xref: /petsc/include/petscmat.h (revision bbb72809d0d086fcc837899733ecccb12a5516ec)
12eac72dbSBarry Smith /*
22eac72dbSBarry Smith      Include file for the matrix component of PETSc
32eac72dbSBarry Smith */
4a4963045SJacob Faibussowitsch #pragma once
5ac09b921SBarry Smith 
62c8e378dSBarry Smith #include <petscvec.h>
72eac72dbSBarry Smith 
8ac09b921SBarry Smith /* SUBMANSEC = Mat */
9ac09b921SBarry Smith 
10d9274352SBarry Smith /*S
118f6c3df8SBarry Smith    Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without
12af27ebaaSBarry Smith          an explicit sparse representation (such as matrix-free operators). Also used to hold representations of graphs
13af27ebaaSBarry Smith          for graph operations such as coloring, `MatColoringCreate()`
142eac72dbSBarry Smith 
15d91e6319SBarry Smith    Level: beginner
16d91e6319SBarry Smith 
172ef1f0ffSBarry Smith    Note:
181cc06b55SBarry Smith    See [](doc_matrix), [](ch_matrices) and `MatType` for available matrix types
192ef1f0ffSBarry Smith 
201cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()`
21d9274352SBarry Smith S*/
22d9274352SBarry Smith typedef struct _p_Mat *Mat;
23d9274352SBarry Smith 
2476bdecfbSBarry Smith /*J
258f6c3df8SBarry Smith    MatType - String with the name of a PETSc matrix type
26d9274352SBarry Smith 
27d9274352SBarry Smith    Level: beginner
28d9274352SBarry Smith 
292ef1f0ffSBarry Smith    Note:
302ef1f0ffSBarry Smith    [](doc_matrix) for a table of available matrix types
312ef1f0ffSBarry Smith 
321cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()`
3376bdecfbSBarry Smith J*/
3419fd82e9SBarry Smith typedef const char *MatType;
35273d9f13SBarry Smith #define MATSAME                      "same"
365a11e1b2SBarry Smith #define MATMAIJ                      "maij"
37273d9f13SBarry Smith #define MATSEQMAIJ                   "seqmaij"
38273d9f13SBarry Smith #define MATMPIMAIJ                   "mpimaij"
3949bd79ccSDebojyoti Ghosh #define MATKAIJ                      "kaij"
4049bd79ccSDebojyoti Ghosh #define MATSEQKAIJ                   "seqkaij"
4149bd79ccSDebojyoti Ghosh #define MATMPIKAIJ                   "mpikaij"
42273d9f13SBarry Smith #define MATIS                        "is"
435a11e1b2SBarry Smith #define MATAIJ                       "aij"
44273d9f13SBarry Smith #define MATSEQAIJ                    "seqaij"
45273d9f13SBarry Smith #define MATMPIAIJ                    "mpiaij"
465a11e1b2SBarry Smith #define MATAIJCRL                    "aijcrl"
475a11e1b2SBarry Smith #define MATSEQAIJCRL                 "seqaijcrl"
485a11e1b2SBarry Smith #define MATMPIAIJCRL                 "mpiaijcrl"
499ae82921SPaul Mullowney #define MATAIJCUSPARSE               "aijcusparse"
509ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE            "seqaijcusparse"
519ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE            "mpiaijcusparse"
5247d993e7Ssuyashtn #define MATAIJHIPSPARSE              "aijhipsparse"
5347d993e7Ssuyashtn #define MATSEQAIJHIPSPARSE           "seqaijhipsparse"
5447d993e7Ssuyashtn #define MATMPIAIJHIPSPARSE           "mpiaijhipsparse"
558c3ff71bSJunchao Zhang #define MATAIJKOKKOS                 "aijkokkos"
568c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS              "seqaijkokkos"
578c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS              "mpiaijkokkos"
58d67ff14aSKarl Rupp #define MATAIJVIENNACL               "aijviennacl"
59d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL            "seqaijviennacl"
60d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL            "mpiaijviennacl"
615a11e1b2SBarry Smith #define MATAIJPERM                   "aijperm"
625a11e1b2SBarry Smith #define MATSEQAIJPERM                "seqaijperm"
635a11e1b2SBarry Smith #define MATMPIAIJPERM                "mpiaijperm"
644dfdc2d9SRichard Tran Mills #define MATAIJSELL                   "aijsell"
654dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL                "seqaijsell"
664dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL                "mpiaijsell"
674a2a386eSRichard Tran Mills #define MATAIJMKL                    "aijmkl"
684a2a386eSRichard Tran Mills #define MATSEQAIJMKL                 "seqaijmkl"
694a2a386eSRichard Tran Mills #define MATMPIAIJMKL                 "mpiaijmkl"
70b5b72c8aSIrina Sokolova #define MATBAIJMKL                   "baijmkl"
71b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL                "seqbaijmkl"
72b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL                "mpibaijmkl"
73273d9f13SBarry Smith #define MATSHELL                     "shell"
74c1fff1c6SRichard Tran Mills #define MATCENTERING                 "centering"
755a11e1b2SBarry Smith #define MATDENSE                     "dense"
76637a0070SStefano Zampini #define MATDENSECUDA                 "densecuda"
7747d993e7Ssuyashtn #define MATDENSEHIP                  "densehip"
78209238afSKris Buschelman #define MATSEQDENSE                  "seqdense"
79bfc799aaSStefano Zampini #define MATSEQDENSECUDA              "seqdensecuda"
8047d993e7Ssuyashtn #define MATSEQDENSEHIP               "seqdensehip"
81273d9f13SBarry Smith #define MATMPIDENSE                  "mpidense"
82637a0070SStefano Zampini #define MATMPIDENSECUDA              "mpidensecuda"
8347d993e7Ssuyashtn #define MATMPIDENSEHIP               "mpidensehip"
84db31f6deSJed Brown #define MATELEMENTAL                 "elemental"
85d24d4204SJose E. Roman #define MATSCALAPACK                 "scalapack"
865a11e1b2SBarry Smith #define MATBAIJ                      "baij"
87273d9f13SBarry Smith #define MATSEQBAIJ                   "seqbaij"
88273d9f13SBarry Smith #define MATMPIBAIJ                   "mpibaij"
89273d9f13SBarry Smith #define MATMPIADJ                    "mpiadj"
905a11e1b2SBarry Smith #define MATSBAIJ                     "sbaij"
91273d9f13SBarry Smith #define MATSEQSBAIJ                  "seqsbaij"
92273d9f13SBarry Smith #define MATMPISBAIJ                  "mpisbaij"
93cebc7f6cSBarry Smith #define MATMFFD                      "mffd"
94c8a8475eSBarry Smith #define MATNORMAL                    "normal"
95c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN           "normalh"
96ab92ecdeSBarry Smith #define MATLRC                       "lrc"
972a6744ebSBarry Smith #define MATSCATTER                   "scatter"
98421e10b8SBarry Smith #define MATBLOCKMAT                  "blockmat"
99793850ffSBarry Smith #define MATCOMPOSITE                 "composite"
1001f8c7532SHong Zhang #define MATFFT                       "fft"
1011f8c7532SHong Zhang #define MATFFTW                      "fftw"
102e133240eSMatthew G Knepley #define MATSEQCUFFT                  "seqcufft"
10347d993e7Ssuyashtn #define MATSEQHIPFFT                 "seqhipfft"
104edd03b47SJacob Faibussowitsch #define MATTRANSPOSEMAT              PETSC_DEPRECATED_MACRO(3, 18, 0, "MATTRANSPOSEVIRTUAL", ) "transpose"
105013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL          "transpose"
106013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose"
10772ca8751SBarry Smith #define MATSCHURCOMPLEMENT           "schurcomplement"
1081d6018f0SLisandro Dalcin #define MATPYTHON                    "python"
10963c07aadSStefano Zampini #define MATHYPRE                     "hypre"
110f91d8e95SBarry Smith #define MATHYPRESTRUCT               "hyprestruct"
111a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT              "hypresstruct"
112ee1cef2cSJed Brown #define MATSUBMATRIX                 "submatrix"
1132c0dbf93SJed Brown #define MATLOCALREF                  "localref"
114d8588912SDave May #define MATNEST                      "nest"
115c094ef40SMatthew G. Knepley #define MATPREALLOCATOR              "preallocator"
116d4002b98SHong Zhang #define MATSELL                      "sell"
117d4002b98SHong Zhang #define MATSEQSELL                   "seqsell"
118d4002b98SHong Zhang #define MATMPISELL                   "mpisell"
1192d1451d4SHong Zhang #define MATSELLCUDA                  "sellcuda"
1202d1451d4SHong Zhang #define MATSEQSELLCUDA               "seqsellcuda"
1212d1451d4SHong Zhang #define MATMPISELLCUDA               "mpisellcuda"
122a3b2e22bSHong Zhang #define MATDUMMY                     "dummy"
123cd929ea3SAlp Dener #define MATLMVM                      "lmvm"
12478e4361aSAlp Dener #define MATLMVMDFP                   "lmvmdfp"
125*bbb72809SHansol Suh #define MATLMVMDDFP                  "lmvmddfp"
12678e4361aSAlp Dener #define MATLMVMBFGS                  "lmvmbfgs"
127*bbb72809SHansol Suh #define MATLMVMDBFGS                 "lmvmdbfgs"
128*bbb72809SHansol Suh #define MATLMVMDQN                   "lmvmdqn"
12978e4361aSAlp Dener #define MATLMVMSR1                   "lmvmsr1"
130864588a7SAlp Dener #define MATLMVMBROYDEN               "lmvmbroyden"
131864588a7SAlp Dener #define MATLMVMBADBROYDEN            "lmvmbadbroyden"
132864588a7SAlp Dener #define MATLMVMSYMBROYDEN            "lmvmsymbroyden"
133864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN         "lmvmsymbadbroyden"
134864588a7SAlp Dener #define MATLMVMDIAGBROYDEN           "lmvmdiagbroyden"
1353423f386SBarry Smith #define MATCONSTANTDIAGONAL          "constantdiagonal"
136345a4b08SToby Isaac #define MATDIAGONAL                  "diagonal"
137c7a4214aSPierre Jolivet #define MATHTOOL                     "htool"
13853022affSStefano Zampini #define MATH2OPUS                    "h2opus"
139773941d6SBarry Smith 
14076bdecfbSBarry Smith /*J
141af27ebaaSBarry Smith    MatSolverType - String with the name of a PETSc factorization-based matrix solver type.
1429989ab13SBarry Smith 
143c2b89b5dSBarry Smith    For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc
1449989ab13SBarry Smith 
1459989ab13SBarry Smith    Level: beginner
1469989ab13SBarry Smith 
1472ef1f0ffSBarry Smith    Note:
14816a05f60SBarry Smith    `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as
14916a05f60SBarry Smith    a ./configure option to install them
150c7ccbb75SBarry Smith 
1511cc06b55SBarry Smith .seealso: [](sec_matfactor), [](ch_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()`
15276bdecfbSBarry Smith J*/
153ea799195SBarry Smith typedef const char *MatSolverType;
1542692d6eeSBarry Smith #define MATSOLVERSUPERLU      "superlu"
1552692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST "superlu_dist"
15608f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK    "strumpack"
1572692d6eeSBarry Smith #define MATSOLVERUMFPACK      "umfpack"
15820db9a53SJed Brown #define MATSOLVERCHOLMOD      "cholmod"
159d89f5e7aSBarry Smith #define MATSOLVERKLU          "klu"
160d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL    "elemental"
161d24d4204SJose E. Roman #define MATSOLVERSCALAPACK    "scalapack"
1622692d6eeSBarry Smith #define MATSOLVERESSL         "essl"
1632692d6eeSBarry Smith #define MATSOLVERLUSOL        "lusol"
1642692d6eeSBarry Smith #define MATSOLVERMUMPS        "mumps"
165d615f992SSatish Balay #define MATSOLVERMKL_PARDISO  "mkl_pardiso"
166d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO "mkl_cpardiso"
1672692d6eeSBarry Smith #define MATSOLVERPASTIX       "pastix"
1682692d6eeSBarry Smith #define MATSOLVERMATLAB       "matlab"
1692692d6eeSBarry Smith #define MATSOLVERPETSC        "petsc"
1702692d6eeSBarry Smith #define MATSOLVERBAS          "bas"
1719ae82921SPaul Mullowney #define MATSOLVERCUSPARSE     "cusparse"
172bfc799aaSStefano Zampini #define MATSOLVERCUDA         "cuda"
17347d993e7Ssuyashtn #define MATSOLVERHIPSPARSE    "hipsparse"
17447d993e7Ssuyashtn #define MATSOLVERHIP          "hip"
175930e68a5SMark Adams #define MATSOLVERKOKKOS       "kokkos"
176a2fc1e05SToby Isaac #define MATSOLVERSPQR         "spqr"
177c0cdd4a1SDahai Guo 
178b24902e0SBarry Smith /*E
179b24902e0SBarry Smith     MatFactorType - indicates what type of factorization is requested
180b24902e0SBarry Smith 
1812ef1f0ffSBarry Smith     Values:
1822ef1f0ffSBarry Smith +  `MAT_FACTOR_LU`       - LU factorization
1832ef1f0ffSBarry Smith .  `MAT_FACTOR_CHOLESKY` - Cholesky factorization
1842ef1f0ffSBarry Smith .  `MAT_FACTOR_ILU`      - ILU factorization
1852ef1f0ffSBarry Smith .  `MAT_FACTOR_ICC`      - incomplete Cholesky factorization
1862ef1f0ffSBarry Smith .  `MAT_FACTOR_ILUDT`    - ILU factorization with drop tolerance
1872ef1f0ffSBarry Smith -  `MAT_FACTOR_QR`       - QR factorization
188b24902e0SBarry Smith 
18916a05f60SBarry Smith     Level: beginner
19016a05f60SBarry Smith 
1911cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()`
192b24902e0SBarry Smith E*/
1939371c9d4SSatish Balay typedef enum {
1949371c9d4SSatish Balay   MAT_FACTOR_NONE,
1959371c9d4SSatish Balay   MAT_FACTOR_LU,
1969371c9d4SSatish Balay   MAT_FACTOR_CHOLESKY,
1979371c9d4SSatish Balay   MAT_FACTOR_ILU,
1989371c9d4SSatish Balay   MAT_FACTOR_ICC,
1999371c9d4SSatish Balay   MAT_FACTOR_ILUDT,
2009371c9d4SSatish Balay   MAT_FACTOR_QR,
2019371c9d4SSatish Balay   MAT_FACTOR_NUM_TYPES
2029371c9d4SSatish Balay } MatFactorType;
203014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[];
204e92e720dSBarry Smith 
205ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *);
206ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *);
207f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *);
208edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 15, 0, "MatFactorGetCanUseOrdering()", ) static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b)
209d71ae5a4SJacob Faibussowitsch {
2109371c9d4SSatish Balay   return MatFactorGetCanUseOrdering(A, b);
2119371c9d4SSatish Balay }
212ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *);
213014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *);
2147abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType);
2158434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode(MatSolverFn)(Mat, MatFactorType, Mat *);
2168434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatSolverFn *MatSolverFunction;
21707e0ed13SBarry Smith 
2188434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFn *);
2198434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFn **);
220edd03b47SJacob Faibussowitsch typedef MatSolverType       MatSolverPackage PETSC_DEPRECATED_TYPEDEF(3, 9, 0, "MatSolverType", );
2218434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeRegister()", ) static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFn *f)
222d71ae5a4SJacob Faibussowitsch {
2239371c9d4SSatish Balay   return MatSolverTypeRegister(stype, mtype, ftype, f);
2249371c9d4SSatish Balay }
2258434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeGet()", ) static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFn **f)
226d71ae5a4SJacob Faibussowitsch {
2279371c9d4SSatish Balay   return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f);
2289371c9d4SSatish Balay }
2299989ab13SBarry Smith 
2304222ddf1SHong Zhang /*E
23195bd0b28SBarry Smith     MatProductType - indicates what type of matrix product to compute
2324222ddf1SHong Zhang 
2332ef1f0ffSBarry Smith     Values:
2342ef1f0ffSBarry Smith +  `MATPRODUCT_AB`   - product of two matrices
2352ef1f0ffSBarry Smith .  `MATPRODUCT_AtB`  - product of the transpose of a given matrix with a matrix
2362ef1f0ffSBarry Smith .  `MATPRODUCT_ABt`  - product of a matrix with the transpose of another given matrix
2372ef1f0ffSBarry Smith .  `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself
2382ef1f0ffSBarry Smith .  `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix
2392ef1f0ffSBarry Smith -  `MATPRODUCT_ABC`  - the product of three matrices
2402ef1f0ffSBarry Smith 
24116a05f60SBarry Smith     Level: beginner
24216a05f60SBarry Smith 
2431cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatProductSetType()`
2444222ddf1SHong Zhang E*/
2459371c9d4SSatish Balay typedef enum {
2469371c9d4SSatish Balay   MATPRODUCT_UNSPECIFIED = 0,
2479371c9d4SSatish Balay   MATPRODUCT_AB,
2489371c9d4SSatish Balay   MATPRODUCT_AtB,
2499371c9d4SSatish Balay   MATPRODUCT_ABt,
2509371c9d4SSatish Balay   MATPRODUCT_PtAP,
2519371c9d4SSatish Balay   MATPRODUCT_RARt,
2529371c9d4SSatish Balay   MATPRODUCT_ABC
2539371c9d4SSatish Balay } MatProductType;
254544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[];
2554222ddf1SHong Zhang 
2564222ddf1SHong Zhang /*J
2574222ddf1SHong Zhang     MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation
2584222ddf1SHong Zhang 
2594222ddf1SHong Zhang    Level: beginner
2604222ddf1SHong Zhang 
2611cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType`
2624222ddf1SHong Zhang J*/
2634222ddf1SHong Zhang typedef const char *MatProductAlgorithm;
2643e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT         "default"
2653e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED          "sorted"
2663e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE        "scalable"
2673e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST    "scalable_fast"
2683e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP            "heap"
2693e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP           "btheap"
2703e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED     "llcondensed"
2713e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE        "rowmerge"
2723e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT    "outerproduct"
2733e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB             "at*b"
2743e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP             "rap"
2753e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE     "nonscalable"
2763e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI          "seqmpi"
2773e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND         "backend"
2783e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING     "overlapping"
2793e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED          "merged"
2803e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE       "allatonce"
2813e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged"
2823e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV      "allgatherv"
2833e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC          "cyclic"
2843e662e0bSHong Zhang #if defined(PETSC_HAVE_HYPRE)
2853e662e0bSHong Zhang   #define MATPRODUCTALGORITHMHYPRE "hypre"
2863e662e0bSHong Zhang #endif
2874222ddf1SHong Zhang 
2884222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *);
2894222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat);
2904222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType);
2914222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm);
2928fcac130SJose E. Roman PETSC_EXTERN PetscErrorCode MatProductGetAlgorithm(Mat, MatProductAlgorithm *);
2934222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal);
2944222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat);
2954222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat);
2964222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat);
2974222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat);
2984417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat);
2996718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer);
300c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *);
301c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *);
3024222ddf1SHong Zhang 
303c06d978dSMatthew Knepley /* Logging support */
3040700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */
305014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID;
306335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID;
307014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID;
308014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID;
309014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID;
310014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID;
311014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID;
312014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID;
313c06d978dSMatthew Knepley 
314ceb03754SKris Buschelman /*E
3152ef1f0ffSBarry Smith    MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions
316cf37664fSBarry Smith    are to be reused to store the new matrix values.
317cf37664fSBarry Smith 
3182ef1f0ffSBarry Smith    Values:
3192ef1f0ffSBarry Smith +  `MAT_INITIAL_MATRIX` - create a new matrix
3202ef1f0ffSBarry Smith .  `MAT_REUSE_MATRIX`   - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX`
3212ef1f0ffSBarry Smith .  `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions)
3222ef1f0ffSBarry Smith -  `MAT_IGNORE_MATRIX`  - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions)
323ceb03754SKris Buschelman 
324ceb03754SKris Buschelman     Level: beginner
325ceb03754SKris Buschelman 
3261cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()`
327ceb03754SKris Buschelman E*/
3289371c9d4SSatish Balay typedef enum {
3299371c9d4SSatish Balay   MAT_INITIAL_MATRIX,
3309371c9d4SSatish Balay   MAT_REUSE_MATRIX,
3319371c9d4SSatish Balay   MAT_IGNORE_MATRIX,
3329371c9d4SSatish Balay   MAT_INPLACE_MATRIX
3339371c9d4SSatish Balay } MatReuse;
334ceb03754SKris Buschelman 
3355494a064SHong Zhang /*E
3362ef1f0ffSBarry Smith     MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()`
3372ef1f0ffSBarry Smith     include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`.
3385494a064SHong Zhang 
3392ef1f0ffSBarry Smith     Values:
3402ef1f0ffSBarry Smith +  `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values
3412ef1f0ffSBarry Smith -  `MAT_GET_VALUES`        - copy the matrix values
3422ef1f0ffSBarry Smith 
34395bd0b28SBarry Smith     Level: developer
34495bd0b28SBarry Smith 
3452ef1f0ffSBarry Smith     Developer Note:
3462ef1f0ffSBarry Smith     Why is not just a boolean used for this information?
3472ef1f0ffSBarry Smith 
3481cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()`
3495494a064SHong Zhang E*/
3509371c9d4SSatish Balay typedef enum {
3519371c9d4SSatish Balay   MAT_DO_NOT_GET_VALUES,
3529371c9d4SSatish Balay   MAT_GET_VALUES
3539371c9d4SSatish Balay } MatCreateSubMatrixOption;
3545494a064SHong Zhang 
355607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void);
3564bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatFinalizePackage(void);
357c06d978dSMatthew Knepley 
358014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *);
35977433607SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFromOptions(MPI_Comm, const char *, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
360014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt);
36119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType);
3620d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *);
3630d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType);
364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat);
365fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]);
366bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat));
36723bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]);
368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]);
36926cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]);
37026cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]);
371014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]);
372014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]);
37384d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool);
374f69a0ea3SMatthew Knepley 
375140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList;
376140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList;
377140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList;
37828988994SBarry Smith 
3793b224e63SBarry Smith /*E
380aa6c7ce3SBarry Smith    MatStructure - Indicates if two matrices have the same nonzero structure
3813b224e63SBarry Smith 
3822ef1f0ffSBarry Smith    Values:
3832ef1f0ffSBarry Smith +  `SAME_NONZERO_PATTERN`      - the two matrices have identical nonzero patterns
3842ef1f0ffSBarry Smith .  `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns
3852ef1f0ffSBarry Smith .  `SUBSET_NONZERO_PATTERN`    - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix
3862ef1f0ffSBarry Smith -  `UNKNOWN_NONZERO_PATTERN`   - there is no known relationship between the nonzero patterns. In this case the implementations
3872ef1f0ffSBarry Smith                                  may try to detect a relationship to optimize the operation
388531d0c6aSBarry Smith 
38916a05f60SBarry Smith    Level: beginner
39016a05f60SBarry Smith 
391af27ebaaSBarry Smith    Note:
392af27ebaaSBarry Smith    Certain matrix operations (such as `MatAXPY()`) can run much faster if the sparsity pattern of the matrices are the same. But actually determining if
393af27ebaaSBarry Smith    the patterns are the same may be costly. This provides a way for users who know something about the sparsity patterns to provide this information
394af27ebaaSBarry Smith    to certain PETSc routines.
395af27ebaaSBarry Smith 
3961cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()`
3973b224e63SBarry Smith E*/
3989371c9d4SSatish Balay typedef enum {
3999371c9d4SSatish Balay   DIFFERENT_NONZERO_PATTERN,
4009371c9d4SSatish Balay   SUBSET_NONZERO_PATTERN,
4019371c9d4SSatish Balay   SAME_NONZERO_PATTERN,
4029371c9d4SSatish Balay   UNKNOWN_NONZERO_PATTERN
4039371c9d4SSatish Balay } MatStructure;
404d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[];
4053b224e63SBarry Smith 
4069779e05dSSatish Balay #if defined PETSC_HAVE_MKL_SPARSE
407ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
408ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
40980095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
410ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
41180095d54SIrina Sokolova #endif
412cd929ea3SAlp Dener 
4134bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
4144bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
4154bf303faSJacob Faibussowitsch 
416d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
417d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
418d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]);
419d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
42007e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *);
42107e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *);
42207e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *);
42307e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt);
424b921024eSHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *);
42580095d54SIrina Sokolova 
4264bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
4274bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
428fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
429fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetSeqSELL(Mat, Mat *, Mat *, const PetscInt *[]);
4304bf303faSJacob Faibussowitsch 
431014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
432014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
433014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
434014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
435014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4368f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4376a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]);
438014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *);
4393b00a383SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *);
4403b00a383SHong Zhang 
441014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
442014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
443014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4447e8381f9SStefano Zampini 
445e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]);
44682a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]);
4477e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode);
448d21a29f3SJed Brown 
449014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *);
450014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
451d21a29f3SJed Brown 
452014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
453014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
45438f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
455014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4564cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]);
457dfb205c3SBarry Smith 
458014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *);
459c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *);
460014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *);
461c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *);
462986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *);
463267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *);
464bcf2175cSMatthew Knepley PETSC_EXTERN PetscErrorCode MatLRCSetMats(Mat, Mat, Mat, Vec, Mat);
465c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *);
466014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
467014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
468c0cdd4a1SDahai Guo 
469014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *);
470014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter);
471014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *);
472014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *);
473014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat);
474014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat);
4759371c9d4SSatish Balay typedef enum {
4769371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_RIGHT,
4779371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_LEFT
4789371c9d4SSatish Balay } MatCompositeMergeType;
4798c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType);
480014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *);
4810da935d5SPierre Jolivet /*E
4820da935d5SPierre Jolivet     MatCompositeType - indicates what type of `MATCOMPOSITE` is used
4830da935d5SPierre Jolivet 
4840da935d5SPierre Jolivet     Values:
4850da935d5SPierre Jolivet +  `MAT_COMPOSITE_ADDITIVE`       - sum of matrices (default)
4860da935d5SPierre Jolivet -  `MAT_COMPOSITE_MULTIPLICATIVE` - product of matrices
4870da935d5SPierre Jolivet 
4880da935d5SPierre Jolivet     Level: beginner
4890da935d5SPierre Jolivet 
4900da935d5SPierre Jolivet .seealso: [](ch_matrices), `MATCOMPOSITE`, `MatCompositeSetType()`, `MatCompositeGetType()`
4910da935d5SPierre Jolivet E*/
4929371c9d4SSatish Balay typedef enum {
4939371c9d4SSatish Balay   MAT_COMPOSITE_ADDITIVE,
4949371c9d4SSatish Balay   MAT_COMPOSITE_MULTIPLICATIVE
4959371c9d4SSatish Balay } MatCompositeType;
496014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType);
4976dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *);
4983b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure);
4993b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *);
5006d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *);
5018b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *);
50203049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *);
5036d7c1e57SBarry Smith 
50419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *);
505014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *);
506dedccee8SHong Zhang 
507014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *);
5088060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *);
509d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *);
51006511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *);
511fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *);
51265f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *);
51354e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *);
51454e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS);
515014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *);
5163423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *);
517345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatCreateDiagonal(Vec, Mat *);
518345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetDiagonal(Mat, Vec *);
519345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreDiagonal(Mat, Vec *);
520345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetInverseDiagonal(Mat, Vec *);
521345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreInverseDiagonal(Mat, Vec *);
5221472f72bSBarry Smith 
523978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE)
524d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
525978814f1SStefano Zampini #endif
526978814f1SStefano Zampini 
527014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]);
528ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]);
5291d6018f0SLisandro Dalcin 
530846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat);
531014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat);
532014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *);
533e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *);
53421c89e3eSBarry Smith 
535014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat);
536014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat);
537014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat);
538014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *);
539014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *);
540713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **);
5410da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *);
542479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat);
5438a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *);
54420c04d79SPierre Jolivet PETSC_EXTERN PetscErrorCode MatComputeVariableBlockEnvelope(Mat);
54599cafbc1SBarry Smith 
546014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
5478a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode);
548014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
549014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]);
550014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]);
551014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]);
55273a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom);
55384cb2905SBarry Smith 
5542ef4de8bSBarry Smith /*S
5552ef1f0ffSBarry Smith    MatStencil - Data structure (C struct) for storing information about rows and
5562ef1f0ffSBarry Smith    columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()`
55762ef0227SBarry Smith 
5582ef1f0ffSBarry Smith    Level: beginner
5592ef1f0ffSBarry Smith 
5602ef1f0ffSBarry Smith    Notes:
56162ef0227SBarry Smith    The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored).
56215229ffcSPierre Jolivet    The c represents the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored.
56362ef0227SBarry Smith 
56487497f52SBarry Smith    For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`.
565be479b30SJed Brown 
5662ef1f0ffSBarry Smith    For staggered grids, see `DMStagStencil`
5672ef4de8bSBarry Smith 
5682ef1f0ffSBarry Smith    Fortran Note:
5692ef1f0ffSBarry Smith    See `MatSetValuesStencil()` for details.
5702ef4de8bSBarry Smith 
5711cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`,
5722ef1f0ffSBarry Smith           `DMStagStencil`
5732ef4de8bSBarry Smith S*/
574435da068SBarry Smith typedef struct {
575c1ac3661SBarry Smith   PetscInt k, j, i, c;
576435da068SBarry Smith } MatStencil;
5772ef4de8bSBarry Smith 
578014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
579014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
580014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt);
581435da068SBarry Smith 
582d91e6319SBarry Smith /*E
5832ef1f0ffSBarry Smith     MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use
584d91e6319SBarry Smith 
5852ef1f0ffSBarry Smith     Values:
5862ef1f0ffSBarry Smith +   `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix
5872ef1f0ffSBarry Smith -   `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted
5882ef1f0ffSBarry Smith 
58916a05f60SBarry Smith     Level: beginner
59016a05f60SBarry Smith 
5911cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()`
592d91e6319SBarry Smith E*/
5939371c9d4SSatish Balay typedef enum {
5949371c9d4SSatish Balay   MAT_FLUSH_ASSEMBLY = 1,
5959371c9d4SSatish Balay   MAT_FINAL_ASSEMBLY = 0
5969371c9d4SSatish Balay } MatAssemblyType;
5974f58015eSStefano Zampini 
598014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType);
599014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType);
600014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *);
6014f9c727eSBarry Smith 
602d91e6319SBarry Smith /*E
6032ef1f0ffSBarry Smith    MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage
604d91e6319SBarry Smith 
605d91e6319SBarry Smith    Level: beginner
606d91e6319SBarry Smith 
6072ef1f0ffSBarry Smith    Note:
6082ef1f0ffSBarry Smith    See `MatSetOption()` for the use of the options
6092ef1f0ffSBarry Smith 
6102ef1f0ffSBarry Smith    Developer Note:
61195452b02SPatrick Sanan    Entries that are negative need not be called collectively by all processes.
612382164b0SBarry Smith 
6131cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetOption()`
614d91e6319SBarry Smith E*/
6159371c9d4SSatish Balay typedef enum {
6169371c9d4SSatish Balay   MAT_OPTION_MIN                  = -3,
617c5e4d11fSDmitry Karpeev   MAT_UNUSED_NONZERO_LOCATION_ERR = -2,
61892d4d306SBarry Smith   MAT_ROW_ORIENTED                = -1,
619382164b0SBarry Smith   MAT_SYMMETRIC                   = 1,
620382164b0SBarry Smith   MAT_STRUCTURALLY_SYMMETRIC      = 2,
6218c78258cSHong Zhang   MAT_FORCE_DIAGONAL_ENTRIES      = 3,
622382164b0SBarry Smith   MAT_IGNORE_OFF_PROC_ENTRIES     = 4,
623382164b0SBarry Smith   MAT_USE_HASH_TABLE              = 5,
624382164b0SBarry Smith   MAT_KEEP_NONZERO_PATTERN        = 6,
625382164b0SBarry Smith   MAT_IGNORE_ZERO_ENTRIES         = 7,
626382164b0SBarry Smith   MAT_USE_INODES                  = 8,
627382164b0SBarry Smith   MAT_HERMITIAN                   = 9,
628382164b0SBarry Smith   MAT_SYMMETRY_ETERNAL            = 10,
629c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_LOCATION_ERR    = 11,
630382164b0SBarry Smith   MAT_IGNORE_LOWER_TRIANGULAR     = 12,
631382164b0SBarry Smith   MAT_ERROR_LOWER_TRIANGULAR      = 13,
632382164b0SBarry Smith   MAT_GETROW_UPPERTRIANGULAR      = 14,
633382164b0SBarry Smith   MAT_SPD                         = 15,
63492d4d306SBarry Smith   MAT_NO_OFF_PROC_ZERO_ROWS       = 16,
63592d4d306SBarry Smith   MAT_NO_OFF_PROC_ENTRIES         = 17,
63692d4d306SBarry Smith   MAT_NEW_NONZERO_LOCATIONS       = 18,
637c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_ALLOCATION_ERR  = 19,
638c5e4d11fSDmitry Karpeev   MAT_SUBSET_OFF_PROC_ENTRIES     = 20,
639c10200c1SHong Zhang   MAT_SUBMAT_SINGLEIS             = 21,
640957cac9fSHong Zhang   MAT_STRUCTURE_ONLY              = 22,
641071fcb05SBarry Smith   MAT_SORTED_FULL                 = 23,
6421a2c6b5cSJunchao Zhang   MAT_FORM_EXPLICIT_TRANSPOSE     = 24,
643b94d7dedSBarry Smith   MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25,
644b94d7dedSBarry Smith   MAT_SPD_ETERNAL                 = 26,
6459371c9d4SSatish Balay   MAT_OPTION_MAX                  = 27
6469371c9d4SSatish Balay } MatOption;
647e057df02SPaul Mullowney 
6480f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions;
649014dd563SJed Brown PETSC_EXTERN PetscErrorCode     MatSetOption(Mat, MatOption, PetscBool);
6507d68702bSBarry Smith PETSC_EXTERN PetscErrorCode     MatGetOption(Mat, MatOption, PetscBool *);
651856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode     MatPropagateSymmetryOptions(Mat, Mat);
65219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode     MatGetType(Mat, MatType *);
65384cb2905SBarry Smith 
654014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
655014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
656014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
657014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRowUpperTriangular(Mat);
658014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRowUpperTriangular(Mat);
659014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetColumnVector(Mat, Vec, PetscInt);
6608c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArray(Mat, PetscScalar *[]);
6618f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]);
662d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]);
6638c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArray(Mat, PetscScalar *[]);
6648f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]);
665d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]);
66621e72a00SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *);
667bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
6684099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetType(Mat, MatType);
669ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode    MatSeqAIJKron(Mat, Mat, MatReuse, Mat *);
670388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode    MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *));
6714099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList;
672cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJGetArray(Mat, PetscScalar *[]);
673cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJRestoreArray(Mat, PetscScalar *[]);
6748397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJGetArray(Mat, PetscScalar *[]);
6758397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]);
6768c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArray(Mat, PetscScalar *[]);
6778c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArray(Mat, PetscScalar *[]);
678d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDensePlaceArray(Mat, const PetscScalar[]);
679d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseReplaceArray(Mat, const PetscScalar[]);
680d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseResetArray(Mat);
6818572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArrayRead(Mat, const PetscScalar *[]);
6828572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayRead(Mat, const PetscScalar *[]);
6836947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWrite(Mat, PetscScalar *[]);
6846947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWrite(Mat, PetscScalar *[]);
685cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *);
686cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]);
687cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *);
688cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]);
689cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *);
690cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]);
691014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSize(Mat, PetscInt *);
692014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSize(Mat, PetscInt);
693014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSizes(Mat, PetscInt *, PetscInt *);
694014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizes(Mat, PetscInt, PetscInt);
69533d57670SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizesFromMats(Mat, Mat, Mat);
6960da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode    MatSetVariableBlockSizes(Mat, PetscInt, PetscInt *);
6970da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode    MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt **);
6980da83c2eSBarry Smith 
69986aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]);
70086aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]);
7016947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *);
7026947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *);
7036947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *);
7046947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *);
7056947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *);
7066947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *);
707a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
7085ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *);
7091620fd73SBarry Smith 
710014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec);
711014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec);
712014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec);
713014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec);
714014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec);
715014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *);
716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *);
717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec);
718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec);
719014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat);
720bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat);
721eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat);
722f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec);
723f5edf698SHong Zhang 
724d91e6319SBarry Smith /*E
725d91e6319SBarry Smith   MatDuplicateOption - Indicates if a duplicated sparse matrix should have
726d91e6319SBarry Smith   its numerical values copied over or just its nonzero structure.
727d91e6319SBarry Smith 
7282ef1f0ffSBarry Smith   Values:
7292ef1f0ffSBarry Smith + `MAT_DO_NOT_COPY_VALUES`    - Create a matrix using the same nonzero pattern as the original matrix,
7302ef1f0ffSBarry Smith                                 with zeros for the numerical values
7312ef1f0ffSBarry Smith . `MAT_COPY_VALUES`           - Create a matrix with the same nonzero pattern as the original matrix
7322ef1f0ffSBarry Smith                                 and with the same numerical values.
7332ef1f0ffSBarry Smith - `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix
7342ef1f0ffSBarry Smith                                 and does not copy it, using zeros for the numerical values. The parent and
7352ef1f0ffSBarry Smith                                 child matrices will share their index (i and j) arrays, and you cannot
7362ef1f0ffSBarry Smith                                 insert new nonzero entries into either matrix
7370018da39SRichard Tran Mills 
73816a05f60SBarry Smith   Level: beginner
73916a05f60SBarry Smith 
74087497f52SBarry Smith   Note:
74187497f52SBarry Smith   Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in
74287497f52SBarry Smith   this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified.
74370dcbbb9SBarry Smith 
7441cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicate()`
745d91e6319SBarry Smith E*/
7469371c9d4SSatish Balay typedef enum {
7479371c9d4SSatish Balay   MAT_DO_NOT_COPY_VALUES,
7489371c9d4SSatish Balay   MAT_COPY_VALUES,
7499371c9d4SSatish Balay   MAT_SHARE_NONZERO_PATTERN
7509371c9d4SSatish Balay } MatDuplicateOption;
7512e8a6d31SBarry Smith 
75219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *);
753014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *);
75494a9d846SBarry Smith 
755014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure);
756014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer);
757014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *);
758014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *);
759014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *);
760014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *);
761014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *);
762b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *);
763b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *);
764014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *);
765014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer);
7667b80b807SBarry Smith 
7671a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7681a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7691a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7701a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
771d4fbbf0eSBarry Smith 
772d91e6319SBarry Smith /*S
77387497f52SBarry Smith    MatInfo - Context of matrix information, used with `MatGetInfo()`
774d91e6319SBarry Smith 
775d91e6319SBarry Smith    Level: intermediate
776d91e6319SBarry Smith 
7772ef1f0ffSBarry Smith    Fortran Note:
7782ef1f0ffSBarry Smith    Information is stored as a double-precision array of dimension `MAT_INFO_SIZE`
7792ef1f0ffSBarry Smith 
7801cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetInfo()`, `MatInfoType`
781d91e6319SBarry Smith S*/
7824e220ebcSLois Curfman McInnes typedef struct {
783b0a32e0cSBarry Smith   PetscLogDouble block_size;                          /* block size */
784b0a32e0cSBarry Smith   PetscLogDouble nz_allocated, nz_used, nz_unneeded;  /* number of nonzeros */
785b0a32e0cSBarry Smith   PetscLogDouble memory;                              /* memory allocated */
786b0a32e0cSBarry Smith   PetscLogDouble assemblies;                          /* number of matrix assemblies called */
787b0a32e0cSBarry Smith   PetscLogDouble mallocs;                             /* number of mallocs during MatSetValues() */
788b0a32e0cSBarry Smith   PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */
789b0a32e0cSBarry Smith   PetscLogDouble factor_mallocs;                      /* number of mallocs during factorization */
7904e220ebcSLois Curfman McInnes } MatInfo;
7914e220ebcSLois Curfman McInnes 
792d9274352SBarry Smith /*E
793d9274352SBarry Smith     MatInfoType - Indicates if you want information about the local part of the matrix,
794d9274352SBarry Smith     the entire parallel matrix or the maximum over all the local parts.
795d9274352SBarry Smith 
7962ef1f0ffSBarry Smith     Values:
7972ef1f0ffSBarry Smith +   `MAT_LOCAL`      - values for each MPI process part of the matrix
7982ef1f0ffSBarry Smith .   `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes
7992ef1f0ffSBarry Smith -   `MAT_GLOBAL_SUM` - sum of each value over all MPI processes
800d9274352SBarry Smith 
80116a05f60SBarry Smith     Level: beginner
80216a05f60SBarry Smith 
8031cc06b55SBarry Smith .seealso: [](ch_matrices), `MatGetInfo()`, `MatInfo`
804d9274352SBarry Smith E*/
8059371c9d4SSatish Balay typedef enum {
8069371c9d4SSatish Balay   MAT_LOCAL      = 1,
8079371c9d4SSatish Balay   MAT_GLOBAL_MAX = 2,
8089371c9d4SSatish Balay   MAT_GLOBAL_SUM = 3
8099371c9d4SSatish Balay } MatInfoType;
810014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *);
811014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec);
812014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]);
813014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]);
814014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]);
815eede4a3fSMark Adams PETSC_EXTERN PetscErrorCode MatGetRowSumAbs(Mat, Vec);
816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]);
817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec);
818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *);
8197fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *);
8207fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat);
821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *);
822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *);
823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec);
824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode);
825a52676ecSHong Zhang 
826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *);
827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *);
828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *);
829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
830014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
831e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
832e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
833a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
834a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
835cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
8364222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
837447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
83886919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *);
8397b80b807SBarry Smith 
840014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *);
841014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *);
842857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *);
843857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *);
844857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *);
845857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *);
846857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *);
847857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *);
848857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *);
849014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat);
8501b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat);
851014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
852014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec);
853014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
854014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
855014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
856014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec);
8577b80b807SBarry Smith 
858014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *);
859014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *);
860014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *);
861014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **);
862014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *);
863014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **);
864566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *);
8655ef9f2a5SBarry Smith 
8667dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
867edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrices()", ) static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
868d71ae5a4SJacob Faibussowitsch {
8699371c9d4SSatish Balay   return MatCreateSubMatrices(mat, n, irow, icol, scall, submat);
8709371c9d4SSatish Balay }
8717dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
872edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatricesMPI()", ) static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
873d71ae5a4SJacob Faibussowitsch {
8749371c9d4SSatish Balay   return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat);
8759371c9d4SSatish Balay }
876014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]);
877df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]);
8787dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *);
879edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrix()", ) static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat)
880d71ae5a4SJacob Faibussowitsch {
8819371c9d4SSatish Balay   return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat);
8829371c9d4SSatish Balay }
883014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *);
884014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *);
885014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *);
886014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *);
8877b80b807SBarry Smith 
888014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *);
889014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *);
890014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat);
891014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *);
8928a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *);
893014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
894ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *);
895f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *);
896014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *);
897014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]);
8988efafbd8SBarry Smith 
899014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt);
900aa1e27eaSFande Kong PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov);
901d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool);
9027b80b807SBarry Smith 
903014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
90422440eb1SKris Buschelman 
9057bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
9062df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
9077bab7c10SHong Zhang 
908014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *);
909014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *);
91022440eb1SKris Buschelman 
911014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
912014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *);
913bc011b1eSHong Zhang 
914014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure);
915014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure);
9161c741599SHong Zhang 
917014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar);
918014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar);
9197b80b807SBarry Smith 
920014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping);
921014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
922a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *);
92381fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout);
924014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
925014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
926014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
927014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
928e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
929014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
930014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
931052efed2SBarry Smith 
932014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt);
933014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *);
93490f02eecSBarry Smith 
935014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec);
936014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec);
937014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec);
93830b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *);
93930b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *);
94030b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *);
9412a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *);
942edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 6, 0, "MatCreateVecs()", ) static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y)
943d71ae5a4SJacob Faibussowitsch {
9449371c9d4SSatish Balay   return MatCreateVecs(mat, x, y);
9459371c9d4SSatish Balay }
94653cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *);
947014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *);
948014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *);
9493a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *);
9509c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *);
951bd481603SBarry Smith 
952c8d6c325SJunchao Zhang /*@C
9531620fd73SBarry Smith    MatSetValue - Set a single entry into a matrix.
9541620fd73SBarry Smith 
955e1c5b2e2SJose E. Roman    Not Collective
956a9834a7dSSatish Balay 
9571620fd73SBarry Smith    Input Parameters:
958c8d6c325SJunchao Zhang +  mat  - the matrix
95916a05f60SBarry Smith .  i    - the row location of the entry
96016a05f60SBarry Smith .  j    - the column location of the entry
96116a05f60SBarry Smith .  va   - the value to insert
96287497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
9631620fd73SBarry Smith 
9641620fd73SBarry Smith    Level: beginner
9651620fd73SBarry Smith 
96695bd0b28SBarry Smith    Notes:
96795bd0b28SBarry Smith    This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()`
96895bd0b28SBarry Smith    MUST be called after all calls to `MatSetValue()` have been completed.
96995bd0b28SBarry Smith 
9702ef1f0ffSBarry Smith    For efficiency one should use `MatSetValues()` and set several values simultaneously.
9712ef1f0ffSBarry Smith 
972b43fc34aSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `InsertMode`, `MatGetValue()`, `MatSetValues()`,
9732ef1f0ffSBarry Smith           `MatSetValueLocal()`, `MatSetValuesLocal()`
974c8d6c325SJunchao Zhang @*/
975c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValue(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
976d71ae5a4SJacob Faibussowitsch {
977c8d6c325SJunchao Zhang   return MatSetValues(mat, 1, &i, 1, &j, &va, mode);
9789371c9d4SSatish Balay }
9791620fd73SBarry Smith 
980e5e5a7b5SPatrick Sanan /*@C
981e5e5a7b5SPatrick Sanan    MatGetValue - Gets a single value from a matrix
9821620fd73SBarry Smith 
983e5e5a7b5SPatrick Sanan    Not Collective; can only return a value owned by the given process
984e5e5a7b5SPatrick Sanan 
985e5e5a7b5SPatrick Sanan    Input Parameters:
986e5e5a7b5SPatrick Sanan +  mat - the matrix
987e5e5a7b5SPatrick Sanan .  row - the row location of the entry
988e5e5a7b5SPatrick Sanan -  col - the column location of the entry
989e5e5a7b5SPatrick Sanan 
990e5e5a7b5SPatrick Sanan    Output Parameter:
991e5e5a7b5SPatrick Sanan .  va - the value
992e5e5a7b5SPatrick Sanan 
9932ef1f0ffSBarry Smith    Level: advanced
9942ef1f0ffSBarry Smith 
995e5e5a7b5SPatrick Sanan    Notes:
996b43fc34aSPierre Jolivet    The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd()` before this call
9972ef1f0ffSBarry Smith 
99887497f52SBarry Smith    For efficiency one should use `MatGetValues()` and get several values simultaneously.
999e5e5a7b5SPatrick Sanan 
100087497f52SBarry Smith    See notes for `MatGetValues()`.
1001e5e5a7b5SPatrick Sanan 
1002b43fc34aSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()`
1003e5e5a7b5SPatrick Sanan @*/
1004d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va)
1005d71ae5a4SJacob Faibussowitsch {
10069371c9d4SSatish Balay   return MatGetValues(mat, 1, &row, 1, &col, va);
10079371c9d4SSatish Balay }
1008e5e5a7b5SPatrick Sanan 
1009c8d6c325SJunchao Zhang /*@C
10102ef1f0ffSBarry Smith    MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes.
1011e5e5a7b5SPatrick Sanan 
1012e5e5a7b5SPatrick Sanan    Not Collective
1013e5e5a7b5SPatrick Sanan 
1014e5e5a7b5SPatrick Sanan    Input Parameters:
1015c8d6c325SJunchao Zhang +  mat  - the matrix
101616a05f60SBarry Smith .  i    - the row location of the entry
101716a05f60SBarry Smith .  j    - the column location of the entry
101816a05f60SBarry Smith .  va   - the value to insert
101987497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
1020e5e5a7b5SPatrick Sanan 
10212ef1f0ffSBarry Smith    Level: intermediate
10222ef1f0ffSBarry Smith 
1023e5e5a7b5SPatrick Sanan    Notes:
102487497f52SBarry Smith    For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously.
1025e5e5a7b5SPatrick Sanan 
102687497f52SBarry Smith    See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used.
1027e5e5a7b5SPatrick Sanan 
10281cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSetValue()`, `MatSetValuesLocal()`
1029c8d6c325SJunchao Zhang @*/
1030c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValueLocal(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
1031d71ae5a4SJacob Faibussowitsch {
1032c8d6c325SJunchao Zhang   return MatSetValuesLocal(mat, 1, &i, 1, &j, &va, mode);
10339371c9d4SSatish Balay }
10341620fd73SBarry Smith 
10351620fd73SBarry Smith /*MC
1036d0609cedSBarry Smith    MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per
1037bd481603SBarry Smith    row in a matrix providing the data that one can use to correctly preallocate the matrix.
1038bd481603SBarry Smith 
1039bd481603SBarry Smith    Synopsis:
1040aaa7dc30SBarry Smith    #include <petscmat.h>
1041d0609cedSBarry Smith    PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz)
1042bd481603SBarry Smith 
1043d083f849SBarry Smith    Collective
1044bd481603SBarry Smith 
1045bd481603SBarry Smith    Input Parameters:
1046bd481603SBarry Smith +  comm  - the communicator that will share the eventually allocated matrix
1047859fcb39SBarry Smith .  nrows - the number of LOCAL rows in the matrix
1048859fcb39SBarry Smith -  ncols - the number of LOCAL columns in the matrix
1049bd481603SBarry Smith 
1050bd481603SBarry Smith    Output Parameters:
1051bd481603SBarry Smith +  dnz - the array that will be passed to the matrix preallocation routines
1052a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1053bd481603SBarry Smith 
10542ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1055bd481603SBarry Smith 
1056bd481603SBarry Smith    Notes:
10572ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
10582ef1f0ffSBarry Smith    the use of this routine
10592ef1f0ffSBarry Smith 
1060d0609cedSBarry Smith    This is a macro that handles its own error checking, it does not return an error code.
1061d0609cedSBarry Smith 
10622ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1063bd481603SBarry Smith 
10642ef1f0ffSBarry Smith    Developer Note:
1065af27ebaaSBarry Smith    This is a MACRO, not a function, because it has a leading { that is closed by `PetscPreallocateFinalize()`.
1066bd481603SBarry Smith 
10671cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1068db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1069bd481603SBarry Smith M*/
10709371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \
10719371c9d4SSatish Balay   do { \
10723ba16761SJacob Faibussowitsch     PetscInt              __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \
10733ba16761SJacob Faibussowitsch     PetscInt PETSC_UNUSED __start; \
10749566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \
10759566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \
10769371c9d4SSatish Balay     __start = __end - __ncols; \
10779371c9d4SSatish Balay     (void)__start; \
10789566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \
10795f80ce2aSJacob Faibussowitsch   __rstart -= __nrows
10807c922b88SBarry Smith 
1081edd03b47SJacob Faibussowitsch #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateBegin()", ) MatPreallocateBegin(__VA_ARGS__)
1082d0609cedSBarry Smith 
1083bd481603SBarry Smith /*MC
1084bd481603SBarry Smith    MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1085bd481603SBarry Smith    inserted using a local number of the rows and columns
1086bd481603SBarry Smith 
1087bd481603SBarry Smith    Synopsis:
1088aaa7dc30SBarry Smith    #include <petscmat.h>
1089c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1090bd481603SBarry Smith 
1091bd481603SBarry Smith    Not Collective
1092bd481603SBarry Smith 
1093bd481603SBarry Smith    Input Parameters:
1094784ac674SJed Brown +  map   - the row mapping from local numbering to global numbering
1095bd481603SBarry Smith .  nrows - the number of rows indicated
10961d73ed98SBarry Smith .  rows  - the indices of the rows
1097784ac674SJed Brown .  cmap  - the column mapping from local to global numbering
1098bd481603SBarry Smith .  ncols - the number of columns in the matrix
1099bd481603SBarry Smith .  cols  - the columns indicated
1100bd481603SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1101a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1102bd481603SBarry Smith 
11032ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1104bd481603SBarry Smith 
1105bd481603SBarry Smith    Notes:
11062ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11072ef1f0ffSBarry Smith    the use of this routine
1108bd481603SBarry Smith 
11092ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1110bd481603SBarry Smith 
11111cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1112db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()`
1113bd481603SBarry Smith M*/
111494bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11159371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1116c4f061fbSSatish Balay 
1117bd481603SBarry Smith /*MC
1118c1154cd5SBarry Smith    MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1119c1154cd5SBarry Smith    inserted using a local number of the rows and columns. This version removes any duplicate columns in cols
1120c1154cd5SBarry Smith 
1121c1154cd5SBarry Smith    Synopsis:
1122c1154cd5SBarry Smith    #include <petscmat.h>
1123c1154cd5SBarry Smith    PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1124c1154cd5SBarry Smith 
1125c1154cd5SBarry Smith    Not Collective
1126c1154cd5SBarry Smith 
1127c1154cd5SBarry Smith    Input Parameters:
1128c1154cd5SBarry Smith +  map   - the row mapping from local numbering to global numbering
1129c1154cd5SBarry Smith .  nrows - the number of rows indicated
1130c1154cd5SBarry Smith .  rows  - the indices of the rows (these values are mapped to the global values)
1131c1154cd5SBarry Smith .  cmap  - the column mapping from local to global numbering
1132c1154cd5SBarry Smith .  ncols - the number of columns in the matrix   (this value will be changed if duplicate columns are found)
1133c1154cd5SBarry Smith .  cols  - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed)
1134c1154cd5SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1135a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1136c1154cd5SBarry Smith 
11372ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1138c1154cd5SBarry Smith 
1139c1154cd5SBarry Smith    Notes:
11402ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11412ef1f0ffSBarry Smith    the use of this routine
1142c1154cd5SBarry Smith 
11432ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1144c1154cd5SBarry Smith 
11451cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1146db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1147c1154cd5SBarry Smith M*/
114894bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11499371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1150c1154cd5SBarry Smith 
1151c1154cd5SBarry Smith /*MC
1152d6e23781SBarry Smith    MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1153bd481603SBarry Smith    inserted using a local number of the rows and columns
1154bd481603SBarry Smith 
1155bd481603SBarry Smith    Synopsis:
1156aaa7dc30SBarry Smith    #include <petscmat.h>
1157d6e23781SBarry Smith    PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1158d6e23781SBarry Smith 
1159d6e23781SBarry Smith    Not Collective
1160d6e23781SBarry Smith 
1161d6e23781SBarry Smith    Input Parameters:
1162d6e23781SBarry Smith +  map   - the row mapping from local numbering to global numbering
1163d6e23781SBarry Smith .  nrows - the number of rows indicated
1164d6e23781SBarry Smith .  rows  - the indices of the rows
1165d6e23781SBarry Smith .  cmap  - the column mapping from local to global numbering
1166d6e23781SBarry Smith .  ncols - the number of columns in the matrix
1167d6e23781SBarry Smith .  cols  - the columns indicated
1168d6e23781SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1169a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1170d6e23781SBarry Smith 
11712ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1172d6e23781SBarry Smith 
1173d6e23781SBarry Smith    Notes:
11742ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11752ef1f0ffSBarry Smith    the use of this routine
1176d6e23781SBarry Smith 
11772ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1178d6e23781SBarry Smith 
11791cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1180db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`
1181d6e23781SBarry Smith M*/
118294bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11839371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1184d6e23781SBarry Smith 
1185d6e23781SBarry Smith /*MC
1186d6e23781SBarry Smith    MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1187d6e23781SBarry Smith    inserted using a local number of the rows and columns
1188d6e23781SBarry Smith 
1189d6e23781SBarry Smith    Synopsis:
1190d6e23781SBarry Smith    #include <petscmat.h>
1191d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1192bd481603SBarry Smith 
1193bd481603SBarry Smith    Not Collective
1194bd481603SBarry Smith 
1195bd481603SBarry Smith    Input Parameters:
1196bd481603SBarry Smith +  map   - the mapping between local numbering and global numbering
1197bd481603SBarry Smith .  nrows - the number of rows indicated
11981d73ed98SBarry Smith .  rows  - the indices of the rows
1199bd481603SBarry Smith .  ncols - the number of columns in the matrix
1200bd481603SBarry Smith .  cols  - the columns indicated
1201bd481603SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1202a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1203bd481603SBarry Smith 
12042ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1205bd481603SBarry Smith 
1206bd481603SBarry Smith    Notes:
12072ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12082ef1f0ffSBarry Smith    the use of this routine
1209bd481603SBarry Smith 
12102ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1211bd481603SBarry Smith 
12121cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`
1213db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1214bd481603SBarry Smith M*/
121594bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \
12169371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));)
1217e83a5d19SLisandro Dalcin 
1218bd481603SBarry Smith /*MC
1219bd481603SBarry Smith    MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1220bd481603SBarry Smith    inserted using a local number of the rows and columns
1221bd481603SBarry Smith 
1222bd481603SBarry Smith    Synopsis:
1223aaa7dc30SBarry Smith    #include <petscmat.h>
1224c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1225bd481603SBarry Smith 
1226bd481603SBarry Smith    Not Collective
1227bd481603SBarry Smith 
1228bd481603SBarry Smith    Input Parameters:
122964075487SBarry Smith +  row   - the row
1230bd481603SBarry Smith .  ncols - the number of columns in the matrix
1231a50f8bf6SHong Zhang -  cols  - the columns indicated
1232a50f8bf6SHong Zhang 
1233a50f8bf6SHong Zhang    Output Parameters:
1234a50f8bf6SHong Zhang +  dnz - the array that will be passed to the matrix preallocation routines
1235a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1236bd481603SBarry Smith 
12372ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1238bd481603SBarry Smith 
1239bd481603SBarry Smith    Notes:
12402ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12412ef1f0ffSBarry Smith    the use of this routine
1242bd481603SBarry Smith 
12432ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1244bd481603SBarry Smith 
1245af27ebaaSBarry Smith    This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin().
12461620fd73SBarry Smith 
12471cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1248db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1249bd481603SBarry Smith M*/
12509371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \
12519371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \
125264075487SBarry Smith     if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \
1253a6042fd4SStefano Zampini     else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12549371c9d4SSatish Balay   })
12557c922b88SBarry Smith 
1256bd481603SBarry Smith /*MC
1257d6e23781SBarry Smith    MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1258bd481603SBarry Smith    inserted using a local number of the rows and columns
1259bd481603SBarry Smith 
1260bd481603SBarry Smith    Synopsis:
1261aaa7dc30SBarry Smith    #include <petscmat.h>
1262d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1263bd481603SBarry Smith 
1264bd481603SBarry Smith    Not Collective
1265bd481603SBarry Smith 
1266bd481603SBarry Smith    Input Parameters:
1267bd481603SBarry Smith +  nrows - the number of rows indicated
12681d73ed98SBarry Smith .  rows  - the indices of the rows
1269bd481603SBarry Smith .  ncols - the number of columns in the matrix
1270bd481603SBarry Smith .  cols  - the columns indicated
1271bd481603SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1272a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1273bd481603SBarry Smith 
12742ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1275bd481603SBarry Smith 
1276bd481603SBarry Smith    Notes:
12772ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12782ef1f0ffSBarry Smith    the use of this routine
1279bd481603SBarry Smith 
12802ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1281bd481603SBarry Smith 
1282af27ebaaSBarry Smith    This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin().
12831620fd73SBarry Smith 
12841cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`,
1285db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1286bd481603SBarry Smith M*/
128794bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \
12889371c9d4SSatish Balay   PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \
1289d3d32019SBarry Smith     if (cols[__i] >= __end) onz[row - __rstart]++; \
1290a6042fd4SStefano Zampini     else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12919371c9d4SSatish Balay   })
1292d3d32019SBarry Smith 
1293bd481603SBarry Smith /*MC
1294a6042fd4SStefano Zampini    MatPreallocateLocation -  An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists
129516371a99SBarry Smith 
129616371a99SBarry Smith    Synopsis:
1297aaa7dc30SBarry Smith    #include <petscmat.h>
129816371a99SBarry Smith    PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz)
129916371a99SBarry Smith 
130016371a99SBarry Smith    Not Collective
130116371a99SBarry Smith 
130216371a99SBarry Smith    Input Parameters:
1303a2b725a8SWilliam Gropp +  A     - matrix
130416371a99SBarry Smith .  row   - row where values exist (must be local to this process)
130516371a99SBarry Smith .  ncols - number of columns
130616371a99SBarry Smith .  cols  - columns with nonzeros
130716371a99SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1308a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
130916371a99SBarry Smith 
13102ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
131116371a99SBarry Smith 
131216371a99SBarry Smith    Notes:
13132ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
13142ef1f0ffSBarry Smith    the use of this routine
131516371a99SBarry Smith 
13162ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
131716371a99SBarry Smith 
1318af27ebaaSBarry Smith    Developer Note:
1319af27ebaaSBarry Smith    This is a MACRO, not a function, because it uses a bunch of variables private to the MatPreallocation.... routines.
132016371a99SBarry Smith 
13211cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1322db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
132316371a99SBarry Smith M*/
1324d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz))
132516371a99SBarry Smith 
132616371a99SBarry Smith /*MC
1327d0609cedSBarry Smith    MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per
1328bd481603SBarry Smith    row in a matrix providing the data that one can use to correctly preallocate the matrix.
1329bd481603SBarry Smith 
1330bd481603SBarry Smith    Synopsis:
1331aaa7dc30SBarry Smith    #include <petscmat.h>
1332d0609cedSBarry Smith    PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz)
1333bd481603SBarry Smith 
1334d083f849SBarry Smith    Collective
1335bd481603SBarry Smith 
1336bd481603SBarry Smith    Input Parameters:
133716371a99SBarry Smith +  dnz - the array that was be passed to the matrix preallocation routines
1338a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1339bd481603SBarry Smith 
13402ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1341bd481603SBarry Smith 
1342bd481603SBarry Smith    Notes:
13432ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
13442ef1f0ffSBarry Smith    the use of this routine
1345d0609cedSBarry Smith 
13462ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1347bd481603SBarry Smith 
13482ef1f0ffSBarry Smith    Developer Note:
1349af27ebaaSBarry Smith    This is a MACRO, not a function, because it closes the { started in MatPreallocateBegin().
13501620fd73SBarry Smith 
13511cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1352db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1353bd481603SBarry Smith M*/
13549371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \
13559371c9d4SSatish Balay   PetscCall(PetscFree2(dnz, onz)); \
13569371c9d4SSatish Balay   } \
13579371c9d4SSatish Balay   while (0)
1358d0609cedSBarry Smith 
1359edd03b47SJacob Faibussowitsch #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateEnd()", ) MatPreallocateEnd(__VA_ARGS__)
13607c922b88SBarry Smith 
13617b80b807SBarry Smith /* Routines unique to particular data structures */
1362014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *);
1363698d4c6aSKris Buschelman 
1364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *);
1365014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *);
1366698d4c6aSKris Buschelman 
1367014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]);
1368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]);
1369014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1370014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1371014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1372014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool);
13737b80b807SBarry Smith 
1374a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4
1375a96a251dSBarry Smith 
1376014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1377014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1378014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]);
137919b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt);
1380273d9f13SBarry Smith 
1381014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1382014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1383014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1384014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1385014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1386014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1387014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1388014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]);
1389b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *);
1390252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *);
1391014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]);
1392014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]);
13939230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
13949230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
1395014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *);
1396273d9f13SBarry Smith 
139749a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *);
1398ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt);
1399edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatDenseSetLDA()", ) static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda)
1400d71ae5a4SJacob Faibussowitsch {
14019371c9d4SSatish Balay   return MatDenseSetLDA(A, lda);
14029371c9d4SSatish Balay }
1403014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *);
14041b807ce4Svictorle 
1405621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1406621e819fSSatish Balay 
1407014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat);
1408014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat);
14092e8a6d31SBarry Smith 
1410014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *);
14117cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *);
14127b80b807SBarry Smith /*
14137b80b807SBarry Smith   These routines are not usually accessed directly, rather solving is
141494b7f48cSBarry Smith   done through the KSP and PC interfaces.
14157b80b807SBarry Smith */
14167b80b807SBarry Smith 
141776bdecfbSBarry Smith /*J
14182ef1f0ffSBarry Smith    MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used
14192ef1f0ffSBarry Smith    to reduce fill in sparse factorizations.
1420d9274352SBarry Smith 
1421d9274352SBarry Smith    Level: beginner
1422d9274352SBarry Smith 
14232c7c0729SBarry Smith    Notes:
142416a05f60SBarry Smith    If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one
142516a05f60SBarry Smith    of its own.
14262c7c0729SBarry Smith 
14272ef1f0ffSBarry Smith    There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()`
14282ef1f0ffSBarry Smith 
14292ef1f0ffSBarry Smith    Developer Note:
14302ef1f0ffSBarry Smith    This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning`
14312ef1f0ffSBarry Smith 
14321cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`,
14332ef1f0ffSBarry Smith           `PCFactorSetOrderingType()`
143476bdecfbSBarry Smith J*/
143519fd82e9SBarry Smith typedef const char *MatOrderingType;
14362692d6eeSBarry Smith #define MATORDERINGNATURAL       "natural"
14372692d6eeSBarry Smith #define MATORDERINGND            "nd"
14382692d6eeSBarry Smith #define MATORDERING1WD           "1wd"
14392692d6eeSBarry Smith #define MATORDERINGRCM           "rcm"
14402692d6eeSBarry Smith #define MATORDERINGQMD           "qmd"
14412692d6eeSBarry Smith #define MATORDERINGROWLENGTH     "rowlength"
1442510184a7SJed Brown #define MATORDERINGWBM           "wbm"
1443fc1bef75SJed Brown #define MATORDERINGSPECTRAL      "spectral"
1444312e372aSBarry Smith #define MATORDERINGAMD           "amd"           /* only works if UMFPACK is installed with PETSc */
1445048412efSPablo Brubeck #define MATORDERINGMETISND       "metisnd"       /* only works if METIS is installed with PETSc */
14469bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */
14472c7c0729SBarry Smith #define MATORDERINGEXTERNAL      "external"      /* uses an ordering type internal to the factorization package */
1448b12f92e5SBarry Smith 
144919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrdering(Mat, MatOrderingType, IS *, IS *);
1450140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrderingList(PetscFunctionList *);
1451bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode    MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *));
1452140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList;
1453d4fbbf0eSBarry Smith 
1454013e2dc7SBarry Smith #include "petscmatcoarsen.h"
1455013e2dc7SBarry Smith 
1456014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS);
1457fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *);
1458a2ce50c7SBarry Smith 
14594ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *);
14604ac6704cSBarry Smith 
1461d91e6319SBarry Smith /*S
14622ef1f0ffSBarry Smith    MatFactorShiftType - Type of numeric shift used for factorizations
1463d90ac83dSHong Zhang 
14642ef1f0ffSBarry Smith    Values:
14652ef1f0ffSBarry Smith +  `MAT_SHIFT_NONE`              - do not shift the matrix diagonal entries
14662ef1f0ffSBarry Smith .  `MAT_SHIFT_NONZERO`           - shift the entries to be non-zero
14672ef1f0ffSBarry Smith .  `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite
14682ef1f0ffSBarry Smith -  `MAT_SHIFT_INBLOCKS`          - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ`
1469d90ac83dSHong Zhang 
14702ef1f0ffSBarry Smith    Level: intermediate
14712ef1f0ffSBarry Smith 
14721cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()`
1473d90ac83dSHong Zhang S*/
14749371c9d4SSatish Balay typedef enum {
14759371c9d4SSatish Balay   MAT_SHIFT_NONE,
14769371c9d4SSatish Balay   MAT_SHIFT_NONZERO,
14779371c9d4SSatish Balay   MAT_SHIFT_POSITIVE_DEFINITE,
14789371c9d4SSatish Balay   MAT_SHIFT_INBLOCKS
14799371c9d4SSatish Balay } MatFactorShiftType;
14806a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[];
14815e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[];
1482d90ac83dSHong Zhang 
1483d90ac83dSHong Zhang /*S
1484ec5066bdSBarry Smith     MatFactorError - indicates what type of error was generated in a matrix factorization
14859aa7eafdSHong Zhang 
14862ef1f0ffSBarry Smith     Values:
14872ef1f0ffSBarry Smith +   `MAT_FACTOR_NOERROR`           - there was no error during the factorization
14882ef1f0ffSBarry Smith .   `MAT_FACTOR_STRUCT_ZEROPIVOT`  - there was a missing entry in a diagonal location of the matrix
14892ef1f0ffSBarry Smith .   `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization
14902ef1f0ffSBarry Smith .   `MAT_FACTOR_OUTMEMORY`         - the factorization has run out of memory
14912ef1f0ffSBarry Smith -   `MAT_FACTOR_OTHER`             - some other error has occurred.
14929aa7eafdSHong Zhang 
14932ef1f0ffSBarry Smith     Level: intermediate
149400e125f8SBarry Smith 
14952ef1f0ffSBarry Smith     Note:
14962ef1f0ffSBarry Smith     When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason`
14972ef1f0ffSBarry Smith 
14981cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`,
14992ef1f0ffSBarry Smith           `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason`
15009aa7eafdSHong Zhang S*/
15019371c9d4SSatish Balay typedef enum {
15029371c9d4SSatish Balay   MAT_FACTOR_NOERROR,
15039371c9d4SSatish Balay   MAT_FACTOR_STRUCT_ZEROPIVOT,
15049371c9d4SSatish Balay   MAT_FACTOR_NUMERIC_ZEROPIVOT,
15059371c9d4SSatish Balay   MAT_FACTOR_OUTMEMORY,
15069371c9d4SSatish Balay   MAT_FACTOR_OTHER
15079371c9d4SSatish Balay } MatFactorError;
15089aa7eafdSHong Zhang 
150900e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *);
1510b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat);
15117b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *);
151200e125f8SBarry Smith 
15139aa7eafdSHong Zhang /*S
1514422a814eSBarry Smith    MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization
1515b00f7748SHong Zhang 
1516b00f7748SHong Zhang    Level: developer
1517b00f7748SHong Zhang 
15182ef1f0ffSBarry Smith    Note:
15192ef1f0ffSBarry Smith    You can use `MatFactorInfoInitialize()` to set default values.
1520b00f7748SHong Zhang 
15212ef1f0ffSBarry Smith    Fortran Note:
15222ef1f0ffSBarry Smith    The data is available in a double precision arrays of size `MAT_FACTORINFO_SIZE`
15232ef1f0ffSBarry Smith 
15241cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`,
15252ef1f0ffSBarry Smith           `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()`
1526b00f7748SHong Zhang S*/
1527b00f7748SHong Zhang typedef struct {
152815e8a5b3SHong Zhang   PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */
152985317021SBarry Smith   PetscReal usedt;
153015e8a5b3SHong Zhang   PetscReal dt;            /* drop tolerance */
1531b00f7748SHong Zhang   PetscReal dtcol;         /* tolerance for pivoting */
153215e8a5b3SHong Zhang   PetscReal dtcount;       /* maximum nonzeros to be allowed per row */
153367e28bfeSBarry Smith   PetscReal fill;          /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */
1534348344bbSBarry Smith   PetscReal levels;        /* ICC/ILU(levels) */
1535bcd9e38bSBarry Smith   PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0
1536bcd9e38bSBarry Smith                                    factorization may be faster if do not pivot */
153715e8a5b3SHong Zhang   PetscReal zeropivot;     /* pivot is called zero if less than this */
1538f4db908eSBarry Smith   PetscReal shifttype;     /* type of shift added to matrix factor to prevent zero pivots */
1539f4db908eSBarry Smith   PetscReal shiftamount;   /* how large the shift is */
154015e8a5b3SHong Zhang } MatFactorInfo;
1541ffa6d0a5SLois Curfman McInnes 
1542014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *);
15439a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *);
15449a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15459a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *);
15469a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *);
15479a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *);
15489a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15499a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15509a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15519a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *);
15529a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *);
15533f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *);
15543f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15553f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *);
1556014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *);
1557014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec);
1558014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec);
1559014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec);
1560014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec);
1561014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec);
1562014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec);
1563014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs);
15647c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat);
15657c2f51b8SStefano Zampini 
15669371c9d4SSatish Balay typedef enum {
15679371c9d4SSatish Balay   MAT_FACTOR_SCHUR_UNFACTORED,
15689371c9d4SSatish Balay   MAT_FACTOR_SCHUR_FACTORED,
15699371c9d4SSatish Balay   MAT_FACTOR_SCHUR_INVERTED
15709371c9d4SSatish Balay } MatFactorSchurStatus;
15718e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS);
15727c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15737c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus);
15745a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat);
15757c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15765a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec);
15775a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec);
15786dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat);
1579bb5a7306SBarry Smith 
15808a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat);
1581d91e6319SBarry Smith /*E
1582d91e6319SBarry Smith    MatSORType - What type of (S)SOR to perform
1583bb1eb677SSatish Balay 
15842ef1f0ffSBarry Smith    Values:
15852ef1f0ffSBarry Smith +  `SOR_FORWARD_SWEEP`         - do a sweep from the first row of the matrix to the last
15862ef1f0ffSBarry Smith .  `SOR_BACKWARD_SWEEP`        - do a sweep from the last row to the first
15872ef1f0ffSBarry Smith .  `SOR_SYMMETRIC_SWEEP`       - do a sweep from the first row to the last and then back to the first
1588af27ebaaSBarry Smith .  `SOR_LOCAL_FORWARD_SWEEP`   - each MPI process does its own forward sweep with no communication
1589af27ebaaSBarry Smith .  `SOR_LOCAL_BACKWARD_SWEEP`  - each MPI process does its own backward sweep with no communication
1590af27ebaaSBarry Smith .  `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI process does its own symmetric sweep with no communication
15912ef1f0ffSBarry Smith .  `SOR_ZERO_INITIAL_GUESS`    - indicates the initial solution is zero so the sweep can avoid unneeded computation
15922ef1f0ffSBarry Smith .  `SOR_EISENSTAT`             - apply the Eisentat application of SOR, see `PCEISENSTAT`
15932ef1f0ffSBarry Smith .  `SOR_APPLY_UPPER`           - multiply by the upper triangular portion of the matrix
15942ef1f0ffSBarry Smith -  `SOR_APPLY_LOWER`           - multiply by the lower triangular portion of the matrix
15952ef1f0ffSBarry Smith 
1596d91e6319SBarry Smith    Level: beginner
1597d91e6319SBarry Smith 
15982ef1f0ffSBarry Smith    Note:
15992ef1f0ffSBarry Smith    These may be bitwise ORd together
1600d9274352SBarry Smith 
16012ef1f0ffSBarry Smith    Developer Note:
16022ef1f0ffSBarry Smith    Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below
1603d91e6319SBarry Smith 
16041cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSOR()`
1605d91e6319SBarry Smith E*/
16069371c9d4SSatish Balay typedef enum {
16079371c9d4SSatish Balay   SOR_FORWARD_SWEEP         = 1,
16089371c9d4SSatish Balay   SOR_BACKWARD_SWEEP        = 2,
16099371c9d4SSatish Balay   SOR_SYMMETRIC_SWEEP       = 3,
16109371c9d4SSatish Balay   SOR_LOCAL_FORWARD_SWEEP   = 4,
16119371c9d4SSatish Balay   SOR_LOCAL_BACKWARD_SWEEP  = 8,
16129371c9d4SSatish Balay   SOR_LOCAL_SYMMETRIC_SWEEP = 12,
16139371c9d4SSatish Balay   SOR_ZERO_INITIAL_GUESS    = 16,
16149371c9d4SSatish Balay   SOR_EISENSTAT             = 32,
16159371c9d4SSatish Balay   SOR_APPLY_UPPER           = 64,
16169371c9d4SSatish Balay   SOR_APPLY_LOWER           = 128
16179371c9d4SSatish Balay } MatSORType;
1618014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
16198ed539a5SBarry Smith 
16207086a01eSPeter Brune /*S
16217086a01eSPeter Brune    MatColoring - Object for managing the coloring of matrices.
16227086a01eSPeter Brune 
16237086a01eSPeter Brune    Level: beginner
16247086a01eSPeter Brune 
1625ec5066bdSBarry Smith    Notes:
162687497f52SBarry Smith    Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
162787497f52SBarry Smith    matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors).
1628ec5066bdSBarry Smith 
162987497f52SBarry Smith    Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This
16302ef1f0ffSBarry Smith    same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices.
1631ec5066bdSBarry Smith 
16321cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`,
16332ef1f0ffSBarry Smith           `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`,
16342ef1f0ffSBarry Smith           `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen`
16357086a01eSPeter Brune S*/
1636d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring;
1637d4db15c4SBarry Smith 
1638d4db15c4SBarry Smith /*J
1639d4db15c4SBarry Smith    MatColoringType - String with the name of a PETSc matrix coloring
1640d9274352SBarry Smith 
1641d9274352SBarry Smith    Level: beginner
1642d9274352SBarry Smith 
16431cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring`
164476bdecfbSBarry Smith J*/
164519fd82e9SBarry Smith typedef const char *MatColoringType;
16465567d71aSPeter Brune #define MATCOLORINGJP      "jp"
1647b9acb617SPeter Brune #define MATCOLORINGPOWER   "power"
16482692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural"
16492692d6eeSBarry Smith #define MATCOLORINGSL      "sl"
16502692d6eeSBarry Smith #define MATCOLORINGLF      "lf"
16512692d6eeSBarry Smith #define MATCOLORINGID      "id"
16528121bdceSPeter Brune #define MATCOLORINGGREEDY  "greedy"
1653b12f92e5SBarry Smith 
16548ac6da0aSPeter Brune /*E
16552ef1f0ffSBarry Smith    MatColoringWeightType - Type of weight scheme used for the coloring algorithm
16568ac6da0aSPeter Brune 
16572ef1f0ffSBarry Smith    Values:
165887497f52SBarry Smith +  `MAT_COLORING_RANDOM`  - Random weights
165987497f52SBarry Smith .  `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering.
166087497f52SBarry Smith -  `MAT_COLORING_LF`      - Last-first weighting.
16618ac6da0aSPeter Brune 
16628ac6da0aSPeter Brune     Level: intermediate
16638ac6da0aSPeter Brune 
16641cc06b55SBarry Smith .seealso: [](ch_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()`
16658ac6da0aSPeter Brune E*/
16669371c9d4SSatish Balay typedef enum {
16679371c9d4SSatish Balay   MAT_COLORING_WEIGHT_RANDOM,
16689371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LEXICAL,
16699371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LF,
16709371c9d4SSatish Balay   MAT_COLORING_WEIGHT_SL
16719371c9d4SSatish Balay } MatColoringWeightType;
16728ac6da0aSPeter Brune 
1673335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *);
1674d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *);
1675335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *);
1676335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer);
1677335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType);
1678335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring);
1679335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt);
1680335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *);
1681335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt);
1682335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *);
1683335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *);
1684335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring));
1685014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *);
16868ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType);
1687c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *);
16888ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm);
1689bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring);
1690edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatColoringTest()", ) static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring)
1691d71ae5a4SJacob Faibussowitsch {
16929371c9d4SSatish Balay   return MatColoringTest(matcoloring, iscoloring);
16939371c9d4SSatish Balay }
1694bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring);
1695639f9d9dSBarry Smith 
1696d9274352SBarry Smith /*S
169787497f52SBarry Smith    MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring
1698639f9d9dSBarry Smith 
1699d9274352SBarry Smith    Level: beginner
1700d9274352SBarry Smith 
1701ec5066bdSBarry Smith    Notes:
170287497f52SBarry Smith    This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()`
1703ec5066bdSBarry Smith 
17042ef1f0ffSBarry Smith    The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object
17052ef1f0ffSBarry Smith 
17061cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()`
1707d9274352SBarry Smith S*/
1708e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring;
1709639f9d9dSBarry Smith 
1710014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *);
1711014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *);
1712014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer);
1713014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *);
1714014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **);
1715014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal);
1716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring);
1717d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *);
1718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec);
1719edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]);
1720f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring);
1721f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt);
1722bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *);
1723b1683b59SHong Zhang 
1724b1683b59SHong Zhang /*S
1725af27ebaaSBarry Smith    MatTransposeColoring - Object for computing a sparse matrix product $C = A*B^T$ via coloring
1726b1683b59SHong Zhang 
17272ef1f0ffSBarry Smith    Level: developer
1728b1683b59SHong Zhang 
17291cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()`
1730b1683b59SHong Zhang S*/
1731b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring;
1732b1683b59SHong Zhang 
1733014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *);
1734014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat);
1735014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat);
1736014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *);
1737b1683b59SHong Zhang 
1738d9274352SBarry Smith /*S
1739d9274352SBarry Smith    MatPartitioning - Object for managing the partitioning of a matrix or graph
1740d9274352SBarry Smith 
1741d9274352SBarry Smith    Level: beginner
1742d9274352SBarry Smith 
174387497f52SBarry Smith    Note:
174487497f52SBarry Smith    There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations
174587497f52SBarry Smith    via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`)
1746ec5066bdSBarry Smith 
1747b5e6e808SPierre Jolivet    Developer Note:
17482ef1f0ffSBarry Smith    It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed
1749ec5066bdSBarry Smith 
17501cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`,
17512ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
1752d9274352SBarry Smith S*/
175391e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning;
1754d9274352SBarry Smith 
175576bdecfbSBarry Smith /*J
17568f6c3df8SBarry Smith     MatPartitioningType - String with the name of a PETSc matrix partitioning
1757d9274352SBarry Smith 
1758d9274352SBarry Smith    Level: beginner
17590d04baf8SBarry Smith dm
17601cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`,
17612ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
176276bdecfbSBarry Smith J*/
176319fd82e9SBarry Smith typedef const char *MatPartitioningType;
17642692d6eeSBarry Smith #define MATPARTITIONINGCURRENT  "current"
1765aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE  "average"
17662692d6eeSBarry Smith #define MATPARTITIONINGSQUARE   "square"
17672692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis"
17682692d6eeSBarry Smith #define MATPARTITIONINGCHACO    "chaco"
17692692d6eeSBarry Smith #define MATPARTITIONINGPARTY    "party"
177050d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch"
177188d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch"
177271306c60Sjroman 
1773014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *);
177419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType);
1775014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt);
1776014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat);
1777252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt);
1778014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]);
1779014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]);
1780ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool);
1781ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *);
1782014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *);
1783fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *);
1784668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS);
1785f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *);
1786014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *);
1787bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning));
1788014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer);
1789fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]);
1790014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning);
179119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *);
1792ca161407SBarry Smith 
179327538973SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part);
1794014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning);
1795014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *);
17960752156aSBarry Smith 
17979371c9d4SSatish Balay typedef enum {
17989371c9d4SSatish Balay   MP_CHACO_MULTILEVEL = 1,
17999371c9d4SSatish Balay   MP_CHACO_SPECTRAL   = 2,
18009371c9d4SSatish Balay   MP_CHACO_LINEAR     = 4,
18019371c9d4SSatish Balay   MP_CHACO_RANDOM     = 5,
18029371c9d4SSatish Balay   MP_CHACO_SCATTERED  = 6
18039371c9d4SSatish Balay } MPChacoGlobalType;
18046a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[];
18059371c9d4SSatish Balay typedef enum {
18069371c9d4SSatish Balay   MP_CHACO_KERNIGHAN = 1,
18079371c9d4SSatish Balay   MP_CHACO_NONE      = 2
18089371c9d4SSatish Balay } MPChacoLocalType;
18096a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[];
18109371c9d4SSatish Balay typedef enum {
18119371c9d4SSatish Balay   MP_CHACO_LANCZOS = 0,
18129371c9d4SSatish Balay   MP_CHACO_RQI     = 1
18139371c9d4SSatish Balay } MPChacoEigenType;
18146a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[];
1815b6956c12SJose Roman 
1816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType);
1817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *);
1818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType);
1819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *);
1820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal);
1821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType);
1822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *);
1823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal);
1824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *);
1825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt);
1826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *);
182771306c60Sjroman 
182871306c60Sjroman #define MP_PARTY_OPT "opt"
182971306c60Sjroman #define MP_PARTY_LIN "lin"
183071306c60Sjroman #define MP_PARTY_SCA "sca"
183171306c60Sjroman #define MP_PARTY_RAN "ran"
183271306c60Sjroman #define MP_PARTY_GBF "gbf"
183371306c60Sjroman #define MP_PARTY_GCF "gcf"
183471306c60Sjroman #define MP_PARTY_BUB "bub"
183571306c60Sjroman #define MP_PARTY_DEF "def"
1836014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *);
183771306c60Sjroman #define MP_PARTY_HELPFUL_SETS  "hs"
183871306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl"
183971306c60Sjroman #define MP_PARTY_NONE          "no"
1840014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *);
1841014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal);
1842014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool);
1843014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool);
184471306c60Sjroman 
18459371c9d4SSatish Balay typedef enum {
18469371c9d4SSatish Balay   MP_PTSCOTCH_DEFAULT,
18479371c9d4SSatish Balay   MP_PTSCOTCH_QUALITY,
18489371c9d4SSatish Balay   MP_PTSCOTCH_SPEED,
18499371c9d4SSatish Balay   MP_PTSCOTCH_BALANCE,
18509371c9d4SSatish Balay   MP_PTSCOTCH_SAFETY,
18519371c9d4SSatish Balay   MP_PTSCOTCH_SCALABILITY
18529371c9d4SSatish Balay } MPPTScotchStrategyType;
18536a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[];
1854e0f1cffaSJose Roman 
1855014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal);
1856014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *);
1857014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType);
1858014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *);
185971306c60Sjroman 
1860b43b03e9SMark F. Adams /*
18616294fa2bSFande Kong  * hierarchical partitioning
18626294fa2bSFande Kong  */
18634e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *);
18644e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *);
18654e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt);
18664e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt);
18676294fa2bSFande Kong 
1868014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *);
1869591294e4SBarry Smith 
18700752156aSBarry Smith /*
1871c786d857SStefano Zampini     If you add entries here you must also add them to src/mat/f90-mod/petscmat.h
1872c786d857SStefano Zampini     If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx
1873d4fbbf0eSBarry Smith */
18749371c9d4SSatish Balay typedef enum {
18759371c9d4SSatish Balay   MATOP_SET_VALUES               = 0,
18761c1c02c0SLois Curfman McInnes   MATOP_GET_ROW                  = 1,
18771c1c02c0SLois Curfman McInnes   MATOP_RESTORE_ROW              = 2,
18781c1c02c0SLois Curfman McInnes   MATOP_MULT                     = 3,
18791c1c02c0SLois Curfman McInnes   MATOP_MULT_ADD                 = 4,
18807c922b88SBarry Smith   MATOP_MULT_TRANSPOSE           = 5,
18817c922b88SBarry Smith   MATOP_MULT_TRANSPOSE_ADD       = 6,
18821c1c02c0SLois Curfman McInnes   MATOP_SOLVE                    = 7,
18831c1c02c0SLois Curfman McInnes   MATOP_SOLVE_ADD                = 8,
18847c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE          = 9,
18857c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE_ADD      = 10,
18861c1c02c0SLois Curfman McInnes   MATOP_LUFACTOR                 = 11,
18871c1c02c0SLois Curfman McInnes   MATOP_CHOLESKYFACTOR           = 12,
1888a714c06dSBarry Smith   MATOP_SOR                      = 13,
18891c1c02c0SLois Curfman McInnes   MATOP_TRANSPOSE                = 14,
18901c1c02c0SLois Curfman McInnes   MATOP_GETINFO                  = 15,
18911c1c02c0SLois Curfman McInnes   MATOP_EQUAL                    = 16,
18921c1c02c0SLois Curfman McInnes   MATOP_GET_DIAGONAL             = 17,
18931c1c02c0SLois Curfman McInnes   MATOP_DIAGONAL_SCALE           = 18,
18941c1c02c0SLois Curfman McInnes   MATOP_NORM                     = 19,
18951c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_BEGIN           = 20,
18961c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_END             = 21,
1897d519adbfSMatthew Knepley   MATOP_SET_OPTION               = 22,
1898d519adbfSMatthew Knepley   MATOP_ZERO_ENTRIES             = 23,
1899d519adbfSMatthew Knepley   MATOP_ZERO_ROWS                = 24,
1900d519adbfSMatthew Knepley   MATOP_LUFACTOR_SYMBOLIC        = 25,
1901d519adbfSMatthew Knepley   MATOP_LUFACTOR_NUMERIC         = 26,
1902d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27,
1903d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_NUMERIC  = 28,
1904e5f2d425SStefano Zampini   MATOP_SETUP                    = 29,
1905d519adbfSMatthew Knepley   MATOP_ILUFACTOR_SYMBOLIC       = 30,
1906d519adbfSMatthew Knepley   MATOP_ICCFACTOR_SYMBOLIC       = 31,
1907a5b7ff6bSBarry Smith   MATOP_GET_DIAGONAL_BLOCK       = 32,
1908e5f2d425SStefano Zampini   MATOP_SET_INF                  = 33,
1909d519adbfSMatthew Knepley   MATOP_DUPLICATE                = 34,
1910d519adbfSMatthew Knepley   MATOP_FORWARD_SOLVE            = 35,
1911d519adbfSMatthew Knepley   MATOP_BACKWARD_SOLVE           = 36,
1912d519adbfSMatthew Knepley   MATOP_ILUFACTOR                = 37,
1913d519adbfSMatthew Knepley   MATOP_ICCFACTOR                = 38,
1914d519adbfSMatthew Knepley   MATOP_AXPY                     = 39,
19157dae84e0SHong Zhang   MATOP_CREATE_SUBMATRICES       = 40,
1916d519adbfSMatthew Knepley   MATOP_INCREASE_OVERLAP         = 41,
1917d519adbfSMatthew Knepley   MATOP_GET_VALUES               = 42,
1918d519adbfSMatthew Knepley   MATOP_COPY                     = 43,
1919d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX              = 44,
1920d519adbfSMatthew Knepley   MATOP_SCALE                    = 45,
1921d519adbfSMatthew Knepley   MATOP_SHIFT                    = 46,
192235153367SBarry Smith   MATOP_DIAGONAL_SET             = 47,
19239d39f69dSJed Brown   MATOP_ZERO_ROWS_COLUMNS        = 48,
19249d39f69dSJed Brown   MATOP_SET_RANDOM               = 49,
1925d519adbfSMatthew Knepley   MATOP_GET_ROW_IJ               = 50,
1926d519adbfSMatthew Knepley   MATOP_RESTORE_ROW_IJ           = 51,
1927d519adbfSMatthew Knepley   MATOP_GET_COLUMN_IJ            = 52,
1928d519adbfSMatthew Knepley   MATOP_RESTORE_COLUMN_IJ        = 53,
1929d519adbfSMatthew Knepley   MATOP_FDCOLORING_CREATE        = 54,
1930d519adbfSMatthew Knepley   MATOP_COLORING_PATCH           = 55,
1931d519adbfSMatthew Knepley   MATOP_SET_UNFACTORED           = 56,
1932d519adbfSMatthew Knepley   MATOP_PERMUTE                  = 57,
1933d519adbfSMatthew Knepley   MATOP_SET_VALUES_BLOCKED       = 58,
19347dae84e0SHong Zhang   MATOP_CREATE_SUBMATRIX         = 59,
1935d519adbfSMatthew Knepley   MATOP_DESTROY                  = 60,
1936d519adbfSMatthew Knepley   MATOP_VIEW                     = 61,
1937d519adbfSMatthew Knepley   MATOP_CONVERT_FROM             = 62,
1938e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_63=63 */
19397bab7c10SHong Zhang   MATOP_MATMAT_MULT_SYMBOLIC    = 64,
19407bab7c10SHong Zhang   MATOP_MATMAT_MULT_NUMERIC     = 65,
1941d519adbfSMatthew Knepley   MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66,
1942d519adbfSMatthew Knepley   MATOP_SET_VALUES_LOCAL        = 67,
1943d519adbfSMatthew Knepley   MATOP_ZERO_ROWS_LOCAL         = 68,
1944d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX_ABS         = 69,
1945d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN_ABS         = 70,
1946d519adbfSMatthew Knepley   MATOP_CONVERT                 = 71,
1947e5f2d425SStefano Zampini   MATOP_HAS_OPERATION           = 72,
19489d39f69dSJed Brown   /* MATOP_PLACEHOLDER_73=73, */
1949d519adbfSMatthew Knepley   MATOP_SET_VALUES_ADIFOR = 74,
1950d519adbfSMatthew Knepley   MATOP_FD_COLORING_APPLY = 75,
1951d519adbfSMatthew Knepley   MATOP_SET_FROM_OPTIONS  = 76,
1952e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_77=77, */
1953e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_78=78, */
19549d39f69dSJed Brown   MATOP_FIND_ZERO_DIAGONALS       = 79,
1955d519adbfSMatthew Knepley   MATOP_MULT_MULTIPLE             = 80,
1956d519adbfSMatthew Knepley   MATOP_SOLVE_MULTIPLE            = 81,
1957d519adbfSMatthew Knepley   MATOP_GET_INERTIA               = 82,
1958d519adbfSMatthew Knepley   MATOP_LOAD                      = 83,
1959d519adbfSMatthew Knepley   MATOP_IS_SYMMETRIC              = 84,
1960d519adbfSMatthew Knepley   MATOP_IS_HERMITIAN              = 85,
1961d519adbfSMatthew Knepley   MATOP_IS_STRUCTURALLY_SYMMETRIC = 86,
1962820469bcSHong Zhang   MATOP_SET_VALUES_BLOCKEDLOCAL   = 87,
1963b41ce5d5SBarry Smith   MATOP_CREATE_VECS               = 88,
1964e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_89=89, */
1965d519adbfSMatthew Knepley   MATOP_MAT_MULT_SYMBOLIC = 90,
1966d519adbfSMatthew Knepley   MATOP_MAT_MULT_NUMERIC  = 91,
1967e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_92=92, */
1968d519adbfSMatthew Knepley   MATOP_PTAP_SYMBOLIC = 93,
1969d519adbfSMatthew Knepley   MATOP_PTAP_NUMERIC  = 94,
1970e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_95=95, */
1971bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96,
1972bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_NUMER = 97,
1973e5f2d425SStefano Zampini   MATOP_BIND_TO_CPU              = 98,
19747a3c3d58SStefano Zampini   MATOP_PRODUCTSETFROMOPTIONS    = 99,
19757a3c3d58SStefano Zampini   MATOP_PRODUCTSYMBOLIC          = 100,
19767a3c3d58SStefano Zampini   MATOP_PRODUCTNUMERIC           = 101,
1977d519adbfSMatthew Knepley   MATOP_CONJUGATE                = 102,
1978e5f2d425SStefano Zampini   MATOP_VIEW_NATIVE              = 103,
1979d519adbfSMatthew Knepley   MATOP_SET_VALUES_ROW           = 104,
1980d519adbfSMatthew Knepley   MATOP_REAL_PART                = 105,
1981bda6c4cbSBarry Smith   MATOP_IMAGINARY_PART           = 106,
1982bda6c4cbSBarry Smith   MATOP_GET_ROW_UPPER_TRIANGULAR = 107,
1983bda6c4cbSBarry Smith   MATOP_RESTORE_ROW_UPPER_TRIANG = 108,
1984bda6c4cbSBarry Smith   MATOP_MAT_SOLVE                = 109,
198529eadf9eSStefano Zampini   MATOP_MAT_SOLVE_TRANSPOSE      = 110,
1986d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN              = 111,
19870e8d04f7SBarry Smith   MATOP_GET_COLUMN_VECTOR        = 112,
1988d519adbfSMatthew Knepley   MATOP_MISSING_DIAGONAL         = 113,
19890e8d04f7SBarry Smith   MATOP_GET_SEQ_NONZERO_STRUCTUR = 114,
199089c6957cSBarry Smith   MATOP_CREATE                   = 115,
199189c6957cSBarry Smith   MATOP_GET_GHOSTS               = 116,
19920e8d04f7SBarry Smith   MATOP_GET_LOCAL_SUB_MATRIX     = 117,
19930e8d04f7SBarry Smith   MATOP_RESTORE_LOCALSUB_MATRIX  = 118,
1994eeffb40dSHong Zhang   MATOP_MULT_DIAGONAL_BLOCK      = 119,
19950e8d04f7SBarry Smith   MATOP_HERMITIAN_TRANSPOSE      = 120,
19960e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANSPOSE = 121,
19970e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANS_ADD = 122,
19980e8d04f7SBarry Smith   MATOP_GET_MULTI_PROC_BLOCK     = 123,
19999d39f69dSJed Brown   MATOP_FIND_NONZERO_ROWS        = 124,
20000e8d04f7SBarry Smith   MATOP_GET_COLUMN_NORMS         = 125,
20019d39f69dSJed Brown   MATOP_INVERT_BLOCK_DIAGONAL    = 126,
2002e5f2d425SStefano Zampini   MATOP_INVERT_VBLOCK_DIAGONAL   = 127,
2003b41ce5d5SBarry Smith   MATOP_CREATE_SUB_MATRICES_MPI  = 128,
20042b8ad9a3SHong Zhang   MATOP_SET_VALUES_BATCH         = 129,
2005e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_130=130, */
20060e8d04f7SBarry Smith   MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131,
2007e9b602ebSSatish Balay   MATOP_TRANSPOSE_MAT_MULT_NUMER = 132,
20080e8d04f7SBarry Smith   MATOP_TRANSPOSE_COLORING_CREAT = 133,
20090e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_SPT = 134,
20100e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_DEN = 135,
2011e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_136=136, */
20120e8d04f7SBarry Smith   MATOP_RART_SYMBOLIC         = 137,
20130e8d04f7SBarry Smith   MATOP_RART_NUMERIC          = 138,
2014e09a3074SHong Zhang   MATOP_SET_BLOCK_SIZES       = 139,
2015f9426fe0SMark Adams   MATOP_AYPX                  = 140,
20161919a2e2SJed Brown   MATOP_RESIDUAL              = 141,
20179c8f2541SHong Zhang   MATOP_FDCOLORING_SETUP      = 142,
2018e5f2d425SStefano Zampini   MATOP_FIND_OFFBLOCK_ENTRIES = 143,
20192d033e1fSHong Zhang   MATOP_MPICONCATENATESEQ     = 144,
2020bb01b7b0SPatrick Sanan   MATOP_DESTROYSUBMATRICES    = 145,
2021e265f6d6SPatrick Sanan   MATOP_TRANSPOSE_SOLVE       = 146,
2022e265f6d6SPatrick Sanan   MATOP_GET_VALUES_LOCAL      = 147
2023fae171e0SBarry Smith } MatOperation;
20240c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void));
2025976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void));
2026976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *);
202794342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *);
2028edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatProductClear()", ) static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A)
2029d71ae5a4SJacob Faibussowitsch {
20309371c9d4SSatish Balay   return MatProductClear(A);
20319371c9d4SSatish Balay }
2032014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void));
2033014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void));
2034014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *);
2035800f99ffSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *));
2036db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType);
2037f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
2038f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
20390c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat);
2040b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType);
2041b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *);
2042112a2221SBarry Smith 
204390ace30eSBarry Smith /*
204490ace30eSBarry Smith    Codes for matrices stored on disk. By default they are
204590ace30eSBarry Smith    stored in a universal format. By changing the format with
20466a9046bcSBarry Smith    PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will
204790ace30eSBarry Smith    be stored in a way natural for the matrix, for example dense matrices
204890ace30eSBarry Smith    would be stored as dense. Matrices stored this way may only be
2049f4403165SShri Abhyankar    read into matrices of the same type.
205090ace30eSBarry Smith */
205190ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1
205290ace30eSBarry Smith 
2053014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal);
205475d48cdbSStefano Zampini 
20558546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType);
205675d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
20574f58015eSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetAllowRepeated(Mat, PetscBool);
20584f58015eSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetAllowRepeated(Mat, PetscBool *);
205975d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool);
2060f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool);
2061014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *);
20623b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *);
2063014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat);
2064e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
20651f4e1ec7SBarry Smith 
2066d9274352SBarry Smith /*S
2067d9274352SBarry Smith    MatNullSpace - Object that removes a null space from a vector, i.e.
2068cb6b9846SMatthew Knepley                   orthogonalizes the vector to a subspace
2069d9274352SBarry Smith 
2070f7a9e4ceSBarry Smith    Level: advanced
2071d9274352SBarry Smith 
20721cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()`
2073d9274352SBarry Smith S*/
207474637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace;
2075d9274352SBarry Smith 
2076014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *);
2077014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *);
2078014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *);
2079d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec);
2080014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *);
20815fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *);
20825fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace);
2083014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace);
2084014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace);
2085014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *);
20864849c82aSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNullSpaces(PetscInt, Mat[], MatNullSpace *[]);
20874849c82aSBarry Smith PETSC_EXTERN PetscErrorCode MatRestoreNullSpaces(PetscInt, Mat[], MatNullSpace *[]);
2088014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *);
2089014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer);
2090014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **);
2091014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *);
209274637425SBarry Smith 
2093014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS);
2094014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal);
2095014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *);
20963f1d51d7SBarry Smith 
2097014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *);
2098014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *);
2099014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *);
2100c4f061fbSSatish Balay 
21010bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *);
21020bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *);
21030bacdadaSStefano Zampini 
2104edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperator()", ) static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B)
2105d71ae5a4SJacob Faibussowitsch {
2106f22e26b7SPierre Jolivet   return MatComputeOperator(A, PETSC_NULLPTR, B);
21079371c9d4SSatish Balay }
2108edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperatorTranspose()", ) static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B)
2109d71ae5a4SJacob Faibussowitsch {
2110f22e26b7SPierre Jolivet   return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B);
21119371c9d4SSatish Balay }
2112b0a32e0cSBarry Smith 
211349bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *);
211449bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *);
2115a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **);
2116a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2117a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **);
2118a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **);
2119a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **);
2120a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2121a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **);
2122a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **);
2123dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat);
2124dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]);
2125dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]);
2126910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *);
212749bd79ccSDebojyoti Ghosh 
2128014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec);
212904f1ad80SBarry Smith 
21304bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDInitializePackage(void);
21314bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDFinalizePackage(void);
21324bf303faSJacob Faibussowitsch 
2133014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2134014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec);
2135014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *);
2136014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *));
2137014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec));
2138014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt);
2139014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat);
2140014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal);
2141014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt);
2142014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *);
2143014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]);
2144014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *);
2145014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *);
2146e884886fSBarry Smith 
21476370053bSBarry Smith /*S
21486370053bSBarry Smith     MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free
21496370053bSBarry Smith               Jacobian vector products
2150e884886fSBarry Smith 
21512ef1f0ffSBarry Smith     Level: developer
21522ef1f0ffSBarry Smith 
215395452b02SPatrick Sanan     Notes:
215487497f52SBarry Smith     `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure
21556370053bSBarry Smith 
21562ef1f0ffSBarry Smith      MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure
21576370053bSBarry Smith 
21582ef1f0ffSBarry Smith     This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator`
21596370053bSBarry Smith 
21601cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`,
21612ef1f0ffSBarry Smith           `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator`
21626370053bSBarry Smith S*/
2163e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD;
2164e884886fSBarry Smith 
216576bdecfbSBarry Smith /*J
21662ef1f0ffSBarry Smith    MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function
2167e884886fSBarry Smith 
216816a05f60SBarry Smith    Values:
2169af27ebaaSBarry Smith +   `MATMFFD_DS` - an algorithm described by Dennis and Schnabel {cite}`dennis:83`
2170af27ebaaSBarry Smith -   `MATMFFD_WP` - the Walker-Pernice {cite}`pw98` strategy.
217116a05f60SBarry Smith 
2172e884886fSBarry Smith    Level: beginner
2173e884886fSBarry Smith 
21741cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()`
217576bdecfbSBarry Smith J*/
217619fd82e9SBarry Smith typedef const char *MatMFFDType;
2177e884886fSBarry Smith #define MATMFFD_DS "ds"
2178e884886fSBarry Smith #define MATMFFD_WP "wp"
2179e884886fSBarry Smith 
218019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType);
2181bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD));
2182e884886fSBarry Smith 
2183014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal);
2184014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool);
2185e884886fSBarry Smith 
218661ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType);
218761ab5df0SBarry Smith 
2188014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *);
2189014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *);
21907dbadf16SMatthew Knepley 
219153022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS
21928434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscScalar(MatH2OpusKernelFn)(PetscInt, PetscReal[], PetscReal[], void *);
21938434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatH2OpusKernelFn *MatH2OpusKernel;
21948434afd1SBarry Smith PETSC_EXTERN PetscErrorCode                     MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernelFn *, void *, PetscReal, PetscInt, PetscInt, Mat *);
219553022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *);
219653022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal);
219753022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusOrthogonalize(Mat);
219853022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusCompress(Mat, PetscReal);
219953022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusSetNativeMult(Mat, PetscBool);
220053022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusGetNativeMult(Mat, PetscBool *);
220153022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusGetIndexMap(Mat, IS *);
220253022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *);
2203300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar);
2204a0d2e7d8SStefano Zampini #endif
2205a0d2e7d8SStefano Zampini 
2206c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL
22078434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode(MatHtoolKernelFn)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *);
22088434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatHtoolKernelFn *MatHtoolKernel;
22098434afd1SBarry Smith PETSC_EXTERN PetscErrorCode                    MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernelFn *, void *, Mat *);
22108434afd1SBarry Smith PETSC_EXTERN PetscErrorCode                    MatHtoolSetKernel(Mat, MatHtoolKernelFn *, void *);
221198e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode                    MatHtoolGetPermutationSource(Mat, IS *);
221298e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode                    MatHtoolGetPermutationTarget(Mat, IS *);
221398e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode                    MatHtoolUsePermutation(Mat, PetscBool);
22142ef1f0ffSBarry Smith 
2215c7a4214aSPierre Jolivet /*E
221687497f52SBarry Smith    MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL`
2217c7a4214aSPierre Jolivet 
2218c7a4214aSPierre Jolivet    Values:
221987497f52SBarry Smith +  `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation
222087497f52SBarry Smith .  `MAT_HTOOL_COMPRESSOR_FULL_ACA`                 - full adaptive cross approximation
222187497f52SBarry Smith -  `MAT_HTOOL_COMPRESSOR_SVD`                      - singular value decomposition
2222c7a4214aSPierre Jolivet 
222316a05f60SBarry Smith    Level: intermediate
222416a05f60SBarry Smith 
22251cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType`
2226c7a4214aSPierre Jolivet E*/
22279371c9d4SSatish Balay typedef enum {
22289371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA,
22299371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_FULL_ACA,
22309371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SVD
22319371c9d4SSatish Balay } MatHtoolCompressorType;
22322ef1f0ffSBarry Smith 
223398e73e17SPierre Jolivet /*E
223487497f52SBarry Smith    MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL`
223598e73e17SPierre Jolivet 
223698e73e17SPierre Jolivet    Values:
223787497f52SBarry Smith +  `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default)    - axis computed via principle component analysis, split uniformly
223887497f52SBarry Smith .  `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC`            - axis computed via principle component analysis, split barycentrically
223987497f52SBarry Smith .  `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR`   - axis along the largest extent of the bounding box, split uniformly
224087497f52SBarry Smith -  `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically
224198e73e17SPierre Jolivet 
224216a05f60SBarry Smith    Level: intermediate
224316a05f60SBarry Smith 
22442ef1f0ffSBarry Smith    Note:
22452ef1f0ffSBarry Smith    Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types
224698e73e17SPierre Jolivet 
22471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType`
224898e73e17SPierre Jolivet E*/
22499371c9d4SSatish Balay typedef enum {
22509371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_REGULAR,
22519371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC,
22529371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR,
22539371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC
22549371c9d4SSatish Balay } MatHtoolClusteringType;
2255c7a4214aSPierre Jolivet #endif
2256c7a4214aSPierre Jolivet 
225797969023SHong Zhang #ifdef PETSC_HAVE_MUMPS
2258014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt);
2259bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *);
2260b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal);
2261bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *);
2262bc6112feSHong Zhang 
2263ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *);
2264ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *);
2265ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *);
2266ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *);
22675c0bae8cSAshish Patel PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **);
226889a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat);
22690e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat);
227097969023SHong Zhang #endif
227123a5497aSJed Brown 
2272b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO
2273d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt);
2274b500a6b7SJose David Bermeol #endif
2275b500a6b7SJose David Bermeol 
2276d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO
2277d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt);
2278d305a81bSVasiliy Kozyrev #endif
2279d305a81bSVasiliy Kozyrev 
2280d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU
2281014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal);
2282d954db57SHong Zhang #endif
2283d954db57SHong Zhang 
2284fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST
2285fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *);
2286fb785984SHong Zhang #endif
2287fb785984SHong Zhang 
2288575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK
2289542aee0fSPieter Ghysels /*E
229029e0a805SPieter Ghysels     MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK`
2291542aee0fSPieter Ghysels 
22922ef1f0ffSBarry Smith     Values:
22932ef1f0ffSBarry Smith +  `MAT_STRUMPACK_NATURAL`   - use the current ordering
22942ef1f0ffSBarry Smith .  `MAT_STRUMPACK_METIS`     - use MeTis to compute an ordering
22952ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PARMETIS`  - use ParMeTis to compute an ordering
22962ef1f0ffSBarry Smith .  `MAT_STRUMPACK_SCOTCH`    - use Scotch to compute an ordering
22972ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PTSCOTCH`  - use parallel Scotch to compute an ordering
229829e0a805SPieter Ghysels .  `MAT_STRUMPACK_RCM`       - use an RCM ordering
229929e0a805SPieter Ghysels .  `MAT_STRUMPACK_GEOMETRIC` - use a geometric ordering (needs mesh info from user)
230029e0a805SPieter Ghysels .  `MAT_STRUMPACK_AMD`       - approximate minimum degree
230129e0a805SPieter Ghysels .  `MAT_STRUMPACK_MMD`       - multiple minimum degree
230229e0a805SPieter Ghysels .  `MAT_STRUMPACK_AND`       - approximate nested dissection
230329e0a805SPieter Ghysels .  `MAT_STRUMPACK_MLF`       - minimum local fill
230429e0a805SPieter Ghysels -  `MAT_STRUMPACK_SPECTRAL`  - spectral nested dissection
23052ef1f0ffSBarry Smith 
230616a05f60SBarry Smith     Level: intermediate
230716a05f60SBarry Smith 
23082ef1f0ffSBarry Smith     Developer Note:
23092ef1f0ffSBarry Smith     Should be called `MatSTRUMPACKReorderingType`
23102ef1f0ffSBarry Smith 
231129e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetReordering()`
2312542aee0fSPieter Ghysels E*/
23139371c9d4SSatish Balay typedef enum {
231429e0a805SPieter Ghysels   MAT_STRUMPACK_NATURAL,
231529e0a805SPieter Ghysels   MAT_STRUMPACK_METIS,
231629e0a805SPieter Ghysels   MAT_STRUMPACK_PARMETIS,
231729e0a805SPieter Ghysels   MAT_STRUMPACK_SCOTCH,
231829e0a805SPieter Ghysels   MAT_STRUMPACK_PTSCOTCH,
231929e0a805SPieter Ghysels   MAT_STRUMPACK_RCM,
232029e0a805SPieter Ghysels   MAT_STRUMPACK_GEOMETRIC,
232129e0a805SPieter Ghysels   MAT_STRUMPACK_AMD,
232229e0a805SPieter Ghysels   MAT_STRUMPACK_MMD,
232329e0a805SPieter Ghysels   MAT_STRUMPACK_AND,
232429e0a805SPieter Ghysels   MAT_STRUMPACK_MLF,
232529e0a805SPieter Ghysels   MAT_STRUMPACK_SPECTRAL
23269371c9d4SSatish Balay } MatSTRUMPACKReordering;
23272ef1f0ffSBarry Smith 
232834f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering);
232929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetReordering(Mat, MatSTRUMPACKReordering *);
233029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricNxyz(Mat, PetscInt, PetscInt, PetscInt);
233129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricComponents(Mat, PetscInt);
233229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricWidth(Mat, PetscInt);
2333575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool);
233429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetColPerm(Mat, PetscBool *);
233529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGPU(Mat, PetscBool);
233629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetGPU(Mat, PetscBool *);
233729e0a805SPieter Ghysels 
233829e0a805SPieter Ghysels /*E
233929e0a805SPieter Ghysels     MatSTRUMPACKCompressionType - Compression used in the approximate sparse factorization solver `MATSOLVERSTRUMPACK`
234029e0a805SPieter Ghysels 
234129e0a805SPieter Ghysels     Values:
234229e0a805SPieter Ghysels +  `MAT_STRUMPACK_COMPRESSION_TYPE_NONE`          - no compression, direct solver
234329e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_HSS`           - hierarchically semi-separable
234429e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_BLR`           - block low rank
234529e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_HODLR`         - hierarchically off-diagonal low rank (requires ButterfyPACK support, configure with --download-butterflypack)
234629e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR`     - hybrid of BLR and HODLR (requires ButterfyPACK support, configure with --download-butterflypack)
234729e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR` - hybrid of lossy (ZFP), BLR and HODLR (requires ButterfyPACK and ZFP support, configure with --download-butterflypack --download-zfp)
234829e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS`      - lossless compression (requires ZFP support, configure with --download-zfp)
234929e0a805SPieter Ghysels -  `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY`         - lossy compression (requires ZFP support, configure with --download-zfp)
235029e0a805SPieter Ghysels 
235129e0a805SPieter Ghysels     Level: intermediate
235229e0a805SPieter Ghysels 
235329e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetCompression()`
235429e0a805SPieter Ghysels E*/
235529e0a805SPieter Ghysels typedef enum {
235629e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_NONE,
235729e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_HSS,
235829e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_BLR,
235929e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_HODLR,
236029e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR,
236129e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR,
236229e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS,
236329e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY
236429e0a805SPieter Ghysels } MatSTRUMPACKCompressionType;
236529e0a805SPieter Ghysels 
236629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompression(Mat, MatSTRUMPACKCompressionType);
236729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompression(Mat, MatSTRUMPACKCompressionType *);
236829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompRelTol(Mat, PetscReal);
236929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompRelTol(Mat, PetscReal *);
237029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompAbsTol(Mat, PetscReal);
237129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompAbsTol(Mat, PetscReal *);
237229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompMinSepSize(Mat, PetscInt);
237329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompMinSepSize(Mat, PetscInt *);
237429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLeafSize(Mat, PetscInt);
237529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLeafSize(Mat, PetscInt *);
237629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLossyPrecision(Mat, PetscInt);
237729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLossyPrecision(Mat, PetscInt *);
237829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompButterflyLevels(Mat, PetscInt);
237929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompButterflyLevels(Mat, PetscInt *);
2380575704cbSPieter Ghysels #endif
2381575704cbSPieter Ghysels 
2382b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool);
23832216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *);
2384edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 13, 0, "MatBindToCPU()", ) static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg)
2385d71ae5a4SJacob Faibussowitsch {
23869371c9d4SSatish Balay   return MatBindToCPU(A, flg);
23879371c9d4SSatish Balay }
238865a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool);
2389e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *);
2390e7e92044SBarry Smith 
2391aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA
23923f9c0db1SPaul Mullowney /*E
23932ef1f0ffSBarry Smith     MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU)
23942692e278SPaul Mullowney     matrices.
2395e057df02SPaul Mullowney 
23962ef1f0ffSBarry Smith     Values:
239787497f52SBarry Smith +   `MAT_CUSPARSE_CSR` - Compressed Sparse Row
239887497f52SBarry Smith .   `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later).
239987497f52SBarry Smith -   `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later).
2400e057df02SPaul Mullowney 
2401e057df02SPaul Mullowney     Level: intermediate
2402e057df02SPaul Mullowney 
24031cc06b55SBarry Smith .seealso: [](ch_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation`
2404e057df02SPaul Mullowney E*/
2405e057df02SPaul Mullowney 
24069371c9d4SSatish Balay typedef enum {
24079371c9d4SSatish Balay   MAT_CUSPARSE_CSR,
24089371c9d4SSatish Balay   MAT_CUSPARSE_ELL,
24099371c9d4SSatish Balay   MAT_CUSPARSE_HYB
24109371c9d4SSatish Balay } MatCUSPARSEStorageFormat;
2411e057df02SPaul Mullowney 
2412e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */
2413e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[];
2414e057df02SPaul Mullowney 
24153f9c0db1SPaul Mullowney /*E
24162ef1f0ffSBarry Smith     MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU)
24172692e278SPaul Mullowney     matrices whose operation should use a particular storage format.
2418e057df02SPaul Mullowney 
24192ef1f0ffSBarry Smith     Values:
24204cf0e950SBarry Smith +   `MAT_CUSPARSE_MULT_DIAG`    - sets the storage format for the diagonal matrix in the parallel `MatMult()`
24214cf0e950SBarry Smith .   `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()`
24224cf0e950SBarry Smith .   `MAT_CUSPARSE_MULT`         - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()`
24232ef1f0ffSBarry Smith -   `MAT_CUSPARSE_ALL`          - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices
2424e057df02SPaul Mullowney 
2425e057df02SPaul Mullowney     Level: intermediate
2426e057df02SPaul Mullowney 
24271cc06b55SBarry Smith .seealso: [](ch_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat`
2428e057df02SPaul Mullowney E*/
24299371c9d4SSatish Balay typedef enum {
24309371c9d4SSatish Balay   MAT_CUSPARSE_MULT_DIAG,
24319371c9d4SSatish Balay   MAT_CUSPARSE_MULT_OFFDIAG,
24329371c9d4SSatish Balay   MAT_CUSPARSE_MULT,
24339371c9d4SSatish Balay   MAT_CUSPARSE_ALL
24349371c9d4SSatish Balay } MatCUSPARSEFormatOperation;
2435e057df02SPaul Mullowney 
243610e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
243710e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2438e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat);
2439365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool);
24405f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
24415f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
24425f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **);
24435f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **);
24445f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **);
24455f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **);
24465f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **);
24475f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **);
2448637a0070SStefano Zampini 
2449637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
2450637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
2451637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **);
2452637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **);
2453637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **);
2454637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **);
2455637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **);
2456637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **);
2457637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *);
2458d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *);
2459637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat);
24603d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *);
24612d1451d4SHong Zhang 
24622d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
24632d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
24649ae82921SPaul Mullowney #endif
24659ae82921SPaul Mullowney 
246647d993e7Ssuyashtn #ifdef PETSC_HAVE_HIP
246747d993e7Ssuyashtn /*E
24682ef1f0ffSBarry Smith     MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU)
246947d993e7Ssuyashtn     matrices.
247047d993e7Ssuyashtn 
24712ef1f0ffSBarry Smith     Values:
24722ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_CSR` - Compressed Sparse Row
24732ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_ELL` - Ellpack
24742ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format
247547d993e7Ssuyashtn 
247616a05f60SBarry Smith     Level: intermediate
247716a05f60SBarry Smith 
24781cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation`
247947d993e7Ssuyashtn E*/
248047d993e7Ssuyashtn 
248147d993e7Ssuyashtn typedef enum {
248247d993e7Ssuyashtn   MAT_HIPSPARSE_CSR,
248347d993e7Ssuyashtn   MAT_HIPSPARSE_ELL,
248447d993e7Ssuyashtn   MAT_HIPSPARSE_HYB
248547d993e7Ssuyashtn } MatHIPSPARSEStorageFormat;
248647d993e7Ssuyashtn 
248747d993e7Ssuyashtn /* these will be strings associated with enumerated type defined above */
248847d993e7Ssuyashtn PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[];
248947d993e7Ssuyashtn 
249047d993e7Ssuyashtn /*E
24912ef1f0ffSBarry Smith     MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU)
249247d993e7Ssuyashtn     matrices whose operation should use a particular storage format.
249347d993e7Ssuyashtn 
24942ef1f0ffSBarry Smith     Values:
24952ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_MULT_DIAG`    - sets the storage format for the diagonal matrix in the parallel `MatMult()`
24964cf0e950SBarry Smith .   `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()`
24972ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_MULT`         - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()`
24982ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_ALL`          - sets the storage format for all HIPSPARSE (GPU) matrices
24992ef1f0ffSBarry Smith 
250016a05f60SBarry Smith     Level: intermediate
250116a05f60SBarry Smith 
25021cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat`
250347d993e7Ssuyashtn E*/
250447d993e7Ssuyashtn typedef enum {
250547d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_DIAG,
250647d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_OFFDIAG,
250747d993e7Ssuyashtn   MAT_HIPSPARSE_MULT,
250847d993e7Ssuyashtn   MAT_HIPSPARSE_ALL
250947d993e7Ssuyashtn } MatHIPSPARSEFormatOperation;
251047d993e7Ssuyashtn 
251147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
251247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
251347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat);
251447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool);
251547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
251647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
251747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **);
251847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **);
251947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **);
252047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **);
252147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **);
252247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **);
252347d993e7Ssuyashtn 
252447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
252547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
252647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **);
252747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **);
252847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **);
252947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **);
253047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **);
253147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **);
253247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *);
253347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *);
253447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat);
25353d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *);
253647d993e7Ssuyashtn #endif
253747d993e7Ssuyashtn 
2538d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL)
2539d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2540d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2541d67ff14aSKarl Rupp #endif
2542d67ff14aSKarl Rupp 
25434bf303faSJacob Faibussowitsch #if PetscDefined(HAVE_KOKKOS)
25444bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
25454bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
25464bf303faSJacob Faibussowitsch #endif
25474bf303faSJacob Faibussowitsch 
254854efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW)
2549014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec);
2550014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec);
25512a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *);
255254efbe56SHong Zhang #endif
255354efbe56SHong Zhang 
2554d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
2555d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2556d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt);
2557d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *);
2558d24d4204SJose E. Roman #endif
2559d24d4204SJose E. Roman 
2560014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *);
2561014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *);
2562014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]);
2563014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]);
2564014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***);
2565014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *);
256619fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType);
2567014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]);
2568014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat);
2569d8588912SDave May 
25702ce66baaSPierre Jolivet PETSC_EXTERN PetscErrorCode MatFilter(Mat, PetscReal, PetscBool, PetscBool);
25712ce66baaSPierre Jolivet PETSC_DEPRECATED_FUNCTION(3, 20, 0, "MatFilter()", ) static inline PetscErrorCode MatChop(Mat A, PetscReal tol)
25722ce66baaSPierre Jolivet {
25732ce66baaSPierre Jolivet   return MatFilter(A, tol, PETSC_FALSE, PETSC_FALSE);
25742ce66baaSPierre Jolivet }
2575e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *);
25764325cce7SMatthew G Knepley 
2577b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **);
257853dd7562SDmitry Karpeev 
2579c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat);
2580c094ef40SMatthew G. Knepley 
258102218ef1SBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderMerge(Mat, Mat *);
2582539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *);
25831a2c6b5cSJunchao Zhang 
25847ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *);
258572833a62Smarkadams4 
2586e02fb3cdSMark Adams PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, PetscInt, PetscInt[], Mat *);
258758c11ad4SPierre Jolivet PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat, PetscBool);
2588ad6ad4e1SHansol  Suh 
2589d16ceb75SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *);
25903444e80cSBarry Smith 
25913444e80cSBarry Smith PETSC_EXTERN PetscErrorCode MatSetHPL(Mat, int);
25923444e80cSBarry Smith #define PETSCBMHPL "hpl"
2593