xref: /petsc/include/petscmat.h (revision bfe80ac4a46d58cb7760074b25f5e81b2f541d8a)
12eac72dbSBarry Smith /*
22eac72dbSBarry Smith      Include file for the matrix component of PETSc
32eac72dbSBarry Smith */
4a4963045SJacob Faibussowitsch #pragma once
5ac09b921SBarry Smith 
62c8e378dSBarry Smith #include <petscvec.h>
72eac72dbSBarry Smith 
8ac09b921SBarry Smith /* SUBMANSEC = Mat */
9ac09b921SBarry Smith 
10d9274352SBarry Smith /*S
118f6c3df8SBarry Smith    Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without
12af27ebaaSBarry Smith          an explicit sparse representation (such as matrix-free operators). Also used to hold representations of graphs
13af27ebaaSBarry Smith          for graph operations such as coloring, `MatColoringCreate()`
142eac72dbSBarry Smith 
15d91e6319SBarry Smith    Level: beginner
16d91e6319SBarry Smith 
172ef1f0ffSBarry Smith    Note:
181cc06b55SBarry Smith    See [](doc_matrix), [](ch_matrices) and `MatType` for available matrix types
192ef1f0ffSBarry Smith 
201cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()`
21d9274352SBarry Smith S*/
22d9274352SBarry Smith typedef struct _p_Mat *Mat;
23d9274352SBarry Smith 
2476bdecfbSBarry Smith /*J
250b4b7b1cSBarry Smith    MatType - String with the name of a PETSc matrix type. These are all the matrix formats that PETSc provides.
26d9274352SBarry Smith 
27d9274352SBarry Smith    Level: beginner
28d9274352SBarry Smith 
290b4b7b1cSBarry Smith    Notes:
302ef1f0ffSBarry Smith    [](doc_matrix) for a table of available matrix types
312ef1f0ffSBarry Smith 
32ce78bad3SBarry Smith    Use `MatSetType()` or the options database keys `-mat_type` or `-dm_mat_type` to set the matrix format to use for a given `Mat`
330b4b7b1cSBarry Smith 
341cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()`
3576bdecfbSBarry Smith J*/
3619fd82e9SBarry Smith typedef const char *MatType;
37273d9f13SBarry Smith #define MATSAME                      "same"
385a11e1b2SBarry Smith #define MATMAIJ                      "maij"
39273d9f13SBarry Smith #define MATSEQMAIJ                   "seqmaij"
40273d9f13SBarry Smith #define MATMPIMAIJ                   "mpimaij"
4149bd79ccSDebojyoti Ghosh #define MATKAIJ                      "kaij"
4249bd79ccSDebojyoti Ghosh #define MATSEQKAIJ                   "seqkaij"
4349bd79ccSDebojyoti Ghosh #define MATMPIKAIJ                   "mpikaij"
44273d9f13SBarry Smith #define MATIS                        "is"
455a11e1b2SBarry Smith #define MATAIJ                       "aij"
46273d9f13SBarry Smith #define MATSEQAIJ                    "seqaij"
47273d9f13SBarry Smith #define MATMPIAIJ                    "mpiaij"
485a11e1b2SBarry Smith #define MATAIJCRL                    "aijcrl"
495a11e1b2SBarry Smith #define MATSEQAIJCRL                 "seqaijcrl"
505a11e1b2SBarry Smith #define MATMPIAIJCRL                 "mpiaijcrl"
519ae82921SPaul Mullowney #define MATAIJCUSPARSE               "aijcusparse"
529ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE            "seqaijcusparse"
539ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE            "mpiaijcusparse"
5447d993e7Ssuyashtn #define MATAIJHIPSPARSE              "aijhipsparse"
5547d993e7Ssuyashtn #define MATSEQAIJHIPSPARSE           "seqaijhipsparse"
5647d993e7Ssuyashtn #define MATMPIAIJHIPSPARSE           "mpiaijhipsparse"
578c3ff71bSJunchao Zhang #define MATAIJKOKKOS                 "aijkokkos"
588c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS              "seqaijkokkos"
598c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS              "mpiaijkokkos"
60d67ff14aSKarl Rupp #define MATAIJVIENNACL               "aijviennacl"
61d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL            "seqaijviennacl"
62d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL            "mpiaijviennacl"
635a11e1b2SBarry Smith #define MATAIJPERM                   "aijperm"
645a11e1b2SBarry Smith #define MATSEQAIJPERM                "seqaijperm"
655a11e1b2SBarry Smith #define MATMPIAIJPERM                "mpiaijperm"
664dfdc2d9SRichard Tran Mills #define MATAIJSELL                   "aijsell"
674dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL                "seqaijsell"
684dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL                "mpiaijsell"
694a2a386eSRichard Tran Mills #define MATAIJMKL                    "aijmkl"
704a2a386eSRichard Tran Mills #define MATSEQAIJMKL                 "seqaijmkl"
714a2a386eSRichard Tran Mills #define MATMPIAIJMKL                 "mpiaijmkl"
72b5b72c8aSIrina Sokolova #define MATBAIJMKL                   "baijmkl"
73b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL                "seqbaijmkl"
74b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL                "mpibaijmkl"
75273d9f13SBarry Smith #define MATSHELL                     "shell"
76c1fff1c6SRichard Tran Mills #define MATCENTERING                 "centering"
775a11e1b2SBarry Smith #define MATDENSE                     "dense"
78637a0070SStefano Zampini #define MATDENSECUDA                 "densecuda"
7947d993e7Ssuyashtn #define MATDENSEHIP                  "densehip"
80209238afSKris Buschelman #define MATSEQDENSE                  "seqdense"
81bfc799aaSStefano Zampini #define MATSEQDENSECUDA              "seqdensecuda"
8247d993e7Ssuyashtn #define MATSEQDENSEHIP               "seqdensehip"
83273d9f13SBarry Smith #define MATMPIDENSE                  "mpidense"
84637a0070SStefano Zampini #define MATMPIDENSECUDA              "mpidensecuda"
8547d993e7Ssuyashtn #define MATMPIDENSEHIP               "mpidensehip"
86db31f6deSJed Brown #define MATELEMENTAL                 "elemental"
87d24d4204SJose E. Roman #define MATSCALAPACK                 "scalapack"
885a11e1b2SBarry Smith #define MATBAIJ                      "baij"
89273d9f13SBarry Smith #define MATSEQBAIJ                   "seqbaij"
90273d9f13SBarry Smith #define MATMPIBAIJ                   "mpibaij"
91273d9f13SBarry Smith #define MATMPIADJ                    "mpiadj"
925a11e1b2SBarry Smith #define MATSBAIJ                     "sbaij"
93273d9f13SBarry Smith #define MATSEQSBAIJ                  "seqsbaij"
94273d9f13SBarry Smith #define MATMPISBAIJ                  "mpisbaij"
95cebc7f6cSBarry Smith #define MATMFFD                      "mffd"
96c8a8475eSBarry Smith #define MATNORMAL                    "normal"
97c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN           "normalh"
98ab92ecdeSBarry Smith #define MATLRC                       "lrc"
992a6744ebSBarry Smith #define MATSCATTER                   "scatter"
100421e10b8SBarry Smith #define MATBLOCKMAT                  "blockmat"
101793850ffSBarry Smith #define MATCOMPOSITE                 "composite"
1021f8c7532SHong Zhang #define MATFFT                       "fft"
1031f8c7532SHong Zhang #define MATFFTW                      "fftw"
104e133240eSMatthew G Knepley #define MATSEQCUFFT                  "seqcufft"
10547d993e7Ssuyashtn #define MATSEQHIPFFT                 "seqhipfft"
106edd03b47SJacob Faibussowitsch #define MATTRANSPOSEMAT              PETSC_DEPRECATED_MACRO(3, 18, 0, "MATTRANSPOSEVIRTUAL", ) "transpose"
107013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL          "transpose"
108013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose"
10972ca8751SBarry Smith #define MATSCHURCOMPLEMENT           "schurcomplement"
1101d6018f0SLisandro Dalcin #define MATPYTHON                    "python"
11163c07aadSStefano Zampini #define MATHYPRE                     "hypre"
112f91d8e95SBarry Smith #define MATHYPRESTRUCT               "hyprestruct"
113a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT              "hypresstruct"
114ee1cef2cSJed Brown #define MATSUBMATRIX                 "submatrix"
1152c0dbf93SJed Brown #define MATLOCALREF                  "localref"
116d8588912SDave May #define MATNEST                      "nest"
117c094ef40SMatthew G. Knepley #define MATPREALLOCATOR              "preallocator"
118d4002b98SHong Zhang #define MATSELL                      "sell"
119d4002b98SHong Zhang #define MATSEQSELL                   "seqsell"
120d4002b98SHong Zhang #define MATMPISELL                   "mpisell"
1212d1451d4SHong Zhang #define MATSELLCUDA                  "sellcuda"
1222d1451d4SHong Zhang #define MATSEQSELLCUDA               "seqsellcuda"
1232d1451d4SHong Zhang #define MATMPISELLCUDA               "mpisellcuda"
124773bf0f6SHong Zhang #define MATSELLHIP                   "sellhip"
125773bf0f6SHong Zhang #define MATSEQSELLHIP                "seqsellhip"
126773bf0f6SHong Zhang #define MATMPISELLHIP                "mpisellhip"
127a3b2e22bSHong Zhang #define MATDUMMY                     "dummy"
128cd929ea3SAlp Dener #define MATLMVM                      "lmvm"
12978e4361aSAlp Dener #define MATLMVMDFP                   "lmvmdfp"
130bbb72809SHansol Suh #define MATLMVMDDFP                  "lmvmddfp"
13178e4361aSAlp Dener #define MATLMVMBFGS                  "lmvmbfgs"
132bbb72809SHansol Suh #define MATLMVMDBFGS                 "lmvmdbfgs"
133bbb72809SHansol Suh #define MATLMVMDQN                   "lmvmdqn"
13478e4361aSAlp Dener #define MATLMVMSR1                   "lmvmsr1"
135864588a7SAlp Dener #define MATLMVMBROYDEN               "lmvmbroyden"
136864588a7SAlp Dener #define MATLMVMBADBROYDEN            "lmvmbadbroyden"
137864588a7SAlp Dener #define MATLMVMSYMBROYDEN            "lmvmsymbroyden"
138864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN         "lmvmsymbadbroyden"
139864588a7SAlp Dener #define MATLMVMDIAGBROYDEN           "lmvmdiagbroyden"
1403423f386SBarry Smith #define MATCONSTANTDIAGONAL          "constantdiagonal"
141345a4b08SToby Isaac #define MATDIAGONAL                  "diagonal"
142c7a4214aSPierre Jolivet #define MATHTOOL                     "htool"
14353022affSStefano Zampini #define MATH2OPUS                    "h2opus"
144773941d6SBarry Smith 
14576bdecfbSBarry Smith /*J
146af27ebaaSBarry Smith    MatSolverType - String with the name of a PETSc factorization-based matrix solver type.
1479989ab13SBarry Smith 
148c2b89b5dSBarry Smith    For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc
1499989ab13SBarry Smith 
1509989ab13SBarry Smith    Level: beginner
1519989ab13SBarry Smith 
1522ef1f0ffSBarry Smith    Note:
15316a05f60SBarry Smith    `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as
15416a05f60SBarry Smith    a ./configure option to install them
155c7ccbb75SBarry Smith 
1561cc06b55SBarry Smith .seealso: [](sec_matfactor), [](ch_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()`
15776bdecfbSBarry Smith J*/
158ea799195SBarry Smith typedef const char *MatSolverType;
1592692d6eeSBarry Smith #define MATSOLVERSUPERLU      "superlu"
1602692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST "superlu_dist"
16108f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK    "strumpack"
1622692d6eeSBarry Smith #define MATSOLVERUMFPACK      "umfpack"
16320db9a53SJed Brown #define MATSOLVERCHOLMOD      "cholmod"
164d89f5e7aSBarry Smith #define MATSOLVERKLU          "klu"
165d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL    "elemental"
166d24d4204SJose E. Roman #define MATSOLVERSCALAPACK    "scalapack"
1672692d6eeSBarry Smith #define MATSOLVERESSL         "essl"
1682692d6eeSBarry Smith #define MATSOLVERLUSOL        "lusol"
1692692d6eeSBarry Smith #define MATSOLVERMUMPS        "mumps"
170d615f992SSatish Balay #define MATSOLVERMKL_PARDISO  "mkl_pardiso"
171d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO "mkl_cpardiso"
1722692d6eeSBarry Smith #define MATSOLVERPASTIX       "pastix"
1732692d6eeSBarry Smith #define MATSOLVERMATLAB       "matlab"
1742692d6eeSBarry Smith #define MATSOLVERPETSC        "petsc"
1752692d6eeSBarry Smith #define MATSOLVERBAS          "bas"
1769ae82921SPaul Mullowney #define MATSOLVERCUSPARSE     "cusparse"
177bfc799aaSStefano Zampini #define MATSOLVERCUDA         "cuda"
17847d993e7Ssuyashtn #define MATSOLVERHIPSPARSE    "hipsparse"
17947d993e7Ssuyashtn #define MATSOLVERHIP          "hip"
180930e68a5SMark Adams #define MATSOLVERKOKKOS       "kokkos"
181a2fc1e05SToby Isaac #define MATSOLVERSPQR         "spqr"
1821dd4f53aSPierre Jolivet #define MATSOLVERHTOOL        "htool"
183c0cdd4a1SDahai Guo 
184b24902e0SBarry Smith /*E
185b24902e0SBarry Smith     MatFactorType - indicates what type of factorization is requested
186b24902e0SBarry Smith 
1872ef1f0ffSBarry Smith     Values:
1882ef1f0ffSBarry Smith +  `MAT_FACTOR_LU`       - LU factorization
1892ef1f0ffSBarry Smith .  `MAT_FACTOR_CHOLESKY` - Cholesky factorization
1902ef1f0ffSBarry Smith .  `MAT_FACTOR_ILU`      - ILU factorization
1912ef1f0ffSBarry Smith .  `MAT_FACTOR_ICC`      - incomplete Cholesky factorization
1922ef1f0ffSBarry Smith .  `MAT_FACTOR_ILUDT`    - ILU factorization with drop tolerance
1932ef1f0ffSBarry Smith -  `MAT_FACTOR_QR`       - QR factorization
194b24902e0SBarry Smith 
19516a05f60SBarry Smith     Level: beginner
19616a05f60SBarry Smith 
1971cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()`
198b24902e0SBarry Smith E*/
1999371c9d4SSatish Balay typedef enum {
2009371c9d4SSatish Balay   MAT_FACTOR_NONE,
2019371c9d4SSatish Balay   MAT_FACTOR_LU,
2029371c9d4SSatish Balay   MAT_FACTOR_CHOLESKY,
2039371c9d4SSatish Balay   MAT_FACTOR_ILU,
2049371c9d4SSatish Balay   MAT_FACTOR_ICC,
2059371c9d4SSatish Balay   MAT_FACTOR_ILUDT,
2069371c9d4SSatish Balay   MAT_FACTOR_QR,
2079371c9d4SSatish Balay   MAT_FACTOR_NUM_TYPES
2089371c9d4SSatish Balay } MatFactorType;
209014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[];
210e92e720dSBarry Smith 
211ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *);
212ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *);
213f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *);
214edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 15, 0, "MatFactorGetCanUseOrdering()", ) static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b)
215d71ae5a4SJacob Faibussowitsch {
2169371c9d4SSatish Balay   return MatFactorGetCanUseOrdering(A, b);
2179371c9d4SSatish Balay }
218ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *);
219014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *);
2207abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType);
2218434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode(MatSolverFn)(Mat, MatFactorType, Mat *);
2228434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatSolverFn *MatSolverFunction;
22307e0ed13SBarry Smith 
2248434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFn *);
2258434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFn **);
226edd03b47SJacob Faibussowitsch typedef MatSolverType       MatSolverPackage PETSC_DEPRECATED_TYPEDEF(3, 9, 0, "MatSolverType", );
2278434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeRegister()", ) static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFn *f)
228d71ae5a4SJacob Faibussowitsch {
2299371c9d4SSatish Balay   return MatSolverTypeRegister(stype, mtype, ftype, f);
2309371c9d4SSatish Balay }
2318434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeGet()", ) static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFn **f)
232d71ae5a4SJacob Faibussowitsch {
2339371c9d4SSatish Balay   return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f);
2349371c9d4SSatish Balay }
2359989ab13SBarry Smith 
2364222ddf1SHong Zhang /*E
23795bd0b28SBarry Smith     MatProductType - indicates what type of matrix product to compute
2384222ddf1SHong Zhang 
2392ef1f0ffSBarry Smith     Values:
2402ef1f0ffSBarry Smith +  `MATPRODUCT_AB`   - product of two matrices
2412ef1f0ffSBarry Smith .  `MATPRODUCT_AtB`  - product of the transpose of a given matrix with a matrix
2422ef1f0ffSBarry Smith .  `MATPRODUCT_ABt`  - product of a matrix with the transpose of another given matrix
2432ef1f0ffSBarry Smith .  `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself
2442ef1f0ffSBarry Smith .  `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix
2452ef1f0ffSBarry Smith -  `MATPRODUCT_ABC`  - the product of three matrices
2462ef1f0ffSBarry Smith 
24716a05f60SBarry Smith     Level: beginner
24816a05f60SBarry Smith 
2491cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatProductSetType()`
2504222ddf1SHong Zhang E*/
2519371c9d4SSatish Balay typedef enum {
252ce78bad3SBarry Smith   MATPRODUCT_UNSPECIFIED,
2539371c9d4SSatish Balay   MATPRODUCT_AB,
2549371c9d4SSatish Balay   MATPRODUCT_AtB,
2559371c9d4SSatish Balay   MATPRODUCT_ABt,
2569371c9d4SSatish Balay   MATPRODUCT_PtAP,
2579371c9d4SSatish Balay   MATPRODUCT_RARt,
2589371c9d4SSatish Balay   MATPRODUCT_ABC
2599371c9d4SSatish Balay } MatProductType;
260544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[];
2614222ddf1SHong Zhang 
2624222ddf1SHong Zhang /*J
2634222ddf1SHong Zhang     MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation
2644222ddf1SHong Zhang 
2654222ddf1SHong Zhang    Level: beginner
2664222ddf1SHong Zhang 
2671cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType`
2684222ddf1SHong Zhang J*/
2694222ddf1SHong Zhang typedef const char *MatProductAlgorithm;
2703e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT         "default"
2713e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED          "sorted"
2723e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE        "scalable"
2733e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST    "scalable_fast"
2743e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP            "heap"
2753e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP           "btheap"
2763e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED     "llcondensed"
2773e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE        "rowmerge"
2783e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT    "outerproduct"
2793e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB             "at*b"
2803e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP             "rap"
2813e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE     "nonscalable"
2823e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI          "seqmpi"
2833e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND         "backend"
2843e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING     "overlapping"
2853e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED          "merged"
2863e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE       "allatonce"
2873e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged"
2883e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV      "allgatherv"
2893e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC          "cyclic"
2903e662e0bSHong Zhang #define MATPRODUCTALGORITHMHYPRE           "hypre"
2914222ddf1SHong Zhang 
2924222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *);
2934222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat);
2944222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType);
2954222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm);
2968fcac130SJose E. Roman PETSC_EXTERN PetscErrorCode MatProductGetAlgorithm(Mat, MatProductAlgorithm *);
2974222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal);
2984222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat);
2994222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat);
3004222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat);
3014222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat);
3024417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat);
3036718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer);
304c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *);
305c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *);
3064222ddf1SHong Zhang 
307c06d978dSMatthew Knepley /* Logging support */
3080700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */
309014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID;
310335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID;
311014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID;
312014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID;
313014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID;
314014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID;
315014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID;
316014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID;
317c06d978dSMatthew Knepley 
318ceb03754SKris Buschelman /*E
3192ef1f0ffSBarry Smith    MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions
320cf37664fSBarry Smith    are to be reused to store the new matrix values.
321cf37664fSBarry Smith 
3222ef1f0ffSBarry Smith    Values:
3232ef1f0ffSBarry Smith +  `MAT_INITIAL_MATRIX` - create a new matrix
3242ef1f0ffSBarry Smith .  `MAT_REUSE_MATRIX`   - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX`
3252ef1f0ffSBarry Smith .  `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions)
3262ef1f0ffSBarry Smith -  `MAT_IGNORE_MATRIX`  - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions)
327ceb03754SKris Buschelman 
328ceb03754SKris Buschelman     Level: beginner
329ceb03754SKris Buschelman 
3301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()`
331ceb03754SKris Buschelman E*/
3329371c9d4SSatish Balay typedef enum {
3339371c9d4SSatish Balay   MAT_INITIAL_MATRIX,
3349371c9d4SSatish Balay   MAT_REUSE_MATRIX,
3359371c9d4SSatish Balay   MAT_IGNORE_MATRIX,
3369371c9d4SSatish Balay   MAT_INPLACE_MATRIX
3379371c9d4SSatish Balay } MatReuse;
338ceb03754SKris Buschelman 
3395494a064SHong Zhang /*E
3402ef1f0ffSBarry Smith     MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()`
3412ef1f0ffSBarry Smith     include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`.
3425494a064SHong Zhang 
3432ef1f0ffSBarry Smith     Values:
3442ef1f0ffSBarry Smith +  `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values
3452ef1f0ffSBarry Smith -  `MAT_GET_VALUES`        - copy the matrix values
3462ef1f0ffSBarry Smith 
34795bd0b28SBarry Smith     Level: developer
34895bd0b28SBarry Smith 
3492ef1f0ffSBarry Smith     Developer Note:
3502ef1f0ffSBarry Smith     Why is not just a boolean used for this information?
3512ef1f0ffSBarry Smith 
3521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()`
3535494a064SHong Zhang E*/
3549371c9d4SSatish Balay typedef enum {
3559371c9d4SSatish Balay   MAT_DO_NOT_GET_VALUES,
3569371c9d4SSatish Balay   MAT_GET_VALUES
3579371c9d4SSatish Balay } MatCreateSubMatrixOption;
3585494a064SHong Zhang 
359607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void);
3604bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatFinalizePackage(void);
361c06d978dSMatthew Knepley 
362014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *);
36377433607SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFromOptions(MPI_Comm, const char *, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt);
36519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType);
3660d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *);
3670d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType);
368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat);
369fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]);
370bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat));
37123bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]);
372014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]);
37326cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]);
37426cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]);
375014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]);
376014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]);
3775d5d24bbSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatGetState(Mat, PetscObjectState *);
37884d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool);
379f69a0ea3SMatthew Knepley 
380140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList;
381140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList;
382140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList;
38328988994SBarry Smith 
3843b224e63SBarry Smith /*E
385aa6c7ce3SBarry Smith    MatStructure - Indicates if two matrices have the same nonzero structure
3863b224e63SBarry Smith 
3872ef1f0ffSBarry Smith    Values:
3882ef1f0ffSBarry Smith +  `SAME_NONZERO_PATTERN`      - the two matrices have identical nonzero patterns
3892ef1f0ffSBarry Smith .  `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns
3902ef1f0ffSBarry Smith .  `SUBSET_NONZERO_PATTERN`    - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix
3912ef1f0ffSBarry Smith -  `UNKNOWN_NONZERO_PATTERN`   - there is no known relationship between the nonzero patterns. In this case the implementations
3922ef1f0ffSBarry Smith                                  may try to detect a relationship to optimize the operation
393531d0c6aSBarry Smith 
39416a05f60SBarry Smith    Level: beginner
39516a05f60SBarry Smith 
396af27ebaaSBarry Smith    Note:
397af27ebaaSBarry Smith    Certain matrix operations (such as `MatAXPY()`) can run much faster if the sparsity pattern of the matrices are the same. But actually determining if
398af27ebaaSBarry Smith    the patterns are the same may be costly. This provides a way for users who know something about the sparsity patterns to provide this information
399af27ebaaSBarry Smith    to certain PETSc routines.
400af27ebaaSBarry Smith 
4011cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()`
4023b224e63SBarry Smith E*/
4039371c9d4SSatish Balay typedef enum {
4049371c9d4SSatish Balay   DIFFERENT_NONZERO_PATTERN,
4059371c9d4SSatish Balay   SUBSET_NONZERO_PATTERN,
4069371c9d4SSatish Balay   SAME_NONZERO_PATTERN,
4079371c9d4SSatish Balay   UNKNOWN_NONZERO_PATTERN
4089371c9d4SSatish Balay } MatStructure;
409d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[];
4103b224e63SBarry Smith 
4119779e05dSSatish Balay #if defined PETSC_HAVE_MKL_SPARSE
412ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
413ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
41480095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
415ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
41680095d54SIrina Sokolova #endif
417cd929ea3SAlp Dener 
4184bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
4194bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
4204bf303faSJacob Faibussowitsch 
421d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
422d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
423d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]);
424d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
42507e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *);
42607e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *);
42707e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *);
42807e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt);
429b921024eSHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *);
43080095d54SIrina Sokolova 
4314bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
4324bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
433fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
434fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetSeqSELL(Mat, Mat *, Mat *, const PetscInt *[]);
4354bf303faSJacob Faibussowitsch 
436014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
437014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
438014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
439014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
440014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4418f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4426a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]);
443014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *);
444c0c276a7Ssdargavi PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, PetscInt, PetscInt, Mat, Mat, PetscInt *, Mat *);
4453b00a383SHong Zhang 
446014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
447014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
448014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4497e8381f9SStefano Zampini 
450e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]);
45182a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]);
4527e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode);
453d21a29f3SJed Brown 
454014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *);
455014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
456d21a29f3SJed Brown 
457014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
458014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
45938f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
460014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4614cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]);
462dfb205c3SBarry Smith 
463014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *);
464c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *);
465014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *);
466c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *);
467986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *);
468267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *);
469bcf2175cSMatthew Knepley PETSC_EXTERN PetscErrorCode MatLRCSetMats(Mat, Mat, Mat, Vec, Mat);
470c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *);
471014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
472014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
473c0cdd4a1SDahai Guo 
474014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *);
475014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter);
476014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *);
477014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *);
478014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat);
479014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat);
4809371c9d4SSatish Balay typedef enum {
4819371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_RIGHT,
4829371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_LEFT
4839371c9d4SSatish Balay } MatCompositeMergeType;
4848c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType);
485014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *);
4860da935d5SPierre Jolivet /*E
4870da935d5SPierre Jolivet     MatCompositeType - indicates what type of `MATCOMPOSITE` is used
4880da935d5SPierre Jolivet 
4890da935d5SPierre Jolivet     Values:
4900da935d5SPierre Jolivet +  `MAT_COMPOSITE_ADDITIVE`       - sum of matrices (default)
4910da935d5SPierre Jolivet -  `MAT_COMPOSITE_MULTIPLICATIVE` - product of matrices
4920da935d5SPierre Jolivet 
4930da935d5SPierre Jolivet     Level: beginner
4940da935d5SPierre Jolivet 
4950da935d5SPierre Jolivet .seealso: [](ch_matrices), `MATCOMPOSITE`, `MatCompositeSetType()`, `MatCompositeGetType()`
4960da935d5SPierre Jolivet E*/
4979371c9d4SSatish Balay typedef enum {
4989371c9d4SSatish Balay   MAT_COMPOSITE_ADDITIVE,
4999371c9d4SSatish Balay   MAT_COMPOSITE_MULTIPLICATIVE
5009371c9d4SSatish Balay } MatCompositeType;
501014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType);
5026dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *);
5033b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure);
5043b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *);
5056d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *);
5068b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *);
50703049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *);
5086d7c1e57SBarry Smith 
50919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *);
510014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *);
511dedccee8SHong Zhang 
512014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *);
5138060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *);
514d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *);
51506511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *);
516fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *);
51765f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *);
51854e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *);
51954e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS);
520014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *);
5213423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *);
522345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatCreateDiagonal(Vec, Mat *);
523345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetDiagonal(Mat, Vec *);
524345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreDiagonal(Mat, Vec *);
525345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetInverseDiagonal(Mat, Vec *);
526345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreInverseDiagonal(Mat, Vec *);
5271472f72bSBarry Smith 
528978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE)
529d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
530978814f1SStefano Zampini #endif
531978814f1SStefano Zampini 
532014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]);
533ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]);
534cc4c1da9SBarry Smith PETSC_EXTERN PetscErrorCode MatPythonCreate(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const char[], Mat *);
5351d6018f0SLisandro Dalcin 
536846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat);
537674b392bSAlexander PETSC_EXTERN PetscErrorCode MatResetHash(Mat);
538014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat);
539014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *);
540e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *);
54121c89e3eSBarry Smith 
542014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat);
543014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat);
544014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat);
545014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *);
546014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *);
547713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **);
5480da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *);
549479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat);
5508a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *);
55120c04d79SPierre Jolivet PETSC_EXTERN PetscErrorCode MatComputeVariableBlockEnvelope(Mat);
55299cafbc1SBarry Smith 
553014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
5548a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode);
555014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
556014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]);
557014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]);
558014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]);
55973a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom);
56084cb2905SBarry Smith 
5612ef4de8bSBarry Smith /*S
5622ef1f0ffSBarry Smith    MatStencil - Data structure (C struct) for storing information about rows and
5632ef1f0ffSBarry Smith    columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()`
56462ef0227SBarry Smith 
5652ef1f0ffSBarry Smith    Level: beginner
5662ef1f0ffSBarry Smith 
5672ef1f0ffSBarry Smith    Notes:
56862ef0227SBarry Smith    The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored).
56915229ffcSPierre Jolivet    The c represents the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored.
57062ef0227SBarry Smith 
571ce78bad3SBarry Smith    For stencil access to vectors see `DMDAVecGetArray()`
572be479b30SJed Brown 
5732ef1f0ffSBarry Smith    For staggered grids, see `DMStagStencil`
5742ef4de8bSBarry Smith 
575ce78bad3SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`
5762ef1f0ffSBarry Smith           `DMStagStencil`
5772ef4de8bSBarry Smith S*/
578435da068SBarry Smith typedef struct {
579c1ac3661SBarry Smith   PetscInt k, j, i, c;
580435da068SBarry Smith } MatStencil;
5812ef4de8bSBarry Smith 
582014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
583014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
584014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt);
585435da068SBarry Smith 
586d91e6319SBarry Smith /*E
5872ef1f0ffSBarry Smith     MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use
588d91e6319SBarry Smith 
5892ef1f0ffSBarry Smith     Values:
5902ef1f0ffSBarry Smith +   `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix
5912ef1f0ffSBarry Smith -   `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted
5922ef1f0ffSBarry Smith 
59316a05f60SBarry Smith     Level: beginner
59416a05f60SBarry Smith 
5951cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()`
596d91e6319SBarry Smith E*/
5979371c9d4SSatish Balay typedef enum {
5989371c9d4SSatish Balay   MAT_FLUSH_ASSEMBLY = 1,
5999371c9d4SSatish Balay   MAT_FINAL_ASSEMBLY = 0
6009371c9d4SSatish Balay } MatAssemblyType;
6014f58015eSStefano Zampini 
602014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType);
603014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType);
604014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *);
6054f9c727eSBarry Smith 
606d91e6319SBarry Smith /*E
6072ef1f0ffSBarry Smith    MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage
608d91e6319SBarry Smith 
609d91e6319SBarry Smith    Level: beginner
610d91e6319SBarry Smith 
6112ef1f0ffSBarry Smith    Note:
6122ef1f0ffSBarry Smith    See `MatSetOption()` for the use of the options
6132ef1f0ffSBarry Smith 
6142ef1f0ffSBarry Smith    Developer Note:
61595452b02SPatrick Sanan    Entries that are negative need not be called collectively by all processes.
616382164b0SBarry Smith 
6171cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetOption()`
618d91e6319SBarry Smith E*/
6199371c9d4SSatish Balay typedef enum {
6209371c9d4SSatish Balay   MAT_OPTION_MIN                  = -3,
621c5e4d11fSDmitry Karpeev   MAT_UNUSED_NONZERO_LOCATION_ERR = -2,
62292d4d306SBarry Smith   MAT_ROW_ORIENTED                = -1,
623382164b0SBarry Smith   MAT_SYMMETRIC                   = 1,
624382164b0SBarry Smith   MAT_STRUCTURALLY_SYMMETRIC      = 2,
6258c78258cSHong Zhang   MAT_FORCE_DIAGONAL_ENTRIES      = 3,
626382164b0SBarry Smith   MAT_IGNORE_OFF_PROC_ENTRIES     = 4,
627382164b0SBarry Smith   MAT_USE_HASH_TABLE              = 5,
628382164b0SBarry Smith   MAT_KEEP_NONZERO_PATTERN        = 6,
629382164b0SBarry Smith   MAT_IGNORE_ZERO_ENTRIES         = 7,
630382164b0SBarry Smith   MAT_USE_INODES                  = 8,
631382164b0SBarry Smith   MAT_HERMITIAN                   = 9,
632382164b0SBarry Smith   MAT_SYMMETRY_ETERNAL            = 10,
633c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_LOCATION_ERR    = 11,
634382164b0SBarry Smith   MAT_IGNORE_LOWER_TRIANGULAR     = 12,
635382164b0SBarry Smith   MAT_ERROR_LOWER_TRIANGULAR      = 13,
636382164b0SBarry Smith   MAT_GETROW_UPPERTRIANGULAR      = 14,
637382164b0SBarry Smith   MAT_SPD                         = 15,
63892d4d306SBarry Smith   MAT_NO_OFF_PROC_ZERO_ROWS       = 16,
63992d4d306SBarry Smith   MAT_NO_OFF_PROC_ENTRIES         = 17,
64092d4d306SBarry Smith   MAT_NEW_NONZERO_LOCATIONS       = 18,
641c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_ALLOCATION_ERR  = 19,
642c5e4d11fSDmitry Karpeev   MAT_SUBSET_OFF_PROC_ENTRIES     = 20,
643c10200c1SHong Zhang   MAT_SUBMAT_SINGLEIS             = 21,
644957cac9fSHong Zhang   MAT_STRUCTURE_ONLY              = 22,
645071fcb05SBarry Smith   MAT_SORTED_FULL                 = 23,
6461a2c6b5cSJunchao Zhang   MAT_FORM_EXPLICIT_TRANSPOSE     = 24,
647b94d7dedSBarry Smith   MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25,
648b94d7dedSBarry Smith   MAT_SPD_ETERNAL                 = 26,
6499371c9d4SSatish Balay   MAT_OPTION_MAX                  = 27
6509371c9d4SSatish Balay } MatOption;
651e057df02SPaul Mullowney 
6520f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions;
653014dd563SJed Brown PETSC_EXTERN PetscErrorCode     MatSetOption(Mat, MatOption, PetscBool);
6547d68702bSBarry Smith PETSC_EXTERN PetscErrorCode     MatGetOption(Mat, MatOption, PetscBool *);
655856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode     MatPropagateSymmetryOptions(Mat, Mat);
65619fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode     MatGetType(Mat, MatType *);
65784cb2905SBarry Smith 
658014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
659014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
660014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
661014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRowUpperTriangular(Mat);
662014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRowUpperTriangular(Mat);
663014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetColumnVector(Mat, Vec, PetscInt);
6648c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArray(Mat, PetscScalar *[]);
6658f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]);
666d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]);
6678c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArray(Mat, PetscScalar *[]);
6688f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]);
669d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]);
67021e72a00SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *);
671bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
6724099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetType(Mat, MatType);
673ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode    MatSeqAIJKron(Mat, Mat, MatReuse, Mat *);
674388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode    MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *));
6754099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList;
676cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJGetArray(Mat, PetscScalar *[]);
677cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJRestoreArray(Mat, PetscScalar *[]);
6788397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJGetArray(Mat, PetscScalar *[]);
6798397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]);
6808c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArray(Mat, PetscScalar *[]);
6818c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArray(Mat, PetscScalar *[]);
682d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDensePlaceArray(Mat, const PetscScalar[]);
683d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseReplaceArray(Mat, const PetscScalar[]);
684d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseResetArray(Mat);
6858572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArrayRead(Mat, const PetscScalar *[]);
6868572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayRead(Mat, const PetscScalar *[]);
6876947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWrite(Mat, PetscScalar *[]);
6886947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWrite(Mat, PetscScalar *[]);
689cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *);
690cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]);
691cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *);
692cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]);
693cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *);
694cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]);
695014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSize(Mat, PetscInt *);
696014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSize(Mat, PetscInt);
697014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSizes(Mat, PetscInt *, PetscInt *);
698014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizes(Mat, PetscInt, PetscInt);
69933d57670SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizesFromMats(Mat, Mat, Mat);
7006e25ca73SStefano Zampini PETSC_EXTERN PetscErrorCode    MatSetVariableBlockSizes(Mat, PetscInt, const PetscInt[]);
7016e25ca73SStefano Zampini PETSC_EXTERN PetscErrorCode    MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt *[]);
7020da83c2eSBarry Smith 
70386aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]);
70486aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]);
7056947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *);
7066947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *);
7076947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *);
7086947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *);
7096947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *);
7106947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *);
711a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
7125ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *);
7131620fd73SBarry Smith 
714014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec);
715014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec);
716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec);
717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec);
718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec);
719014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *);
720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *);
721014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec);
722014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec);
723014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat);
724bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat);
725eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat);
726f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec);
727f5edf698SHong Zhang 
728d91e6319SBarry Smith /*E
729d91e6319SBarry Smith   MatDuplicateOption - Indicates if a duplicated sparse matrix should have
730d91e6319SBarry Smith   its numerical values copied over or just its nonzero structure.
731d91e6319SBarry Smith 
7322ef1f0ffSBarry Smith   Values:
7332ef1f0ffSBarry Smith + `MAT_DO_NOT_COPY_VALUES`    - Create a matrix using the same nonzero pattern as the original matrix,
7342ef1f0ffSBarry Smith                                 with zeros for the numerical values
7352ef1f0ffSBarry Smith . `MAT_COPY_VALUES`           - Create a matrix with the same nonzero pattern as the original matrix
7362ef1f0ffSBarry Smith                                 and with the same numerical values.
7372ef1f0ffSBarry Smith - `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix
7382ef1f0ffSBarry Smith                                 and does not copy it, using zeros for the numerical values. The parent and
7392ef1f0ffSBarry Smith                                 child matrices will share their index (i and j) arrays, and you cannot
7402ef1f0ffSBarry Smith                                 insert new nonzero entries into either matrix
7410018da39SRichard Tran Mills 
74216a05f60SBarry Smith   Level: beginner
74316a05f60SBarry Smith 
74487497f52SBarry Smith   Note:
74587497f52SBarry Smith   Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in
74687497f52SBarry Smith   this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified.
74770dcbbb9SBarry Smith 
7481cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicate()`
749d91e6319SBarry Smith E*/
7509371c9d4SSatish Balay typedef enum {
7519371c9d4SSatish Balay   MAT_DO_NOT_COPY_VALUES,
7529371c9d4SSatish Balay   MAT_COPY_VALUES,
7539371c9d4SSatish Balay   MAT_SHARE_NONZERO_PATTERN
7549371c9d4SSatish Balay } MatDuplicateOption;
7552e8a6d31SBarry Smith 
75619fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *);
757014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *);
75894a9d846SBarry Smith 
759014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure);
760014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer);
761014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *);
762014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *);
763014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *);
764014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *);
765014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *);
766b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *);
767b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *);
768014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *);
769014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer);
7707b80b807SBarry Smith 
7711a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7721a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7731a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7741a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
775d4fbbf0eSBarry Smith 
776d91e6319SBarry Smith /*S
77787497f52SBarry Smith    MatInfo - Context of matrix information, used with `MatGetInfo()`
778d91e6319SBarry Smith 
779d91e6319SBarry Smith    Level: intermediate
780d91e6319SBarry Smith 
7812ef1f0ffSBarry Smith    Fortran Note:
782687234bfSJose E. Roman    `MatInfo` is a derived type, use e.g. `matinfo%nz_allocated` to access its components.
7832ef1f0ffSBarry Smith 
7841cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetInfo()`, `MatInfoType`
785d91e6319SBarry Smith S*/
7864e220ebcSLois Curfman McInnes typedef struct {
787b0a32e0cSBarry Smith   PetscLogDouble block_size;                          /* block size */
788b0a32e0cSBarry Smith   PetscLogDouble nz_allocated, nz_used, nz_unneeded;  /* number of nonzeros */
789b0a32e0cSBarry Smith   PetscLogDouble memory;                              /* memory allocated */
790b0a32e0cSBarry Smith   PetscLogDouble assemblies;                          /* number of matrix assemblies called */
791b0a32e0cSBarry Smith   PetscLogDouble mallocs;                             /* number of mallocs during MatSetValues() */
792b0a32e0cSBarry Smith   PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */
793b0a32e0cSBarry Smith   PetscLogDouble factor_mallocs;                      /* number of mallocs during factorization */
7944e220ebcSLois Curfman McInnes } MatInfo;
7954e220ebcSLois Curfman McInnes 
796d9274352SBarry Smith /*E
797d9274352SBarry Smith     MatInfoType - Indicates if you want information about the local part of the matrix,
798d9274352SBarry Smith     the entire parallel matrix or the maximum over all the local parts.
799d9274352SBarry Smith 
8002ef1f0ffSBarry Smith     Values:
8012ef1f0ffSBarry Smith +   `MAT_LOCAL`      - values for each MPI process part of the matrix
8022ef1f0ffSBarry Smith .   `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes
8032ef1f0ffSBarry Smith -   `MAT_GLOBAL_SUM` - sum of each value over all MPI processes
804d9274352SBarry Smith 
80516a05f60SBarry Smith     Level: beginner
80616a05f60SBarry Smith 
8071cc06b55SBarry Smith .seealso: [](ch_matrices), `MatGetInfo()`, `MatInfo`
808d9274352SBarry Smith E*/
8099371c9d4SSatish Balay typedef enum {
8109371c9d4SSatish Balay   MAT_LOCAL      = 1,
8119371c9d4SSatish Balay   MAT_GLOBAL_MAX = 2,
8129371c9d4SSatish Balay   MAT_GLOBAL_SUM = 3
8139371c9d4SSatish Balay } MatInfoType;
814014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *);
815014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec);
816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]);
817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]);
818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]);
819eede4a3fSMark Adams PETSC_EXTERN PetscErrorCode MatGetRowSumAbs(Mat, Vec);
820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]);
821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec);
822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *);
8237fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *);
8247fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat);
825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *);
826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *);
827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec);
828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode);
829a52676ecSHong Zhang 
830014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *);
831014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *);
832014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *);
833014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
834014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
835e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
836e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
837a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
838a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
839cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
8404222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
841447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
84286919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *);
8437b80b807SBarry Smith 
844014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *);
845014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *);
846857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *);
847857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *);
848857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *);
849857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *);
850857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *);
851857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *);
852857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *);
853014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat);
8541b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat);
855014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
856014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec);
857014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
858014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
859014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
860014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec);
8617b80b807SBarry Smith 
862014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *);
863014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *);
864014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *);
865014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **);
866014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *);
867014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **);
868566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *);
8695ef9f2a5SBarry Smith 
8707dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
871edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrices()", ) static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
872d71ae5a4SJacob Faibussowitsch {
8739371c9d4SSatish Balay   return MatCreateSubMatrices(mat, n, irow, icol, scall, submat);
8749371c9d4SSatish Balay }
8757dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
876edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatricesMPI()", ) static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
877d71ae5a4SJacob Faibussowitsch {
8789371c9d4SSatish Balay   return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat);
8799371c9d4SSatish Balay }
880014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]);
881df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]);
8827dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *);
883edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrix()", ) static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat)
884d71ae5a4SJacob Faibussowitsch {
8859371c9d4SSatish Balay   return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat);
8869371c9d4SSatish Balay }
887014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *);
888014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *);
889014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *);
890014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *);
8917b80b807SBarry Smith 
892014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *);
893014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *);
894014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat);
895014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *);
8968a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *);
897014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
898ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *);
899f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *);
900014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *);
901014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]);
9028efafbd8SBarry Smith 
903014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt);
904ce78bad3SBarry Smith PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat, PetscInt, IS[], PetscInt);
905d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool);
9067b80b807SBarry Smith 
907014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
90822440eb1SKris Buschelman 
9097bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
9102df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
9117bab7c10SHong Zhang 
912014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *);
913014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *);
91422440eb1SKris Buschelman 
915014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
916014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *);
917bc011b1eSHong Zhang 
918014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure);
919014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure);
9201c741599SHong Zhang 
921014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar);
922014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar);
9237b80b807SBarry Smith 
924014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping);
925014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
926a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *);
92781fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout);
928014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
929014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
930014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
931014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
932e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
933014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
934014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
935052efed2SBarry Smith 
936014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt);
937014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *);
93890f02eecSBarry Smith 
939014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec);
940014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec);
941014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec);
94230b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *);
94330b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *);
94430b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *);
9452a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *);
946edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 6, 0, "MatCreateVecs()", ) static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y)
947d71ae5a4SJacob Faibussowitsch {
9489371c9d4SSatish Balay   return MatCreateVecs(mat, x, y);
9499371c9d4SSatish Balay }
95053cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *);
951014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *);
952014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *);
9533a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *);
9549c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *);
955bd481603SBarry Smith 
956fe1fc275SAlexander PETSC_EXTERN PetscErrorCode MatCopyHashToXAIJ(Mat A, Mat B);
957c8d6c325SJunchao Zhang /*@C
9581620fd73SBarry Smith    MatSetValue - Set a single entry into a matrix.
9591620fd73SBarry Smith 
960e1c5b2e2SJose E. Roman    Not Collective
961a9834a7dSSatish Balay 
9621620fd73SBarry Smith    Input Parameters:
963c8d6c325SJunchao Zhang +  mat  - the matrix
96416a05f60SBarry Smith .  i    - the row location of the entry
96516a05f60SBarry Smith .  j    - the column location of the entry
96616a05f60SBarry Smith .  va   - the value to insert
96787497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
9681620fd73SBarry Smith 
9691620fd73SBarry Smith    Level: beginner
9701620fd73SBarry Smith 
97195bd0b28SBarry Smith    Notes:
97295bd0b28SBarry Smith    This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()`
97395bd0b28SBarry Smith    MUST be called after all calls to `MatSetValue()` have been completed.
97495bd0b28SBarry Smith 
9752ef1f0ffSBarry Smith    For efficiency one should use `MatSetValues()` and set several values simultaneously.
9762ef1f0ffSBarry Smith 
977b43fc34aSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `InsertMode`, `MatGetValue()`, `MatSetValues()`,
9782ef1f0ffSBarry Smith           `MatSetValueLocal()`, `MatSetValuesLocal()`
979c8d6c325SJunchao Zhang @*/
980c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValue(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
981d71ae5a4SJacob Faibussowitsch {
982c8d6c325SJunchao Zhang   return MatSetValues(mat, 1, &i, 1, &j, &va, mode);
9839371c9d4SSatish Balay }
9841620fd73SBarry Smith 
985e5e5a7b5SPatrick Sanan /*@C
986e5e5a7b5SPatrick Sanan    MatGetValue - Gets a single value from a matrix
9871620fd73SBarry Smith 
988e5e5a7b5SPatrick Sanan    Not Collective; can only return a value owned by the given process
989e5e5a7b5SPatrick Sanan 
990e5e5a7b5SPatrick Sanan    Input Parameters:
991e5e5a7b5SPatrick Sanan +  mat - the matrix
992e5e5a7b5SPatrick Sanan .  row - the row location of the entry
993e5e5a7b5SPatrick Sanan -  col - the column location of the entry
994e5e5a7b5SPatrick Sanan 
995e5e5a7b5SPatrick Sanan    Output Parameter:
996e5e5a7b5SPatrick Sanan .  va - the value
997e5e5a7b5SPatrick Sanan 
9982ef1f0ffSBarry Smith    Level: advanced
9992ef1f0ffSBarry Smith 
1000e5e5a7b5SPatrick Sanan    Notes:
1001b43fc34aSPierre Jolivet    The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd()` before this call
10022ef1f0ffSBarry Smith 
100387497f52SBarry Smith    For efficiency one should use `MatGetValues()` and get several values simultaneously.
1004e5e5a7b5SPatrick Sanan 
100587497f52SBarry Smith    See notes for `MatGetValues()`.
1006e5e5a7b5SPatrick Sanan 
1007*bfe80ac4SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValue()`, `MatGetValuesLocal()`, `MatGetValues()`
1008e5e5a7b5SPatrick Sanan @*/
1009d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va)
1010d71ae5a4SJacob Faibussowitsch {
10119371c9d4SSatish Balay   return MatGetValues(mat, 1, &row, 1, &col, va);
10129371c9d4SSatish Balay }
1013e5e5a7b5SPatrick Sanan 
1014c8d6c325SJunchao Zhang /*@C
10152ef1f0ffSBarry Smith    MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes.
1016e5e5a7b5SPatrick Sanan 
1017e5e5a7b5SPatrick Sanan    Not Collective
1018e5e5a7b5SPatrick Sanan 
1019e5e5a7b5SPatrick Sanan    Input Parameters:
1020c8d6c325SJunchao Zhang +  mat  - the matrix
102116a05f60SBarry Smith .  i    - the row location of the entry
102216a05f60SBarry Smith .  j    - the column location of the entry
102316a05f60SBarry Smith .  va   - the value to insert
102487497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
1025e5e5a7b5SPatrick Sanan 
10262ef1f0ffSBarry Smith    Level: intermediate
10272ef1f0ffSBarry Smith 
1028e5e5a7b5SPatrick Sanan    Notes:
102987497f52SBarry Smith    For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously.
1030e5e5a7b5SPatrick Sanan 
103187497f52SBarry Smith    See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used.
1032e5e5a7b5SPatrick Sanan 
10331cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSetValue()`, `MatSetValuesLocal()`
1034c8d6c325SJunchao Zhang @*/
1035c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValueLocal(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
1036d71ae5a4SJacob Faibussowitsch {
1037c8d6c325SJunchao Zhang   return MatSetValuesLocal(mat, 1, &i, 1, &j, &va, mode);
10389371c9d4SSatish Balay }
10391620fd73SBarry Smith 
10401620fd73SBarry Smith /*MC
1041d0609cedSBarry Smith    MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per
1042bd481603SBarry Smith    row in a matrix providing the data that one can use to correctly preallocate the matrix.
1043bd481603SBarry Smith 
1044bd481603SBarry Smith    Synopsis:
1045aaa7dc30SBarry Smith    #include <petscmat.h>
1046d0609cedSBarry Smith    PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz)
1047bd481603SBarry Smith 
1048d083f849SBarry Smith    Collective
1049bd481603SBarry Smith 
1050bd481603SBarry Smith    Input Parameters:
1051bd481603SBarry Smith +  comm  - the communicator that will share the eventually allocated matrix
1052859fcb39SBarry Smith .  nrows - the number of LOCAL rows in the matrix
1053859fcb39SBarry Smith -  ncols - the number of LOCAL columns in the matrix
1054bd481603SBarry Smith 
1055bd481603SBarry Smith    Output Parameters:
1056bd481603SBarry Smith +  dnz - the array that will be passed to the matrix preallocation routines
1057a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1058bd481603SBarry Smith 
10592ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1060bd481603SBarry Smith 
1061bd481603SBarry Smith    Notes:
10622ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
10632ef1f0ffSBarry Smith    the use of this routine
10642ef1f0ffSBarry Smith 
1065d0609cedSBarry Smith    This is a macro that handles its own error checking, it does not return an error code.
1066d0609cedSBarry Smith 
10672ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1068bd481603SBarry Smith 
10692ef1f0ffSBarry Smith    Developer Note:
1070af27ebaaSBarry Smith    This is a MACRO, not a function, because it has a leading { that is closed by `PetscPreallocateFinalize()`.
1071bd481603SBarry Smith 
10721cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1073db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1074bd481603SBarry Smith M*/
10759371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \
10769371c9d4SSatish Balay   do { \
10773ba16761SJacob Faibussowitsch     PetscInt              __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \
10783ba16761SJacob Faibussowitsch     PetscInt PETSC_UNUSED __start; \
10799566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \
10809566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \
10819371c9d4SSatish Balay     __start = __end - __ncols; \
10829371c9d4SSatish Balay     (void)__start; \
10839566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \
10845f80ce2aSJacob Faibussowitsch   __rstart -= __nrows
10857c922b88SBarry Smith 
1086edd03b47SJacob Faibussowitsch #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateBegin()", ) MatPreallocateBegin(__VA_ARGS__)
1087d0609cedSBarry Smith 
1088bd481603SBarry Smith /*MC
1089bd481603SBarry Smith    MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1090bd481603SBarry Smith    inserted using a local number of the rows and columns
1091bd481603SBarry Smith 
1092bd481603SBarry Smith    Synopsis:
1093aaa7dc30SBarry Smith    #include <petscmat.h>
1094c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1095bd481603SBarry Smith 
1096bd481603SBarry Smith    Not Collective
1097bd481603SBarry Smith 
1098bd481603SBarry Smith    Input Parameters:
1099784ac674SJed Brown +  map   - the row mapping from local numbering to global numbering
1100bd481603SBarry Smith .  nrows - the number of rows indicated
11011d73ed98SBarry Smith .  rows  - the indices of the rows
1102784ac674SJed Brown .  cmap  - the column mapping from local to global numbering
1103bd481603SBarry Smith .  ncols - the number of columns in the matrix
1104bd481603SBarry Smith .  cols  - the columns indicated
1105bd481603SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1106a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1107bd481603SBarry Smith 
11082ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1109bd481603SBarry Smith 
1110bd481603SBarry Smith    Notes:
11112ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11122ef1f0ffSBarry Smith    the use of this routine
1113bd481603SBarry Smith 
11142ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1115bd481603SBarry Smith 
11161cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1117db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()`
1118bd481603SBarry Smith M*/
111994bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11209371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1121c4f061fbSSatish Balay 
1122bd481603SBarry Smith /*MC
1123c1154cd5SBarry Smith    MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1124c1154cd5SBarry Smith    inserted using a local number of the rows and columns. This version removes any duplicate columns in cols
1125c1154cd5SBarry Smith 
1126c1154cd5SBarry Smith    Synopsis:
1127c1154cd5SBarry Smith    #include <petscmat.h>
1128c1154cd5SBarry Smith    PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1129c1154cd5SBarry Smith 
1130c1154cd5SBarry Smith    Not Collective
1131c1154cd5SBarry Smith 
1132c1154cd5SBarry Smith    Input Parameters:
1133c1154cd5SBarry Smith +  map   - the row mapping from local numbering to global numbering
1134c1154cd5SBarry Smith .  nrows - the number of rows indicated
1135c1154cd5SBarry Smith .  rows  - the indices of the rows (these values are mapped to the global values)
1136c1154cd5SBarry Smith .  cmap  - the column mapping from local to global numbering
1137c1154cd5SBarry Smith .  ncols - the number of columns in the matrix   (this value will be changed if duplicate columns are found)
1138c1154cd5SBarry Smith .  cols  - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed)
1139c1154cd5SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1140a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1141c1154cd5SBarry Smith 
11422ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1143c1154cd5SBarry Smith 
1144c1154cd5SBarry Smith    Notes:
11452ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11462ef1f0ffSBarry Smith    the use of this routine
1147c1154cd5SBarry Smith 
11482ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1149c1154cd5SBarry Smith 
11501cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1151db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1152c1154cd5SBarry Smith M*/
115394bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11549371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1155c1154cd5SBarry Smith 
1156c1154cd5SBarry Smith /*MC
1157d6e23781SBarry Smith    MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1158bd481603SBarry Smith    inserted using a local number of the rows and columns
1159bd481603SBarry Smith 
1160bd481603SBarry Smith    Synopsis:
1161aaa7dc30SBarry Smith    #include <petscmat.h>
1162d6e23781SBarry Smith    PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1163d6e23781SBarry Smith 
1164d6e23781SBarry Smith    Not Collective
1165d6e23781SBarry Smith 
1166d6e23781SBarry Smith    Input Parameters:
1167d6e23781SBarry Smith +  map   - the row mapping from local numbering to global numbering
1168d6e23781SBarry Smith .  nrows - the number of rows indicated
1169d6e23781SBarry Smith .  rows  - the indices of the rows
1170d6e23781SBarry Smith .  cmap  - the column mapping from local to global numbering
1171d6e23781SBarry Smith .  ncols - the number of columns in the matrix
1172d6e23781SBarry Smith .  cols  - the columns indicated
1173d6e23781SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1174a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1175d6e23781SBarry Smith 
11762ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1177d6e23781SBarry Smith 
1178d6e23781SBarry Smith    Notes:
11792ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11802ef1f0ffSBarry Smith    the use of this routine
1181d6e23781SBarry Smith 
11822ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1183d6e23781SBarry Smith 
11841cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1185db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`
1186d6e23781SBarry Smith M*/
118794bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11889371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1189d6e23781SBarry Smith 
1190d6e23781SBarry Smith /*MC
1191d6e23781SBarry Smith    MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1192d6e23781SBarry Smith    inserted using a local number of the rows and columns
1193d6e23781SBarry Smith 
1194d6e23781SBarry Smith    Synopsis:
1195d6e23781SBarry Smith    #include <petscmat.h>
1196d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1197bd481603SBarry Smith 
1198bd481603SBarry Smith    Not Collective
1199bd481603SBarry Smith 
1200bd481603SBarry Smith    Input Parameters:
1201bd481603SBarry Smith +  map   - the mapping between local numbering and global numbering
1202bd481603SBarry Smith .  nrows - the number of rows indicated
12031d73ed98SBarry Smith .  rows  - the indices of the rows
1204bd481603SBarry Smith .  ncols - the number of columns in the matrix
1205bd481603SBarry Smith .  cols  - the columns indicated
1206bd481603SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1207a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1208bd481603SBarry Smith 
12092ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1210bd481603SBarry Smith 
1211bd481603SBarry Smith    Notes:
12122ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12132ef1f0ffSBarry Smith    the use of this routine
1214bd481603SBarry Smith 
12152ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1216bd481603SBarry Smith 
12171cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`
1218db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1219bd481603SBarry Smith M*/
122094bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \
12219371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));)
1222e83a5d19SLisandro Dalcin 
1223bd481603SBarry Smith /*MC
1224bd481603SBarry Smith    MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1225bd481603SBarry Smith    inserted using a local number of the rows and columns
1226bd481603SBarry Smith 
1227bd481603SBarry Smith    Synopsis:
1228aaa7dc30SBarry Smith    #include <petscmat.h>
1229c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1230bd481603SBarry Smith 
1231bd481603SBarry Smith    Not Collective
1232bd481603SBarry Smith 
1233bd481603SBarry Smith    Input Parameters:
123464075487SBarry Smith +  row   - the row
1235bd481603SBarry Smith .  ncols - the number of columns in the matrix
1236a50f8bf6SHong Zhang -  cols  - the columns indicated
1237a50f8bf6SHong Zhang 
1238a50f8bf6SHong Zhang    Output Parameters:
1239a50f8bf6SHong Zhang +  dnz - the array that will be passed to the matrix preallocation routines
1240a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1241bd481603SBarry Smith 
12422ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1243bd481603SBarry Smith 
1244bd481603SBarry Smith    Notes:
12452ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12462ef1f0ffSBarry Smith    the use of this routine
1247bd481603SBarry Smith 
12482ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1249bd481603SBarry Smith 
1250af27ebaaSBarry Smith    This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin().
12511620fd73SBarry Smith 
12521cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1253db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1254bd481603SBarry Smith M*/
12559371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \
12569371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \
125764075487SBarry Smith     if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \
1258a6042fd4SStefano Zampini     else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12599371c9d4SSatish Balay   })
12607c922b88SBarry Smith 
1261bd481603SBarry Smith /*MC
1262d6e23781SBarry Smith    MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1263bd481603SBarry Smith    inserted using a local number of the rows and columns
1264bd481603SBarry Smith 
1265bd481603SBarry Smith    Synopsis:
1266aaa7dc30SBarry Smith    #include <petscmat.h>
1267d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1268bd481603SBarry Smith 
1269bd481603SBarry Smith    Not Collective
1270bd481603SBarry Smith 
1271bd481603SBarry Smith    Input Parameters:
1272bd481603SBarry Smith +  nrows - the number of rows indicated
12731d73ed98SBarry Smith .  rows  - the indices of the rows
1274bd481603SBarry Smith .  ncols - the number of columns in the matrix
1275bd481603SBarry Smith .  cols  - the columns indicated
1276bd481603SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1277a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1278bd481603SBarry Smith 
12792ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1280bd481603SBarry Smith 
1281bd481603SBarry Smith    Notes:
12822ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12832ef1f0ffSBarry Smith    the use of this routine
1284bd481603SBarry Smith 
12852ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1286bd481603SBarry Smith 
1287af27ebaaSBarry Smith    This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin().
12881620fd73SBarry Smith 
12891cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`,
1290db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1291bd481603SBarry Smith M*/
129294bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \
12939371c9d4SSatish Balay   PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \
1294d3d32019SBarry Smith     if (cols[__i] >= __end) onz[row - __rstart]++; \
1295a6042fd4SStefano Zampini     else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12969371c9d4SSatish Balay   })
1297d3d32019SBarry Smith 
1298bd481603SBarry Smith /*MC
1299a6042fd4SStefano Zampini    MatPreallocateLocation -  An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists
130016371a99SBarry Smith 
130116371a99SBarry Smith    Synopsis:
1302aaa7dc30SBarry Smith    #include <petscmat.h>
130316371a99SBarry Smith    PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz)
130416371a99SBarry Smith 
130516371a99SBarry Smith    Not Collective
130616371a99SBarry Smith 
130716371a99SBarry Smith    Input Parameters:
1308a2b725a8SWilliam Gropp +  A     - matrix
130916371a99SBarry Smith .  row   - row where values exist (must be local to this process)
131016371a99SBarry Smith .  ncols - number of columns
131116371a99SBarry Smith .  cols  - columns with nonzeros
131216371a99SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1313a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
131416371a99SBarry Smith 
13152ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
131616371a99SBarry Smith 
131716371a99SBarry Smith    Notes:
13182ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
13192ef1f0ffSBarry Smith    the use of this routine
132016371a99SBarry Smith 
13212ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
132216371a99SBarry Smith 
1323af27ebaaSBarry Smith    Developer Note:
1324af27ebaaSBarry Smith    This is a MACRO, not a function, because it uses a bunch of variables private to the MatPreallocation.... routines.
132516371a99SBarry Smith 
13261cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1327db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
132816371a99SBarry Smith M*/
1329d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz))
133016371a99SBarry Smith 
133116371a99SBarry Smith /*MC
1332d0609cedSBarry Smith    MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per
1333bd481603SBarry Smith    row in a matrix providing the data that one can use to correctly preallocate the matrix.
1334bd481603SBarry Smith 
1335bd481603SBarry Smith    Synopsis:
1336aaa7dc30SBarry Smith    #include <petscmat.h>
1337d0609cedSBarry Smith    PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz)
1338bd481603SBarry Smith 
1339d083f849SBarry Smith    Collective
1340bd481603SBarry Smith 
1341bd481603SBarry Smith    Input Parameters:
134216371a99SBarry Smith +  dnz - the array that was be passed to the matrix preallocation routines
1343a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1344bd481603SBarry Smith 
13452ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1346bd481603SBarry Smith 
1347bd481603SBarry Smith    Notes:
13482ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
13492ef1f0ffSBarry Smith    the use of this routine
1350d0609cedSBarry Smith 
13512ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1352bd481603SBarry Smith 
13532ef1f0ffSBarry Smith    Developer Note:
1354af27ebaaSBarry Smith    This is a MACRO, not a function, because it closes the { started in MatPreallocateBegin().
13551620fd73SBarry Smith 
13561cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1357db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1358bd481603SBarry Smith M*/
13599371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \
13609371c9d4SSatish Balay   PetscCall(PetscFree2(dnz, onz)); \
13619371c9d4SSatish Balay   } \
13629371c9d4SSatish Balay   while (0)
1363d0609cedSBarry Smith 
1364edd03b47SJacob Faibussowitsch #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateEnd()", ) MatPreallocateEnd(__VA_ARGS__)
13657c922b88SBarry Smith 
13667b80b807SBarry Smith /* Routines unique to particular data structures */
1367014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *);
1368698d4c6aSKris Buschelman 
1369014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *);
1370014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *);
1371698d4c6aSKris Buschelman 
1372014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]);
1373014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]);
1374014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1375014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1376014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1377ce78bad3SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscCount, PetscBool);
13787b80b807SBarry Smith 
1379a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4
1380a96a251dSBarry Smith 
1381014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1382014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1383014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]);
138419b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt);
1385273d9f13SBarry Smith 
1386014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1387014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1388014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1389014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1390014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1391014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1392014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1393014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]);
1394b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *);
1395252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *);
1396014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]);
1397014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]);
13989230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
13999230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
1400014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *);
1401273d9f13SBarry Smith 
140249a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *);
1403ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt);
1404edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatDenseSetLDA()", ) static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda)
1405d71ae5a4SJacob Faibussowitsch {
14069371c9d4SSatish Balay   return MatDenseSetLDA(A, lda);
14079371c9d4SSatish Balay }
1408014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *);
14091b807ce4Svictorle 
1410621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1411621e819fSSatish Balay 
1412014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat);
1413014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat);
14142e8a6d31SBarry Smith 
1415014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *);
14167cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *);
14177b80b807SBarry Smith /*
14187b80b807SBarry Smith   These routines are not usually accessed directly, rather solving is
141994b7f48cSBarry Smith   done through the KSP and PC interfaces.
14207b80b807SBarry Smith */
14217b80b807SBarry Smith 
142276bdecfbSBarry Smith /*J
14232ef1f0ffSBarry Smith    MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used
14242ef1f0ffSBarry Smith    to reduce fill in sparse factorizations.
1425d9274352SBarry Smith 
1426d9274352SBarry Smith    Level: beginner
1427d9274352SBarry Smith 
14282c7c0729SBarry Smith    Notes:
142916a05f60SBarry Smith    If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one
143016a05f60SBarry Smith    of its own.
14312c7c0729SBarry Smith 
14322ef1f0ffSBarry Smith    There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()`
14332ef1f0ffSBarry Smith 
14342ef1f0ffSBarry Smith    Developer Note:
14352ef1f0ffSBarry Smith    This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning`
14362ef1f0ffSBarry Smith 
14371cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`,
14382ef1f0ffSBarry Smith           `PCFactorSetOrderingType()`
143976bdecfbSBarry Smith J*/
144019fd82e9SBarry Smith typedef const char *MatOrderingType;
14412692d6eeSBarry Smith #define MATORDERINGNATURAL       "natural"
14422692d6eeSBarry Smith #define MATORDERINGND            "nd"
14432692d6eeSBarry Smith #define MATORDERING1WD           "1wd"
14442692d6eeSBarry Smith #define MATORDERINGRCM           "rcm"
14452692d6eeSBarry Smith #define MATORDERINGQMD           "qmd"
14462692d6eeSBarry Smith #define MATORDERINGROWLENGTH     "rowlength"
1447510184a7SJed Brown #define MATORDERINGWBM           "wbm"
1448fc1bef75SJed Brown #define MATORDERINGSPECTRAL      "spectral"
1449312e372aSBarry Smith #define MATORDERINGAMD           "amd"           /* only works if UMFPACK is installed with PETSc */
1450048412efSPablo Brubeck #define MATORDERINGMETISND       "metisnd"       /* only works if METIS is installed with PETSc */
14519bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */
14522c7c0729SBarry Smith #define MATORDERINGEXTERNAL      "external"      /* uses an ordering type internal to the factorization package */
1453b12f92e5SBarry Smith 
145419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrdering(Mat, MatOrderingType, IS *, IS *);
1455140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrderingList(PetscFunctionList *);
1456bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode    MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *));
1457140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList;
1458d4fbbf0eSBarry Smith 
1459013e2dc7SBarry Smith #include "petscmatcoarsen.h"
1460013e2dc7SBarry Smith 
1461014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS);
1462fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *);
1463a2ce50c7SBarry Smith 
14644ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *);
14654ac6704cSBarry Smith 
1466d91e6319SBarry Smith /*S
14672ef1f0ffSBarry Smith    MatFactorShiftType - Type of numeric shift used for factorizations
1468d90ac83dSHong Zhang 
14692ef1f0ffSBarry Smith    Values:
14702ef1f0ffSBarry Smith +  `MAT_SHIFT_NONE`              - do not shift the matrix diagonal entries
14712ef1f0ffSBarry Smith .  `MAT_SHIFT_NONZERO`           - shift the entries to be non-zero
14722ef1f0ffSBarry Smith .  `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite
14732ef1f0ffSBarry Smith -  `MAT_SHIFT_INBLOCKS`          - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ`
1474d90ac83dSHong Zhang 
14752ef1f0ffSBarry Smith    Level: intermediate
14762ef1f0ffSBarry Smith 
14771cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()`
1478d90ac83dSHong Zhang S*/
14799371c9d4SSatish Balay typedef enum {
14809371c9d4SSatish Balay   MAT_SHIFT_NONE,
14819371c9d4SSatish Balay   MAT_SHIFT_NONZERO,
14829371c9d4SSatish Balay   MAT_SHIFT_POSITIVE_DEFINITE,
14839371c9d4SSatish Balay   MAT_SHIFT_INBLOCKS
14849371c9d4SSatish Balay } MatFactorShiftType;
14856a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[];
14865e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[];
1487d90ac83dSHong Zhang 
1488d90ac83dSHong Zhang /*S
1489ec5066bdSBarry Smith     MatFactorError - indicates what type of error was generated in a matrix factorization
14909aa7eafdSHong Zhang 
14912ef1f0ffSBarry Smith     Values:
14922ef1f0ffSBarry Smith +   `MAT_FACTOR_NOERROR`           - there was no error during the factorization
14932ef1f0ffSBarry Smith .   `MAT_FACTOR_STRUCT_ZEROPIVOT`  - there was a missing entry in a diagonal location of the matrix
14942ef1f0ffSBarry Smith .   `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization
14952ef1f0ffSBarry Smith .   `MAT_FACTOR_OUTMEMORY`         - the factorization has run out of memory
14962ef1f0ffSBarry Smith -   `MAT_FACTOR_OTHER`             - some other error has occurred.
14979aa7eafdSHong Zhang 
14982ef1f0ffSBarry Smith     Level: intermediate
149900e125f8SBarry Smith 
15002ef1f0ffSBarry Smith     Note:
15012ef1f0ffSBarry Smith     When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason`
15022ef1f0ffSBarry Smith 
15031cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`,
15042ef1f0ffSBarry Smith           `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason`
15059aa7eafdSHong Zhang S*/
15069371c9d4SSatish Balay typedef enum {
15079371c9d4SSatish Balay   MAT_FACTOR_NOERROR,
15089371c9d4SSatish Balay   MAT_FACTOR_STRUCT_ZEROPIVOT,
15099371c9d4SSatish Balay   MAT_FACTOR_NUMERIC_ZEROPIVOT,
15109371c9d4SSatish Balay   MAT_FACTOR_OUTMEMORY,
15119371c9d4SSatish Balay   MAT_FACTOR_OTHER
15129371c9d4SSatish Balay } MatFactorError;
15139aa7eafdSHong Zhang 
151400e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *);
1515b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat);
15167b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *);
151700e125f8SBarry Smith 
15189aa7eafdSHong Zhang /*S
1519422a814eSBarry Smith    MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization
1520b00f7748SHong Zhang 
1521b00f7748SHong Zhang    Level: developer
1522b00f7748SHong Zhang 
15232ef1f0ffSBarry Smith    Note:
15242ef1f0ffSBarry Smith    You can use `MatFactorInfoInitialize()` to set default values.
1525b00f7748SHong Zhang 
15262ef1f0ffSBarry Smith    Fortran Note:
1527687234bfSJose E. Roman    `MatFactorInfo` is a derived type, use e.g. `matfactorinfo%dt` to access its components.
15282ef1f0ffSBarry Smith 
15291cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`,
15302ef1f0ffSBarry Smith           `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()`
1531b00f7748SHong Zhang S*/
1532b00f7748SHong Zhang typedef struct {
153315e8a5b3SHong Zhang   PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */
153485317021SBarry Smith   PetscReal usedt;
153515e8a5b3SHong Zhang   PetscReal dt;            /* drop tolerance */
1536b00f7748SHong Zhang   PetscReal dtcol;         /* tolerance for pivoting */
153715e8a5b3SHong Zhang   PetscReal dtcount;       /* maximum nonzeros to be allowed per row */
153867e28bfeSBarry Smith   PetscReal fill;          /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */
1539348344bbSBarry Smith   PetscReal levels;        /* ICC/ILU(levels) */
1540ce78bad3SBarry Smith   PetscReal pivotinblocks; /* BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 factorization may be faster if do not pivot */
154115e8a5b3SHong Zhang   PetscReal zeropivot;     /* pivot is called zero if less than this */
1542f4db908eSBarry Smith   PetscReal shifttype;     /* type of shift added to matrix factor to prevent zero pivots */
1543f4db908eSBarry Smith   PetscReal shiftamount;   /* how large the shift is */
1544f82ac72cSJunchao Zhang   PetscBool factoronhost;  /* do factorization on host instead of device (for device matrix types) */
1545f82ac72cSJunchao Zhang   PetscBool solveonhost;   /* do mat solve on host with the factor (for device matrix types) */
154615e8a5b3SHong Zhang } MatFactorInfo;
1547ffa6d0a5SLois Curfman McInnes 
1548014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *);
15499a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *);
15509a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15519a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *);
15529a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *);
15539a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *);
15549a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15559a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15569a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15579a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *);
15589a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *);
15593f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *);
15603f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15613f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *);
1562014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *);
1563014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec);
1564014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec);
1565014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec);
1566014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec);
1567014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec);
1568014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec);
1569014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs);
15707c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat);
15717c2f51b8SStefano Zampini 
15729371c9d4SSatish Balay typedef enum {
15739371c9d4SSatish Balay   MAT_FACTOR_SCHUR_UNFACTORED,
15749371c9d4SSatish Balay   MAT_FACTOR_SCHUR_FACTORED,
15759371c9d4SSatish Balay   MAT_FACTOR_SCHUR_INVERTED
15769371c9d4SSatish Balay } MatFactorSchurStatus;
15778e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS);
15787c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15797c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus);
15805a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat);
15817c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15825a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec);
15835a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec);
15846dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat);
1585bb5a7306SBarry Smith 
15868a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat);
1587d91e6319SBarry Smith /*E
1588d91e6319SBarry Smith    MatSORType - What type of (S)SOR to perform
1589bb1eb677SSatish Balay 
15902ef1f0ffSBarry Smith    Values:
15912ef1f0ffSBarry Smith +  `SOR_FORWARD_SWEEP`         - do a sweep from the first row of the matrix to the last
15922ef1f0ffSBarry Smith .  `SOR_BACKWARD_SWEEP`        - do a sweep from the last row to the first
15932ef1f0ffSBarry Smith .  `SOR_SYMMETRIC_SWEEP`       - do a sweep from the first row to the last and then back to the first
1594af27ebaaSBarry Smith .  `SOR_LOCAL_FORWARD_SWEEP`   - each MPI process does its own forward sweep with no communication
1595af27ebaaSBarry Smith .  `SOR_LOCAL_BACKWARD_SWEEP`  - each MPI process does its own backward sweep with no communication
1596af27ebaaSBarry Smith .  `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI process does its own symmetric sweep with no communication
15972ef1f0ffSBarry Smith .  `SOR_ZERO_INITIAL_GUESS`    - indicates the initial solution is zero so the sweep can avoid unneeded computation
15982ef1f0ffSBarry Smith .  `SOR_EISENSTAT`             - apply the Eisentat application of SOR, see `PCEISENSTAT`
15992ef1f0ffSBarry Smith .  `SOR_APPLY_UPPER`           - multiply by the upper triangular portion of the matrix
16002ef1f0ffSBarry Smith -  `SOR_APPLY_LOWER`           - multiply by the lower triangular portion of the matrix
16012ef1f0ffSBarry Smith 
1602d91e6319SBarry Smith    Level: beginner
1603d91e6319SBarry Smith 
16042ef1f0ffSBarry Smith    Note:
16052ef1f0ffSBarry Smith    These may be bitwise ORd together
1606d9274352SBarry Smith 
16072ef1f0ffSBarry Smith    Developer Note:
16082ef1f0ffSBarry Smith    Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below
1609d91e6319SBarry Smith 
16101cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSOR()`
1611d91e6319SBarry Smith E*/
16129371c9d4SSatish Balay typedef enum {
16139371c9d4SSatish Balay   SOR_FORWARD_SWEEP         = 1,
16149371c9d4SSatish Balay   SOR_BACKWARD_SWEEP        = 2,
16159371c9d4SSatish Balay   SOR_SYMMETRIC_SWEEP       = 3,
16169371c9d4SSatish Balay   SOR_LOCAL_FORWARD_SWEEP   = 4,
16179371c9d4SSatish Balay   SOR_LOCAL_BACKWARD_SWEEP  = 8,
16189371c9d4SSatish Balay   SOR_LOCAL_SYMMETRIC_SWEEP = 12,
16199371c9d4SSatish Balay   SOR_ZERO_INITIAL_GUESS    = 16,
16209371c9d4SSatish Balay   SOR_EISENSTAT             = 32,
16219371c9d4SSatish Balay   SOR_APPLY_UPPER           = 64,
16229371c9d4SSatish Balay   SOR_APPLY_LOWER           = 128
16239371c9d4SSatish Balay } MatSORType;
1624014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
16258ed539a5SBarry Smith 
16267086a01eSPeter Brune /*S
16277086a01eSPeter Brune    MatColoring - Object for managing the coloring of matrices.
16287086a01eSPeter Brune 
16297086a01eSPeter Brune    Level: beginner
16307086a01eSPeter Brune 
1631ec5066bdSBarry Smith    Notes:
163287497f52SBarry Smith    Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
163387497f52SBarry Smith    matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors).
1634ec5066bdSBarry Smith 
163587497f52SBarry Smith    Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This
16362ef1f0ffSBarry Smith    same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices.
1637ec5066bdSBarry Smith 
16381cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`,
16392ef1f0ffSBarry Smith           `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`,
16402ef1f0ffSBarry Smith           `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen`
16417086a01eSPeter Brune S*/
1642d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring;
1643d4db15c4SBarry Smith 
1644d4db15c4SBarry Smith /*J
1645d4db15c4SBarry Smith    MatColoringType - String with the name of a PETSc matrix coloring
1646d9274352SBarry Smith 
1647d9274352SBarry Smith    Level: beginner
1648d9274352SBarry Smith 
16491cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring`
165076bdecfbSBarry Smith J*/
165119fd82e9SBarry Smith typedef const char *MatColoringType;
16525567d71aSPeter Brune #define MATCOLORINGJP      "jp"
1653b9acb617SPeter Brune #define MATCOLORINGPOWER   "power"
16542692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural"
16552692d6eeSBarry Smith #define MATCOLORINGSL      "sl"
16562692d6eeSBarry Smith #define MATCOLORINGLF      "lf"
16572692d6eeSBarry Smith #define MATCOLORINGID      "id"
16588121bdceSPeter Brune #define MATCOLORINGGREEDY  "greedy"
1659b12f92e5SBarry Smith 
16608ac6da0aSPeter Brune /*E
16612ef1f0ffSBarry Smith    MatColoringWeightType - Type of weight scheme used for the coloring algorithm
16628ac6da0aSPeter Brune 
16632ef1f0ffSBarry Smith    Values:
166487497f52SBarry Smith +  `MAT_COLORING_RANDOM`  - Random weights
166587497f52SBarry Smith .  `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering.
166687497f52SBarry Smith -  `MAT_COLORING_LF`      - Last-first weighting.
16678ac6da0aSPeter Brune 
16688ac6da0aSPeter Brune     Level: intermediate
16698ac6da0aSPeter Brune 
16701cc06b55SBarry Smith .seealso: [](ch_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()`
16718ac6da0aSPeter Brune E*/
16729371c9d4SSatish Balay typedef enum {
16739371c9d4SSatish Balay   MAT_COLORING_WEIGHT_RANDOM,
16749371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LEXICAL,
16759371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LF,
16769371c9d4SSatish Balay   MAT_COLORING_WEIGHT_SL
16779371c9d4SSatish Balay } MatColoringWeightType;
16788ac6da0aSPeter Brune 
1679335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *);
1680d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *);
1681335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *);
1682335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer);
1683335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType);
1684335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring);
1685335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt);
1686335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *);
1687335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt);
1688335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *);
1689335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *);
1690335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring));
1691014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *);
16928ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType);
1693c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *);
16948ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm);
1695bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring);
1696edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatColoringTest()", ) static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring)
1697d71ae5a4SJacob Faibussowitsch {
16989371c9d4SSatish Balay   return MatColoringTest(matcoloring, iscoloring);
16999371c9d4SSatish Balay }
1700bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring);
1701639f9d9dSBarry Smith 
1702d9274352SBarry Smith /*S
170387497f52SBarry Smith    MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring
1704639f9d9dSBarry Smith 
1705d9274352SBarry Smith    Level: beginner
1706d9274352SBarry Smith 
1707ec5066bdSBarry Smith    Notes:
170887497f52SBarry Smith    This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()`
1709ec5066bdSBarry Smith 
17102ef1f0ffSBarry Smith    The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object
17112ef1f0ffSBarry Smith 
17121cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()`
1713d9274352SBarry Smith S*/
1714e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring;
1715639f9d9dSBarry Smith 
1716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *);
1717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *);
1718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer);
1719014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *);
1720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **);
1721014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal);
1722014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring);
1723d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *);
1724014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec);
1725edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]);
1726f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring);
1727f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt);
1728bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *);
1729b1683b59SHong Zhang 
1730b1683b59SHong Zhang /*S
1731af27ebaaSBarry Smith    MatTransposeColoring - Object for computing a sparse matrix product $C = A*B^T$ via coloring
1732b1683b59SHong Zhang 
17332ef1f0ffSBarry Smith    Level: developer
1734b1683b59SHong Zhang 
17351cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()`
1736b1683b59SHong Zhang S*/
1737b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring;
1738b1683b59SHong Zhang 
1739014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *);
1740014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat);
1741014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat);
1742014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *);
1743b1683b59SHong Zhang 
1744d9274352SBarry Smith /*S
1745d9274352SBarry Smith    MatPartitioning - Object for managing the partitioning of a matrix or graph
1746d9274352SBarry Smith 
1747d9274352SBarry Smith    Level: beginner
1748d9274352SBarry Smith 
174987497f52SBarry Smith    Note:
175087497f52SBarry Smith    There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations
175187497f52SBarry Smith    via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`)
1752ec5066bdSBarry Smith 
1753b5e6e808SPierre Jolivet    Developer Note:
17542ef1f0ffSBarry Smith    It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed
1755ec5066bdSBarry Smith 
17561cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`,
17572ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
1758d9274352SBarry Smith S*/
175991e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning;
1760d9274352SBarry Smith 
176176bdecfbSBarry Smith /*J
17628f6c3df8SBarry Smith     MatPartitioningType - String with the name of a PETSc matrix partitioning
1763d9274352SBarry Smith 
1764d9274352SBarry Smith    Level: beginner
17650d04baf8SBarry Smith dm
17661cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`,
17672ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
176876bdecfbSBarry Smith J*/
176919fd82e9SBarry Smith typedef const char *MatPartitioningType;
17702692d6eeSBarry Smith #define MATPARTITIONINGCURRENT  "current"
1771aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE  "average"
17722692d6eeSBarry Smith #define MATPARTITIONINGSQUARE   "square"
17732692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis"
17742692d6eeSBarry Smith #define MATPARTITIONINGCHACO    "chaco"
17752692d6eeSBarry Smith #define MATPARTITIONINGPARTY    "party"
177650d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch"
177788d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch"
177871306c60Sjroman 
1779014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *);
178019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType);
1781014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt);
1782014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat);
1783252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt);
1784014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]);
1785014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]);
1786ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool);
1787ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *);
1788014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *);
1789fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *);
1790668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS);
1791f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *);
1792014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *);
1793bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning));
1794014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer);
1795fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]);
1796014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning);
179719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *);
1798ca161407SBarry Smith 
1799ce78bad3SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning);
1800014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning);
1801014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *);
18020752156aSBarry Smith 
18039371c9d4SSatish Balay typedef enum {
18049371c9d4SSatish Balay   MP_CHACO_MULTILEVEL = 1,
18059371c9d4SSatish Balay   MP_CHACO_SPECTRAL   = 2,
18069371c9d4SSatish Balay   MP_CHACO_LINEAR     = 4,
18079371c9d4SSatish Balay   MP_CHACO_RANDOM     = 5,
18089371c9d4SSatish Balay   MP_CHACO_SCATTERED  = 6
18099371c9d4SSatish Balay } MPChacoGlobalType;
18106a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[];
18119371c9d4SSatish Balay typedef enum {
18129371c9d4SSatish Balay   MP_CHACO_KERNIGHAN = 1,
18139371c9d4SSatish Balay   MP_CHACO_NONE      = 2
18149371c9d4SSatish Balay } MPChacoLocalType;
18156a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[];
18169371c9d4SSatish Balay typedef enum {
18179371c9d4SSatish Balay   MP_CHACO_LANCZOS = 0,
18189371c9d4SSatish Balay   MP_CHACO_RQI     = 1
18199371c9d4SSatish Balay } MPChacoEigenType;
18206a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[];
1821b6956c12SJose Roman 
1822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType);
1823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *);
1824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType);
1825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *);
1826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal);
1827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType);
1828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *);
1829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal);
1830014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *);
1831014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt);
1832014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *);
183371306c60Sjroman 
183471306c60Sjroman #define MP_PARTY_OPT "opt"
183571306c60Sjroman #define MP_PARTY_LIN "lin"
183671306c60Sjroman #define MP_PARTY_SCA "sca"
183771306c60Sjroman #define MP_PARTY_RAN "ran"
183871306c60Sjroman #define MP_PARTY_GBF "gbf"
183971306c60Sjroman #define MP_PARTY_GCF "gcf"
184071306c60Sjroman #define MP_PARTY_BUB "bub"
184171306c60Sjroman #define MP_PARTY_DEF "def"
1842014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *);
184371306c60Sjroman #define MP_PARTY_HELPFUL_SETS  "hs"
184471306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl"
184571306c60Sjroman #define MP_PARTY_NONE          "no"
1846014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *);
1847014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal);
1848014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool);
1849014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool);
185071306c60Sjroman 
18519371c9d4SSatish Balay typedef enum {
18529371c9d4SSatish Balay   MP_PTSCOTCH_DEFAULT,
18539371c9d4SSatish Balay   MP_PTSCOTCH_QUALITY,
18549371c9d4SSatish Balay   MP_PTSCOTCH_SPEED,
18559371c9d4SSatish Balay   MP_PTSCOTCH_BALANCE,
18569371c9d4SSatish Balay   MP_PTSCOTCH_SAFETY,
18579371c9d4SSatish Balay   MP_PTSCOTCH_SCALABILITY
18589371c9d4SSatish Balay } MPPTScotchStrategyType;
18596a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[];
1860e0f1cffaSJose Roman 
1861014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal);
1862014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *);
1863014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType);
1864014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *);
186571306c60Sjroman 
1866b43b03e9SMark F. Adams /*
18676294fa2bSFande Kong  * hierarchical partitioning
18686294fa2bSFande Kong  */
18694e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *);
18704e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *);
18714e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt);
18724e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt);
18736294fa2bSFande Kong 
1874014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *);
1875591294e4SBarry Smith 
18760752156aSBarry Smith /*
1877c786d857SStefano Zampini     If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx
1878d4fbbf0eSBarry Smith */
18799371c9d4SSatish Balay typedef enum {
18809371c9d4SSatish Balay   MATOP_SET_VALUES               = 0,
18811c1c02c0SLois Curfman McInnes   MATOP_GET_ROW                  = 1,
18821c1c02c0SLois Curfman McInnes   MATOP_RESTORE_ROW              = 2,
18831c1c02c0SLois Curfman McInnes   MATOP_MULT                     = 3,
18841c1c02c0SLois Curfman McInnes   MATOP_MULT_ADD                 = 4,
18857c922b88SBarry Smith   MATOP_MULT_TRANSPOSE           = 5,
18867c922b88SBarry Smith   MATOP_MULT_TRANSPOSE_ADD       = 6,
18871c1c02c0SLois Curfman McInnes   MATOP_SOLVE                    = 7,
18881c1c02c0SLois Curfman McInnes   MATOP_SOLVE_ADD                = 8,
18897c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE          = 9,
18907c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE_ADD      = 10,
18911c1c02c0SLois Curfman McInnes   MATOP_LUFACTOR                 = 11,
18921c1c02c0SLois Curfman McInnes   MATOP_CHOLESKYFACTOR           = 12,
1893a714c06dSBarry Smith   MATOP_SOR                      = 13,
18941c1c02c0SLois Curfman McInnes   MATOP_TRANSPOSE                = 14,
18951c1c02c0SLois Curfman McInnes   MATOP_GETINFO                  = 15,
18961c1c02c0SLois Curfman McInnes   MATOP_EQUAL                    = 16,
18971c1c02c0SLois Curfman McInnes   MATOP_GET_DIAGONAL             = 17,
18981c1c02c0SLois Curfman McInnes   MATOP_DIAGONAL_SCALE           = 18,
18991c1c02c0SLois Curfman McInnes   MATOP_NORM                     = 19,
19001c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_BEGIN           = 20,
19011c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_END             = 21,
1902d519adbfSMatthew Knepley   MATOP_SET_OPTION               = 22,
1903d519adbfSMatthew Knepley   MATOP_ZERO_ENTRIES             = 23,
1904d519adbfSMatthew Knepley   MATOP_ZERO_ROWS                = 24,
1905d519adbfSMatthew Knepley   MATOP_LUFACTOR_SYMBOLIC        = 25,
1906d519adbfSMatthew Knepley   MATOP_LUFACTOR_NUMERIC         = 26,
1907d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27,
1908d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_NUMERIC  = 28,
1909e5f2d425SStefano Zampini   MATOP_SETUP                    = 29,
1910d519adbfSMatthew Knepley   MATOP_ILUFACTOR_SYMBOLIC       = 30,
1911d519adbfSMatthew Knepley   MATOP_ICCFACTOR_SYMBOLIC       = 31,
1912a5b7ff6bSBarry Smith   MATOP_GET_DIAGONAL_BLOCK       = 32,
1913e5f2d425SStefano Zampini   MATOP_SET_INF                  = 33,
1914d519adbfSMatthew Knepley   MATOP_DUPLICATE                = 34,
1915d519adbfSMatthew Knepley   MATOP_FORWARD_SOLVE            = 35,
1916d519adbfSMatthew Knepley   MATOP_BACKWARD_SOLVE           = 36,
1917d519adbfSMatthew Knepley   MATOP_ILUFACTOR                = 37,
1918d519adbfSMatthew Knepley   MATOP_ICCFACTOR                = 38,
1919d519adbfSMatthew Knepley   MATOP_AXPY                     = 39,
19207dae84e0SHong Zhang   MATOP_CREATE_SUBMATRICES       = 40,
1921d519adbfSMatthew Knepley   MATOP_INCREASE_OVERLAP         = 41,
1922d519adbfSMatthew Knepley   MATOP_GET_VALUES               = 42,
1923d519adbfSMatthew Knepley   MATOP_COPY                     = 43,
1924d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX              = 44,
1925d519adbfSMatthew Knepley   MATOP_SCALE                    = 45,
1926d519adbfSMatthew Knepley   MATOP_SHIFT                    = 46,
192735153367SBarry Smith   MATOP_DIAGONAL_SET             = 47,
19289d39f69dSJed Brown   MATOP_ZERO_ROWS_COLUMNS        = 48,
19299d39f69dSJed Brown   MATOP_SET_RANDOM               = 49,
1930d519adbfSMatthew Knepley   MATOP_GET_ROW_IJ               = 50,
1931d519adbfSMatthew Knepley   MATOP_RESTORE_ROW_IJ           = 51,
1932d519adbfSMatthew Knepley   MATOP_GET_COLUMN_IJ            = 52,
1933d519adbfSMatthew Knepley   MATOP_RESTORE_COLUMN_IJ        = 53,
1934d519adbfSMatthew Knepley   MATOP_FDCOLORING_CREATE        = 54,
1935d519adbfSMatthew Knepley   MATOP_COLORING_PATCH           = 55,
1936d519adbfSMatthew Knepley   MATOP_SET_UNFACTORED           = 56,
1937d519adbfSMatthew Knepley   MATOP_PERMUTE                  = 57,
1938d519adbfSMatthew Knepley   MATOP_SET_VALUES_BLOCKED       = 58,
19397dae84e0SHong Zhang   MATOP_CREATE_SUBMATRIX         = 59,
1940d519adbfSMatthew Knepley   MATOP_DESTROY                  = 60,
1941d519adbfSMatthew Knepley   MATOP_VIEW                     = 61,
1942d519adbfSMatthew Knepley   MATOP_CONVERT_FROM             = 62,
1943e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_63=63 */
19447bab7c10SHong Zhang   MATOP_MATMAT_MULT_SYMBOLIC    = 64,
19457bab7c10SHong Zhang   MATOP_MATMAT_MULT_NUMERIC     = 65,
1946d519adbfSMatthew Knepley   MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66,
1947d519adbfSMatthew Knepley   MATOP_SET_VALUES_LOCAL        = 67,
1948d519adbfSMatthew Knepley   MATOP_ZERO_ROWS_LOCAL         = 68,
1949d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX_ABS         = 69,
1950d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN_ABS         = 70,
1951d519adbfSMatthew Knepley   MATOP_CONVERT                 = 71,
1952e5f2d425SStefano Zampini   MATOP_HAS_OPERATION           = 72,
19539d39f69dSJed Brown   /* MATOP_PLACEHOLDER_73=73, */
1954d519adbfSMatthew Knepley   MATOP_SET_VALUES_ADIFOR = 74,
1955d519adbfSMatthew Knepley   MATOP_FD_COLORING_APPLY = 75,
1956d519adbfSMatthew Knepley   MATOP_SET_FROM_OPTIONS  = 76,
1957e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_77=77, */
1958e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_78=78, */
19599d39f69dSJed Brown   MATOP_FIND_ZERO_DIAGONALS       = 79,
1960d519adbfSMatthew Knepley   MATOP_MULT_MULTIPLE             = 80,
1961d519adbfSMatthew Knepley   MATOP_SOLVE_MULTIPLE            = 81,
1962d519adbfSMatthew Knepley   MATOP_GET_INERTIA               = 82,
1963d519adbfSMatthew Knepley   MATOP_LOAD                      = 83,
1964d519adbfSMatthew Knepley   MATOP_IS_SYMMETRIC              = 84,
1965d519adbfSMatthew Knepley   MATOP_IS_HERMITIAN              = 85,
1966d519adbfSMatthew Knepley   MATOP_IS_STRUCTURALLY_SYMMETRIC = 86,
1967820469bcSHong Zhang   MATOP_SET_VALUES_BLOCKEDLOCAL   = 87,
1968b41ce5d5SBarry Smith   MATOP_CREATE_VECS               = 88,
1969e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_89=89, */
1970d519adbfSMatthew Knepley   MATOP_MAT_MULT_SYMBOLIC = 90,
1971d519adbfSMatthew Knepley   MATOP_MAT_MULT_NUMERIC  = 91,
1972e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_92=92, */
1973d519adbfSMatthew Knepley   MATOP_PTAP_SYMBOLIC = 93,
1974d519adbfSMatthew Knepley   MATOP_PTAP_NUMERIC  = 94,
1975e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_95=95, */
1976bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96,
1977bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_NUMER = 97,
1978e5f2d425SStefano Zampini   MATOP_BIND_TO_CPU              = 98,
19797a3c3d58SStefano Zampini   MATOP_PRODUCTSETFROMOPTIONS    = 99,
19807a3c3d58SStefano Zampini   MATOP_PRODUCTSYMBOLIC          = 100,
19817a3c3d58SStefano Zampini   MATOP_PRODUCTNUMERIC           = 101,
1982d519adbfSMatthew Knepley   MATOP_CONJUGATE                = 102,
1983e5f2d425SStefano Zampini   MATOP_VIEW_NATIVE              = 103,
1984d519adbfSMatthew Knepley   MATOP_SET_VALUES_ROW           = 104,
1985d519adbfSMatthew Knepley   MATOP_REAL_PART                = 105,
1986bda6c4cbSBarry Smith   MATOP_IMAGINARY_PART           = 106,
1987bda6c4cbSBarry Smith   MATOP_GET_ROW_UPPER_TRIANGULAR = 107,
1988bda6c4cbSBarry Smith   MATOP_RESTORE_ROW_UPPER_TRIANG = 108,
1989bda6c4cbSBarry Smith   MATOP_MAT_SOLVE                = 109,
199029eadf9eSStefano Zampini   MATOP_MAT_SOLVE_TRANSPOSE      = 110,
1991d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN              = 111,
19920e8d04f7SBarry Smith   MATOP_GET_COLUMN_VECTOR        = 112,
1993d519adbfSMatthew Knepley   MATOP_MISSING_DIAGONAL         = 113,
19940e8d04f7SBarry Smith   MATOP_GET_SEQ_NONZERO_STRUCTUR = 114,
199589c6957cSBarry Smith   MATOP_CREATE                   = 115,
199689c6957cSBarry Smith   MATOP_GET_GHOSTS               = 116,
19970e8d04f7SBarry Smith   MATOP_GET_LOCAL_SUB_MATRIX     = 117,
19980e8d04f7SBarry Smith   MATOP_RESTORE_LOCALSUB_MATRIX  = 118,
1999eeffb40dSHong Zhang   MATOP_MULT_DIAGONAL_BLOCK      = 119,
20000e8d04f7SBarry Smith   MATOP_HERMITIAN_TRANSPOSE      = 120,
20010e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANSPOSE = 121,
20020e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANS_ADD = 122,
20030e8d04f7SBarry Smith   MATOP_GET_MULTI_PROC_BLOCK     = 123,
20049d39f69dSJed Brown   MATOP_FIND_NONZERO_ROWS        = 124,
20050e8d04f7SBarry Smith   MATOP_GET_COLUMN_NORMS         = 125,
20069d39f69dSJed Brown   MATOP_INVERT_BLOCK_DIAGONAL    = 126,
2007e5f2d425SStefano Zampini   MATOP_INVERT_VBLOCK_DIAGONAL   = 127,
2008b41ce5d5SBarry Smith   MATOP_CREATE_SUB_MATRICES_MPI  = 128,
20092b8ad9a3SHong Zhang   MATOP_SET_VALUES_BATCH         = 129,
2010e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_130=130, */
20110e8d04f7SBarry Smith   MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131,
2012e9b602ebSSatish Balay   MATOP_TRANSPOSE_MAT_MULT_NUMER = 132,
20130e8d04f7SBarry Smith   MATOP_TRANSPOSE_COLORING_CREAT = 133,
20140e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_SPT = 134,
20150e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_DEN = 135,
2016e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_136=136, */
20170e8d04f7SBarry Smith   MATOP_RART_SYMBOLIC         = 137,
20180e8d04f7SBarry Smith   MATOP_RART_NUMERIC          = 138,
2019e09a3074SHong Zhang   MATOP_SET_BLOCK_SIZES       = 139,
2020f9426fe0SMark Adams   MATOP_AYPX                  = 140,
20211919a2e2SJed Brown   MATOP_RESIDUAL              = 141,
20229c8f2541SHong Zhang   MATOP_FDCOLORING_SETUP      = 142,
2023e5f2d425SStefano Zampini   MATOP_FIND_OFFBLOCK_ENTRIES = 143,
20242d033e1fSHong Zhang   MATOP_MPICONCATENATESEQ     = 144,
2025bb01b7b0SPatrick Sanan   MATOP_DESTROYSUBMATRICES    = 145,
20264ac41c6fSJose E. Roman   MATOP_MAT_TRANSPOSE_SOLVE   = 146,
20274ac41c6fSJose E. Roman   MATOP_GET_VALUES_LOCAL      = 147,
20284ac41c6fSJose E. Roman   MATOP_CREATE_GRAPH          = 148,
20294ac41c6fSJose E. Roman   /* MATOP_PLACEHOLDER_149=149, */
20304ac41c6fSJose E. Roman   MATOP_TRANSPOSE_SYMBOLIC  = 150,
20314ac41c6fSJose E. Roman   MATOP_ELIMINATE_ZEROS     = 151,
20322b938fe4SJose E. Roman   MATOP_GET_ROW_SUM_ABS     = 152,
203342ce410bSJunchao Zhang   MATOP_GET_FACTOR          = 153,
2034ce78bad3SBarry Smith   MATOP_GET_BLOCK_DIAGONAL  = 154, /* NOTE: caller of the two op functions owns the returned matrix */
2035ce78bad3SBarry Smith   MATOP_GET_VBLOCK_DIAGONAL = 155  /* and need to destroy it after use. */
2036fae171e0SBarry Smith } MatOperation;
20370c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void));
2038976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void));
2039976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *);
204094342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *);
2041edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatProductClear()", ) static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A)
2042d71ae5a4SJacob Faibussowitsch {
20439371c9d4SSatish Balay   return MatProductClear(A);
20449371c9d4SSatish Balay }
2045014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void));
2046014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void));
2047014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *);
2048d1319cabSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscCtxDestroyFn *);
2049db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType);
2050f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
2051f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
20520c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat);
2053b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType);
2054b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *);
2055112a2221SBarry Smith 
205690ace30eSBarry Smith /*
205790ace30eSBarry Smith    Codes for matrices stored on disk. By default they are
205890ace30eSBarry Smith    stored in a universal format. By changing the format with
20596a9046bcSBarry Smith    PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will
206090ace30eSBarry Smith    be stored in a way natural for the matrix, for example dense matrices
206190ace30eSBarry Smith    would be stored as dense. Matrices stored this way may only be
2062f4403165SShri Abhyankar    read into matrices of the same type.
206390ace30eSBarry Smith */
206490ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1
206590ace30eSBarry Smith 
2066014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal);
206775d48cdbSStefano Zampini 
20688546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType);
206975d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
20704f58015eSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetAllowRepeated(Mat, PetscBool);
20714f58015eSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetAllowRepeated(Mat, PetscBool *);
207275d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool);
2073f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool);
2074014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *);
20753b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *);
2076014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat);
2077e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
20781f4e1ec7SBarry Smith 
2079d9274352SBarry Smith /*S
2080d9274352SBarry Smith    MatNullSpace - Object that removes a null space from a vector, i.e.
2081cb6b9846SMatthew Knepley                   orthogonalizes the vector to a subspace
2082d9274352SBarry Smith 
2083f7a9e4ceSBarry Smith    Level: advanced
2084d9274352SBarry Smith 
20851cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()`
2086d9274352SBarry Smith S*/
208774637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace;
2088d9274352SBarry Smith 
2089014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *);
2090014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *);
2091014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *);
2092d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec);
2093014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *);
20945fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *);
20955fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace);
2096014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace);
2097014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace);
2098014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *);
20994849c82aSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNullSpaces(PetscInt, Mat[], MatNullSpace *[]);
21004849c82aSBarry Smith PETSC_EXTERN PetscErrorCode MatRestoreNullSpaces(PetscInt, Mat[], MatNullSpace *[]);
2101014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *);
2102014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer);
2103014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **);
2104014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *);
210574637425SBarry Smith 
2106014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS);
2107014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal);
2108014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *);
21093f1d51d7SBarry Smith 
2110014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *);
2111014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *);
2112014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *);
2113c4f061fbSSatish Balay 
21140bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *);
21150bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *);
21160bacdadaSStefano Zampini 
2117edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperator()", ) static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B)
2118d71ae5a4SJacob Faibussowitsch {
2119f22e26b7SPierre Jolivet   return MatComputeOperator(A, PETSC_NULLPTR, B);
21209371c9d4SSatish Balay }
2121edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperatorTranspose()", ) static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B)
2122d71ae5a4SJacob Faibussowitsch {
2123f22e26b7SPierre Jolivet   return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B);
21249371c9d4SSatish Balay }
2125b0a32e0cSBarry Smith 
212649bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *);
212749bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *);
2128a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **);
2129a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2130a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **);
2131a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **);
2132a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **);
2133a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2134a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **);
2135a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **);
2136dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat);
2137dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]);
2138dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]);
2139910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *);
214049bd79ccSDebojyoti Ghosh 
2141014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec);
214204f1ad80SBarry Smith 
21434bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDInitializePackage(void);
21444bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDFinalizePackage(void);
21454bf303faSJacob Faibussowitsch 
2146014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2147014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec);
2148014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *);
2149014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *));
2150014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec));
2151014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt);
2152014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat);
2153014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal);
2154014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt);
2155014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *);
2156014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]);
2157014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *);
2158014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *);
2159e884886fSBarry Smith 
21606370053bSBarry Smith /*S
21616370053bSBarry Smith     MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free
21626370053bSBarry Smith               Jacobian vector products
2163e884886fSBarry Smith 
21642ef1f0ffSBarry Smith     Level: developer
21652ef1f0ffSBarry Smith 
216695452b02SPatrick Sanan     Notes:
216787497f52SBarry Smith     `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure
21686370053bSBarry Smith 
21692ef1f0ffSBarry Smith      MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure
21706370053bSBarry Smith 
21712ef1f0ffSBarry Smith     This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator`
21726370053bSBarry Smith 
21731cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`,
21742ef1f0ffSBarry Smith           `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator`
21756370053bSBarry Smith S*/
2176e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD;
2177e884886fSBarry Smith 
217876bdecfbSBarry Smith /*J
21792ef1f0ffSBarry Smith    MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function
2180e884886fSBarry Smith 
218116a05f60SBarry Smith    Values:
2182af27ebaaSBarry Smith +   `MATMFFD_DS` - an algorithm described by Dennis and Schnabel {cite}`dennis:83`
2183af27ebaaSBarry Smith -   `MATMFFD_WP` - the Walker-Pernice {cite}`pw98` strategy.
218416a05f60SBarry Smith 
2185e884886fSBarry Smith    Level: beginner
2186e884886fSBarry Smith 
21871cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()`
218876bdecfbSBarry Smith J*/
218919fd82e9SBarry Smith typedef const char *MatMFFDType;
2190e884886fSBarry Smith #define MATMFFD_DS "ds"
2191e884886fSBarry Smith #define MATMFFD_WP "wp"
2192e884886fSBarry Smith 
219319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType);
2194bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD));
2195e884886fSBarry Smith 
2196014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal);
2197014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool);
2198e884886fSBarry Smith 
219961ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType);
220061ab5df0SBarry Smith 
2201014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *);
2202014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *);
22037dbadf16SMatthew Knepley 
220453022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS
22058434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscScalar(MatH2OpusKernelFn)(PetscInt, PetscReal[], PetscReal[], void *);
22068434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatH2OpusKernelFn *MatH2OpusKernel;
2207659ebe53SBarry Smith 
22088434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernelFn *, void *, PetscReal, PetscInt, PetscInt, Mat *);
220953022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *);
221053022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal);
221153022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat);
221253022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal);
221353022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool);
221453022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *);
221553022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *);
221653022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *);
2217300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar);
2218a0d2e7d8SStefano Zampini #endif
2219a0d2e7d8SStefano Zampini 
2220c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL
22218434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode(MatHtoolKernelFn)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *);
22228434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatHtoolKernelFn *MatHtoolKernel;
2223659ebe53SBarry Smith 
22248434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernelFn *, void *, Mat *);
22258434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernelFn *, void *);
222698e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *);
222798e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *);
222898e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool);
22292ef1f0ffSBarry Smith 
2230c7a4214aSPierre Jolivet /*E
223187497f52SBarry Smith    MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL`
2232c7a4214aSPierre Jolivet 
2233c7a4214aSPierre Jolivet    Values:
223487497f52SBarry Smith +  `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation
223587497f52SBarry Smith .  `MAT_HTOOL_COMPRESSOR_FULL_ACA`                 - full adaptive cross approximation
223687497f52SBarry Smith -  `MAT_HTOOL_COMPRESSOR_SVD`                      - singular value decomposition
2237c7a4214aSPierre Jolivet 
223816a05f60SBarry Smith    Level: intermediate
223916a05f60SBarry Smith 
22401cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType`
2241c7a4214aSPierre Jolivet E*/
22429371c9d4SSatish Balay typedef enum {
22439371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA,
22449371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_FULL_ACA,
22459371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SVD
22469371c9d4SSatish Balay } MatHtoolCompressorType;
22472ef1f0ffSBarry Smith 
224898e73e17SPierre Jolivet /*E
224987497f52SBarry Smith    MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL`
225098e73e17SPierre Jolivet 
225198e73e17SPierre Jolivet    Values:
225287497f52SBarry Smith +  `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default)    - axis computed via principle component analysis, split uniformly
225387497f52SBarry Smith .  `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC`            - axis computed via principle component analysis, split barycentrically
225487497f52SBarry Smith .  `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR`   - axis along the largest extent of the bounding box, split uniformly
225587497f52SBarry Smith -  `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically
225698e73e17SPierre Jolivet 
225716a05f60SBarry Smith    Level: intermediate
225816a05f60SBarry Smith 
22592ef1f0ffSBarry Smith    Note:
22602ef1f0ffSBarry Smith    Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types
226198e73e17SPierre Jolivet 
22621cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType`
226398e73e17SPierre Jolivet E*/
22649371c9d4SSatish Balay typedef enum {
22659371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_REGULAR,
22669371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC,
22679371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR,
22689371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC
22699371c9d4SSatish Balay } MatHtoolClusteringType;
2270c7a4214aSPierre Jolivet #endif
2271c7a4214aSPierre Jolivet 
227297969023SHong Zhang #ifdef PETSC_HAVE_MUMPS
2273014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt);
2274bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *);
2275b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal);
2276bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *);
2277bc6112feSHong Zhang 
2278ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *);
2279ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *);
2280ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *);
2281ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *);
22825c0bae8cSAshish Patel PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **);
228389a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat);
22840e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat);
228597969023SHong Zhang #endif
228623a5497aSJed Brown 
2287b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO
2288d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt);
2289b500a6b7SJose David Bermeol #endif
2290b500a6b7SJose David Bermeol 
2291d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO
2292d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt);
2293d305a81bSVasiliy Kozyrev #endif
2294d305a81bSVasiliy Kozyrev 
2295d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU
2296014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal);
2297d954db57SHong Zhang #endif
2298d954db57SHong Zhang 
2299fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST
2300fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *);
2301fb785984SHong Zhang #endif
2302fb785984SHong Zhang 
2303575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK
2304542aee0fSPieter Ghysels /*E
230529e0a805SPieter Ghysels     MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK`
2306542aee0fSPieter Ghysels 
23072ef1f0ffSBarry Smith     Values:
23082ef1f0ffSBarry Smith +  `MAT_STRUMPACK_NATURAL`   - use the current ordering
23092ef1f0ffSBarry Smith .  `MAT_STRUMPACK_METIS`     - use MeTis to compute an ordering
23102ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PARMETIS`  - use ParMeTis to compute an ordering
23112ef1f0ffSBarry Smith .  `MAT_STRUMPACK_SCOTCH`    - use Scotch to compute an ordering
23122ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PTSCOTCH`  - use parallel Scotch to compute an ordering
231329e0a805SPieter Ghysels .  `MAT_STRUMPACK_RCM`       - use an RCM ordering
231429e0a805SPieter Ghysels .  `MAT_STRUMPACK_GEOMETRIC` - use a geometric ordering (needs mesh info from user)
231529e0a805SPieter Ghysels .  `MAT_STRUMPACK_AMD`       - approximate minimum degree
231629e0a805SPieter Ghysels .  `MAT_STRUMPACK_MMD`       - multiple minimum degree
231729e0a805SPieter Ghysels .  `MAT_STRUMPACK_AND`       - approximate nested dissection
231829e0a805SPieter Ghysels .  `MAT_STRUMPACK_MLF`       - minimum local fill
231929e0a805SPieter Ghysels -  `MAT_STRUMPACK_SPECTRAL`  - spectral nested dissection
23202ef1f0ffSBarry Smith 
232116a05f60SBarry Smith     Level: intermediate
232216a05f60SBarry Smith 
23232ef1f0ffSBarry Smith     Developer Note:
23242ef1f0ffSBarry Smith     Should be called `MatSTRUMPACKReorderingType`
23252ef1f0ffSBarry Smith 
232629e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetReordering()`
2327542aee0fSPieter Ghysels E*/
23289371c9d4SSatish Balay typedef enum {
232929e0a805SPieter Ghysels   MAT_STRUMPACK_NATURAL,
233029e0a805SPieter Ghysels   MAT_STRUMPACK_METIS,
233129e0a805SPieter Ghysels   MAT_STRUMPACK_PARMETIS,
233229e0a805SPieter Ghysels   MAT_STRUMPACK_SCOTCH,
233329e0a805SPieter Ghysels   MAT_STRUMPACK_PTSCOTCH,
233429e0a805SPieter Ghysels   MAT_STRUMPACK_RCM,
233529e0a805SPieter Ghysels   MAT_STRUMPACK_GEOMETRIC,
233629e0a805SPieter Ghysels   MAT_STRUMPACK_AMD,
233729e0a805SPieter Ghysels   MAT_STRUMPACK_MMD,
233829e0a805SPieter Ghysels   MAT_STRUMPACK_AND,
233929e0a805SPieter Ghysels   MAT_STRUMPACK_MLF,
234029e0a805SPieter Ghysels   MAT_STRUMPACK_SPECTRAL
23419371c9d4SSatish Balay } MatSTRUMPACKReordering;
23422ef1f0ffSBarry Smith 
234334f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering);
234429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetReordering(Mat, MatSTRUMPACKReordering *);
234529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricNxyz(Mat, PetscInt, PetscInt, PetscInt);
234629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricComponents(Mat, PetscInt);
234729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricWidth(Mat, PetscInt);
2348575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool);
234929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetColPerm(Mat, PetscBool *);
235029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGPU(Mat, PetscBool);
235129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetGPU(Mat, PetscBool *);
235229e0a805SPieter Ghysels 
235329e0a805SPieter Ghysels /*E
235429e0a805SPieter Ghysels     MatSTRUMPACKCompressionType - Compression used in the approximate sparse factorization solver `MATSOLVERSTRUMPACK`
235529e0a805SPieter Ghysels 
235629e0a805SPieter Ghysels     Values:
235729e0a805SPieter Ghysels +  `MAT_STRUMPACK_COMPRESSION_TYPE_NONE`          - no compression, direct solver
235829e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_HSS`           - hierarchically semi-separable
235929e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_BLR`           - block low rank
236029e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_HODLR`         - hierarchically off-diagonal low rank (requires ButterfyPACK support, configure with --download-butterflypack)
236129e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR`     - hybrid of BLR and HODLR (requires ButterfyPACK support, configure with --download-butterflypack)
236229e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR` - hybrid of lossy (ZFP), BLR and HODLR (requires ButterfyPACK and ZFP support, configure with --download-butterflypack --download-zfp)
236329e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS`      - lossless compression (requires ZFP support, configure with --download-zfp)
236429e0a805SPieter Ghysels -  `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY`         - lossy compression (requires ZFP support, configure with --download-zfp)
236529e0a805SPieter Ghysels 
236629e0a805SPieter Ghysels     Level: intermediate
236729e0a805SPieter Ghysels 
236829e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetCompression()`
236929e0a805SPieter Ghysels E*/
237029e0a805SPieter Ghysels typedef enum {
237129e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_NONE,
237229e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_HSS,
237329e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_BLR,
237429e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_HODLR,
237529e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR,
237629e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR,
237729e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS,
237829e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY
237929e0a805SPieter Ghysels } MatSTRUMPACKCompressionType;
238029e0a805SPieter Ghysels 
238129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompression(Mat, MatSTRUMPACKCompressionType);
238229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompression(Mat, MatSTRUMPACKCompressionType *);
238329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompRelTol(Mat, PetscReal);
238429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompRelTol(Mat, PetscReal *);
238529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompAbsTol(Mat, PetscReal);
238629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompAbsTol(Mat, PetscReal *);
238729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompMinSepSize(Mat, PetscInt);
238829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompMinSepSize(Mat, PetscInt *);
238929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLeafSize(Mat, PetscInt);
239029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLeafSize(Mat, PetscInt *);
239129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLossyPrecision(Mat, PetscInt);
239229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLossyPrecision(Mat, PetscInt *);
239329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompButterflyLevels(Mat, PetscInt);
239429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompButterflyLevels(Mat, PetscInt *);
2395575704cbSPieter Ghysels #endif
2396575704cbSPieter Ghysels 
2397b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool);
23982216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *);
2399edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 13, 0, "MatBindToCPU()", ) static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg)
2400d71ae5a4SJacob Faibussowitsch {
24019371c9d4SSatish Balay   return MatBindToCPU(A, flg);
24029371c9d4SSatish Balay }
240365a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool);
2404e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *);
2405e7e92044SBarry Smith 
2406aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA
24073f9c0db1SPaul Mullowney /*E
24082ef1f0ffSBarry Smith     MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU)
24092692e278SPaul Mullowney     matrices.
2410e057df02SPaul Mullowney 
24112ef1f0ffSBarry Smith     Values:
241287497f52SBarry Smith +   `MAT_CUSPARSE_CSR` - Compressed Sparse Row
241387497f52SBarry Smith .   `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later).
241487497f52SBarry Smith -   `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later).
2415e057df02SPaul Mullowney 
2416e057df02SPaul Mullowney     Level: intermediate
2417e057df02SPaul Mullowney 
24181cc06b55SBarry Smith .seealso: [](ch_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation`
2419e057df02SPaul Mullowney E*/
2420e057df02SPaul Mullowney 
24219371c9d4SSatish Balay typedef enum {
24229371c9d4SSatish Balay   MAT_CUSPARSE_CSR,
24239371c9d4SSatish Balay   MAT_CUSPARSE_ELL,
24249371c9d4SSatish Balay   MAT_CUSPARSE_HYB
24259371c9d4SSatish Balay } MatCUSPARSEStorageFormat;
2426e057df02SPaul Mullowney 
2427e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */
2428e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[];
2429e057df02SPaul Mullowney 
24303f9c0db1SPaul Mullowney /*E
24312ef1f0ffSBarry Smith     MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU)
24322692e278SPaul Mullowney     matrices whose operation should use a particular storage format.
2433e057df02SPaul Mullowney 
24342ef1f0ffSBarry Smith     Values:
24354cf0e950SBarry Smith +   `MAT_CUSPARSE_MULT_DIAG`    - sets the storage format for the diagonal matrix in the parallel `MatMult()`
24364cf0e950SBarry Smith .   `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()`
24374cf0e950SBarry Smith .   `MAT_CUSPARSE_MULT`         - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()`
24382ef1f0ffSBarry Smith -   `MAT_CUSPARSE_ALL`          - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices
2439e057df02SPaul Mullowney 
2440e057df02SPaul Mullowney     Level: intermediate
2441e057df02SPaul Mullowney 
24421cc06b55SBarry Smith .seealso: [](ch_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat`
2443e057df02SPaul Mullowney E*/
24449371c9d4SSatish Balay typedef enum {
24459371c9d4SSatish Balay   MAT_CUSPARSE_MULT_DIAG,
24469371c9d4SSatish Balay   MAT_CUSPARSE_MULT_OFFDIAG,
24479371c9d4SSatish Balay   MAT_CUSPARSE_MULT,
24489371c9d4SSatish Balay   MAT_CUSPARSE_ALL
24499371c9d4SSatish Balay } MatCUSPARSEFormatOperation;
2450e057df02SPaul Mullowney 
245110e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
245210e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2453e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat);
2454365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool);
24555f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
24565f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
24575f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **);
24585f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **);
24595f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **);
24605f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **);
24615f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **);
24625f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **);
2463637a0070SStefano Zampini 
2464637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
2465637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
2466637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **);
2467637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **);
2468637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **);
2469637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **);
2470637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **);
2471637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **);
2472637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *);
2473d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *);
2474637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat);
24753d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *);
24762d1451d4SHong Zhang 
24772d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
24782d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
24799ae82921SPaul Mullowney #endif
24809ae82921SPaul Mullowney 
248147d993e7Ssuyashtn #ifdef PETSC_HAVE_HIP
248247d993e7Ssuyashtn /*E
24832ef1f0ffSBarry Smith     MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU)
248447d993e7Ssuyashtn     matrices.
248547d993e7Ssuyashtn 
24862ef1f0ffSBarry Smith     Values:
24872ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_CSR` - Compressed Sparse Row
24882ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_ELL` - Ellpack
24892ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format
249047d993e7Ssuyashtn 
249116a05f60SBarry Smith     Level: intermediate
249216a05f60SBarry Smith 
24931cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation`
249447d993e7Ssuyashtn E*/
249547d993e7Ssuyashtn 
249647d993e7Ssuyashtn typedef enum {
249747d993e7Ssuyashtn   MAT_HIPSPARSE_CSR,
249847d993e7Ssuyashtn   MAT_HIPSPARSE_ELL,
249947d993e7Ssuyashtn   MAT_HIPSPARSE_HYB
250047d993e7Ssuyashtn } MatHIPSPARSEStorageFormat;
250147d993e7Ssuyashtn 
250247d993e7Ssuyashtn /* these will be strings associated with enumerated type defined above */
250347d993e7Ssuyashtn PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[];
250447d993e7Ssuyashtn 
250547d993e7Ssuyashtn /*E
25062ef1f0ffSBarry Smith     MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU)
250747d993e7Ssuyashtn     matrices whose operation should use a particular storage format.
250847d993e7Ssuyashtn 
25092ef1f0ffSBarry Smith     Values:
25102ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_MULT_DIAG`    - sets the storage format for the diagonal matrix in the parallel `MatMult()`
25114cf0e950SBarry Smith .   `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()`
25122ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_MULT`         - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()`
25132ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_ALL`          - sets the storage format for all HIPSPARSE (GPU) matrices
25142ef1f0ffSBarry Smith 
251516a05f60SBarry Smith     Level: intermediate
251616a05f60SBarry Smith 
25171cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat`
251847d993e7Ssuyashtn E*/
251947d993e7Ssuyashtn typedef enum {
252047d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_DIAG,
252147d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_OFFDIAG,
252247d993e7Ssuyashtn   MAT_HIPSPARSE_MULT,
252347d993e7Ssuyashtn   MAT_HIPSPARSE_ALL
252447d993e7Ssuyashtn } MatHIPSPARSEFormatOperation;
252547d993e7Ssuyashtn 
252647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
252747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
252847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat);
252947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool);
253047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
253147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
253247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **);
253347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **);
253447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **);
253547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **);
253647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **);
253747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **);
253847d993e7Ssuyashtn 
253947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
254047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
254147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **);
254247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **);
254347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **);
254447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **);
254547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **);
254647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **);
254747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *);
254847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *);
254947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat);
25503d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *);
2551773bf0f6SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2552773bf0f6SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
255347d993e7Ssuyashtn #endif
255447d993e7Ssuyashtn 
2555d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL)
2556d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2557d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2558d67ff14aSKarl Rupp #endif
2559d67ff14aSKarl Rupp 
25604bf303faSJacob Faibussowitsch #if PetscDefined(HAVE_KOKKOS)
25614bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
25624bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
25634bf303faSJacob Faibussowitsch #endif
25644bf303faSJacob Faibussowitsch 
256554efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW)
2566014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec);
2567014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec);
25682a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *);
256954efbe56SHong Zhang #endif
257054efbe56SHong Zhang 
2571d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
2572d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2573d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt);
2574d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *);
2575d24d4204SJose E. Roman #endif
2576d24d4204SJose E. Roman 
2577014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *);
2578014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *);
2579014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]);
2580014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]);
2581014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***);
2582014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *);
258319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType);
2584014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]);
2585014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat);
2586d8588912SDave May 
25872ce66baaSPierre Jolivet PETSC_EXTERN PetscErrorCode MatFilter(Mat, PetscReal, PetscBool, PetscBool);
25882ce66baaSPierre Jolivet PETSC_DEPRECATED_FUNCTION(3, 20, 0, "MatFilter()", ) static inline PetscErrorCode MatChop(Mat A, PetscReal tol)
25892ce66baaSPierre Jolivet {
25902ce66baaSPierre Jolivet   return MatFilter(A, tol, PETSC_FALSE, PETSC_FALSE);
25912ce66baaSPierre Jolivet }
2592e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *);
25934325cce7SMatthew G Knepley 
2594b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **);
259553dd7562SDmitry Karpeev 
2596c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat);
2597c094ef40SMatthew G. Knepley 
259802218ef1SBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderMerge(Mat, Mat *);
2599539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *);
26001a2c6b5cSJunchao Zhang 
26017ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *);
260272833a62Smarkadams4 
2603e02fb3cdSMark Adams PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, PetscInt, PetscInt[], Mat *);
260458c11ad4SPierre Jolivet PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat, PetscBool);
2605ad6ad4e1SHansol  Suh 
2606d16ceb75SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *);
26073444e80cSBarry Smith 
26083444e80cSBarry Smith PETSC_EXTERN PetscErrorCode MatSetHPL(Mat, int);
26093444e80cSBarry Smith #define PETSCBMHPL "hpl"
2610ce78bad3SBarry Smith 
2611ce78bad3SBarry Smith PETSC_EXTERN PetscErrorCode MatDFischer(Mat, Vec, Vec, Vec, Vec, Vec, Vec, Vec, Vec);
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