12eac72dbSBarry Smith /* 22eac72dbSBarry Smith Include file for the matrix component of PETSc 32eac72dbSBarry Smith */ 4a4963045SJacob Faibussowitsch #pragma once 5ac09b921SBarry Smith 62c8e378dSBarry Smith #include <petscvec.h> 72eac72dbSBarry Smith 8ac09b921SBarry Smith /* SUBMANSEC = Mat */ 9ac09b921SBarry Smith 10d9274352SBarry Smith /*S 118f6c3df8SBarry Smith Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without 12af27ebaaSBarry Smith an explicit sparse representation (such as matrix-free operators). Also used to hold representations of graphs 13af27ebaaSBarry Smith for graph operations such as coloring, `MatColoringCreate()` 142eac72dbSBarry Smith 15d91e6319SBarry Smith Level: beginner 16d91e6319SBarry Smith 172ef1f0ffSBarry Smith Note: 181cc06b55SBarry Smith See [](doc_matrix), [](ch_matrices) and `MatType` for available matrix types 192ef1f0ffSBarry Smith 201cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()` 21d9274352SBarry Smith S*/ 22d9274352SBarry Smith typedef struct _p_Mat *Mat; 23d9274352SBarry Smith 2476bdecfbSBarry Smith /*J 250b4b7b1cSBarry Smith MatType - String with the name of a PETSc matrix type. These are all the matrix formats that PETSc provides. 26d9274352SBarry Smith 27d9274352SBarry Smith Level: beginner 28d9274352SBarry Smith 290b4b7b1cSBarry Smith Notes: 302ef1f0ffSBarry Smith [](doc_matrix) for a table of available matrix types 312ef1f0ffSBarry Smith 320b4b7b1cSBarry Smith Use `MatSetType()` or the options database keys `-mat_type` or `dm_mat_type` to set the matrix format to use for a given `Mat` 330b4b7b1cSBarry Smith 341cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()` 3576bdecfbSBarry Smith J*/ 3619fd82e9SBarry Smith typedef const char *MatType; 37273d9f13SBarry Smith #define MATSAME "same" 385a11e1b2SBarry Smith #define MATMAIJ "maij" 39273d9f13SBarry Smith #define MATSEQMAIJ "seqmaij" 40273d9f13SBarry Smith #define MATMPIMAIJ "mpimaij" 4149bd79ccSDebojyoti Ghosh #define MATKAIJ "kaij" 4249bd79ccSDebojyoti Ghosh #define MATSEQKAIJ "seqkaij" 4349bd79ccSDebojyoti Ghosh #define MATMPIKAIJ "mpikaij" 44273d9f13SBarry Smith #define MATIS "is" 455a11e1b2SBarry Smith #define MATAIJ "aij" 46273d9f13SBarry Smith #define MATSEQAIJ "seqaij" 47273d9f13SBarry Smith #define MATMPIAIJ "mpiaij" 485a11e1b2SBarry Smith #define MATAIJCRL "aijcrl" 495a11e1b2SBarry Smith #define MATSEQAIJCRL "seqaijcrl" 505a11e1b2SBarry Smith #define MATMPIAIJCRL "mpiaijcrl" 519ae82921SPaul Mullowney #define MATAIJCUSPARSE "aijcusparse" 529ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE "seqaijcusparse" 539ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE "mpiaijcusparse" 5447d993e7Ssuyashtn #define MATAIJHIPSPARSE "aijhipsparse" 5547d993e7Ssuyashtn #define MATSEQAIJHIPSPARSE "seqaijhipsparse" 5647d993e7Ssuyashtn #define MATMPIAIJHIPSPARSE "mpiaijhipsparse" 578c3ff71bSJunchao Zhang #define MATAIJKOKKOS "aijkokkos" 588c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS "seqaijkokkos" 598c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS "mpiaijkokkos" 60d67ff14aSKarl Rupp #define MATAIJVIENNACL "aijviennacl" 61d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL "seqaijviennacl" 62d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL "mpiaijviennacl" 635a11e1b2SBarry Smith #define MATAIJPERM "aijperm" 645a11e1b2SBarry Smith #define MATSEQAIJPERM "seqaijperm" 655a11e1b2SBarry Smith #define MATMPIAIJPERM "mpiaijperm" 664dfdc2d9SRichard Tran Mills #define MATAIJSELL "aijsell" 674dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL "seqaijsell" 684dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL "mpiaijsell" 694a2a386eSRichard Tran Mills #define MATAIJMKL "aijmkl" 704a2a386eSRichard Tran Mills #define MATSEQAIJMKL "seqaijmkl" 714a2a386eSRichard Tran Mills #define MATMPIAIJMKL "mpiaijmkl" 72b5b72c8aSIrina Sokolova #define MATBAIJMKL "baijmkl" 73b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL "seqbaijmkl" 74b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL "mpibaijmkl" 75273d9f13SBarry Smith #define MATSHELL "shell" 76c1fff1c6SRichard Tran Mills #define MATCENTERING "centering" 775a11e1b2SBarry Smith #define MATDENSE "dense" 78637a0070SStefano Zampini #define MATDENSECUDA "densecuda" 7947d993e7Ssuyashtn #define MATDENSEHIP "densehip" 80209238afSKris Buschelman #define MATSEQDENSE "seqdense" 81bfc799aaSStefano Zampini #define MATSEQDENSECUDA "seqdensecuda" 8247d993e7Ssuyashtn #define MATSEQDENSEHIP "seqdensehip" 83273d9f13SBarry Smith #define MATMPIDENSE "mpidense" 84637a0070SStefano Zampini #define MATMPIDENSECUDA "mpidensecuda" 8547d993e7Ssuyashtn #define MATMPIDENSEHIP "mpidensehip" 86db31f6deSJed Brown #define MATELEMENTAL "elemental" 87d24d4204SJose E. Roman #define MATSCALAPACK "scalapack" 885a11e1b2SBarry Smith #define MATBAIJ "baij" 89273d9f13SBarry Smith #define MATSEQBAIJ "seqbaij" 90273d9f13SBarry Smith #define MATMPIBAIJ "mpibaij" 91273d9f13SBarry Smith #define MATMPIADJ "mpiadj" 925a11e1b2SBarry Smith #define MATSBAIJ "sbaij" 93273d9f13SBarry Smith #define MATSEQSBAIJ "seqsbaij" 94273d9f13SBarry Smith #define MATMPISBAIJ "mpisbaij" 95cebc7f6cSBarry Smith #define MATMFFD "mffd" 96c8a8475eSBarry Smith #define MATNORMAL "normal" 97c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN "normalh" 98ab92ecdeSBarry Smith #define MATLRC "lrc" 992a6744ebSBarry Smith #define MATSCATTER "scatter" 100421e10b8SBarry Smith #define MATBLOCKMAT "blockmat" 101793850ffSBarry Smith #define MATCOMPOSITE "composite" 1021f8c7532SHong Zhang #define MATFFT "fft" 1031f8c7532SHong Zhang #define MATFFTW "fftw" 104e133240eSMatthew G Knepley #define MATSEQCUFFT "seqcufft" 10547d993e7Ssuyashtn #define MATSEQHIPFFT "seqhipfft" 106edd03b47SJacob Faibussowitsch #define MATTRANSPOSEMAT PETSC_DEPRECATED_MACRO(3, 18, 0, "MATTRANSPOSEVIRTUAL", ) "transpose" 107013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL "transpose" 108013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose" 10972ca8751SBarry Smith #define MATSCHURCOMPLEMENT "schurcomplement" 1101d6018f0SLisandro Dalcin #define MATPYTHON "python" 11163c07aadSStefano Zampini #define MATHYPRE "hypre" 112f91d8e95SBarry Smith #define MATHYPRESTRUCT "hyprestruct" 113a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT "hypresstruct" 114ee1cef2cSJed Brown #define MATSUBMATRIX "submatrix" 1152c0dbf93SJed Brown #define MATLOCALREF "localref" 116d8588912SDave May #define MATNEST "nest" 117c094ef40SMatthew G. Knepley #define MATPREALLOCATOR "preallocator" 118d4002b98SHong Zhang #define MATSELL "sell" 119d4002b98SHong Zhang #define MATSEQSELL "seqsell" 120d4002b98SHong Zhang #define MATMPISELL "mpisell" 1212d1451d4SHong Zhang #define MATSELLCUDA "sellcuda" 1222d1451d4SHong Zhang #define MATSEQSELLCUDA "seqsellcuda" 1232d1451d4SHong Zhang #define MATMPISELLCUDA "mpisellcuda" 124773bf0f6SHong Zhang #define MATSELLHIP "sellhip" 125773bf0f6SHong Zhang #define MATSEQSELLHIP "seqsellhip" 126773bf0f6SHong Zhang #define MATMPISELLHIP "mpisellhip" 127a3b2e22bSHong Zhang #define MATDUMMY "dummy" 128cd929ea3SAlp Dener #define MATLMVM "lmvm" 12978e4361aSAlp Dener #define MATLMVMDFP "lmvmdfp" 130bbb72809SHansol Suh #define MATLMVMDDFP "lmvmddfp" 13178e4361aSAlp Dener #define MATLMVMBFGS "lmvmbfgs" 132bbb72809SHansol Suh #define MATLMVMDBFGS "lmvmdbfgs" 133bbb72809SHansol Suh #define MATLMVMDQN "lmvmdqn" 13478e4361aSAlp Dener #define MATLMVMSR1 "lmvmsr1" 135864588a7SAlp Dener #define MATLMVMBROYDEN "lmvmbroyden" 136864588a7SAlp Dener #define MATLMVMBADBROYDEN "lmvmbadbroyden" 137864588a7SAlp Dener #define MATLMVMSYMBROYDEN "lmvmsymbroyden" 138864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN "lmvmsymbadbroyden" 139864588a7SAlp Dener #define MATLMVMDIAGBROYDEN "lmvmdiagbroyden" 1403423f386SBarry Smith #define MATCONSTANTDIAGONAL "constantdiagonal" 141345a4b08SToby Isaac #define MATDIAGONAL "diagonal" 142c7a4214aSPierre Jolivet #define MATHTOOL "htool" 14353022affSStefano Zampini #define MATH2OPUS "h2opus" 144773941d6SBarry Smith 14576bdecfbSBarry Smith /*J 146af27ebaaSBarry Smith MatSolverType - String with the name of a PETSc factorization-based matrix solver type. 1479989ab13SBarry Smith 148c2b89b5dSBarry Smith For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc 1499989ab13SBarry Smith 1509989ab13SBarry Smith Level: beginner 1519989ab13SBarry Smith 1522ef1f0ffSBarry Smith Note: 15316a05f60SBarry Smith `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as 15416a05f60SBarry Smith a ./configure option to install them 155c7ccbb75SBarry Smith 1561cc06b55SBarry Smith .seealso: [](sec_matfactor), [](ch_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()` 15776bdecfbSBarry Smith J*/ 158ea799195SBarry Smith typedef const char *MatSolverType; 1592692d6eeSBarry Smith #define MATSOLVERSUPERLU "superlu" 1602692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST "superlu_dist" 16108f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK "strumpack" 1622692d6eeSBarry Smith #define MATSOLVERUMFPACK "umfpack" 16320db9a53SJed Brown #define MATSOLVERCHOLMOD "cholmod" 164d89f5e7aSBarry Smith #define MATSOLVERKLU "klu" 165d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL "elemental" 166d24d4204SJose E. Roman #define MATSOLVERSCALAPACK "scalapack" 1672692d6eeSBarry Smith #define MATSOLVERESSL "essl" 1682692d6eeSBarry Smith #define MATSOLVERLUSOL "lusol" 1692692d6eeSBarry Smith #define MATSOLVERMUMPS "mumps" 170d615f992SSatish Balay #define MATSOLVERMKL_PARDISO "mkl_pardiso" 171d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO "mkl_cpardiso" 1722692d6eeSBarry Smith #define MATSOLVERPASTIX "pastix" 1732692d6eeSBarry Smith #define MATSOLVERMATLAB "matlab" 1742692d6eeSBarry Smith #define MATSOLVERPETSC "petsc" 1752692d6eeSBarry Smith #define MATSOLVERBAS "bas" 1769ae82921SPaul Mullowney #define MATSOLVERCUSPARSE "cusparse" 177bfc799aaSStefano Zampini #define MATSOLVERCUDA "cuda" 17847d993e7Ssuyashtn #define MATSOLVERHIPSPARSE "hipsparse" 17947d993e7Ssuyashtn #define MATSOLVERHIP "hip" 180930e68a5SMark Adams #define MATSOLVERKOKKOS "kokkos" 181a2fc1e05SToby Isaac #define MATSOLVERSPQR "spqr" 1821dd4f53aSPierre Jolivet #define MATSOLVERHTOOL "htool" 183c0cdd4a1SDahai Guo 184b24902e0SBarry Smith /*E 185b24902e0SBarry Smith MatFactorType - indicates what type of factorization is requested 186b24902e0SBarry Smith 1872ef1f0ffSBarry Smith Values: 1882ef1f0ffSBarry Smith + `MAT_FACTOR_LU` - LU factorization 1892ef1f0ffSBarry Smith . `MAT_FACTOR_CHOLESKY` - Cholesky factorization 1902ef1f0ffSBarry Smith . `MAT_FACTOR_ILU` - ILU factorization 1912ef1f0ffSBarry Smith . `MAT_FACTOR_ICC` - incomplete Cholesky factorization 1922ef1f0ffSBarry Smith . `MAT_FACTOR_ILUDT` - ILU factorization with drop tolerance 1932ef1f0ffSBarry Smith - `MAT_FACTOR_QR` - QR factorization 194b24902e0SBarry Smith 19516a05f60SBarry Smith Level: beginner 19616a05f60SBarry Smith 1971cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()` 198b24902e0SBarry Smith E*/ 1999371c9d4SSatish Balay typedef enum { 2009371c9d4SSatish Balay MAT_FACTOR_NONE, 2019371c9d4SSatish Balay MAT_FACTOR_LU, 2029371c9d4SSatish Balay MAT_FACTOR_CHOLESKY, 2039371c9d4SSatish Balay MAT_FACTOR_ILU, 2049371c9d4SSatish Balay MAT_FACTOR_ICC, 2059371c9d4SSatish Balay MAT_FACTOR_ILUDT, 2069371c9d4SSatish Balay MAT_FACTOR_QR, 2079371c9d4SSatish Balay MAT_FACTOR_NUM_TYPES 2089371c9d4SSatish Balay } MatFactorType; 209014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[]; 210e92e720dSBarry Smith 211ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *); 212ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *); 213f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *); 214edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 15, 0, "MatFactorGetCanUseOrdering()", ) static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b) 215d71ae5a4SJacob Faibussowitsch { 2169371c9d4SSatish Balay return MatFactorGetCanUseOrdering(A, b); 2179371c9d4SSatish Balay } 218ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *); 219014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *); 2207abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType); 2218434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode(MatSolverFn)(Mat, MatFactorType, Mat *); 2228434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatSolverFn *MatSolverFunction; 22307e0ed13SBarry Smith 2248434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFn *); 2258434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFn **); 226edd03b47SJacob Faibussowitsch typedef MatSolverType MatSolverPackage PETSC_DEPRECATED_TYPEDEF(3, 9, 0, "MatSolverType", ); 2278434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeRegister()", ) static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFn *f) 228d71ae5a4SJacob Faibussowitsch { 2299371c9d4SSatish Balay return MatSolverTypeRegister(stype, mtype, ftype, f); 2309371c9d4SSatish Balay } 2318434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeGet()", ) static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFn **f) 232d71ae5a4SJacob Faibussowitsch { 2339371c9d4SSatish Balay return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f); 2349371c9d4SSatish Balay } 2359989ab13SBarry Smith 2364222ddf1SHong Zhang /*E 23795bd0b28SBarry Smith MatProductType - indicates what type of matrix product to compute 2384222ddf1SHong Zhang 2392ef1f0ffSBarry Smith Values: 2402ef1f0ffSBarry Smith + `MATPRODUCT_AB` - product of two matrices 2412ef1f0ffSBarry Smith . `MATPRODUCT_AtB` - product of the transpose of a given matrix with a matrix 2422ef1f0ffSBarry Smith . `MATPRODUCT_ABt` - product of a matrix with the transpose of another given matrix 2432ef1f0ffSBarry Smith . `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself 2442ef1f0ffSBarry Smith . `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix 2452ef1f0ffSBarry Smith - `MATPRODUCT_ABC` - the product of three matrices 2462ef1f0ffSBarry Smith 24716a05f60SBarry Smith Level: beginner 24816a05f60SBarry Smith 2491cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatProductSetType()` 2504222ddf1SHong Zhang E*/ 2519371c9d4SSatish Balay typedef enum { 2529371c9d4SSatish Balay MATPRODUCT_UNSPECIFIED = 0, 2539371c9d4SSatish Balay MATPRODUCT_AB, 2549371c9d4SSatish Balay MATPRODUCT_AtB, 2559371c9d4SSatish Balay MATPRODUCT_ABt, 2569371c9d4SSatish Balay MATPRODUCT_PtAP, 2579371c9d4SSatish Balay MATPRODUCT_RARt, 2589371c9d4SSatish Balay MATPRODUCT_ABC 2599371c9d4SSatish Balay } MatProductType; 260544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[]; 2614222ddf1SHong Zhang 2624222ddf1SHong Zhang /*J 2634222ddf1SHong Zhang MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation 2644222ddf1SHong Zhang 2654222ddf1SHong Zhang Level: beginner 2664222ddf1SHong Zhang 2671cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType` 2684222ddf1SHong Zhang J*/ 2694222ddf1SHong Zhang typedef const char *MatProductAlgorithm; 2703e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT "default" 2713e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED "sorted" 2723e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE "scalable" 2733e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST "scalable_fast" 2743e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP "heap" 2753e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP "btheap" 2763e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED "llcondensed" 2773e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE "rowmerge" 2783e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT "outerproduct" 2793e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB "at*b" 2803e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP "rap" 2813e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE "nonscalable" 2823e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI "seqmpi" 2833e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND "backend" 2843e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING "overlapping" 2853e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED "merged" 2863e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE "allatonce" 2873e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged" 2883e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV "allgatherv" 2893e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC "cyclic" 2903e662e0bSHong Zhang #define MATPRODUCTALGORITHMHYPRE "hypre" 2914222ddf1SHong Zhang 2924222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *); 2934222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat); 2944222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType); 2954222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm); 2968fcac130SJose E. Roman PETSC_EXTERN PetscErrorCode MatProductGetAlgorithm(Mat, MatProductAlgorithm *); 2974222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal); 2984222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat); 2994222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat); 3004222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat); 3014222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat); 3024417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat); 3036718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer); 304c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *); 305c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *); 3064222ddf1SHong Zhang 307c06d978dSMatthew Knepley /* Logging support */ 3080700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */ 309014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID; 310335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID; 311014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID; 312014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID; 313014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID; 314014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID; 315014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID; 316014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID; 317c06d978dSMatthew Knepley 318ceb03754SKris Buschelman /*E 3192ef1f0ffSBarry Smith MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions 320cf37664fSBarry Smith are to be reused to store the new matrix values. 321cf37664fSBarry Smith 3222ef1f0ffSBarry Smith Values: 3232ef1f0ffSBarry Smith + `MAT_INITIAL_MATRIX` - create a new matrix 3242ef1f0ffSBarry Smith . `MAT_REUSE_MATRIX` - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX` 3252ef1f0ffSBarry Smith . `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions) 3262ef1f0ffSBarry Smith - `MAT_IGNORE_MATRIX` - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions) 327ceb03754SKris Buschelman 328ceb03754SKris Buschelman Level: beginner 329ceb03754SKris Buschelman 3301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()` 331ceb03754SKris Buschelman E*/ 3329371c9d4SSatish Balay typedef enum { 3339371c9d4SSatish Balay MAT_INITIAL_MATRIX, 3349371c9d4SSatish Balay MAT_REUSE_MATRIX, 3359371c9d4SSatish Balay MAT_IGNORE_MATRIX, 3369371c9d4SSatish Balay MAT_INPLACE_MATRIX 3379371c9d4SSatish Balay } MatReuse; 338ceb03754SKris Buschelman 3395494a064SHong Zhang /*E 3402ef1f0ffSBarry Smith MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()` 3412ef1f0ffSBarry Smith include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`. 3425494a064SHong Zhang 3432ef1f0ffSBarry Smith Values: 3442ef1f0ffSBarry Smith + `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values 3452ef1f0ffSBarry Smith - `MAT_GET_VALUES` - copy the matrix values 3462ef1f0ffSBarry Smith 34795bd0b28SBarry Smith Level: developer 34895bd0b28SBarry Smith 3492ef1f0ffSBarry Smith Developer Note: 3502ef1f0ffSBarry Smith Why is not just a boolean used for this information? 3512ef1f0ffSBarry Smith 3521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()` 3535494a064SHong Zhang E*/ 3549371c9d4SSatish Balay typedef enum { 3559371c9d4SSatish Balay MAT_DO_NOT_GET_VALUES, 3569371c9d4SSatish Balay MAT_GET_VALUES 3579371c9d4SSatish Balay } MatCreateSubMatrixOption; 3585494a064SHong Zhang 359607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void); 3604bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatFinalizePackage(void); 361c06d978dSMatthew Knepley 362014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *); 36377433607SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFromOptions(MPI_Comm, const char *, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt); 36519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType); 3660d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *); 3670d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType); 368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat); 369fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]); 370bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat)); 37123bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]); 372014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]); 37326cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]); 37426cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]); 375014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]); 376014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]); 3775d5d24bbSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatGetState(Mat, PetscObjectState *); 37884d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool); 379f69a0ea3SMatthew Knepley 380140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList; 381140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList; 382140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList; 38328988994SBarry Smith 3843b224e63SBarry Smith /*E 385aa6c7ce3SBarry Smith MatStructure - Indicates if two matrices have the same nonzero structure 3863b224e63SBarry Smith 3872ef1f0ffSBarry Smith Values: 3882ef1f0ffSBarry Smith + `SAME_NONZERO_PATTERN` - the two matrices have identical nonzero patterns 3892ef1f0ffSBarry Smith . `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns 3902ef1f0ffSBarry Smith . `SUBSET_NONZERO_PATTERN` - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix 3912ef1f0ffSBarry Smith - `UNKNOWN_NONZERO_PATTERN` - there is no known relationship between the nonzero patterns. In this case the implementations 3922ef1f0ffSBarry Smith may try to detect a relationship to optimize the operation 393531d0c6aSBarry Smith 39416a05f60SBarry Smith Level: beginner 39516a05f60SBarry Smith 396af27ebaaSBarry Smith Note: 397af27ebaaSBarry Smith Certain matrix operations (such as `MatAXPY()`) can run much faster if the sparsity pattern of the matrices are the same. But actually determining if 398af27ebaaSBarry Smith the patterns are the same may be costly. This provides a way for users who know something about the sparsity patterns to provide this information 399af27ebaaSBarry Smith to certain PETSc routines. 400af27ebaaSBarry Smith 4011cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()` 4023b224e63SBarry Smith E*/ 4039371c9d4SSatish Balay typedef enum { 4049371c9d4SSatish Balay DIFFERENT_NONZERO_PATTERN, 4059371c9d4SSatish Balay SUBSET_NONZERO_PATTERN, 4069371c9d4SSatish Balay SAME_NONZERO_PATTERN, 4079371c9d4SSatish Balay UNKNOWN_NONZERO_PATTERN 4089371c9d4SSatish Balay } MatStructure; 409d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[]; 4103b224e63SBarry Smith 4119779e05dSSatish Balay #if defined PETSC_HAVE_MKL_SPARSE 412ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 413ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 41480095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 415ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 41680095d54SIrina Sokolova #endif 417cd929ea3SAlp Dener 4184bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 4194bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 4204bf303faSJacob Faibussowitsch 421d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 422d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 423d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]); 424d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 42507e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *); 42607e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *); 42707e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *); 42807e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt); 429b921024eSHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *); 43080095d54SIrina Sokolova 4314bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 4324bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 433fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *); 434fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetSeqSELL(Mat, Mat *, Mat *, const PetscInt *[]); 4354bf303faSJacob Faibussowitsch 436014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 437014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 438014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 439014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 440014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 4418f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 4426a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]); 443014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *); 444*c0c276a7Ssdargavi PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, PetscInt, PetscInt, Mat, Mat, PetscInt *, Mat *); 4453b00a383SHong Zhang 446014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 447014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 448014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 4497e8381f9SStefano Zampini 450e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]); 45182a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]); 4527e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode); 453d21a29f3SJed Brown 454014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *); 455014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 456d21a29f3SJed Brown 457014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 458014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 45938f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 460014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 4614cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]); 462dfb205c3SBarry Smith 463014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *); 464c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *); 465014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *); 466c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *); 467986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *); 468267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *); 469bcf2175cSMatthew Knepley PETSC_EXTERN PetscErrorCode MatLRCSetMats(Mat, Mat, Mat, Vec, Mat); 470c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *); 471014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 472014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 473c0cdd4a1SDahai Guo 474014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *); 475014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter); 476014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *); 477014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *); 478014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat); 479014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat); 4809371c9d4SSatish Balay typedef enum { 4819371c9d4SSatish Balay MAT_COMPOSITE_MERGE_RIGHT, 4829371c9d4SSatish Balay MAT_COMPOSITE_MERGE_LEFT 4839371c9d4SSatish Balay } MatCompositeMergeType; 4848c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType); 485014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *); 4860da935d5SPierre Jolivet /*E 4870da935d5SPierre Jolivet MatCompositeType - indicates what type of `MATCOMPOSITE` is used 4880da935d5SPierre Jolivet 4890da935d5SPierre Jolivet Values: 4900da935d5SPierre Jolivet + `MAT_COMPOSITE_ADDITIVE` - sum of matrices (default) 4910da935d5SPierre Jolivet - `MAT_COMPOSITE_MULTIPLICATIVE` - product of matrices 4920da935d5SPierre Jolivet 4930da935d5SPierre Jolivet Level: beginner 4940da935d5SPierre Jolivet 4950da935d5SPierre Jolivet .seealso: [](ch_matrices), `MATCOMPOSITE`, `MatCompositeSetType()`, `MatCompositeGetType()` 4960da935d5SPierre Jolivet E*/ 4979371c9d4SSatish Balay typedef enum { 4989371c9d4SSatish Balay MAT_COMPOSITE_ADDITIVE, 4999371c9d4SSatish Balay MAT_COMPOSITE_MULTIPLICATIVE 5009371c9d4SSatish Balay } MatCompositeType; 501014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType); 5026dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *); 5033b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure); 5043b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *); 5056d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *); 5068b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *); 50703049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *); 5086d7c1e57SBarry Smith 50919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *); 510014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *); 511dedccee8SHong Zhang 512014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *); 5138060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *); 514d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *); 51506511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *); 516fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *); 51765f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *); 51854e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *); 51954e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS); 520014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *); 5213423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *); 522345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatCreateDiagonal(Vec, Mat *); 523345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetDiagonal(Mat, Vec *); 524345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreDiagonal(Mat, Vec *); 525345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetInverseDiagonal(Mat, Vec *); 526345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreInverseDiagonal(Mat, Vec *); 5271472f72bSBarry Smith 528978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE) 529d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 530978814f1SStefano Zampini #endif 531978814f1SStefano Zampini 532014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]); 533ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]); 534cc4c1da9SBarry Smith PETSC_EXTERN PetscErrorCode MatPythonCreate(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const char[], Mat *); 5351d6018f0SLisandro Dalcin 536846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat); 537674b392bSAlexander PETSC_EXTERN PetscErrorCode MatResetHash(Mat); 538014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat); 539014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *); 540e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *); 54121c89e3eSBarry Smith 542014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat); 543014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat); 544014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat); 545014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *); 546014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *); 547713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **); 5480da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *); 549479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat); 5508a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *); 55120c04d79SPierre Jolivet PETSC_EXTERN PetscErrorCode MatComputeVariableBlockEnvelope(Mat); 55299cafbc1SBarry Smith 553014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 5548a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode); 555014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 556014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]); 557014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]); 558014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]); 55973a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom); 56084cb2905SBarry Smith 5612ef4de8bSBarry Smith /*S 5622ef1f0ffSBarry Smith MatStencil - Data structure (C struct) for storing information about rows and 5632ef1f0ffSBarry Smith columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()` 56462ef0227SBarry Smith 5652ef1f0ffSBarry Smith Level: beginner 5662ef1f0ffSBarry Smith 5672ef1f0ffSBarry Smith Notes: 56862ef0227SBarry Smith The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored). 56915229ffcSPierre Jolivet The c represents the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored. 57062ef0227SBarry Smith 57187497f52SBarry Smith For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`. 572be479b30SJed Brown 5732ef1f0ffSBarry Smith For staggered grids, see `DMStagStencil` 5742ef4de8bSBarry Smith 5752ef1f0ffSBarry Smith Fortran Note: 5762ef1f0ffSBarry Smith See `MatSetValuesStencil()` for details. 5772ef4de8bSBarry Smith 5781cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`, 5792ef1f0ffSBarry Smith `DMStagStencil` 5802ef4de8bSBarry Smith S*/ 581435da068SBarry Smith typedef struct { 582c1ac3661SBarry Smith PetscInt k, j, i, c; 583435da068SBarry Smith } MatStencil; 5842ef4de8bSBarry Smith 585014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 586014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 587014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt); 588435da068SBarry Smith 589d91e6319SBarry Smith /*E 5902ef1f0ffSBarry Smith MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use 591d91e6319SBarry Smith 5922ef1f0ffSBarry Smith Values: 5932ef1f0ffSBarry Smith + `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix 5942ef1f0ffSBarry Smith - `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted 5952ef1f0ffSBarry Smith 59616a05f60SBarry Smith Level: beginner 59716a05f60SBarry Smith 5981cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()` 599d91e6319SBarry Smith E*/ 6009371c9d4SSatish Balay typedef enum { 6019371c9d4SSatish Balay MAT_FLUSH_ASSEMBLY = 1, 6029371c9d4SSatish Balay MAT_FINAL_ASSEMBLY = 0 6039371c9d4SSatish Balay } MatAssemblyType; 6044f58015eSStefano Zampini 605014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType); 606014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType); 607014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *); 6084f9c727eSBarry Smith 609d91e6319SBarry Smith /*E 6102ef1f0ffSBarry Smith MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage 611d91e6319SBarry Smith 612d91e6319SBarry Smith Level: beginner 613d91e6319SBarry Smith 6142ef1f0ffSBarry Smith Note: 6152ef1f0ffSBarry Smith See `MatSetOption()` for the use of the options 6162ef1f0ffSBarry Smith 6172ef1f0ffSBarry Smith Developer Note: 61895452b02SPatrick Sanan Entries that are negative need not be called collectively by all processes. 619382164b0SBarry Smith 6201cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetOption()` 621d91e6319SBarry Smith E*/ 6229371c9d4SSatish Balay typedef enum { 6239371c9d4SSatish Balay MAT_OPTION_MIN = -3, 624c5e4d11fSDmitry Karpeev MAT_UNUSED_NONZERO_LOCATION_ERR = -2, 62592d4d306SBarry Smith MAT_ROW_ORIENTED = -1, 626382164b0SBarry Smith MAT_SYMMETRIC = 1, 627382164b0SBarry Smith MAT_STRUCTURALLY_SYMMETRIC = 2, 6288c78258cSHong Zhang MAT_FORCE_DIAGONAL_ENTRIES = 3, 629382164b0SBarry Smith MAT_IGNORE_OFF_PROC_ENTRIES = 4, 630382164b0SBarry Smith MAT_USE_HASH_TABLE = 5, 631382164b0SBarry Smith MAT_KEEP_NONZERO_PATTERN = 6, 632382164b0SBarry Smith MAT_IGNORE_ZERO_ENTRIES = 7, 633382164b0SBarry Smith MAT_USE_INODES = 8, 634382164b0SBarry Smith MAT_HERMITIAN = 9, 635382164b0SBarry Smith MAT_SYMMETRY_ETERNAL = 10, 636c5e4d11fSDmitry Karpeev MAT_NEW_NONZERO_LOCATION_ERR = 11, 637382164b0SBarry Smith MAT_IGNORE_LOWER_TRIANGULAR = 12, 638382164b0SBarry Smith MAT_ERROR_LOWER_TRIANGULAR = 13, 639382164b0SBarry Smith MAT_GETROW_UPPERTRIANGULAR = 14, 640382164b0SBarry Smith MAT_SPD = 15, 64192d4d306SBarry Smith MAT_NO_OFF_PROC_ZERO_ROWS = 16, 64292d4d306SBarry Smith MAT_NO_OFF_PROC_ENTRIES = 17, 64392d4d306SBarry Smith MAT_NEW_NONZERO_LOCATIONS = 18, 644c5e4d11fSDmitry Karpeev MAT_NEW_NONZERO_ALLOCATION_ERR = 19, 645c5e4d11fSDmitry Karpeev MAT_SUBSET_OFF_PROC_ENTRIES = 20, 646c10200c1SHong Zhang MAT_SUBMAT_SINGLEIS = 21, 647957cac9fSHong Zhang MAT_STRUCTURE_ONLY = 22, 648071fcb05SBarry Smith MAT_SORTED_FULL = 23, 6491a2c6b5cSJunchao Zhang MAT_FORM_EXPLICIT_TRANSPOSE = 24, 650b94d7dedSBarry Smith MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25, 651b94d7dedSBarry Smith MAT_SPD_ETERNAL = 26, 6529371c9d4SSatish Balay MAT_OPTION_MAX = 27 6539371c9d4SSatish Balay } MatOption; 654e057df02SPaul Mullowney 6550f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions; 656014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOption(Mat, MatOption, PetscBool); 6577d68702bSBarry Smith PETSC_EXTERN PetscErrorCode MatGetOption(Mat, MatOption, PetscBool *); 658856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode MatPropagateSymmetryOptions(Mat, Mat); 65919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetType(Mat, MatType *); 66084cb2905SBarry Smith 661014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 662014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 663014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 664014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowUpperTriangular(Mat); 665014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowUpperTriangular(Mat); 666014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnVector(Mat, Vec, PetscInt); 6678c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetArray(Mat, PetscScalar *[]); 6688f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]); 669d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]); 6708c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArray(Mat, PetscScalar *[]); 6718f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]); 672d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]); 67321e72a00SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *); 674bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 6754099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetType(Mat, MatType); 676ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatSeqAIJKron(Mat, Mat, MatReuse, Mat *); 677388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *)); 6784099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList; 679cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJGetArray(Mat, PetscScalar *[]); 680cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJRestoreArray(Mat, PetscScalar *[]); 6818397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJGetArray(Mat, PetscScalar *[]); 6828397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]); 6838c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArray(Mat, PetscScalar *[]); 6848c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArray(Mat, PetscScalar *[]); 685d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDensePlaceArray(Mat, const PetscScalar[]); 686d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseReplaceArray(Mat, const PetscScalar[]); 687d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseResetArray(Mat); 6888572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArrayRead(Mat, const PetscScalar *[]); 6898572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayRead(Mat, const PetscScalar *[]); 6906947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetArrayWrite(Mat, PetscScalar *[]); 6916947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWrite(Mat, PetscScalar *[]); 692cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *); 693cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]); 694cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *); 695cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]); 696cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *); 697cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]); 698014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSize(Mat, PetscInt *); 699014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSize(Mat, PetscInt); 700014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSizes(Mat, PetscInt *, PetscInt *); 701014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizes(Mat, PetscInt, PetscInt); 70233d57670SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizesFromMats(Mat, Mat, Mat); 7036e25ca73SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVariableBlockSizes(Mat, PetscInt, const PetscInt[]); 7046e25ca73SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt *[]); 7050da83c2eSBarry Smith 70686aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]); 70786aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]); 7086947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *); 7096947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *); 7106947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *); 7116947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *); 7126947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *); 7136947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *); 714a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 7155ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *); 7161620fd73SBarry Smith 717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec); 718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec); 719014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec); 720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec); 721014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec); 722014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *); 723014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *); 724014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec); 725014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec); 726014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat); 727bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat); 728eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat); 729f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec); 730f5edf698SHong Zhang 731d91e6319SBarry Smith /*E 732d91e6319SBarry Smith MatDuplicateOption - Indicates if a duplicated sparse matrix should have 733d91e6319SBarry Smith its numerical values copied over or just its nonzero structure. 734d91e6319SBarry Smith 7352ef1f0ffSBarry Smith Values: 7362ef1f0ffSBarry Smith + `MAT_DO_NOT_COPY_VALUES` - Create a matrix using the same nonzero pattern as the original matrix, 7372ef1f0ffSBarry Smith with zeros for the numerical values 7382ef1f0ffSBarry Smith . `MAT_COPY_VALUES` - Create a matrix with the same nonzero pattern as the original matrix 7392ef1f0ffSBarry Smith and with the same numerical values. 7402ef1f0ffSBarry Smith - `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix 7412ef1f0ffSBarry Smith and does not copy it, using zeros for the numerical values. The parent and 7422ef1f0ffSBarry Smith child matrices will share their index (i and j) arrays, and you cannot 7432ef1f0ffSBarry Smith insert new nonzero entries into either matrix 7440018da39SRichard Tran Mills 74516a05f60SBarry Smith Level: beginner 74616a05f60SBarry Smith 74787497f52SBarry Smith Note: 74887497f52SBarry Smith Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in 74987497f52SBarry Smith this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified. 75070dcbbb9SBarry Smith 7511cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicate()` 752d91e6319SBarry Smith E*/ 7539371c9d4SSatish Balay typedef enum { 7549371c9d4SSatish Balay MAT_DO_NOT_COPY_VALUES, 7559371c9d4SSatish Balay MAT_COPY_VALUES, 7569371c9d4SSatish Balay MAT_SHARE_NONZERO_PATTERN 7579371c9d4SSatish Balay } MatDuplicateOption; 7582e8a6d31SBarry Smith 75919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *); 760014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *); 76194a9d846SBarry Smith 762014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure); 763014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer); 764014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *); 765014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *); 766014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *); 767014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *); 768014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *); 769b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *); 770b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *); 771014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *); 772014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer); 7737b80b807SBarry Smith 7741a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7751a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7761a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7771a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 778d4fbbf0eSBarry Smith 779d91e6319SBarry Smith /*S 78087497f52SBarry Smith MatInfo - Context of matrix information, used with `MatGetInfo()` 781d91e6319SBarry Smith 782d91e6319SBarry Smith Level: intermediate 783d91e6319SBarry Smith 7842ef1f0ffSBarry Smith Fortran Note: 7852ef1f0ffSBarry Smith Information is stored as a double-precision array of dimension `MAT_INFO_SIZE` 7862ef1f0ffSBarry Smith 7871cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetInfo()`, `MatInfoType` 788d91e6319SBarry Smith S*/ 7894e220ebcSLois Curfman McInnes typedef struct { 790b0a32e0cSBarry Smith PetscLogDouble block_size; /* block size */ 791b0a32e0cSBarry Smith PetscLogDouble nz_allocated, nz_used, nz_unneeded; /* number of nonzeros */ 792b0a32e0cSBarry Smith PetscLogDouble memory; /* memory allocated */ 793b0a32e0cSBarry Smith PetscLogDouble assemblies; /* number of matrix assemblies called */ 794b0a32e0cSBarry Smith PetscLogDouble mallocs; /* number of mallocs during MatSetValues() */ 795b0a32e0cSBarry Smith PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */ 796b0a32e0cSBarry Smith PetscLogDouble factor_mallocs; /* number of mallocs during factorization */ 7974e220ebcSLois Curfman McInnes } MatInfo; 7984e220ebcSLois Curfman McInnes 799d9274352SBarry Smith /*E 800d9274352SBarry Smith MatInfoType - Indicates if you want information about the local part of the matrix, 801d9274352SBarry Smith the entire parallel matrix or the maximum over all the local parts. 802d9274352SBarry Smith 8032ef1f0ffSBarry Smith Values: 8042ef1f0ffSBarry Smith + `MAT_LOCAL` - values for each MPI process part of the matrix 8052ef1f0ffSBarry Smith . `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes 8062ef1f0ffSBarry Smith - `MAT_GLOBAL_SUM` - sum of each value over all MPI processes 807d9274352SBarry Smith 80816a05f60SBarry Smith Level: beginner 80916a05f60SBarry Smith 8101cc06b55SBarry Smith .seealso: [](ch_matrices), `MatGetInfo()`, `MatInfo` 811d9274352SBarry Smith E*/ 8129371c9d4SSatish Balay typedef enum { 8139371c9d4SSatish Balay MAT_LOCAL = 1, 8149371c9d4SSatish Balay MAT_GLOBAL_MAX = 2, 8159371c9d4SSatish Balay MAT_GLOBAL_SUM = 3 8169371c9d4SSatish Balay } MatInfoType; 817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *); 818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec); 819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]); 820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]); 821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]); 822eede4a3fSMark Adams PETSC_EXTERN PetscErrorCode MatGetRowSumAbs(Mat, Vec); 823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]); 824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec); 825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *); 8267fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *); 8277fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat); 828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *); 829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *); 830014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec); 831014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode); 832a52676ecSHong Zhang 833014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *); 834014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *); 835014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *); 836014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 837014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 838e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 839e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 840a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 841a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 842cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 8434222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 844447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 84586919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *); 8467b80b807SBarry Smith 847014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *); 848014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *); 849857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *); 850857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *); 851857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *); 852857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *); 853857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *); 854857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *); 855857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *); 856014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat); 8571b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat); 858014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 859014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec); 860014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 861014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 862014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 863014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec); 8647b80b807SBarry Smith 865014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *); 866014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *); 867014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *); 868014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **); 869014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *); 870014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **); 871566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *); 8725ef9f2a5SBarry Smith 8737dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 874edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrices()", ) static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 875d71ae5a4SJacob Faibussowitsch { 8769371c9d4SSatish Balay return MatCreateSubMatrices(mat, n, irow, icol, scall, submat); 8779371c9d4SSatish Balay } 8787dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 879edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatricesMPI()", ) static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 880d71ae5a4SJacob Faibussowitsch { 8819371c9d4SSatish Balay return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat); 8829371c9d4SSatish Balay } 883014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]); 884df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]); 8857dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *); 886edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrix()", ) static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat) 887d71ae5a4SJacob Faibussowitsch { 8889371c9d4SSatish Balay return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat); 8899371c9d4SSatish Balay } 890014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *); 891014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *); 892014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *); 893014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *); 8947b80b807SBarry Smith 895014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *); 896014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *); 897014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat); 898014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *); 8998a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *); 900014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *); 901ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *); 902f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *); 903014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *); 904014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]); 9058efafbd8SBarry Smith 906014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt); 907aa1e27eaSFande Kong PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov); 908d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool); 9097b80b807SBarry Smith 910014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 91122440eb1SKris Buschelman 9127bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 9132df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 9147bab7c10SHong Zhang 915014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *); 916014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *); 91722440eb1SKris Buschelman 918014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 919014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *); 920bc011b1eSHong Zhang 921014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure); 922014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure); 9231c741599SHong Zhang 924014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar); 925014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar); 9267b80b807SBarry Smith 927014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping); 928014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 929a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *); 93081fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout); 931014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 932014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 933014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 934014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 935e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 936014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 937014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 938052efed2SBarry Smith 939014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt); 940014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *); 94190f02eecSBarry Smith 942014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec); 943014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec); 944014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec); 94530b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *); 94630b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *); 94730b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *); 9482a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *); 949edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 6, 0, "MatCreateVecs()", ) static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y) 950d71ae5a4SJacob Faibussowitsch { 9519371c9d4SSatish Balay return MatCreateVecs(mat, x, y); 9529371c9d4SSatish Balay } 95353cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *); 954014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *); 955014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *); 9563a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *); 9579c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *); 958bd481603SBarry Smith 959fe1fc275SAlexander PETSC_EXTERN PetscErrorCode MatCopyHashToXAIJ(Mat A, Mat B); 960c8d6c325SJunchao Zhang /*@C 9611620fd73SBarry Smith MatSetValue - Set a single entry into a matrix. 9621620fd73SBarry Smith 963e1c5b2e2SJose E. Roman Not Collective 964a9834a7dSSatish Balay 9651620fd73SBarry Smith Input Parameters: 966c8d6c325SJunchao Zhang + mat - the matrix 96716a05f60SBarry Smith . i - the row location of the entry 96816a05f60SBarry Smith . j - the column location of the entry 96916a05f60SBarry Smith . va - the value to insert 97087497f52SBarry Smith - mode - either `INSERT_VALUES` or `ADD_VALUES` 9711620fd73SBarry Smith 9721620fd73SBarry Smith Level: beginner 9731620fd73SBarry Smith 97495bd0b28SBarry Smith Notes: 97595bd0b28SBarry Smith This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()` 97695bd0b28SBarry Smith MUST be called after all calls to `MatSetValue()` have been completed. 97795bd0b28SBarry Smith 9782ef1f0ffSBarry Smith For efficiency one should use `MatSetValues()` and set several values simultaneously. 9792ef1f0ffSBarry Smith 980b43fc34aSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `InsertMode`, `MatGetValue()`, `MatSetValues()`, 9812ef1f0ffSBarry Smith `MatSetValueLocal()`, `MatSetValuesLocal()` 982c8d6c325SJunchao Zhang @*/ 983c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValue(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 984d71ae5a4SJacob Faibussowitsch { 985c8d6c325SJunchao Zhang return MatSetValues(mat, 1, &i, 1, &j, &va, mode); 9869371c9d4SSatish Balay } 9871620fd73SBarry Smith 988e5e5a7b5SPatrick Sanan /*@C 989e5e5a7b5SPatrick Sanan MatGetValue - Gets a single value from a matrix 9901620fd73SBarry Smith 991e5e5a7b5SPatrick Sanan Not Collective; can only return a value owned by the given process 992e5e5a7b5SPatrick Sanan 993e5e5a7b5SPatrick Sanan Input Parameters: 994e5e5a7b5SPatrick Sanan + mat - the matrix 995e5e5a7b5SPatrick Sanan . row - the row location of the entry 996e5e5a7b5SPatrick Sanan - col - the column location of the entry 997e5e5a7b5SPatrick Sanan 998e5e5a7b5SPatrick Sanan Output Parameter: 999e5e5a7b5SPatrick Sanan . va - the value 1000e5e5a7b5SPatrick Sanan 10012ef1f0ffSBarry Smith Level: advanced 10022ef1f0ffSBarry Smith 1003e5e5a7b5SPatrick Sanan Notes: 1004b43fc34aSPierre Jolivet The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd()` before this call 10052ef1f0ffSBarry Smith 100687497f52SBarry Smith For efficiency one should use `MatGetValues()` and get several values simultaneously. 1007e5e5a7b5SPatrick Sanan 100887497f52SBarry Smith See notes for `MatGetValues()`. 1009e5e5a7b5SPatrick Sanan 1010b43fc34aSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()` 1011e5e5a7b5SPatrick Sanan @*/ 1012d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va) 1013d71ae5a4SJacob Faibussowitsch { 10149371c9d4SSatish Balay return MatGetValues(mat, 1, &row, 1, &col, va); 10159371c9d4SSatish Balay } 1016e5e5a7b5SPatrick Sanan 1017c8d6c325SJunchao Zhang /*@C 10182ef1f0ffSBarry Smith MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes. 1019e5e5a7b5SPatrick Sanan 1020e5e5a7b5SPatrick Sanan Not Collective 1021e5e5a7b5SPatrick Sanan 1022e5e5a7b5SPatrick Sanan Input Parameters: 1023c8d6c325SJunchao Zhang + mat - the matrix 102416a05f60SBarry Smith . i - the row location of the entry 102516a05f60SBarry Smith . j - the column location of the entry 102616a05f60SBarry Smith . va - the value to insert 102787497f52SBarry Smith - mode - either `INSERT_VALUES` or `ADD_VALUES` 1028e5e5a7b5SPatrick Sanan 10292ef1f0ffSBarry Smith Level: intermediate 10302ef1f0ffSBarry Smith 1031e5e5a7b5SPatrick Sanan Notes: 103287497f52SBarry Smith For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously. 1033e5e5a7b5SPatrick Sanan 103487497f52SBarry Smith See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used. 1035e5e5a7b5SPatrick Sanan 10361cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSetValue()`, `MatSetValuesLocal()` 1037c8d6c325SJunchao Zhang @*/ 1038c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValueLocal(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 1039d71ae5a4SJacob Faibussowitsch { 1040c8d6c325SJunchao Zhang return MatSetValuesLocal(mat, 1, &i, 1, &j, &va, mode); 10419371c9d4SSatish Balay } 10421620fd73SBarry Smith 10431620fd73SBarry Smith /*MC 1044d0609cedSBarry Smith MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per 1045bd481603SBarry Smith row in a matrix providing the data that one can use to correctly preallocate the matrix. 1046bd481603SBarry Smith 1047bd481603SBarry Smith Synopsis: 1048aaa7dc30SBarry Smith #include <petscmat.h> 1049d0609cedSBarry Smith PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz) 1050bd481603SBarry Smith 1051d083f849SBarry Smith Collective 1052bd481603SBarry Smith 1053bd481603SBarry Smith Input Parameters: 1054bd481603SBarry Smith + comm - the communicator that will share the eventually allocated matrix 1055859fcb39SBarry Smith . nrows - the number of LOCAL rows in the matrix 1056859fcb39SBarry Smith - ncols - the number of LOCAL columns in the matrix 1057bd481603SBarry Smith 1058bd481603SBarry Smith Output Parameters: 1059bd481603SBarry Smith + dnz - the array that will be passed to the matrix preallocation routines 1060a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1061bd481603SBarry Smith 10622ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1063bd481603SBarry Smith 1064bd481603SBarry Smith Notes: 10652ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 10662ef1f0ffSBarry Smith the use of this routine 10672ef1f0ffSBarry Smith 1068d0609cedSBarry Smith This is a macro that handles its own error checking, it does not return an error code. 1069d0609cedSBarry Smith 10702ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1071bd481603SBarry Smith 10722ef1f0ffSBarry Smith Developer Note: 1073af27ebaaSBarry Smith This is a MACRO, not a function, because it has a leading { that is closed by `PetscPreallocateFinalize()`. 1074bd481603SBarry Smith 10751cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1076db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 1077bd481603SBarry Smith M*/ 10789371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \ 10799371c9d4SSatish Balay do { \ 10803ba16761SJacob Faibussowitsch PetscInt __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \ 10813ba16761SJacob Faibussowitsch PetscInt PETSC_UNUSED __start; \ 10829566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \ 10839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \ 10849371c9d4SSatish Balay __start = __end - __ncols; \ 10859371c9d4SSatish Balay (void)__start; \ 10869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \ 10875f80ce2aSJacob Faibussowitsch __rstart -= __nrows 10887c922b88SBarry Smith 1089edd03b47SJacob Faibussowitsch #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateBegin()", ) MatPreallocateBegin(__VA_ARGS__) 1090d0609cedSBarry Smith 1091bd481603SBarry Smith /*MC 1092bd481603SBarry Smith MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1093bd481603SBarry Smith inserted using a local number of the rows and columns 1094bd481603SBarry Smith 1095bd481603SBarry Smith Synopsis: 1096aaa7dc30SBarry Smith #include <petscmat.h> 1097c1ac3661SBarry Smith PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1098bd481603SBarry Smith 1099bd481603SBarry Smith Not Collective 1100bd481603SBarry Smith 1101bd481603SBarry Smith Input Parameters: 1102784ac674SJed Brown + map - the row mapping from local numbering to global numbering 1103bd481603SBarry Smith . nrows - the number of rows indicated 11041d73ed98SBarry Smith . rows - the indices of the rows 1105784ac674SJed Brown . cmap - the column mapping from local to global numbering 1106bd481603SBarry Smith . ncols - the number of columns in the matrix 1107bd481603SBarry Smith . cols - the columns indicated 1108bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1109a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1110bd481603SBarry Smith 11112ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1112bd481603SBarry Smith 1113bd481603SBarry Smith Notes: 11142ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11152ef1f0ffSBarry Smith the use of this routine 1116bd481603SBarry Smith 11172ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1118bd481603SBarry Smith 11191cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1120db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()` 1121bd481603SBarry Smith M*/ 112294bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 11239371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1124c4f061fbSSatish Balay 1125bd481603SBarry Smith /*MC 1126c1154cd5SBarry Smith MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1127c1154cd5SBarry Smith inserted using a local number of the rows and columns. This version removes any duplicate columns in cols 1128c1154cd5SBarry Smith 1129c1154cd5SBarry Smith Synopsis: 1130c1154cd5SBarry Smith #include <petscmat.h> 1131c1154cd5SBarry Smith PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1132c1154cd5SBarry Smith 1133c1154cd5SBarry Smith Not Collective 1134c1154cd5SBarry Smith 1135c1154cd5SBarry Smith Input Parameters: 1136c1154cd5SBarry Smith + map - the row mapping from local numbering to global numbering 1137c1154cd5SBarry Smith . nrows - the number of rows indicated 1138c1154cd5SBarry Smith . rows - the indices of the rows (these values are mapped to the global values) 1139c1154cd5SBarry Smith . cmap - the column mapping from local to global numbering 1140c1154cd5SBarry Smith . ncols - the number of columns in the matrix (this value will be changed if duplicate columns are found) 1141c1154cd5SBarry Smith . cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed) 1142c1154cd5SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1143a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1144c1154cd5SBarry Smith 11452ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1146c1154cd5SBarry Smith 1147c1154cd5SBarry Smith Notes: 11482ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11492ef1f0ffSBarry Smith the use of this routine 1150c1154cd5SBarry Smith 11512ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1152c1154cd5SBarry Smith 11531cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1154db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1155c1154cd5SBarry Smith M*/ 115694bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 11579371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1158c1154cd5SBarry Smith 1159c1154cd5SBarry Smith /*MC 1160d6e23781SBarry Smith MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1161bd481603SBarry Smith inserted using a local number of the rows and columns 1162bd481603SBarry Smith 1163bd481603SBarry Smith Synopsis: 1164aaa7dc30SBarry Smith #include <petscmat.h> 1165d6e23781SBarry Smith PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1166d6e23781SBarry Smith 1167d6e23781SBarry Smith Not Collective 1168d6e23781SBarry Smith 1169d6e23781SBarry Smith Input Parameters: 1170d6e23781SBarry Smith + map - the row mapping from local numbering to global numbering 1171d6e23781SBarry Smith . nrows - the number of rows indicated 1172d6e23781SBarry Smith . rows - the indices of the rows 1173d6e23781SBarry Smith . cmap - the column mapping from local to global numbering 1174d6e23781SBarry Smith . ncols - the number of columns in the matrix 1175d6e23781SBarry Smith . cols - the columns indicated 1176d6e23781SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1177a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1178d6e23781SBarry Smith 11792ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1180d6e23781SBarry Smith 1181d6e23781SBarry Smith Notes: 11822ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11832ef1f0ffSBarry Smith the use of this routine 1184d6e23781SBarry Smith 11852ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1186d6e23781SBarry Smith 11871cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1188db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()` 1189d6e23781SBarry Smith M*/ 119094bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 11919371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1192d6e23781SBarry Smith 1193d6e23781SBarry Smith /*MC 1194d6e23781SBarry Smith MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1195d6e23781SBarry Smith inserted using a local number of the rows and columns 1196d6e23781SBarry Smith 1197d6e23781SBarry Smith Synopsis: 1198d6e23781SBarry Smith #include <petscmat.h> 1199d6e23781SBarry Smith PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1200bd481603SBarry Smith 1201bd481603SBarry Smith Not Collective 1202bd481603SBarry Smith 1203bd481603SBarry Smith Input Parameters: 1204bd481603SBarry Smith + map - the mapping between local numbering and global numbering 1205bd481603SBarry Smith . nrows - the number of rows indicated 12061d73ed98SBarry Smith . rows - the indices of the rows 1207bd481603SBarry Smith . ncols - the number of columns in the matrix 1208bd481603SBarry Smith . cols - the columns indicated 1209bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1210a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1211bd481603SBarry Smith 12122ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1213bd481603SBarry Smith 1214bd481603SBarry Smith Notes: 12152ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12162ef1f0ffSBarry Smith the use of this routine 1217bd481603SBarry Smith 12182ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1219bd481603SBarry Smith 12201cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()` 1221db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1222bd481603SBarry Smith M*/ 122394bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \ 12249371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));) 1225e83a5d19SLisandro Dalcin 1226bd481603SBarry Smith /*MC 1227bd481603SBarry Smith MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1228bd481603SBarry Smith inserted using a local number of the rows and columns 1229bd481603SBarry Smith 1230bd481603SBarry Smith Synopsis: 1231aaa7dc30SBarry Smith #include <petscmat.h> 1232c1ac3661SBarry Smith PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1233bd481603SBarry Smith 1234bd481603SBarry Smith Not Collective 1235bd481603SBarry Smith 1236bd481603SBarry Smith Input Parameters: 123764075487SBarry Smith + row - the row 1238bd481603SBarry Smith . ncols - the number of columns in the matrix 1239a50f8bf6SHong Zhang - cols - the columns indicated 1240a50f8bf6SHong Zhang 1241a50f8bf6SHong Zhang Output Parameters: 1242a50f8bf6SHong Zhang + dnz - the array that will be passed to the matrix preallocation routines 1243a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1244bd481603SBarry Smith 12452ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1246bd481603SBarry Smith 1247bd481603SBarry Smith Notes: 12482ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12492ef1f0ffSBarry Smith the use of this routine 1250bd481603SBarry Smith 12512ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1252bd481603SBarry Smith 1253af27ebaaSBarry Smith This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin(). 12541620fd73SBarry Smith 12551cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1256db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1257bd481603SBarry Smith M*/ 12589371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \ 12599371c9d4SSatish Balay PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \ 126064075487SBarry Smith if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \ 1261a6042fd4SStefano Zampini else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 12629371c9d4SSatish Balay }) 12637c922b88SBarry Smith 1264bd481603SBarry Smith /*MC 1265d6e23781SBarry Smith MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1266bd481603SBarry Smith inserted using a local number of the rows and columns 1267bd481603SBarry Smith 1268bd481603SBarry Smith Synopsis: 1269aaa7dc30SBarry Smith #include <petscmat.h> 1270d6e23781SBarry Smith PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1271bd481603SBarry Smith 1272bd481603SBarry Smith Not Collective 1273bd481603SBarry Smith 1274bd481603SBarry Smith Input Parameters: 1275bd481603SBarry Smith + nrows - the number of rows indicated 12761d73ed98SBarry Smith . rows - the indices of the rows 1277bd481603SBarry Smith . ncols - the number of columns in the matrix 1278bd481603SBarry Smith . cols - the columns indicated 1279bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1280a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1281bd481603SBarry Smith 12822ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1283bd481603SBarry Smith 1284bd481603SBarry Smith Notes: 12852ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12862ef1f0ffSBarry Smith the use of this routine 1287bd481603SBarry Smith 12882ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1289bd481603SBarry Smith 1290af27ebaaSBarry Smith This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin(). 12911620fd73SBarry Smith 12921cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`, 1293db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1294bd481603SBarry Smith M*/ 129594bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \ 12969371c9d4SSatish Balay PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \ 1297d3d32019SBarry Smith if (cols[__i] >= __end) onz[row - __rstart]++; \ 1298a6042fd4SStefano Zampini else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 12999371c9d4SSatish Balay }) 1300d3d32019SBarry Smith 1301bd481603SBarry Smith /*MC 1302a6042fd4SStefano Zampini MatPreallocateLocation - An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists 130316371a99SBarry Smith 130416371a99SBarry Smith Synopsis: 1305aaa7dc30SBarry Smith #include <petscmat.h> 130616371a99SBarry Smith PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz) 130716371a99SBarry Smith 130816371a99SBarry Smith Not Collective 130916371a99SBarry Smith 131016371a99SBarry Smith Input Parameters: 1311a2b725a8SWilliam Gropp + A - matrix 131216371a99SBarry Smith . row - row where values exist (must be local to this process) 131316371a99SBarry Smith . ncols - number of columns 131416371a99SBarry Smith . cols - columns with nonzeros 131516371a99SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1316a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 131716371a99SBarry Smith 13182ef1f0ffSBarry Smith Level: deprecated (since v3.19) 131916371a99SBarry Smith 132016371a99SBarry Smith Notes: 13212ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 13222ef1f0ffSBarry Smith the use of this routine 132316371a99SBarry Smith 13242ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 132516371a99SBarry Smith 1326af27ebaaSBarry Smith Developer Note: 1327af27ebaaSBarry Smith This is a MACRO, not a function, because it uses a bunch of variables private to the MatPreallocation.... routines. 132816371a99SBarry Smith 13291cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1330db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 133116371a99SBarry Smith M*/ 1332d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz)) 133316371a99SBarry Smith 133416371a99SBarry Smith /*MC 1335d0609cedSBarry Smith MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per 1336bd481603SBarry Smith row in a matrix providing the data that one can use to correctly preallocate the matrix. 1337bd481603SBarry Smith 1338bd481603SBarry Smith Synopsis: 1339aaa7dc30SBarry Smith #include <petscmat.h> 1340d0609cedSBarry Smith PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz) 1341bd481603SBarry Smith 1342d083f849SBarry Smith Collective 1343bd481603SBarry Smith 1344bd481603SBarry Smith Input Parameters: 134516371a99SBarry Smith + dnz - the array that was be passed to the matrix preallocation routines 1346a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1347bd481603SBarry Smith 13482ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1349bd481603SBarry Smith 1350bd481603SBarry Smith Notes: 13512ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 13522ef1f0ffSBarry Smith the use of this routine 1353d0609cedSBarry Smith 13542ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1355bd481603SBarry Smith 13562ef1f0ffSBarry Smith Developer Note: 1357af27ebaaSBarry Smith This is a MACRO, not a function, because it closes the { started in MatPreallocateBegin(). 13581620fd73SBarry Smith 13591cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1360db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 1361bd481603SBarry Smith M*/ 13629371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \ 13639371c9d4SSatish Balay PetscCall(PetscFree2(dnz, onz)); \ 13649371c9d4SSatish Balay } \ 13659371c9d4SSatish Balay while (0) 1366d0609cedSBarry Smith 1367edd03b47SJacob Faibussowitsch #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateEnd()", ) MatPreallocateEnd(__VA_ARGS__) 13687c922b88SBarry Smith 13697b80b807SBarry Smith /* Routines unique to particular data structures */ 1370014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *); 1371698d4c6aSKris Buschelman 1372014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *); 1373014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *); 1374698d4c6aSKris Buschelman 1375014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]); 1376014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]); 1377014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1378014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1379014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1380014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool); 13817b80b807SBarry Smith 1382a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4 1383a96a251dSBarry Smith 1384014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1385014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1386014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]); 138719b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt); 1388273d9f13SBarry Smith 1389014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1390014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1391014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1392014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1393014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1394014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1395014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1396014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]); 1397b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *); 1398252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *); 1399014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]); 1400014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]); 14019230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 14029230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 1403014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *); 1404273d9f13SBarry Smith 140549a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *); 1406ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt); 1407edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatDenseSetLDA()", ) static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda) 1408d71ae5a4SJacob Faibussowitsch { 14099371c9d4SSatish Balay return MatDenseSetLDA(A, lda); 14109371c9d4SSatish Balay } 1411014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *); 14121b807ce4Svictorle 1413621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1414621e819fSSatish Balay 1415014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat); 1416014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat); 14172e8a6d31SBarry Smith 1418014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *); 14197cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *); 14207b80b807SBarry Smith /* 14217b80b807SBarry Smith These routines are not usually accessed directly, rather solving is 142294b7f48cSBarry Smith done through the KSP and PC interfaces. 14237b80b807SBarry Smith */ 14247b80b807SBarry Smith 142576bdecfbSBarry Smith /*J 14262ef1f0ffSBarry Smith MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used 14272ef1f0ffSBarry Smith to reduce fill in sparse factorizations. 1428d9274352SBarry Smith 1429d9274352SBarry Smith Level: beginner 1430d9274352SBarry Smith 14312c7c0729SBarry Smith Notes: 143216a05f60SBarry Smith If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one 143316a05f60SBarry Smith of its own. 14342c7c0729SBarry Smith 14352ef1f0ffSBarry Smith There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()` 14362ef1f0ffSBarry Smith 14372ef1f0ffSBarry Smith Developer Note: 14382ef1f0ffSBarry Smith This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning` 14392ef1f0ffSBarry Smith 14401cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`, 14412ef1f0ffSBarry Smith `PCFactorSetOrderingType()` 144276bdecfbSBarry Smith J*/ 144319fd82e9SBarry Smith typedef const char *MatOrderingType; 14442692d6eeSBarry Smith #define MATORDERINGNATURAL "natural" 14452692d6eeSBarry Smith #define MATORDERINGND "nd" 14462692d6eeSBarry Smith #define MATORDERING1WD "1wd" 14472692d6eeSBarry Smith #define MATORDERINGRCM "rcm" 14482692d6eeSBarry Smith #define MATORDERINGQMD "qmd" 14492692d6eeSBarry Smith #define MATORDERINGROWLENGTH "rowlength" 1450510184a7SJed Brown #define MATORDERINGWBM "wbm" 1451fc1bef75SJed Brown #define MATORDERINGSPECTRAL "spectral" 1452312e372aSBarry Smith #define MATORDERINGAMD "amd" /* only works if UMFPACK is installed with PETSc */ 1453048412efSPablo Brubeck #define MATORDERINGMETISND "metisnd" /* only works if METIS is installed with PETSc */ 14549bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */ 14552c7c0729SBarry Smith #define MATORDERINGEXTERNAL "external" /* uses an ordering type internal to the factorization package */ 1456b12f92e5SBarry Smith 145719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrdering(Mat, MatOrderingType, IS *, IS *); 1458140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrderingList(PetscFunctionList *); 1459bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *)); 1460140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList; 1461d4fbbf0eSBarry Smith 1462013e2dc7SBarry Smith #include "petscmatcoarsen.h" 1463013e2dc7SBarry Smith 1464014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS); 1465fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *); 1466a2ce50c7SBarry Smith 14674ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *); 14684ac6704cSBarry Smith 1469d91e6319SBarry Smith /*S 14702ef1f0ffSBarry Smith MatFactorShiftType - Type of numeric shift used for factorizations 1471d90ac83dSHong Zhang 14722ef1f0ffSBarry Smith Values: 14732ef1f0ffSBarry Smith + `MAT_SHIFT_NONE` - do not shift the matrix diagonal entries 14742ef1f0ffSBarry Smith . `MAT_SHIFT_NONZERO` - shift the entries to be non-zero 14752ef1f0ffSBarry Smith . `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite 14762ef1f0ffSBarry Smith - `MAT_SHIFT_INBLOCKS` - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ` 1477d90ac83dSHong Zhang 14782ef1f0ffSBarry Smith Level: intermediate 14792ef1f0ffSBarry Smith 14801cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()` 1481d90ac83dSHong Zhang S*/ 14829371c9d4SSatish Balay typedef enum { 14839371c9d4SSatish Balay MAT_SHIFT_NONE, 14849371c9d4SSatish Balay MAT_SHIFT_NONZERO, 14859371c9d4SSatish Balay MAT_SHIFT_POSITIVE_DEFINITE, 14869371c9d4SSatish Balay MAT_SHIFT_INBLOCKS 14879371c9d4SSatish Balay } MatFactorShiftType; 14886a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[]; 14895e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[]; 1490d90ac83dSHong Zhang 1491d90ac83dSHong Zhang /*S 1492ec5066bdSBarry Smith MatFactorError - indicates what type of error was generated in a matrix factorization 14939aa7eafdSHong Zhang 14942ef1f0ffSBarry Smith Values: 14952ef1f0ffSBarry Smith + `MAT_FACTOR_NOERROR` - there was no error during the factorization 14962ef1f0ffSBarry Smith . `MAT_FACTOR_STRUCT_ZEROPIVOT` - there was a missing entry in a diagonal location of the matrix 14972ef1f0ffSBarry Smith . `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization 14982ef1f0ffSBarry Smith . `MAT_FACTOR_OUTMEMORY` - the factorization has run out of memory 14992ef1f0ffSBarry Smith - `MAT_FACTOR_OTHER` - some other error has occurred. 15009aa7eafdSHong Zhang 15012ef1f0ffSBarry Smith Level: intermediate 150200e125f8SBarry Smith 15032ef1f0ffSBarry Smith Note: 15042ef1f0ffSBarry Smith When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason` 15052ef1f0ffSBarry Smith 15061cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`, 15072ef1f0ffSBarry Smith `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason` 15089aa7eafdSHong Zhang S*/ 15099371c9d4SSatish Balay typedef enum { 15109371c9d4SSatish Balay MAT_FACTOR_NOERROR, 15119371c9d4SSatish Balay MAT_FACTOR_STRUCT_ZEROPIVOT, 15129371c9d4SSatish Balay MAT_FACTOR_NUMERIC_ZEROPIVOT, 15139371c9d4SSatish Balay MAT_FACTOR_OUTMEMORY, 15149371c9d4SSatish Balay MAT_FACTOR_OTHER 15159371c9d4SSatish Balay } MatFactorError; 15169aa7eafdSHong Zhang 151700e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *); 1518b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat); 15197b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *); 152000e125f8SBarry Smith 15219aa7eafdSHong Zhang /*S 1522422a814eSBarry Smith MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization 1523b00f7748SHong Zhang 1524b00f7748SHong Zhang Level: developer 1525b00f7748SHong Zhang 15262ef1f0ffSBarry Smith Note: 15272ef1f0ffSBarry Smith You can use `MatFactorInfoInitialize()` to set default values. 1528b00f7748SHong Zhang 15292ef1f0ffSBarry Smith Fortran Note: 15302ef1f0ffSBarry Smith The data is available in a double precision arrays of size `MAT_FACTORINFO_SIZE` 15312ef1f0ffSBarry Smith 15321cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, 15332ef1f0ffSBarry Smith `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()` 1534b00f7748SHong Zhang S*/ 1535b00f7748SHong Zhang typedef struct { 153615e8a5b3SHong Zhang PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */ 153785317021SBarry Smith PetscReal usedt; 153815e8a5b3SHong Zhang PetscReal dt; /* drop tolerance */ 1539b00f7748SHong Zhang PetscReal dtcol; /* tolerance for pivoting */ 154015e8a5b3SHong Zhang PetscReal dtcount; /* maximum nonzeros to be allowed per row */ 154167e28bfeSBarry Smith PetscReal fill; /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */ 1542348344bbSBarry Smith PetscReal levels; /* ICC/ILU(levels) */ 1543bcd9e38bSBarry Smith PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 1544bcd9e38bSBarry Smith factorization may be faster if do not pivot */ 154515e8a5b3SHong Zhang PetscReal zeropivot; /* pivot is called zero if less than this */ 1546f4db908eSBarry Smith PetscReal shifttype; /* type of shift added to matrix factor to prevent zero pivots */ 1547f4db908eSBarry Smith PetscReal shiftamount; /* how large the shift is */ 154815e8a5b3SHong Zhang } MatFactorInfo; 1549ffa6d0a5SLois Curfman McInnes 1550014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *); 15519a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *); 15529a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15539a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *); 15549a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *); 15559a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *); 15569a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 15579a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 15589a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15599a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *); 15609a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *); 15613f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *); 15623f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15633f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *); 1564014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *); 1565014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec); 1566014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec); 1567014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec); 1568014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec); 1569014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec); 1570014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec); 1571014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs); 15727c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat); 15737c2f51b8SStefano Zampini 15749371c9d4SSatish Balay typedef enum { 15759371c9d4SSatish Balay MAT_FACTOR_SCHUR_UNFACTORED, 15769371c9d4SSatish Balay MAT_FACTOR_SCHUR_FACTORED, 15779371c9d4SSatish Balay MAT_FACTOR_SCHUR_INVERTED 15789371c9d4SSatish Balay } MatFactorSchurStatus; 15798e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS); 15807c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 15817c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus); 15825a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat); 15837c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 15845a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec); 15855a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec); 15866dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat); 1587bb5a7306SBarry Smith 15888a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat); 1589d91e6319SBarry Smith /*E 1590d91e6319SBarry Smith MatSORType - What type of (S)SOR to perform 1591bb1eb677SSatish Balay 15922ef1f0ffSBarry Smith Values: 15932ef1f0ffSBarry Smith + `SOR_FORWARD_SWEEP` - do a sweep from the first row of the matrix to the last 15942ef1f0ffSBarry Smith . `SOR_BACKWARD_SWEEP` - do a sweep from the last row to the first 15952ef1f0ffSBarry Smith . `SOR_SYMMETRIC_SWEEP` - do a sweep from the first row to the last and then back to the first 1596af27ebaaSBarry Smith . `SOR_LOCAL_FORWARD_SWEEP` - each MPI process does its own forward sweep with no communication 1597af27ebaaSBarry Smith . `SOR_LOCAL_BACKWARD_SWEEP` - each MPI process does its own backward sweep with no communication 1598af27ebaaSBarry Smith . `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI process does its own symmetric sweep with no communication 15992ef1f0ffSBarry Smith . `SOR_ZERO_INITIAL_GUESS` - indicates the initial solution is zero so the sweep can avoid unneeded computation 16002ef1f0ffSBarry Smith . `SOR_EISENSTAT` - apply the Eisentat application of SOR, see `PCEISENSTAT` 16012ef1f0ffSBarry Smith . `SOR_APPLY_UPPER` - multiply by the upper triangular portion of the matrix 16022ef1f0ffSBarry Smith - `SOR_APPLY_LOWER` - multiply by the lower triangular portion of the matrix 16032ef1f0ffSBarry Smith 1604d91e6319SBarry Smith Level: beginner 1605d91e6319SBarry Smith 16062ef1f0ffSBarry Smith Note: 16072ef1f0ffSBarry Smith These may be bitwise ORd together 1608d9274352SBarry Smith 16092ef1f0ffSBarry Smith Developer Note: 16102ef1f0ffSBarry Smith Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below 1611d91e6319SBarry Smith 16121cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSOR()` 1613d91e6319SBarry Smith E*/ 16149371c9d4SSatish Balay typedef enum { 16159371c9d4SSatish Balay SOR_FORWARD_SWEEP = 1, 16169371c9d4SSatish Balay SOR_BACKWARD_SWEEP = 2, 16179371c9d4SSatish Balay SOR_SYMMETRIC_SWEEP = 3, 16189371c9d4SSatish Balay SOR_LOCAL_FORWARD_SWEEP = 4, 16199371c9d4SSatish Balay SOR_LOCAL_BACKWARD_SWEEP = 8, 16209371c9d4SSatish Balay SOR_LOCAL_SYMMETRIC_SWEEP = 12, 16219371c9d4SSatish Balay SOR_ZERO_INITIAL_GUESS = 16, 16229371c9d4SSatish Balay SOR_EISENSTAT = 32, 16239371c9d4SSatish Balay SOR_APPLY_UPPER = 64, 16249371c9d4SSatish Balay SOR_APPLY_LOWER = 128 16259371c9d4SSatish Balay } MatSORType; 1626014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec); 16278ed539a5SBarry Smith 16287086a01eSPeter Brune /*S 16297086a01eSPeter Brune MatColoring - Object for managing the coloring of matrices. 16307086a01eSPeter Brune 16317086a01eSPeter Brune Level: beginner 16327086a01eSPeter Brune 1633ec5066bdSBarry Smith Notes: 163487497f52SBarry Smith Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 163587497f52SBarry Smith matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors). 1636ec5066bdSBarry Smith 163787497f52SBarry Smith Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This 16382ef1f0ffSBarry Smith same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices. 1639ec5066bdSBarry Smith 16401cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`, 16412ef1f0ffSBarry Smith `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`, 16422ef1f0ffSBarry Smith `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen` 16437086a01eSPeter Brune S*/ 1644d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring; 1645d4db15c4SBarry Smith 1646d4db15c4SBarry Smith /*J 1647d4db15c4SBarry Smith MatColoringType - String with the name of a PETSc matrix coloring 1648d9274352SBarry Smith 1649d9274352SBarry Smith Level: beginner 1650d9274352SBarry Smith 16511cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring` 165276bdecfbSBarry Smith J*/ 165319fd82e9SBarry Smith typedef const char *MatColoringType; 16545567d71aSPeter Brune #define MATCOLORINGJP "jp" 1655b9acb617SPeter Brune #define MATCOLORINGPOWER "power" 16562692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural" 16572692d6eeSBarry Smith #define MATCOLORINGSL "sl" 16582692d6eeSBarry Smith #define MATCOLORINGLF "lf" 16592692d6eeSBarry Smith #define MATCOLORINGID "id" 16608121bdceSPeter Brune #define MATCOLORINGGREEDY "greedy" 1661b12f92e5SBarry Smith 16628ac6da0aSPeter Brune /*E 16632ef1f0ffSBarry Smith MatColoringWeightType - Type of weight scheme used for the coloring algorithm 16648ac6da0aSPeter Brune 16652ef1f0ffSBarry Smith Values: 166687497f52SBarry Smith + `MAT_COLORING_RANDOM` - Random weights 166787497f52SBarry Smith . `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering. 166887497f52SBarry Smith - `MAT_COLORING_LF` - Last-first weighting. 16698ac6da0aSPeter Brune 16708ac6da0aSPeter Brune Level: intermediate 16718ac6da0aSPeter Brune 16721cc06b55SBarry Smith .seealso: [](ch_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()` 16738ac6da0aSPeter Brune E*/ 16749371c9d4SSatish Balay typedef enum { 16759371c9d4SSatish Balay MAT_COLORING_WEIGHT_RANDOM, 16769371c9d4SSatish Balay MAT_COLORING_WEIGHT_LEXICAL, 16779371c9d4SSatish Balay MAT_COLORING_WEIGHT_LF, 16789371c9d4SSatish Balay MAT_COLORING_WEIGHT_SL 16799371c9d4SSatish Balay } MatColoringWeightType; 16808ac6da0aSPeter Brune 1681335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *); 1682d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *); 1683335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *); 1684335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer); 1685335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType); 1686335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring); 1687335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt); 1688335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *); 1689335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt); 1690335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *); 1691335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *); 1692335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring)); 1693014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *); 16948ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType); 1695c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *); 16968ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm); 1697bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring); 1698edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatColoringTest()", ) static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring) 1699d71ae5a4SJacob Faibussowitsch { 17009371c9d4SSatish Balay return MatColoringTest(matcoloring, iscoloring); 17019371c9d4SSatish Balay } 1702bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring); 1703639f9d9dSBarry Smith 1704d9274352SBarry Smith /*S 170587497f52SBarry Smith MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring 1706639f9d9dSBarry Smith 1707d9274352SBarry Smith Level: beginner 1708d9274352SBarry Smith 1709ec5066bdSBarry Smith Notes: 171087497f52SBarry Smith This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()` 1711ec5066bdSBarry Smith 17122ef1f0ffSBarry Smith The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object 17132ef1f0ffSBarry Smith 17141cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()` 1715d9274352SBarry Smith S*/ 1716e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring; 1717639f9d9dSBarry Smith 1718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *); 1719014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *); 1720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer); 1721014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *); 1722014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **); 1723014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal); 1724014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring); 1725d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *); 1726014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec); 1727edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]); 1728f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring); 1729f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt); 1730bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *); 1731b1683b59SHong Zhang 1732b1683b59SHong Zhang /*S 1733af27ebaaSBarry Smith MatTransposeColoring - Object for computing a sparse matrix product $C = A*B^T$ via coloring 1734b1683b59SHong Zhang 17352ef1f0ffSBarry Smith Level: developer 1736b1683b59SHong Zhang 17371cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()` 1738b1683b59SHong Zhang S*/ 1739b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring; 1740b1683b59SHong Zhang 1741014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *); 1742014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat); 1743014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat); 1744014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *); 1745b1683b59SHong Zhang 1746d9274352SBarry Smith /*S 1747d9274352SBarry Smith MatPartitioning - Object for managing the partitioning of a matrix or graph 1748d9274352SBarry Smith 1749d9274352SBarry Smith Level: beginner 1750d9274352SBarry Smith 175187497f52SBarry Smith Note: 175287497f52SBarry Smith There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations 175387497f52SBarry Smith via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`) 1754ec5066bdSBarry Smith 1755b5e6e808SPierre Jolivet Developer Note: 17562ef1f0ffSBarry Smith It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed 1757ec5066bdSBarry Smith 17581cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`, 17592ef1f0ffSBarry Smith `MatCoarsenType`, `MatCoarsenType` 1760d9274352SBarry Smith S*/ 176191e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning; 1762d9274352SBarry Smith 176376bdecfbSBarry Smith /*J 17648f6c3df8SBarry Smith MatPartitioningType - String with the name of a PETSc matrix partitioning 1765d9274352SBarry Smith 1766d9274352SBarry Smith Level: beginner 17670d04baf8SBarry Smith dm 17681cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`, 17692ef1f0ffSBarry Smith `MatCoarsenType`, `MatCoarsenType` 177076bdecfbSBarry Smith J*/ 177119fd82e9SBarry Smith typedef const char *MatPartitioningType; 17722692d6eeSBarry Smith #define MATPARTITIONINGCURRENT "current" 1773aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE "average" 17742692d6eeSBarry Smith #define MATPARTITIONINGSQUARE "square" 17752692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis" 17762692d6eeSBarry Smith #define MATPARTITIONINGCHACO "chaco" 17772692d6eeSBarry Smith #define MATPARTITIONINGPARTY "party" 177850d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch" 177988d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch" 178071306c60Sjroman 1781014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *); 178219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType); 1783014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt); 1784014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat); 1785252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt); 1786014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]); 1787014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]); 1788ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool); 1789ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *); 1790014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *); 1791fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *); 1792668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS); 1793f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *); 1794014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *); 1795bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning)); 1796014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer); 1797fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]); 1798014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning); 179919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *); 1800ca161407SBarry Smith 180127538973SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part); 1802014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning); 1803014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *); 18040752156aSBarry Smith 18059371c9d4SSatish Balay typedef enum { 18069371c9d4SSatish Balay MP_CHACO_MULTILEVEL = 1, 18079371c9d4SSatish Balay MP_CHACO_SPECTRAL = 2, 18089371c9d4SSatish Balay MP_CHACO_LINEAR = 4, 18099371c9d4SSatish Balay MP_CHACO_RANDOM = 5, 18109371c9d4SSatish Balay MP_CHACO_SCATTERED = 6 18119371c9d4SSatish Balay } MPChacoGlobalType; 18126a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[]; 18139371c9d4SSatish Balay typedef enum { 18149371c9d4SSatish Balay MP_CHACO_KERNIGHAN = 1, 18159371c9d4SSatish Balay MP_CHACO_NONE = 2 18169371c9d4SSatish Balay } MPChacoLocalType; 18176a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[]; 18189371c9d4SSatish Balay typedef enum { 18199371c9d4SSatish Balay MP_CHACO_LANCZOS = 0, 18209371c9d4SSatish Balay MP_CHACO_RQI = 1 18219371c9d4SSatish Balay } MPChacoEigenType; 18226a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[]; 1823b6956c12SJose Roman 1824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType); 1825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *); 1826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType); 1827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *); 1828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal); 1829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType); 1830014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *); 1831014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal); 1832014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *); 1833014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt); 1834014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *); 183571306c60Sjroman 183671306c60Sjroman #define MP_PARTY_OPT "opt" 183771306c60Sjroman #define MP_PARTY_LIN "lin" 183871306c60Sjroman #define MP_PARTY_SCA "sca" 183971306c60Sjroman #define MP_PARTY_RAN "ran" 184071306c60Sjroman #define MP_PARTY_GBF "gbf" 184171306c60Sjroman #define MP_PARTY_GCF "gcf" 184271306c60Sjroman #define MP_PARTY_BUB "bub" 184371306c60Sjroman #define MP_PARTY_DEF "def" 1844014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *); 184571306c60Sjroman #define MP_PARTY_HELPFUL_SETS "hs" 184671306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl" 184771306c60Sjroman #define MP_PARTY_NONE "no" 1848014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *); 1849014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal); 1850014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool); 1851014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool); 185271306c60Sjroman 18539371c9d4SSatish Balay typedef enum { 18549371c9d4SSatish Balay MP_PTSCOTCH_DEFAULT, 18559371c9d4SSatish Balay MP_PTSCOTCH_QUALITY, 18569371c9d4SSatish Balay MP_PTSCOTCH_SPEED, 18579371c9d4SSatish Balay MP_PTSCOTCH_BALANCE, 18589371c9d4SSatish Balay MP_PTSCOTCH_SAFETY, 18599371c9d4SSatish Balay MP_PTSCOTCH_SCALABILITY 18609371c9d4SSatish Balay } MPPTScotchStrategyType; 18616a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[]; 1862e0f1cffaSJose Roman 1863014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal); 1864014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *); 1865014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType); 1866014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *); 186771306c60Sjroman 1868b43b03e9SMark F. Adams /* 18696294fa2bSFande Kong * hierarchical partitioning 18706294fa2bSFande Kong */ 18714e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *); 18724e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *); 18734e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt); 18744e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt); 18756294fa2bSFande Kong 1876014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *); 1877591294e4SBarry Smith 18780752156aSBarry Smith /* 1879c786d857SStefano Zampini If you add entries here you must also add them to src/mat/f90-mod/petscmat.h 1880c786d857SStefano Zampini If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx 1881d4fbbf0eSBarry Smith */ 18829371c9d4SSatish Balay typedef enum { 18839371c9d4SSatish Balay MATOP_SET_VALUES = 0, 18841c1c02c0SLois Curfman McInnes MATOP_GET_ROW = 1, 18851c1c02c0SLois Curfman McInnes MATOP_RESTORE_ROW = 2, 18861c1c02c0SLois Curfman McInnes MATOP_MULT = 3, 18871c1c02c0SLois Curfman McInnes MATOP_MULT_ADD = 4, 18887c922b88SBarry Smith MATOP_MULT_TRANSPOSE = 5, 18897c922b88SBarry Smith MATOP_MULT_TRANSPOSE_ADD = 6, 18901c1c02c0SLois Curfman McInnes MATOP_SOLVE = 7, 18911c1c02c0SLois Curfman McInnes MATOP_SOLVE_ADD = 8, 18927c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE = 9, 18937c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE_ADD = 10, 18941c1c02c0SLois Curfman McInnes MATOP_LUFACTOR = 11, 18951c1c02c0SLois Curfman McInnes MATOP_CHOLESKYFACTOR = 12, 1896a714c06dSBarry Smith MATOP_SOR = 13, 18971c1c02c0SLois Curfman McInnes MATOP_TRANSPOSE = 14, 18981c1c02c0SLois Curfman McInnes MATOP_GETINFO = 15, 18991c1c02c0SLois Curfman McInnes MATOP_EQUAL = 16, 19001c1c02c0SLois Curfman McInnes MATOP_GET_DIAGONAL = 17, 19011c1c02c0SLois Curfman McInnes MATOP_DIAGONAL_SCALE = 18, 19021c1c02c0SLois Curfman McInnes MATOP_NORM = 19, 19031c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_BEGIN = 20, 19041c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_END = 21, 1905d519adbfSMatthew Knepley MATOP_SET_OPTION = 22, 1906d519adbfSMatthew Knepley MATOP_ZERO_ENTRIES = 23, 1907d519adbfSMatthew Knepley MATOP_ZERO_ROWS = 24, 1908d519adbfSMatthew Knepley MATOP_LUFACTOR_SYMBOLIC = 25, 1909d519adbfSMatthew Knepley MATOP_LUFACTOR_NUMERIC = 26, 1910d519adbfSMatthew Knepley MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27, 1911d519adbfSMatthew Knepley MATOP_CHOLESKY_FACTOR_NUMERIC = 28, 1912e5f2d425SStefano Zampini MATOP_SETUP = 29, 1913d519adbfSMatthew Knepley MATOP_ILUFACTOR_SYMBOLIC = 30, 1914d519adbfSMatthew Knepley MATOP_ICCFACTOR_SYMBOLIC = 31, 1915a5b7ff6bSBarry Smith MATOP_GET_DIAGONAL_BLOCK = 32, 1916e5f2d425SStefano Zampini MATOP_SET_INF = 33, 1917d519adbfSMatthew Knepley MATOP_DUPLICATE = 34, 1918d519adbfSMatthew Knepley MATOP_FORWARD_SOLVE = 35, 1919d519adbfSMatthew Knepley MATOP_BACKWARD_SOLVE = 36, 1920d519adbfSMatthew Knepley MATOP_ILUFACTOR = 37, 1921d519adbfSMatthew Knepley MATOP_ICCFACTOR = 38, 1922d519adbfSMatthew Knepley MATOP_AXPY = 39, 19237dae84e0SHong Zhang MATOP_CREATE_SUBMATRICES = 40, 1924d519adbfSMatthew Knepley MATOP_INCREASE_OVERLAP = 41, 1925d519adbfSMatthew Knepley MATOP_GET_VALUES = 42, 1926d519adbfSMatthew Knepley MATOP_COPY = 43, 1927d519adbfSMatthew Knepley MATOP_GET_ROW_MAX = 44, 1928d519adbfSMatthew Knepley MATOP_SCALE = 45, 1929d519adbfSMatthew Knepley MATOP_SHIFT = 46, 193035153367SBarry Smith MATOP_DIAGONAL_SET = 47, 19319d39f69dSJed Brown MATOP_ZERO_ROWS_COLUMNS = 48, 19329d39f69dSJed Brown MATOP_SET_RANDOM = 49, 1933d519adbfSMatthew Knepley MATOP_GET_ROW_IJ = 50, 1934d519adbfSMatthew Knepley MATOP_RESTORE_ROW_IJ = 51, 1935d519adbfSMatthew Knepley MATOP_GET_COLUMN_IJ = 52, 1936d519adbfSMatthew Knepley MATOP_RESTORE_COLUMN_IJ = 53, 1937d519adbfSMatthew Knepley MATOP_FDCOLORING_CREATE = 54, 1938d519adbfSMatthew Knepley MATOP_COLORING_PATCH = 55, 1939d519adbfSMatthew Knepley MATOP_SET_UNFACTORED = 56, 1940d519adbfSMatthew Knepley MATOP_PERMUTE = 57, 1941d519adbfSMatthew Knepley MATOP_SET_VALUES_BLOCKED = 58, 19427dae84e0SHong Zhang MATOP_CREATE_SUBMATRIX = 59, 1943d519adbfSMatthew Knepley MATOP_DESTROY = 60, 1944d519adbfSMatthew Knepley MATOP_VIEW = 61, 1945d519adbfSMatthew Knepley MATOP_CONVERT_FROM = 62, 1946e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_63=63 */ 19477bab7c10SHong Zhang MATOP_MATMAT_MULT_SYMBOLIC = 64, 19487bab7c10SHong Zhang MATOP_MATMAT_MULT_NUMERIC = 65, 1949d519adbfSMatthew Knepley MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66, 1950d519adbfSMatthew Knepley MATOP_SET_VALUES_LOCAL = 67, 1951d519adbfSMatthew Knepley MATOP_ZERO_ROWS_LOCAL = 68, 1952d519adbfSMatthew Knepley MATOP_GET_ROW_MAX_ABS = 69, 1953d519adbfSMatthew Knepley MATOP_GET_ROW_MIN_ABS = 70, 1954d519adbfSMatthew Knepley MATOP_CONVERT = 71, 1955e5f2d425SStefano Zampini MATOP_HAS_OPERATION = 72, 19569d39f69dSJed Brown /* MATOP_PLACEHOLDER_73=73, */ 1957d519adbfSMatthew Knepley MATOP_SET_VALUES_ADIFOR = 74, 1958d519adbfSMatthew Knepley MATOP_FD_COLORING_APPLY = 75, 1959d519adbfSMatthew Knepley MATOP_SET_FROM_OPTIONS = 76, 1960e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_77=77, */ 1961e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_78=78, */ 19629d39f69dSJed Brown MATOP_FIND_ZERO_DIAGONALS = 79, 1963d519adbfSMatthew Knepley MATOP_MULT_MULTIPLE = 80, 1964d519adbfSMatthew Knepley MATOP_SOLVE_MULTIPLE = 81, 1965d519adbfSMatthew Knepley MATOP_GET_INERTIA = 82, 1966d519adbfSMatthew Knepley MATOP_LOAD = 83, 1967d519adbfSMatthew Knepley MATOP_IS_SYMMETRIC = 84, 1968d519adbfSMatthew Knepley MATOP_IS_HERMITIAN = 85, 1969d519adbfSMatthew Knepley MATOP_IS_STRUCTURALLY_SYMMETRIC = 86, 1970820469bcSHong Zhang MATOP_SET_VALUES_BLOCKEDLOCAL = 87, 1971b41ce5d5SBarry Smith MATOP_CREATE_VECS = 88, 1972e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_89=89, */ 1973d519adbfSMatthew Knepley MATOP_MAT_MULT_SYMBOLIC = 90, 1974d519adbfSMatthew Knepley MATOP_MAT_MULT_NUMERIC = 91, 1975e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_92=92, */ 1976d519adbfSMatthew Knepley MATOP_PTAP_SYMBOLIC = 93, 1977d519adbfSMatthew Knepley MATOP_PTAP_NUMERIC = 94, 1978e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_95=95, */ 1979bda6c4cbSBarry Smith MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96, 1980bda6c4cbSBarry Smith MATOP_MAT_TRANSPOSE_MULT_NUMER = 97, 1981e5f2d425SStefano Zampini MATOP_BIND_TO_CPU = 98, 19827a3c3d58SStefano Zampini MATOP_PRODUCTSETFROMOPTIONS = 99, 19837a3c3d58SStefano Zampini MATOP_PRODUCTSYMBOLIC = 100, 19847a3c3d58SStefano Zampini MATOP_PRODUCTNUMERIC = 101, 1985d519adbfSMatthew Knepley MATOP_CONJUGATE = 102, 1986e5f2d425SStefano Zampini MATOP_VIEW_NATIVE = 103, 1987d519adbfSMatthew Knepley MATOP_SET_VALUES_ROW = 104, 1988d519adbfSMatthew Knepley MATOP_REAL_PART = 105, 1989bda6c4cbSBarry Smith MATOP_IMAGINARY_PART = 106, 1990bda6c4cbSBarry Smith MATOP_GET_ROW_UPPER_TRIANGULAR = 107, 1991bda6c4cbSBarry Smith MATOP_RESTORE_ROW_UPPER_TRIANG = 108, 1992bda6c4cbSBarry Smith MATOP_MAT_SOLVE = 109, 199329eadf9eSStefano Zampini MATOP_MAT_SOLVE_TRANSPOSE = 110, 1994d519adbfSMatthew Knepley MATOP_GET_ROW_MIN = 111, 19950e8d04f7SBarry Smith MATOP_GET_COLUMN_VECTOR = 112, 1996d519adbfSMatthew Knepley MATOP_MISSING_DIAGONAL = 113, 19970e8d04f7SBarry Smith MATOP_GET_SEQ_NONZERO_STRUCTUR = 114, 199889c6957cSBarry Smith MATOP_CREATE = 115, 199989c6957cSBarry Smith MATOP_GET_GHOSTS = 116, 20000e8d04f7SBarry Smith MATOP_GET_LOCAL_SUB_MATRIX = 117, 20010e8d04f7SBarry Smith MATOP_RESTORE_LOCALSUB_MATRIX = 118, 2002eeffb40dSHong Zhang MATOP_MULT_DIAGONAL_BLOCK = 119, 20030e8d04f7SBarry Smith MATOP_HERMITIAN_TRANSPOSE = 120, 20040e8d04f7SBarry Smith MATOP_MULT_HERMITIAN_TRANSPOSE = 121, 20050e8d04f7SBarry Smith MATOP_MULT_HERMITIAN_TRANS_ADD = 122, 20060e8d04f7SBarry Smith MATOP_GET_MULTI_PROC_BLOCK = 123, 20079d39f69dSJed Brown MATOP_FIND_NONZERO_ROWS = 124, 20080e8d04f7SBarry Smith MATOP_GET_COLUMN_NORMS = 125, 20099d39f69dSJed Brown MATOP_INVERT_BLOCK_DIAGONAL = 126, 2010e5f2d425SStefano Zampini MATOP_INVERT_VBLOCK_DIAGONAL = 127, 2011b41ce5d5SBarry Smith MATOP_CREATE_SUB_MATRICES_MPI = 128, 20122b8ad9a3SHong Zhang MATOP_SET_VALUES_BATCH = 129, 2013e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_130=130, */ 20140e8d04f7SBarry Smith MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131, 2015e9b602ebSSatish Balay MATOP_TRANSPOSE_MAT_MULT_NUMER = 132, 20160e8d04f7SBarry Smith MATOP_TRANSPOSE_COLORING_CREAT = 133, 20170e8d04f7SBarry Smith MATOP_TRANS_COLORING_APPLY_SPT = 134, 20180e8d04f7SBarry Smith MATOP_TRANS_COLORING_APPLY_DEN = 135, 2019e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_136=136, */ 20200e8d04f7SBarry Smith MATOP_RART_SYMBOLIC = 137, 20210e8d04f7SBarry Smith MATOP_RART_NUMERIC = 138, 2022e09a3074SHong Zhang MATOP_SET_BLOCK_SIZES = 139, 2023f9426fe0SMark Adams MATOP_AYPX = 140, 20241919a2e2SJed Brown MATOP_RESIDUAL = 141, 20259c8f2541SHong Zhang MATOP_FDCOLORING_SETUP = 142, 2026e5f2d425SStefano Zampini MATOP_FIND_OFFBLOCK_ENTRIES = 143, 20272d033e1fSHong Zhang MATOP_MPICONCATENATESEQ = 144, 2028bb01b7b0SPatrick Sanan MATOP_DESTROYSUBMATRICES = 145, 20294ac41c6fSJose E. Roman MATOP_MAT_TRANSPOSE_SOLVE = 146, 20304ac41c6fSJose E. Roman MATOP_GET_VALUES_LOCAL = 147, 20314ac41c6fSJose E. Roman MATOP_CREATE_GRAPH = 148, 20324ac41c6fSJose E. Roman /* MATOP_PLACEHOLDER_149=149, */ 20334ac41c6fSJose E. Roman MATOP_TRANSPOSE_SYMBOLIC = 150, 20344ac41c6fSJose E. Roman MATOP_ELIMINATE_ZEROS = 151, 20352b938fe4SJose E. Roman MATOP_GET_ROW_SUM_ABS = 152, 203642ce410bSJunchao Zhang MATOP_GET_FACTOR = 153, 203742ce410bSJunchao Zhang MATOP_GET_BLOCK_DIAGONAL = 154, // NOTE: caller of the two op functions owns the returned matrix 2038fe1fc275SAlexander MATOP_GET_VBLOCK_DIAGONAL = 155, // and need to destroy it after use. 2039fe1fc275SAlexander MATOP_COPY_HASH_TO_AIJ = 156 2040fae171e0SBarry Smith } MatOperation; 20410c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void)); 2042976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void)); 2043976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *); 204494342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *); 2045edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatProductClear()", ) static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A) 2046d71ae5a4SJacob Faibussowitsch { 20479371c9d4SSatish Balay return MatProductClear(A); 20489371c9d4SSatish Balay } 2049014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void)); 2050014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void)); 2051014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *); 2052d1319cabSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscCtxDestroyFn *); 2053db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType); 2054f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 2055f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 20560c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat); 2057b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType); 2058b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *); 2059112a2221SBarry Smith 206090ace30eSBarry Smith /* 206190ace30eSBarry Smith Codes for matrices stored on disk. By default they are 206290ace30eSBarry Smith stored in a universal format. By changing the format with 20636a9046bcSBarry Smith PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will 206490ace30eSBarry Smith be stored in a way natural for the matrix, for example dense matrices 206590ace30eSBarry Smith would be stored as dense. Matrices stored this way may only be 2066f4403165SShri Abhyankar read into matrices of the same type. 206790ace30eSBarry Smith */ 206890ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1 206990ace30eSBarry Smith 2070014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal); 207175d48cdbSStefano Zampini 20728546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType); 207375d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 20744f58015eSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetAllowRepeated(Mat, PetscBool); 20754f58015eSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetAllowRepeated(Mat, PetscBool *); 207675d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool); 2077f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool); 2078014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *); 20793b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *); 2080014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat); 2081e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 20821f4e1ec7SBarry Smith 2083d9274352SBarry Smith /*S 2084d9274352SBarry Smith MatNullSpace - Object that removes a null space from a vector, i.e. 2085cb6b9846SMatthew Knepley orthogonalizes the vector to a subspace 2086d9274352SBarry Smith 2087f7a9e4ceSBarry Smith Level: advanced 2088d9274352SBarry Smith 20891cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()` 2090d9274352SBarry Smith S*/ 209174637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace; 2092d9274352SBarry Smith 2093014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *); 2094014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *); 2095014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *); 2096d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec); 2097014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *); 20985fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *); 20995fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace); 2100014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace); 2101014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace); 2102014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *); 21034849c82aSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNullSpaces(PetscInt, Mat[], MatNullSpace *[]); 21044849c82aSBarry Smith PETSC_EXTERN PetscErrorCode MatRestoreNullSpaces(PetscInt, Mat[], MatNullSpace *[]); 2105014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *); 2106014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer); 2107014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **); 2108014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *); 210974637425SBarry Smith 2110014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS); 2111014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal); 2112014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *); 21133f1d51d7SBarry Smith 2114014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *); 2115014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *); 2116014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *); 2117c4f061fbSSatish Balay 21180bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *); 21190bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *); 21200bacdadaSStefano Zampini 2121edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperator()", ) static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B) 2122d71ae5a4SJacob Faibussowitsch { 2123f22e26b7SPierre Jolivet return MatComputeOperator(A, PETSC_NULLPTR, B); 21249371c9d4SSatish Balay } 2125edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperatorTranspose()", ) static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B) 2126d71ae5a4SJacob Faibussowitsch { 2127f22e26b7SPierre Jolivet return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B); 21289371c9d4SSatish Balay } 2129b0a32e0cSBarry Smith 213049bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *); 213149bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *); 2132a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **); 2133a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2134a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **); 2135a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **); 2136a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **); 2137a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2138a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **); 2139a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **); 2140dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat); 2141dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]); 2142dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]); 2143910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *); 214449bd79ccSDebojyoti Ghosh 2145014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec); 214604f1ad80SBarry Smith 21474bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDInitializePackage(void); 21484bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDFinalizePackage(void); 21494bf303faSJacob Faibussowitsch 2150014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2151014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec); 2152014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *); 2153014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *)); 2154014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec)); 2155014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt); 2156014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat); 2157014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal); 2158014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt); 2159014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *); 2160014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]); 2161014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *); 2162014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *); 2163e884886fSBarry Smith 21646370053bSBarry Smith /*S 21656370053bSBarry Smith MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free 21666370053bSBarry Smith Jacobian vector products 2167e884886fSBarry Smith 21682ef1f0ffSBarry Smith Level: developer 21692ef1f0ffSBarry Smith 217095452b02SPatrick Sanan Notes: 217187497f52SBarry Smith `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure 21726370053bSBarry Smith 21732ef1f0ffSBarry Smith MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure 21746370053bSBarry Smith 21752ef1f0ffSBarry Smith This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator` 21766370053bSBarry Smith 21771cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`, 21782ef1f0ffSBarry Smith `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator` 21796370053bSBarry Smith S*/ 2180e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD; 2181e884886fSBarry Smith 218276bdecfbSBarry Smith /*J 21832ef1f0ffSBarry Smith MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function 2184e884886fSBarry Smith 218516a05f60SBarry Smith Values: 2186af27ebaaSBarry Smith + `MATMFFD_DS` - an algorithm described by Dennis and Schnabel {cite}`dennis:83` 2187af27ebaaSBarry Smith - `MATMFFD_WP` - the Walker-Pernice {cite}`pw98` strategy. 218816a05f60SBarry Smith 2189e884886fSBarry Smith Level: beginner 2190e884886fSBarry Smith 21911cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()` 219276bdecfbSBarry Smith J*/ 219319fd82e9SBarry Smith typedef const char *MatMFFDType; 2194e884886fSBarry Smith #define MATMFFD_DS "ds" 2195e884886fSBarry Smith #define MATMFFD_WP "wp" 2196e884886fSBarry Smith 219719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType); 2198bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD)); 2199e884886fSBarry Smith 2200014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal); 2201014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool); 2202e884886fSBarry Smith 220361ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType); 220461ab5df0SBarry Smith 2205014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *); 2206014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *); 22077dbadf16SMatthew Knepley 220853022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS 22098434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscScalar(MatH2OpusKernelFn)(PetscInt, PetscReal[], PetscReal[], void *); 22108434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatH2OpusKernelFn *MatH2OpusKernel; 2211659ebe53SBarry Smith 22128434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernelFn *, void *, PetscReal, PetscInt, PetscInt, Mat *); 221353022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *); 221453022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal); 221553022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat); 221653022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal); 221753022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool); 221853022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *); 221953022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *); 222053022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *); 2221300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar); 2222a0d2e7d8SStefano Zampini #endif 2223a0d2e7d8SStefano Zampini 2224c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL 22258434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode(MatHtoolKernelFn)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *); 22268434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatHtoolKernelFn *MatHtoolKernel; 2227659ebe53SBarry Smith 22288434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernelFn *, void *, Mat *); 22298434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernelFn *, void *); 223098e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *); 223198e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *); 223298e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool); 22332ef1f0ffSBarry Smith 2234c7a4214aSPierre Jolivet /*E 223587497f52SBarry Smith MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL` 2236c7a4214aSPierre Jolivet 2237c7a4214aSPierre Jolivet Values: 223887497f52SBarry Smith + `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation 223987497f52SBarry Smith . `MAT_HTOOL_COMPRESSOR_FULL_ACA` - full adaptive cross approximation 224087497f52SBarry Smith - `MAT_HTOOL_COMPRESSOR_SVD` - singular value decomposition 2241c7a4214aSPierre Jolivet 224216a05f60SBarry Smith Level: intermediate 224316a05f60SBarry Smith 22441cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType` 2245c7a4214aSPierre Jolivet E*/ 22469371c9d4SSatish Balay typedef enum { 22479371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA, 22489371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_FULL_ACA, 22499371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_SVD 22509371c9d4SSatish Balay } MatHtoolCompressorType; 22512ef1f0ffSBarry Smith 225298e73e17SPierre Jolivet /*E 225387497f52SBarry Smith MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL` 225498e73e17SPierre Jolivet 225598e73e17SPierre Jolivet Values: 225687497f52SBarry Smith + `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default) - axis computed via principle component analysis, split uniformly 225787497f52SBarry Smith . `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC` - axis computed via principle component analysis, split barycentrically 225887497f52SBarry Smith . `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR` - axis along the largest extent of the bounding box, split uniformly 225987497f52SBarry Smith - `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically 226098e73e17SPierre Jolivet 226116a05f60SBarry Smith Level: intermediate 226216a05f60SBarry Smith 22632ef1f0ffSBarry Smith Note: 22642ef1f0ffSBarry Smith Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types 226598e73e17SPierre Jolivet 22661cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType` 226798e73e17SPierre Jolivet E*/ 22689371c9d4SSatish Balay typedef enum { 22699371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_PCA_REGULAR, 22709371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC, 22719371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR, 22729371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC 22739371c9d4SSatish Balay } MatHtoolClusteringType; 2274c7a4214aSPierre Jolivet #endif 2275c7a4214aSPierre Jolivet 227697969023SHong Zhang #ifdef PETSC_HAVE_MUMPS 2277014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt); 2278bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *); 2279b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal); 2280bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *); 2281bc6112feSHong Zhang 2282ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *); 2283ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *); 2284ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *); 2285ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *); 22865c0bae8cSAshish Patel PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **); 228789a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat); 22880e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat); 228997969023SHong Zhang #endif 229023a5497aSJed Brown 2291b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO 2292d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt); 2293b500a6b7SJose David Bermeol #endif 2294b500a6b7SJose David Bermeol 2295d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO 2296d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt); 2297d305a81bSVasiliy Kozyrev #endif 2298d305a81bSVasiliy Kozyrev 2299d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU 2300014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal); 2301d954db57SHong Zhang #endif 2302d954db57SHong Zhang 2303fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST 2304fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *); 2305fb785984SHong Zhang #endif 2306fb785984SHong Zhang 2307575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK 2308542aee0fSPieter Ghysels /*E 230929e0a805SPieter Ghysels MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK` 2310542aee0fSPieter Ghysels 23112ef1f0ffSBarry Smith Values: 23122ef1f0ffSBarry Smith + `MAT_STRUMPACK_NATURAL` - use the current ordering 23132ef1f0ffSBarry Smith . `MAT_STRUMPACK_METIS` - use MeTis to compute an ordering 23142ef1f0ffSBarry Smith . `MAT_STRUMPACK_PARMETIS` - use ParMeTis to compute an ordering 23152ef1f0ffSBarry Smith . `MAT_STRUMPACK_SCOTCH` - use Scotch to compute an ordering 23162ef1f0ffSBarry Smith . `MAT_STRUMPACK_PTSCOTCH` - use parallel Scotch to compute an ordering 231729e0a805SPieter Ghysels . `MAT_STRUMPACK_RCM` - use an RCM ordering 231829e0a805SPieter Ghysels . `MAT_STRUMPACK_GEOMETRIC` - use a geometric ordering (needs mesh info from user) 231929e0a805SPieter Ghysels . `MAT_STRUMPACK_AMD` - approximate minimum degree 232029e0a805SPieter Ghysels . `MAT_STRUMPACK_MMD` - multiple minimum degree 232129e0a805SPieter Ghysels . `MAT_STRUMPACK_AND` - approximate nested dissection 232229e0a805SPieter Ghysels . `MAT_STRUMPACK_MLF` - minimum local fill 232329e0a805SPieter Ghysels - `MAT_STRUMPACK_SPECTRAL` - spectral nested dissection 23242ef1f0ffSBarry Smith 232516a05f60SBarry Smith Level: intermediate 232616a05f60SBarry Smith 23272ef1f0ffSBarry Smith Developer Note: 23282ef1f0ffSBarry Smith Should be called `MatSTRUMPACKReorderingType` 23292ef1f0ffSBarry Smith 233029e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetReordering()` 2331542aee0fSPieter Ghysels E*/ 23329371c9d4SSatish Balay typedef enum { 233329e0a805SPieter Ghysels MAT_STRUMPACK_NATURAL, 233429e0a805SPieter Ghysels MAT_STRUMPACK_METIS, 233529e0a805SPieter Ghysels MAT_STRUMPACK_PARMETIS, 233629e0a805SPieter Ghysels MAT_STRUMPACK_SCOTCH, 233729e0a805SPieter Ghysels MAT_STRUMPACK_PTSCOTCH, 233829e0a805SPieter Ghysels MAT_STRUMPACK_RCM, 233929e0a805SPieter Ghysels MAT_STRUMPACK_GEOMETRIC, 234029e0a805SPieter Ghysels MAT_STRUMPACK_AMD, 234129e0a805SPieter Ghysels MAT_STRUMPACK_MMD, 234229e0a805SPieter Ghysels MAT_STRUMPACK_AND, 234329e0a805SPieter Ghysels MAT_STRUMPACK_MLF, 234429e0a805SPieter Ghysels MAT_STRUMPACK_SPECTRAL 23459371c9d4SSatish Balay } MatSTRUMPACKReordering; 23462ef1f0ffSBarry Smith 234734f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering); 234829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetReordering(Mat, MatSTRUMPACKReordering *); 234929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricNxyz(Mat, PetscInt, PetscInt, PetscInt); 235029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricComponents(Mat, PetscInt); 235129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricWidth(Mat, PetscInt); 2352575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool); 235329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetColPerm(Mat, PetscBool *); 235429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGPU(Mat, PetscBool); 235529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetGPU(Mat, PetscBool *); 235629e0a805SPieter Ghysels 235729e0a805SPieter Ghysels /*E 235829e0a805SPieter Ghysels MatSTRUMPACKCompressionType - Compression used in the approximate sparse factorization solver `MATSOLVERSTRUMPACK` 235929e0a805SPieter Ghysels 236029e0a805SPieter Ghysels Values: 236129e0a805SPieter Ghysels + `MAT_STRUMPACK_COMPRESSION_TYPE_NONE` - no compression, direct solver 236229e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_HSS` - hierarchically semi-separable 236329e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_BLR` - block low rank 236429e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_HODLR` - hierarchically off-diagonal low rank (requires ButterfyPACK support, configure with --download-butterflypack) 236529e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR` - hybrid of BLR and HODLR (requires ButterfyPACK support, configure with --download-butterflypack) 236629e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR` - hybrid of lossy (ZFP), BLR and HODLR (requires ButterfyPACK and ZFP support, configure with --download-butterflypack --download-zfp) 236729e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS` - lossless compression (requires ZFP support, configure with --download-zfp) 236829e0a805SPieter Ghysels - `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY` - lossy compression (requires ZFP support, configure with --download-zfp) 236929e0a805SPieter Ghysels 237029e0a805SPieter Ghysels Level: intermediate 237129e0a805SPieter Ghysels 237229e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetCompression()` 237329e0a805SPieter Ghysels E*/ 237429e0a805SPieter Ghysels typedef enum { 237529e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_NONE, 237629e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_HSS, 237729e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_BLR, 237829e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_HODLR, 237929e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR, 238029e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR, 238129e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS, 238229e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY 238329e0a805SPieter Ghysels } MatSTRUMPACKCompressionType; 238429e0a805SPieter Ghysels 238529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompression(Mat, MatSTRUMPACKCompressionType); 238629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompression(Mat, MatSTRUMPACKCompressionType *); 238729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompRelTol(Mat, PetscReal); 238829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompRelTol(Mat, PetscReal *); 238929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompAbsTol(Mat, PetscReal); 239029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompAbsTol(Mat, PetscReal *); 239129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompMinSepSize(Mat, PetscInt); 239229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompMinSepSize(Mat, PetscInt *); 239329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLeafSize(Mat, PetscInt); 239429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLeafSize(Mat, PetscInt *); 239529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLossyPrecision(Mat, PetscInt); 239629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLossyPrecision(Mat, PetscInt *); 239729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompButterflyLevels(Mat, PetscInt); 239829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompButterflyLevels(Mat, PetscInt *); 2399575704cbSPieter Ghysels #endif 2400575704cbSPieter Ghysels 2401b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool); 24022216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *); 2403edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 13, 0, "MatBindToCPU()", ) static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg) 2404d71ae5a4SJacob Faibussowitsch { 24059371c9d4SSatish Balay return MatBindToCPU(A, flg); 24069371c9d4SSatish Balay } 240765a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool); 2408e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *); 2409e7e92044SBarry Smith 2410aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA 24113f9c0db1SPaul Mullowney /*E 24122ef1f0ffSBarry Smith MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU) 24132692e278SPaul Mullowney matrices. 2414e057df02SPaul Mullowney 24152ef1f0ffSBarry Smith Values: 241687497f52SBarry Smith + `MAT_CUSPARSE_CSR` - Compressed Sparse Row 241787497f52SBarry Smith . `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later). 241887497f52SBarry Smith - `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later). 2419e057df02SPaul Mullowney 2420e057df02SPaul Mullowney Level: intermediate 2421e057df02SPaul Mullowney 24221cc06b55SBarry Smith .seealso: [](ch_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation` 2423e057df02SPaul Mullowney E*/ 2424e057df02SPaul Mullowney 24259371c9d4SSatish Balay typedef enum { 24269371c9d4SSatish Balay MAT_CUSPARSE_CSR, 24279371c9d4SSatish Balay MAT_CUSPARSE_ELL, 24289371c9d4SSatish Balay MAT_CUSPARSE_HYB 24299371c9d4SSatish Balay } MatCUSPARSEStorageFormat; 2430e057df02SPaul Mullowney 2431e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */ 2432e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[]; 2433e057df02SPaul Mullowney 24343f9c0db1SPaul Mullowney /*E 24352ef1f0ffSBarry Smith MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU) 24362692e278SPaul Mullowney matrices whose operation should use a particular storage format. 2437e057df02SPaul Mullowney 24382ef1f0ffSBarry Smith Values: 24394cf0e950SBarry Smith + `MAT_CUSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()` 24404cf0e950SBarry Smith . `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()` 24414cf0e950SBarry Smith . `MAT_CUSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()` 24422ef1f0ffSBarry Smith - `MAT_CUSPARSE_ALL` - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices 2443e057df02SPaul Mullowney 2444e057df02SPaul Mullowney Level: intermediate 2445e057df02SPaul Mullowney 24461cc06b55SBarry Smith .seealso: [](ch_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat` 2447e057df02SPaul Mullowney E*/ 24489371c9d4SSatish Balay typedef enum { 24499371c9d4SSatish Balay MAT_CUSPARSE_MULT_DIAG, 24509371c9d4SSatish Balay MAT_CUSPARSE_MULT_OFFDIAG, 24519371c9d4SSatish Balay MAT_CUSPARSE_MULT, 24529371c9d4SSatish Balay MAT_CUSPARSE_ALL 24539371c9d4SSatish Balay } MatCUSPARSEFormatOperation; 2454e057df02SPaul Mullowney 245510e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 245610e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2457e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat); 2458365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool); 24595f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 24605f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 24615f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **); 24625f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **); 24635f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **); 24645f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **); 24655f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **); 24665f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **); 2467637a0070SStefano Zampini 2468637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 2469637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 2470637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **); 2471637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **); 2472637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **); 2473637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **); 2474637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **); 2475637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **); 2476637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *); 2477d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *); 2478637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat); 24793d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *); 24802d1451d4SHong Zhang 24812d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 24822d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 24839ae82921SPaul Mullowney #endif 24849ae82921SPaul Mullowney 248547d993e7Ssuyashtn #ifdef PETSC_HAVE_HIP 248647d993e7Ssuyashtn /*E 24872ef1f0ffSBarry Smith MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU) 248847d993e7Ssuyashtn matrices. 248947d993e7Ssuyashtn 24902ef1f0ffSBarry Smith Values: 24912ef1f0ffSBarry Smith + `MAT_HIPSPARSE_CSR` - Compressed Sparse Row 24922ef1f0ffSBarry Smith . `MAT_HIPSPARSE_ELL` - Ellpack 24932ef1f0ffSBarry Smith - `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format 249447d993e7Ssuyashtn 249516a05f60SBarry Smith Level: intermediate 249616a05f60SBarry Smith 24971cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation` 249847d993e7Ssuyashtn E*/ 249947d993e7Ssuyashtn 250047d993e7Ssuyashtn typedef enum { 250147d993e7Ssuyashtn MAT_HIPSPARSE_CSR, 250247d993e7Ssuyashtn MAT_HIPSPARSE_ELL, 250347d993e7Ssuyashtn MAT_HIPSPARSE_HYB 250447d993e7Ssuyashtn } MatHIPSPARSEStorageFormat; 250547d993e7Ssuyashtn 250647d993e7Ssuyashtn /* these will be strings associated with enumerated type defined above */ 250747d993e7Ssuyashtn PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[]; 250847d993e7Ssuyashtn 250947d993e7Ssuyashtn /*E 25102ef1f0ffSBarry Smith MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU) 251147d993e7Ssuyashtn matrices whose operation should use a particular storage format. 251247d993e7Ssuyashtn 25132ef1f0ffSBarry Smith Values: 25142ef1f0ffSBarry Smith + `MAT_HIPSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()` 25154cf0e950SBarry Smith . `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()` 25162ef1f0ffSBarry Smith . `MAT_HIPSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()` 25172ef1f0ffSBarry Smith - `MAT_HIPSPARSE_ALL` - sets the storage format for all HIPSPARSE (GPU) matrices 25182ef1f0ffSBarry Smith 251916a05f60SBarry Smith Level: intermediate 252016a05f60SBarry Smith 25211cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat` 252247d993e7Ssuyashtn E*/ 252347d993e7Ssuyashtn typedef enum { 252447d993e7Ssuyashtn MAT_HIPSPARSE_MULT_DIAG, 252547d993e7Ssuyashtn MAT_HIPSPARSE_MULT_OFFDIAG, 252647d993e7Ssuyashtn MAT_HIPSPARSE_MULT, 252747d993e7Ssuyashtn MAT_HIPSPARSE_ALL 252847d993e7Ssuyashtn } MatHIPSPARSEFormatOperation; 252947d993e7Ssuyashtn 253047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 253147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 253247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat); 253347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool); 253447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 253547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 253647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **); 253747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **); 253847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **); 253947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **); 254047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **); 254147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **); 254247d993e7Ssuyashtn 254347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 254447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 254547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **); 254647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **); 254747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **); 254847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **); 254947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **); 255047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **); 255147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *); 255247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *); 255347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat); 25543d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *); 2555773bf0f6SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2556773bf0f6SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 255747d993e7Ssuyashtn #endif 255847d993e7Ssuyashtn 2559d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL) 2560d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2561d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2562d67ff14aSKarl Rupp #endif 2563d67ff14aSKarl Rupp 25644bf303faSJacob Faibussowitsch #if PetscDefined(HAVE_KOKKOS) 25654bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 25664bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 25674bf303faSJacob Faibussowitsch #endif 25684bf303faSJacob Faibussowitsch 256954efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW) 2570014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec); 2571014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec); 25722a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *); 257354efbe56SHong Zhang #endif 257454efbe56SHong Zhang 2575d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 2576d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2577d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt); 2578d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *); 2579d24d4204SJose E. Roman #endif 2580d24d4204SJose E. Roman 2581014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *); 2582014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *); 2583014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]); 2584014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]); 2585014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***); 2586014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *); 258719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType); 2588014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]); 2589014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat); 2590d8588912SDave May 25912ce66baaSPierre Jolivet PETSC_EXTERN PetscErrorCode MatFilter(Mat, PetscReal, PetscBool, PetscBool); 25922ce66baaSPierre Jolivet PETSC_DEPRECATED_FUNCTION(3, 20, 0, "MatFilter()", ) static inline PetscErrorCode MatChop(Mat A, PetscReal tol) 25932ce66baaSPierre Jolivet { 25942ce66baaSPierre Jolivet return MatFilter(A, tol, PETSC_FALSE, PETSC_FALSE); 25952ce66baaSPierre Jolivet } 2596e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *); 25974325cce7SMatthew G Knepley 2598b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **); 259953dd7562SDmitry Karpeev 2600c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat); 2601c094ef40SMatthew G. Knepley 260202218ef1SBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderMerge(Mat, Mat *); 2603539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *); 26041a2c6b5cSJunchao Zhang 26057ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *); 260672833a62Smarkadams4 2607e02fb3cdSMark Adams PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, PetscInt, PetscInt[], Mat *); 260858c11ad4SPierre Jolivet PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat, PetscBool); 2609ad6ad4e1SHansol Suh 2610d16ceb75SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *); 26113444e80cSBarry Smith 26123444e80cSBarry Smith PETSC_EXTERN PetscErrorCode MatSetHPL(Mat, int); 26133444e80cSBarry Smith #define PETSCBMHPL "hpl" 2614