d4SSatish Balay MAT_CUSPARSE_HYB 23199371c9d4SSatish Balay } MatCUSPARSEStorageFormat; 2320e057df02SPaul Mullowney 2321e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */ 2322e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[]; 2323e057df02SPaul Mullowney 23243f9c0db1SPaul Mullowney /*E 23252ef1f0ffSBarry Smith MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU) 23262692e278SPaul Mullowney matrices whose operation should use a particular storage format. 2327e057df02SPaul Mullowney 23282ef1f0ffSBarry Smith Values: 232987497f52SBarry Smith + `MAT_CUSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel MatMult 233087497f52SBarry Smith . `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel MatMult 233187497f52SBarry Smith . `MAT_CUSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) MatMult 23322ef1f0ffSBarry Smith - `MAT_CUSPARSE_ALL` - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices 2333e057df02SPaul Mullowney 2334e057df02SPaul Mullowney Level: intermediate 2335e057df02SPaul Mullowney 23362ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat` 2337e057df02SPaul Mullowney E*/ 23389371c9d4SSatish Balay typedef enum { 23399371c9d4SSatish Balay MAT_CUSPARSE_MULT_DIAG, 23409371c9d4SSatish Balay MAT_CUSPARSE_MULT_OFFDIAG, 23419371c9d4SSatish Balay MAT_CUSPARSE_MULT, 23429371c9d4SSatish Balay MAT_CUSPARSE_ALL 23439371c9d4SSatish Balay } MatCUSPARSEFormatOperation; 2344e057df02SPaul Mullowney 234510e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 234610e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2347e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat); 2348365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool); 23495f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 23505f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 23515f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **); 23525f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **); 23535f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **); 23545f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **); 23555f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **); 23565f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **); 2357637a0070SStefano Zampini 2358637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 2359637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 2360637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **); 2361637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **); 2362637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **); 2363637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **); 2364637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **); 2365637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **); 2366637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *); 2367d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *); 2368637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat); 23692d1451d4SHong Zhang 23702d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 23712d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 23729ae82921SPaul Mullowney #endif 23739ae82921SPaul Mullowney 237447d993e7Ssuyashtn #ifdef PETSC_HAVE_HIP 237547d993e7Ssuyashtn /*E 23762ef1f0ffSBarry Smith MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU) 237747d993e7Ssuyashtn matrices. 237847d993e7Ssuyashtn 237947d993e7Ssuyashtn Level: intermediate 238047d993e7Ssuyashtn 23812ef1f0ffSBarry Smith Values: 23822ef1f0ffSBarry Smith + `MAT_HIPSPARSE_CSR` - Compressed Sparse Row 23832ef1f0ffSBarry Smith . `MAT_HIPSPARSE_ELL` - Ellpack 23842ef1f0ffSBarry Smith - `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format 238547d993e7Ssuyashtn 23862ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation` 238747d993e7Ssuyashtn E*/ 238847d993e7Ssuyashtn 238947d993e7Ssuyashtn typedef enum { 239047d993e7Ssuyashtn MAT_HIPSPARSE_CSR, 239147d993e7Ssuyashtn MAT_HIPSPARSE_ELL, 239247d993e7Ssuyashtn MAT_HIPSPARSE_HYB 239347d993e7Ssuyashtn } MatHIPSPARSEStorageFormat; 239447d993e7Ssuyashtn 239547d993e7Ssuyashtn /* these will be strings associated with enumerated type defined above */ 239647d993e7Ssuyashtn PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[]; 239747d993e7Ssuyashtn 239847d993e7Ssuyashtn /*E 23992ef1f0ffSBarry Smith MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU) 240047d993e7Ssuyashtn matrices whose operation should use a particular storage format. 240147d993e7Ssuyashtn 240247d993e7Ssuyashtn Level: intermediate 240347d993e7Ssuyashtn 24042ef1f0ffSBarry Smith Values: 24052ef1f0ffSBarry Smith + `MAT_HIPSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()` 24062ef1f0ffSBarry Smith . `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel `MatMul()t` 24072ef1f0ffSBarry Smith . `MAT_HIPSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()` 24082ef1f0ffSBarry Smith - `MAT_HIPSPARSE_ALL` - sets the storage format for all HIPSPARSE (GPU) matrices 24092ef1f0ffSBarry Smith 24102ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat` 241147d993e7Ssuyashtn E*/ 241247d993e7Ssuyashtn typedef enum { 241347d993e7Ssuyashtn MAT_HIPSPARSE_MULT_DIAG, 241447d993e7Ssuyashtn MAT_HIPSPARSE_MULT_OFFDIAG, 241547d993e7Ssuyashtn MAT_HIPSPARSE_MULT, 241647d993e7Ssuyashtn MAT_HIPSPARSE_ALL 241747d993e7Ssuyashtn } MatHIPSPARSEFormatOperation; 241847d993e7Ssuyashtn 241947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 242047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 242147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat); 242247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool); 242347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 242447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 242547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **); 242647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **); 242747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **); 242847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **); 242947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **); 243047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **); 243147d993e7Ssuyashtn 243247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 243347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 243447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **); 243547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **); 243647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **); 243747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **); 243847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **); 243947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **); 244047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *); 244147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *); 244247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat); 244347d993e7Ssuyashtn #endif 244447d993e7Ssuyashtn 2445d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL) 2446d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2447d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2448d67ff14aSKarl Rupp #endif 2449d67ff14aSKarl Rupp 245054efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW) 2451014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec); 2452014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec); 24532a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *); 245454efbe56SHong Zhang #endif 245554efbe56SHong Zhang 2456d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 2457d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2458d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt); 2459d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *); 2460d24d4204SJose E. Roman #endif 2461d24d4204SJose E. Roman 2462014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *); 2463014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *); 2464014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]); 2465014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]); 2466014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***); 2467014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *); 246819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType); 2469014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]); 2470014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat); 2471d8588912SDave May 24724325cce7SMatthew G Knepley PETSC_EXTERN PetscErrorCode MatChop(Mat, PetscReal); 2473e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *); 24744325cce7SMatthew G Knepley 2475b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **); 247653dd7562SDmitry Karpeev 2477c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat); 2478c094ef40SMatthew G. Knepley 2479539c167fSBarry Smith PETSC_INTERN PetscErrorCode MatHeaderMerge(Mat, Mat *); 2480539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *); 24811a2c6b5cSJunchao Zhang 24827ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *); 248372833a62Smarkadams4 24842d776b49SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, Mat *); 2485dec0b466SHong Zhang PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat); 2486ad6ad4e1SHansol Suh 2487ad6ad4e1SHansol Suh PETSC_EXTERN PetscErrorCode VecCreateMatDense(Vec, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *); 248823a5497aSJed Brown #endif 2489