12eac72dbSBarry Smith /* 22eac72dbSBarry Smith Include file for the matrix component of PETSc 32eac72dbSBarry Smith */ 426bd1501SBarry Smith #ifndef PETSCMAT_H 526bd1501SBarry Smith #define PETSCMAT_H 6ac09b921SBarry Smith 72c8e378dSBarry Smith #include <petscvec.h> 82eac72dbSBarry Smith 9ac09b921SBarry Smith /* SUBMANSEC = Mat */ 10ac09b921SBarry Smith 11d9274352SBarry Smith /*S 128f6c3df8SBarry Smith Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without 138f6c3df8SBarry Smith an explicit sparse representation (such as matrix-free operators) 142eac72dbSBarry Smith 15d91e6319SBarry Smith Level: beginner 16d91e6319SBarry Smith 172ef1f0ffSBarry Smith Note: 181cc06b55SBarry Smith See [](doc_matrix), [](ch_matrices) and `MatType` for available matrix types 192ef1f0ffSBarry Smith 201cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()` 21d9274352SBarry Smith S*/ 22d9274352SBarry Smith typedef struct _p_Mat *Mat; 23d9274352SBarry Smith 2476bdecfbSBarry Smith /*J 258f6c3df8SBarry Smith MatType - String with the name of a PETSc matrix type 26d9274352SBarry Smith 27d9274352SBarry Smith Level: beginner 28d9274352SBarry Smith 292ef1f0ffSBarry Smith Note: 302ef1f0ffSBarry Smith [](doc_matrix) for a table of available matrix types 312ef1f0ffSBarry Smith 321cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()` 3376bdecfbSBarry Smith J*/ 3419fd82e9SBarry Smith typedef const char *MatType; 35273d9f13SBarry Smith #define MATSAME "same" 365a11e1b2SBarry Smith #define MATMAIJ "maij" 37273d9f13SBarry Smith #define MATSEQMAIJ "seqmaij" 38273d9f13SBarry Smith #define MATMPIMAIJ "mpimaij" 3949bd79ccSDebojyoti Ghosh #define MATKAIJ "kaij" 4049bd79ccSDebojyoti Ghosh #define MATSEQKAIJ "seqkaij" 4149bd79ccSDebojyoti Ghosh #define MATMPIKAIJ "mpikaij" 42273d9f13SBarry Smith #define MATIS "is" 435a11e1b2SBarry Smith #define MATAIJ "aij" 44273d9f13SBarry Smith #define MATSEQAIJ "seqaij" 45273d9f13SBarry Smith #define MATMPIAIJ "mpiaij" 465a11e1b2SBarry Smith #define MATAIJCRL "aijcrl" 475a11e1b2SBarry Smith #define MATSEQAIJCRL "seqaijcrl" 485a11e1b2SBarry Smith #define MATMPIAIJCRL "mpiaijcrl" 499ae82921SPaul Mullowney #define MATAIJCUSPARSE "aijcusparse" 509ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE "seqaijcusparse" 519ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE "mpiaijcusparse" 5247d993e7Ssuyashtn #define MATAIJHIPSPARSE "aijhipsparse" 5347d993e7Ssuyashtn #define MATSEQAIJHIPSPARSE "seqaijhipsparse" 5447d993e7Ssuyashtn #define MATMPIAIJHIPSPARSE "mpiaijhipsparse" 558c3ff71bSJunchao Zhang #define MATAIJKOKKOS "aijkokkos" 568c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS "seqaijkokkos" 578c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS "mpiaijkokkos" 58d67ff14aSKarl Rupp #define MATAIJVIENNACL "aijviennacl" 59d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL "seqaijviennacl" 60d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL "mpiaijviennacl" 615a11e1b2SBarry Smith #define MATAIJPERM "aijperm" 625a11e1b2SBarry Smith #define MATSEQAIJPERM "seqaijperm" 635a11e1b2SBarry Smith #define MATMPIAIJPERM "mpiaijperm" 644dfdc2d9SRichard Tran Mills #define MATAIJSELL "aijsell" 654dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL "seqaijsell" 664dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL "mpiaijsell" 674a2a386eSRichard Tran Mills #define MATAIJMKL "aijmkl" 684a2a386eSRichard Tran Mills #define MATSEQAIJMKL "seqaijmkl" 694a2a386eSRichard Tran Mills #define MATMPIAIJMKL "mpiaijmkl" 70b5b72c8aSIrina Sokolova #define MATBAIJMKL "baijmkl" 71b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL "seqbaijmkl" 72b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL "mpibaijmkl" 73273d9f13SBarry Smith #define MATSHELL "shell" 74c1fff1c6SRichard Tran Mills #define MATCENTERING "centering" 755a11e1b2SBarry Smith #define MATDENSE "dense" 76637a0070SStefano Zampini #define MATDENSECUDA "densecuda" 7747d993e7Ssuyashtn #define MATDENSEHIP "densehip" 78209238afSKris Buschelman #define MATSEQDENSE "seqdense" 79bfc799aaSStefano Zampini #define MATSEQDENSECUDA "seqdensecuda" 8047d993e7Ssuyashtn #define MATSEQDENSEHIP "seqdensehip" 81273d9f13SBarry Smith #define MATMPIDENSE "mpidense" 82637a0070SStefano Zampini #define MATMPIDENSECUDA "mpidensecuda" 8347d993e7Ssuyashtn #define MATMPIDENSEHIP "mpidensehip" 84db31f6deSJed Brown #define MATELEMENTAL "elemental" 85d24d4204SJose E. Roman #define MATSCALAPACK "scalapack" 865a11e1b2SBarry Smith #define MATBAIJ "baij" 87273d9f13SBarry Smith #define MATSEQBAIJ "seqbaij" 88273d9f13SBarry Smith #define MATMPIBAIJ "mpibaij" 89273d9f13SBarry Smith #define MATMPIADJ "mpiadj" 905a11e1b2SBarry Smith #define MATSBAIJ "sbaij" 91273d9f13SBarry Smith #define MATSEQSBAIJ "seqsbaij" 92273d9f13SBarry Smith #define MATMPISBAIJ "mpisbaij" 93cebc7f6cSBarry Smith #define MATMFFD "mffd" 94c8a8475eSBarry Smith #define MATNORMAL "normal" 95c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN "normalh" 96ab92ecdeSBarry Smith #define MATLRC "lrc" 972a6744ebSBarry Smith #define MATSCATTER "scatter" 98421e10b8SBarry Smith #define MATBLOCKMAT "blockmat" 99793850ffSBarry Smith #define MATCOMPOSITE "composite" 1001f8c7532SHong Zhang #define MATFFT "fft" 1011f8c7532SHong Zhang #define MATFFTW "fftw" 102e133240eSMatthew G Knepley #define MATSEQCUFFT "seqcufft" 10347d993e7Ssuyashtn #define MATSEQHIPFFT "seqhipfft" 104edd03b47SJacob Faibussowitsch #define MATTRANSPOSEMAT PETSC_DEPRECATED_MACRO(3, 18, 0, "MATTRANSPOSEVIRTUAL", ) "transpose" 105013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL "transpose" 106013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose" 10772ca8751SBarry Smith #define MATSCHURCOMPLEMENT "schurcomplement" 1081d6018f0SLisandro Dalcin #define MATPYTHON "python" 10963c07aadSStefano Zampini #define MATHYPRE "hypre" 110f91d8e95SBarry Smith #define MATHYPRESTRUCT "hyprestruct" 111a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT "hypresstruct" 112ee1cef2cSJed Brown #define MATSUBMATRIX "submatrix" 1132c0dbf93SJed Brown #define MATLOCALREF "localref" 114d8588912SDave May #define MATNEST "nest" 115c094ef40SMatthew G. Knepley #define MATPREALLOCATOR "preallocator" 116d4002b98SHong Zhang #define MATSELL "sell" 117d4002b98SHong Zhang #define MATSEQSELL "seqsell" 118d4002b98SHong Zhang #define MATMPISELL "mpisell" 1192d1451d4SHong Zhang #define MATSELLCUDA "sellcuda" 1202d1451d4SHong Zhang #define MATSEQSELLCUDA "seqsellcuda" 1212d1451d4SHong Zhang #define MATMPISELLCUDA "mpisellcuda" 122a3b2e22bSHong Zhang #define MATDUMMY "dummy" 123cd929ea3SAlp Dener #define MATLMVM "lmvm" 12478e4361aSAlp Dener #define MATLMVMDFP "lmvmdfp" 12578e4361aSAlp Dener #define MATLMVMBFGS "lmvmbfgs" 12678e4361aSAlp Dener #define MATLMVMSR1 "lmvmsr1" 127864588a7SAlp Dener #define MATLMVMBROYDEN "lmvmbroyden" 128864588a7SAlp Dener #define MATLMVMBADBROYDEN "lmvmbadbroyden" 129864588a7SAlp Dener #define MATLMVMSYMBROYDEN "lmvmsymbroyden" 130864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN "lmvmsymbadbroyden" 131864588a7SAlp Dener #define MATLMVMDIAGBROYDEN "lmvmdiagbroyden" 1323423f386SBarry Smith #define MATCONSTANTDIAGONAL "constantdiagonal" 133345a4b08SToby Isaac #define MATDIAGONAL "diagonal" 134c7a4214aSPierre Jolivet #define MATHTOOL "htool" 13553022affSStefano Zampini #define MATH2OPUS "h2opus" 136773941d6SBarry Smith 13776bdecfbSBarry Smith /*J 13816a05f60SBarry Smith MatSolverType - String with the name of a PETSc factorization based matrix solver type. 1399989ab13SBarry Smith 140c2b89b5dSBarry Smith For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc 1419989ab13SBarry Smith 1429989ab13SBarry Smith Level: beginner 1439989ab13SBarry Smith 1442ef1f0ffSBarry Smith Note: 14516a05f60SBarry Smith `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as 14616a05f60SBarry Smith a ./configure option to install them 147c7ccbb75SBarry Smith 1481cc06b55SBarry Smith .seealso: [](sec_matfactor), [](ch_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()` 14976bdecfbSBarry Smith J*/ 150ea799195SBarry Smith typedef const char *MatSolverType; 1512692d6eeSBarry Smith #define MATSOLVERSUPERLU "superlu" 1522692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST "superlu_dist" 15308f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK "strumpack" 1542692d6eeSBarry Smith #define MATSOLVERUMFPACK "umfpack" 15520db9a53SJed Brown #define MATSOLVERCHOLMOD "cholmod" 156d89f5e7aSBarry Smith #define MATSOLVERKLU "klu" 157d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL "elemental" 158d24d4204SJose E. Roman #define MATSOLVERSCALAPACK "scalapack" 1592692d6eeSBarry Smith #define MATSOLVERESSL "essl" 1602692d6eeSBarry Smith #define MATSOLVERLUSOL "lusol" 1612692d6eeSBarry Smith #define MATSOLVERMUMPS "mumps" 162d615f992SSatish Balay #define MATSOLVERMKL_PARDISO "mkl_pardiso" 163d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO "mkl_cpardiso" 1642692d6eeSBarry Smith #define MATSOLVERPASTIX "pastix" 1652692d6eeSBarry Smith #define MATSOLVERMATLAB "matlab" 1662692d6eeSBarry Smith #define MATSOLVERPETSC "petsc" 1672692d6eeSBarry Smith #define MATSOLVERBAS "bas" 1689ae82921SPaul Mullowney #define MATSOLVERCUSPARSE "cusparse" 169bfc799aaSStefano Zampini #define MATSOLVERCUDA "cuda" 17047d993e7Ssuyashtn #define MATSOLVERHIPSPARSE "hipsparse" 17147d993e7Ssuyashtn #define MATSOLVERHIP "hip" 172930e68a5SMark Adams #define MATSOLVERKOKKOS "kokkos" 173a2fc1e05SToby Isaac #define MATSOLVERSPQR "spqr" 174c0cdd4a1SDahai Guo 175b24902e0SBarry Smith /*E 176b24902e0SBarry Smith MatFactorType - indicates what type of factorization is requested 177b24902e0SBarry Smith 1782ef1f0ffSBarry Smith Values: 1792ef1f0ffSBarry Smith + `MAT_FACTOR_LU` - LU factorization 1802ef1f0ffSBarry Smith . `MAT_FACTOR_CHOLESKY` - Cholesky factorization 1812ef1f0ffSBarry Smith . `MAT_FACTOR_ILU` - ILU factorization 1822ef1f0ffSBarry Smith . `MAT_FACTOR_ICC` - incomplete Cholesky factorization 1832ef1f0ffSBarry Smith . `MAT_FACTOR_ILUDT` - ILU factorization with drop tolerance 1842ef1f0ffSBarry Smith - `MAT_FACTOR_QR` - QR factorization 185b24902e0SBarry Smith 18616a05f60SBarry Smith Level: beginner 18716a05f60SBarry Smith 1881cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()` 189b24902e0SBarry Smith E*/ 1909371c9d4SSatish Balay typedef enum { 1919371c9d4SSatish Balay MAT_FACTOR_NONE, 1929371c9d4SSatish Balay MAT_FACTOR_LU, 1939371c9d4SSatish Balay MAT_FACTOR_CHOLESKY, 1949371c9d4SSatish Balay MAT_FACTOR_ILU, 1959371c9d4SSatish Balay MAT_FACTOR_ICC, 1969371c9d4SSatish Balay MAT_FACTOR_ILUDT, 1979371c9d4SSatish Balay MAT_FACTOR_QR, 1989371c9d4SSatish Balay MAT_FACTOR_NUM_TYPES 1999371c9d4SSatish Balay } MatFactorType; 200014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[]; 201e92e720dSBarry Smith 202ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *); 203ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *); 204f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *); 205edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 15, 0, "MatFactorGetCanUseOrdering()", ) static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b) 206d71ae5a4SJacob Faibussowitsch { 2079371c9d4SSatish Balay return MatFactorGetCanUseOrdering(A, b); 2089371c9d4SSatish Balay } 209ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *); 210014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *); 2117abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType); 2122430ea28SJose E. Roman PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatSolverFunction)(Mat, MatFactorType, Mat *); 2132430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFunction); 2142430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFunction *); 215edd03b47SJacob Faibussowitsch typedef MatSolverType MatSolverPackage PETSC_DEPRECATED_TYPEDEF(3, 9, 0, "MatSolverType", ); 216edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeRegister()", ) static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFunction f) 217d71ae5a4SJacob Faibussowitsch { 2189371c9d4SSatish Balay return MatSolverTypeRegister(stype, mtype, ftype, f); 2199371c9d4SSatish Balay } 220edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeGet()", ) static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFunction *f) 221d71ae5a4SJacob Faibussowitsch { 2229371c9d4SSatish Balay return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f); 2239371c9d4SSatish Balay } 2249989ab13SBarry Smith 2254222ddf1SHong Zhang /*E 2264222ddf1SHong Zhang MatProductType - indicates what type of matrix product is requested 2274222ddf1SHong Zhang 2282ef1f0ffSBarry Smith Values: 2292ef1f0ffSBarry Smith + `MATPRODUCT_AB` - product of two matrices 2302ef1f0ffSBarry Smith . `MATPRODUCT_AtB` - product of the transpose of a given matrix with a matrix 2312ef1f0ffSBarry Smith . `MATPRODUCT_ABt` - product of a matrix with the transpose of another given matrix 2322ef1f0ffSBarry Smith . `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself 2332ef1f0ffSBarry Smith . `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix 2342ef1f0ffSBarry Smith - `MATPRODUCT_ABC` - the product of three matrices 2352ef1f0ffSBarry Smith 23616a05f60SBarry Smith Level: beginner 23716a05f60SBarry Smith 2381cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatProductSetType()` 2394222ddf1SHong Zhang E*/ 2409371c9d4SSatish Balay typedef enum { 2419371c9d4SSatish Balay MATPRODUCT_UNSPECIFIED = 0, 2429371c9d4SSatish Balay MATPRODUCT_AB, 2439371c9d4SSatish Balay MATPRODUCT_AtB, 2449371c9d4SSatish Balay MATPRODUCT_ABt, 2459371c9d4SSatish Balay MATPRODUCT_PtAP, 2469371c9d4SSatish Balay MATPRODUCT_RARt, 2479371c9d4SSatish Balay MATPRODUCT_ABC 2489371c9d4SSatish Balay } MatProductType; 249544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[]; 2504222ddf1SHong Zhang 2514222ddf1SHong Zhang /*J 2524222ddf1SHong Zhang MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation 2534222ddf1SHong Zhang 2544222ddf1SHong Zhang Level: beginner 2554222ddf1SHong Zhang 2561cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType` 2574222ddf1SHong Zhang J*/ 2584222ddf1SHong Zhang typedef const char *MatProductAlgorithm; 2593e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT "default" 2603e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED "sorted" 2613e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE "scalable" 2623e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST "scalable_fast" 2633e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP "heap" 2643e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP "btheap" 2653e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED "llcondensed" 2663e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE "rowmerge" 2673e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT "outerproduct" 2683e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB "at*b" 2693e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP "rap" 2703e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE "nonscalable" 2713e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI "seqmpi" 2723e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND "backend" 2733e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING "overlapping" 2743e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED "merged" 2753e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE "allatonce" 2763e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged" 2773e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV "allgatherv" 2783e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC "cyclic" 2793e662e0bSHong Zhang #if defined(PETSC_HAVE_HYPRE) 2803e662e0bSHong Zhang #define MATPRODUCTALGORITHMHYPRE "hypre" 2813e662e0bSHong Zhang #endif 2824222ddf1SHong Zhang 2834222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *); 2844222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat); 2854222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType); 2864222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm); 2874222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal); 2884222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat); 2894222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat); 2904222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat); 2914222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat); 2924417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat); 2936718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer); 294c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *); 295c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *); 2964222ddf1SHong Zhang 297c06d978dSMatthew Knepley /* Logging support */ 2980700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */ 299014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID; 300335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID; 301014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID; 302014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID; 303014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID; 304014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID; 305014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID; 306014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID; 307c06d978dSMatthew Knepley 308ceb03754SKris Buschelman /*E 3092ef1f0ffSBarry Smith MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions 310cf37664fSBarry Smith are to be reused to store the new matrix values. 311cf37664fSBarry Smith 3122ef1f0ffSBarry Smith Values: 3132ef1f0ffSBarry Smith + `MAT_INITIAL_MATRIX` - create a new matrix 3142ef1f0ffSBarry Smith . `MAT_REUSE_MATRIX` - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX` 3152ef1f0ffSBarry Smith . `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions) 3162ef1f0ffSBarry Smith - `MAT_IGNORE_MATRIX` - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions) 317ceb03754SKris Buschelman 318ceb03754SKris Buschelman Level: beginner 319ceb03754SKris Buschelman 3201cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()` 321ceb03754SKris Buschelman E*/ 3229371c9d4SSatish Balay typedef enum { 3239371c9d4SSatish Balay MAT_INITIAL_MATRIX, 3249371c9d4SSatish Balay MAT_REUSE_MATRIX, 3259371c9d4SSatish Balay MAT_IGNORE_MATRIX, 3269371c9d4SSatish Balay MAT_INPLACE_MATRIX 3279371c9d4SSatish Balay } MatReuse; 328ceb03754SKris Buschelman 3295494a064SHong Zhang /*E 3302ef1f0ffSBarry Smith MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()` 3312ef1f0ffSBarry Smith include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`. 3325494a064SHong Zhang 3332ef1f0ffSBarry Smith Level: developer 3345494a064SHong Zhang 3352ef1f0ffSBarry Smith Values: 3362ef1f0ffSBarry Smith + `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values 3372ef1f0ffSBarry Smith - `MAT_GET_VALUES` - copy the matrix values 3382ef1f0ffSBarry Smith 3392ef1f0ffSBarry Smith Developer Note: 3402ef1f0ffSBarry Smith Why is not just a boolean used for this information? 3412ef1f0ffSBarry Smith 3421cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()` 3435494a064SHong Zhang E*/ 3449371c9d4SSatish Balay typedef enum { 3459371c9d4SSatish Balay MAT_DO_NOT_GET_VALUES, 3469371c9d4SSatish Balay MAT_GET_VALUES 3479371c9d4SSatish Balay } MatCreateSubMatrixOption; 3485494a064SHong Zhang 349607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void); 350c06d978dSMatthew Knepley 351014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *); 35277433607SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFromOptions(MPI_Comm, const char *, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 353014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt); 35419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType); 3550d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *); 3560d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType); 357014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat); 358fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]); 359bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat)); 36023bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]); 361014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]); 36226cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]); 36326cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]); 364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]); 365014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]); 36684d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool); 367f69a0ea3SMatthew Knepley 368140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList; 369140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList; 370140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList; 37128988994SBarry Smith 3723b224e63SBarry Smith /*E 373aa6c7ce3SBarry Smith MatStructure - Indicates if two matrices have the same nonzero structure 3743b224e63SBarry Smith 3752ef1f0ffSBarry Smith Values: 3762ef1f0ffSBarry Smith + `SAME_NONZERO_PATTERN` - the two matrices have identical nonzero patterns 3772ef1f0ffSBarry Smith . `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns 3782ef1f0ffSBarry Smith . `SUBSET_NONZERO_PATTERN` - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix 3792ef1f0ffSBarry Smith - `UNKNOWN_NONZERO_PATTERN` - there is no known relationship between the nonzero patterns. In this case the implementations 3802ef1f0ffSBarry Smith may try to detect a relationship to optimize the operation 381531d0c6aSBarry Smith 38216a05f60SBarry Smith Level: beginner 38316a05f60SBarry Smith 3841cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()` 3853b224e63SBarry Smith E*/ 3869371c9d4SSatish Balay typedef enum { 3879371c9d4SSatish Balay DIFFERENT_NONZERO_PATTERN, 3889371c9d4SSatish Balay SUBSET_NONZERO_PATTERN, 3899371c9d4SSatish Balay SAME_NONZERO_PATTERN, 3909371c9d4SSatish Balay UNKNOWN_NONZERO_PATTERN 3919371c9d4SSatish Balay } MatStructure; 392d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[]; 3933b224e63SBarry Smith 3949779e05dSSatish Balay #if defined PETSC_HAVE_MKL_SPARSE 395ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 396ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 39780095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 398ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 39980095d54SIrina Sokolova #endif 400cd929ea3SAlp Dener 401d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 402d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 403d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]); 404d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 40507e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *); 40607e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *); 40707e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *); 40807e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt); 409b921024eSHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *); 41080095d54SIrina Sokolova 411014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 412014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 413014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 414014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 415014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 4168f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 4176a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]); 418014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *); 4193b00a383SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *); 4203b00a383SHong Zhang 421014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 422014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 423014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 4247e8381f9SStefano Zampini 425e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]); 42682a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]); 4277e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode); 428d21a29f3SJed Brown 429014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *); 430014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 431d21a29f3SJed Brown 432014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 433014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 43438f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 435014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 4364cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]); 437dfb205c3SBarry Smith 438014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *); 439c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *); 440014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *); 441c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *); 442986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *); 443267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *); 444bcf2175cSMatthew Knepley PETSC_EXTERN PetscErrorCode MatLRCSetMats(Mat, Mat, Mat, Vec, Mat); 445c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *); 446014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 447014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 448c0cdd4a1SDahai Guo 449014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *); 450014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter); 451014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *); 452014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *); 453014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat); 454014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat); 4559371c9d4SSatish Balay typedef enum { 4569371c9d4SSatish Balay MAT_COMPOSITE_MERGE_RIGHT, 4579371c9d4SSatish Balay MAT_COMPOSITE_MERGE_LEFT 4589371c9d4SSatish Balay } MatCompositeMergeType; 4598c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType); 460014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *); 4619371c9d4SSatish Balay typedef enum { 4629371c9d4SSatish Balay MAT_COMPOSITE_ADDITIVE, 4639371c9d4SSatish Balay MAT_COMPOSITE_MULTIPLICATIVE 4649371c9d4SSatish Balay } MatCompositeType; 465014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType); 4666dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *); 4673b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure); 4683b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *); 4696d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *); 4708b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *); 47103049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *); 4726d7c1e57SBarry Smith 47319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *); 474014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *); 475dedccee8SHong Zhang 476014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *); 4778060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *); 478d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *); 47906511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *); 480fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *); 48165f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *); 48254e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *); 48354e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS); 484014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *); 4853423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *); 486345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatCreateDiagonal(Vec, Mat *); 487345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetDiagonal(Mat, Vec *); 488345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreDiagonal(Mat, Vec *); 489345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetInverseDiagonal(Mat, Vec *); 490345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreInverseDiagonal(Mat, Vec *); 4911472f72bSBarry Smith 492978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE) 493d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 494978814f1SStefano Zampini #endif 495978814f1SStefano Zampini 496014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]); 497ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]); 4981d6018f0SLisandro Dalcin 499846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat); 500014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat); 501014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *); 502e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *); 50321c89e3eSBarry Smith 504014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat); 505014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat); 506014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat); 507014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *); 508014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *); 509713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **); 5100da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *); 511479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat); 5128a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *); 51320c04d79SPierre Jolivet PETSC_EXTERN PetscErrorCode MatComputeVariableBlockEnvelope(Mat); 51499cafbc1SBarry Smith 515014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 5168a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode); 517014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 518014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]); 519014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]); 520014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]); 52173a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom); 52284cb2905SBarry Smith 5232ef4de8bSBarry Smith /*S 5242ef1f0ffSBarry Smith MatStencil - Data structure (C struct) for storing information about rows and 5252ef1f0ffSBarry Smith columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()` 52662ef0227SBarry Smith 5272ef1f0ffSBarry Smith Level: beginner 5282ef1f0ffSBarry Smith 5292ef1f0ffSBarry Smith Notes: 53062ef0227SBarry Smith The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored). 53187497f52SBarry Smith The c represents the the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored. 53262ef0227SBarry Smith 53387497f52SBarry Smith For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`. 534be479b30SJed Brown 5352ef1f0ffSBarry Smith For staggered grids, see `DMStagStencil` 5362ef4de8bSBarry Smith 5372ef1f0ffSBarry Smith Fortran Note: 5382ef1f0ffSBarry Smith See `MatSetValuesStencil()` for details. 5392ef4de8bSBarry Smith 5401cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`, 5412ef1f0ffSBarry Smith `DMStagStencil` 5422ef4de8bSBarry Smith S*/ 543435da068SBarry Smith typedef struct { 544c1ac3661SBarry Smith PetscInt k, j, i, c; 545435da068SBarry Smith } MatStencil; 5462ef4de8bSBarry Smith 547014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 548014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 549014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt); 550435da068SBarry Smith 551d91e6319SBarry Smith /*E 5522ef1f0ffSBarry Smith MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use 553d91e6319SBarry Smith 5542ef1f0ffSBarry Smith Values: 5552ef1f0ffSBarry Smith + `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix 5562ef1f0ffSBarry Smith - `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted 5572ef1f0ffSBarry Smith 55816a05f60SBarry Smith Level: beginner 55916a05f60SBarry Smith 5601cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()` 561d91e6319SBarry Smith E*/ 5629371c9d4SSatish Balay typedef enum { 5639371c9d4SSatish Balay MAT_FLUSH_ASSEMBLY = 1, 5649371c9d4SSatish Balay MAT_FINAL_ASSEMBLY = 0 5659371c9d4SSatish Balay } MatAssemblyType; 566014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType); 567014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType); 568014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *); 5694f9c727eSBarry Smith 570d91e6319SBarry Smith /*E 5712ef1f0ffSBarry Smith MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage 572d91e6319SBarry Smith 573d91e6319SBarry Smith Level: beginner 574d91e6319SBarry Smith 5752ef1f0ffSBarry Smith Note: 5762ef1f0ffSBarry Smith See `MatSetOption()` for the use of the options 5772ef1f0ffSBarry Smith 5782ef1f0ffSBarry Smith Developer Note: 57995452b02SPatrick Sanan Entries that are negative need not be called collectively by all processes. 580382164b0SBarry Smith 5811cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetOption()` 582d91e6319SBarry Smith E*/ 5839371c9d4SSatish Balay typedef enum { 5849371c9d4SSatish Balay MAT_OPTION_MIN = -3, 585c5e4d11fSDmitry Karpeev MAT_UNUSED_NONZERO_LOCATION_ERR = -2, 58692d4d306SBarry Smith MAT_ROW_ORIENTED = -1, 587382164b0SBarry Smith MAT_SYMMETRIC = 1, 588382164b0SBarry Smith MAT_STRUCTURALLY_SYMMETRIC = 2, 5898c78258cSHong Zhang MAT_FORCE_DIAGONAL_ENTRIES = 3, 590382164b0SBarry Smith MAT_IGNORE_OFF_PROC_ENTRIES = 4, 591382164b0SBarry Smith MAT_USE_HASH_TABLE = 5, 592382164b0SBarry Smith MAT_KEEP_NONZERO_PATTERN = 6, 593382164b0SBarry Smith MAT_IGNORE_ZERO_ENTRIES = 7, 594382164b0SBarry Smith MAT_USE_INODES = 8, 595382164b0SBarry Smith MAT_HERMITIAN = 9, 596382164b0SBarry Smith MAT_SYMMETRY_ETERNAL = 10, 597c5e4d11fSDmitry Karpeev MAT_NEW_NONZERO_LOCATION_ERR = 11, 598382164b0SBarry Smith MAT_IGNORE_LOWER_TRIANGULAR = 12, 599382164b0SBarry Smith MAT_ERROR_LOWER_TRIANGULAR = 13, 600382164b0SBarry Smith MAT_GETROW_UPPERTRIANGULAR = 14, 601382164b0SBarry Smith MAT_SPD = 15, 60292d4d306SBarry Smith MAT_NO_OFF_PROC_ZERO_ROWS = 16, 60392d4d306SBarry Smith MAT_NO_OFF_PROC_ENTRIES = 17, 60492d4d306SBarry Smith MAT_NEW_NONZERO_LOCATIONS = 18, 605c5e4d11fSDmitry Karpeev MAT_NEW_NONZERO_ALLOCATION_ERR = 19, 606c5e4d11fSDmitry Karpeev MAT_SUBSET_OFF_PROC_ENTRIES = 20, 607c10200c1SHong Zhang MAT_SUBMAT_SINGLEIS = 21, 608957cac9fSHong Zhang MAT_STRUCTURE_ONLY = 22, 609071fcb05SBarry Smith MAT_SORTED_FULL = 23, 6101a2c6b5cSJunchao Zhang MAT_FORM_EXPLICIT_TRANSPOSE = 24, 611b94d7dedSBarry Smith MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25, 612b94d7dedSBarry Smith MAT_SPD_ETERNAL = 26, 6139371c9d4SSatish Balay MAT_OPTION_MAX = 27 6149371c9d4SSatish Balay } MatOption; 615e057df02SPaul Mullowney 6160f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions; 617014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOption(Mat, MatOption, PetscBool); 6187d68702bSBarry Smith PETSC_EXTERN PetscErrorCode MatGetOption(Mat, MatOption, PetscBool *); 619856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode MatPropagateSymmetryOptions(Mat, Mat); 62019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetType(Mat, MatType *); 62184cb2905SBarry Smith 622014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 623014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 624014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 625014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowUpperTriangular(Mat); 626014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowUpperTriangular(Mat); 627014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnVector(Mat, Vec, PetscInt); 6288c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetArray(Mat, PetscScalar *[]); 6298f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]); 630d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]); 6318c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArray(Mat, PetscScalar *[]); 6328f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]); 633d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]); 63421e72a00SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *); 635bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 6364099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetType(Mat, MatType); 637ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatSeqAIJKron(Mat, Mat, MatReuse, Mat *); 638388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *)); 6394099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList; 640cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJGetArray(Mat, PetscScalar *[]); 641cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJRestoreArray(Mat, PetscScalar *[]); 6428397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJGetArray(Mat, PetscScalar *[]); 6438397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]); 6448c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArray(Mat, PetscScalar *[]); 6458c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArray(Mat, PetscScalar *[]); 646d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDensePlaceArray(Mat, const PetscScalar[]); 647d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseReplaceArray(Mat, const PetscScalar[]); 648d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseResetArray(Mat); 6498572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArrayRead(Mat, const PetscScalar *[]); 6508572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayRead(Mat, const PetscScalar *[]); 6516947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetArrayWrite(Mat, PetscScalar *[]); 6526947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWrite(Mat, PetscScalar *[]); 653cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *); 654cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]); 655cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *); 656cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]); 657cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *); 658cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]); 659014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSize(Mat, PetscInt *); 660014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSize(Mat, PetscInt); 661014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSizes(Mat, PetscInt *, PetscInt *); 662014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizes(Mat, PetscInt, PetscInt); 66333d57670SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizesFromMats(Mat, Mat, Mat); 6640da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetVariableBlockSizes(Mat, PetscInt, PetscInt *); 6650da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt **); 6660da83c2eSBarry Smith 66786aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]); 66886aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]); 6696947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *); 6706947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *); 6716947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *); 6726947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *); 6736947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *); 6746947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *); 675a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 6765ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *); 6771620fd73SBarry Smith 678014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec); 679014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec); 680014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec); 681014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec); 682014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec); 683014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *); 684014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *); 685014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec); 686014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec); 687014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat); 688bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat); 689eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat); 690f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec); 691f5edf698SHong Zhang 692d91e6319SBarry Smith /*E 693d91e6319SBarry Smith MatDuplicateOption - Indicates if a duplicated sparse matrix should have 694d91e6319SBarry Smith its numerical values copied over or just its nonzero structure. 695d91e6319SBarry Smith 6962ef1f0ffSBarry Smith Values: 6972ef1f0ffSBarry Smith + `MAT_DO_NOT_COPY_VALUES` - Create a matrix using the same nonzero pattern as the original matrix, 6982ef1f0ffSBarry Smith with zeros for the numerical values 6992ef1f0ffSBarry Smith . `MAT_COPY_VALUES` - Create a matrix with the same nonzero pattern as the original matrix 7002ef1f0ffSBarry Smith and with the same numerical values. 7012ef1f0ffSBarry Smith - `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix 7022ef1f0ffSBarry Smith and does not copy it, using zeros for the numerical values. The parent and 7032ef1f0ffSBarry Smith child matrices will share their index (i and j) arrays, and you cannot 7042ef1f0ffSBarry Smith insert new nonzero entries into either matrix 7050018da39SRichard Tran Mills 70616a05f60SBarry Smith Level: beginner 70716a05f60SBarry Smith 70887497f52SBarry Smith Note: 70987497f52SBarry Smith Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in 71087497f52SBarry Smith this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified. 71170dcbbb9SBarry Smith 7121cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicate()` 713d91e6319SBarry Smith E*/ 7149371c9d4SSatish Balay typedef enum { 7159371c9d4SSatish Balay MAT_DO_NOT_COPY_VALUES, 7169371c9d4SSatish Balay MAT_COPY_VALUES, 7179371c9d4SSatish Balay MAT_SHARE_NONZERO_PATTERN 7189371c9d4SSatish Balay } MatDuplicateOption; 7192e8a6d31SBarry Smith 72019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *); 721014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *); 72294a9d846SBarry Smith 723014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure); 724014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer); 725014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *); 726014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *); 727014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *); 728014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *); 729014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *); 730b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *); 731b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *); 732014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *); 733014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer); 7347b80b807SBarry Smith 7351a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7361a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7371a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7381a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 739d4fbbf0eSBarry Smith 740d91e6319SBarry Smith /*S 74187497f52SBarry Smith MatInfo - Context of matrix information, used with `MatGetInfo()` 742d91e6319SBarry Smith 743d91e6319SBarry Smith Level: intermediate 744d91e6319SBarry Smith 7452ef1f0ffSBarry Smith Fortran Note: 7462ef1f0ffSBarry Smith Information is stored as a double-precision array of dimension `MAT_INFO_SIZE` 7472ef1f0ffSBarry Smith 7481cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetInfo()`, `MatInfoType` 749d91e6319SBarry Smith S*/ 7504e220ebcSLois Curfman McInnes typedef struct { 751b0a32e0cSBarry Smith PetscLogDouble block_size; /* block size */ 752b0a32e0cSBarry Smith PetscLogDouble nz_allocated, nz_used, nz_unneeded; /* number of nonzeros */ 753b0a32e0cSBarry Smith PetscLogDouble memory; /* memory allocated */ 754b0a32e0cSBarry Smith PetscLogDouble assemblies; /* number of matrix assemblies called */ 755b0a32e0cSBarry Smith PetscLogDouble mallocs; /* number of mallocs during MatSetValues() */ 756b0a32e0cSBarry Smith PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */ 757b0a32e0cSBarry Smith PetscLogDouble factor_mallocs; /* number of mallocs during factorization */ 7584e220ebcSLois Curfman McInnes } MatInfo; 7594e220ebcSLois Curfman McInnes 760d9274352SBarry Smith /*E 761d9274352SBarry Smith MatInfoType - Indicates if you want information about the local part of the matrix, 762d9274352SBarry Smith the entire parallel matrix or the maximum over all the local parts. 763d9274352SBarry Smith 7642ef1f0ffSBarry Smith Values: 7652ef1f0ffSBarry Smith + `MAT_LOCAL` - values for each MPI process part of the matrix 7662ef1f0ffSBarry Smith . `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes 7672ef1f0ffSBarry Smith - `MAT_GLOBAL_SUM` - sum of each value over all MPI processes 768d9274352SBarry Smith 76916a05f60SBarry Smith Level: beginner 77016a05f60SBarry Smith 7711cc06b55SBarry Smith .seealso: [](ch_matrices), `MatGetInfo()`, `MatInfo` 772d9274352SBarry Smith E*/ 7739371c9d4SSatish Balay typedef enum { 7749371c9d4SSatish Balay MAT_LOCAL = 1, 7759371c9d4SSatish Balay MAT_GLOBAL_MAX = 2, 7769371c9d4SSatish Balay MAT_GLOBAL_SUM = 3 7779371c9d4SSatish Balay } MatInfoType; 778014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *); 779014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec); 780014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]); 781014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]); 782014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]); 783014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]); 784014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec); 785014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *); 7867fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *); 7877fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat); 788014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *); 789014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *); 790014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec); 791014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode); 792a52676ecSHong Zhang 793014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *); 794014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *); 795014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *); 796014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 797014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 798e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 799e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 800a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 801a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 802cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 8034222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 804447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 80586919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *); 8067b80b807SBarry Smith 807014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *); 808014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *); 809857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *); 810857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *); 811857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *); 812857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *); 813857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *); 814857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *); 815857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *); 816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat); 8171b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat); 818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec); 820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec); 8247b80b807SBarry Smith 825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *); 826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *); 827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *); 828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **); 829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *); 830014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **); 831566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *); 8325ef9f2a5SBarry Smith 8337dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 834edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrices()", ) static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 835d71ae5a4SJacob Faibussowitsch { 8369371c9d4SSatish Balay return MatCreateSubMatrices(mat, n, irow, icol, scall, submat); 8379371c9d4SSatish Balay } 8387dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 839edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatricesMPI()", ) static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 840d71ae5a4SJacob Faibussowitsch { 8419371c9d4SSatish Balay return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat); 8429371c9d4SSatish Balay } 843014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]); 844df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]); 8457dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *); 846edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrix()", ) static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat) 847d71ae5a4SJacob Faibussowitsch { 8489371c9d4SSatish Balay return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat); 8499371c9d4SSatish Balay } 850014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *); 851014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *); 852014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *); 853014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *); 8547b80b807SBarry Smith 855014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *); 856014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *); 857014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat); 858014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *); 8598a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *); 860014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *); 861ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *); 862f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *); 863014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *); 864014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]); 8658efafbd8SBarry Smith 866014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt); 867aa1e27eaSFande Kong PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov); 868d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool); 8697b80b807SBarry Smith 870014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 87122440eb1SKris Buschelman 8727bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 8732df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 8747bab7c10SHong Zhang 875014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *); 876014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *); 87722440eb1SKris Buschelman 878014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 879014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *); 880bc011b1eSHong Zhang 881014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure); 882014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure); 8831c741599SHong Zhang 884014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar); 885014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar); 8867b80b807SBarry Smith 887014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping); 888014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 889a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *); 89081fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout); 891014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 892014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 893014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 894014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 895e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 896014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 897014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 898052efed2SBarry Smith 899014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt); 900014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *); 90190f02eecSBarry Smith 902014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec); 903014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec); 904014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec); 90530b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *); 90630b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *); 90730b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *); 9082a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *); 909edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 6, 0, "MatCreateVecs()", ) static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y) 910d71ae5a4SJacob Faibussowitsch { 9119371c9d4SSatish Balay return MatCreateVecs(mat, x, y); 9129371c9d4SSatish Balay } 91353cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *); 914014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *); 915014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *); 9163a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *); 9179c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *); 918bd481603SBarry Smith 919*c8d6c325SJunchao Zhang /*@C 9201620fd73SBarry Smith MatSetValue - Set a single entry into a matrix. 9211620fd73SBarry Smith 922e1c5b2e2SJose E. Roman This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()` 923e1c5b2e2SJose E. Roman MUST be called after all calls to `MatSetValue()` have been completed. 9241620fd73SBarry Smith 925e1c5b2e2SJose E. Roman Not Collective 926a9834a7dSSatish Balay 9271620fd73SBarry Smith Input Parameters: 928*c8d6c325SJunchao Zhang + mat - the matrix 92916a05f60SBarry Smith . i - the row location of the entry 93016a05f60SBarry Smith . j - the column location of the entry 93116a05f60SBarry Smith . va - the value to insert 93287497f52SBarry Smith - mode - either `INSERT_VALUES` or `ADD_VALUES` 9331620fd73SBarry Smith 9341620fd73SBarry Smith Level: beginner 9351620fd73SBarry Smith 9362ef1f0ffSBarry Smith Note: 9372ef1f0ffSBarry Smith For efficiency one should use `MatSetValues()` and set several values simultaneously. 9382ef1f0ffSBarry Smith 9391cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `InsertMode`, `MatGetValue()`, `MatSetValues()`, 9402ef1f0ffSBarry Smith `MatSetValueLocal()`, `MatSetValuesLocal()` 941*c8d6c325SJunchao Zhang @*/ 942*c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValue(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 943d71ae5a4SJacob Faibussowitsch { 944*c8d6c325SJunchao Zhang return MatSetValues(mat, 1, &i, 1, &j, &va, mode); 9459371c9d4SSatish Balay } 9461620fd73SBarry Smith 947e5e5a7b5SPatrick Sanan /*@C 948e5e5a7b5SPatrick Sanan MatGetValue - Gets a single value from a matrix 9491620fd73SBarry Smith 950e5e5a7b5SPatrick Sanan Not Collective; can only return a value owned by the given process 951e5e5a7b5SPatrick Sanan 952e5e5a7b5SPatrick Sanan Input Parameters: 953e5e5a7b5SPatrick Sanan + mat - the matrix 954e5e5a7b5SPatrick Sanan . row - the row location of the entry 955e5e5a7b5SPatrick Sanan - col - the column location of the entry 956e5e5a7b5SPatrick Sanan 957e5e5a7b5SPatrick Sanan Output Parameter: 958e5e5a7b5SPatrick Sanan . va - the value 959e5e5a7b5SPatrick Sanan 9602ef1f0ffSBarry Smith Level: advanced 9612ef1f0ffSBarry Smith 962e5e5a7b5SPatrick Sanan Notes: 9632ef1f0ffSBarry Smith The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd` before this call 9642ef1f0ffSBarry Smith 96587497f52SBarry Smith For efficiency one should use `MatGetValues()` and get several values simultaneously. 966e5e5a7b5SPatrick Sanan 96787497f52SBarry Smith See notes for `MatGetValues()`. 968e5e5a7b5SPatrick Sanan 9691cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()` 970e5e5a7b5SPatrick Sanan @*/ 971d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va) 972d71ae5a4SJacob Faibussowitsch { 9739371c9d4SSatish Balay return MatGetValues(mat, 1, &row, 1, &col, va); 9749371c9d4SSatish Balay } 975e5e5a7b5SPatrick Sanan 976*c8d6c325SJunchao Zhang /*@C 9772ef1f0ffSBarry Smith MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes. 978e5e5a7b5SPatrick Sanan 979e5e5a7b5SPatrick Sanan Not Collective 980e5e5a7b5SPatrick Sanan 981e5e5a7b5SPatrick Sanan Input Parameters: 982*c8d6c325SJunchao Zhang + mat - the matrix 98316a05f60SBarry Smith . i - the row location of the entry 98416a05f60SBarry Smith . j - the column location of the entry 98516a05f60SBarry Smith . va - the value to insert 98687497f52SBarry Smith - mode - either `INSERT_VALUES` or `ADD_VALUES` 987e5e5a7b5SPatrick Sanan 9882ef1f0ffSBarry Smith Level: intermediate 9892ef1f0ffSBarry Smith 990e5e5a7b5SPatrick Sanan Notes: 99187497f52SBarry Smith For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously. 992e5e5a7b5SPatrick Sanan 99387497f52SBarry Smith See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used. 994e5e5a7b5SPatrick Sanan 9951cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSetValue()`, `MatSetValuesLocal()` 996*c8d6c325SJunchao Zhang @*/ 997*c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValueLocal(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 998d71ae5a4SJacob Faibussowitsch { 999*c8d6c325SJunchao Zhang return MatSetValuesLocal(mat, 1, &i, 1, &j, &va, mode); 10009371c9d4SSatish Balay } 10011620fd73SBarry Smith 10021620fd73SBarry Smith /*MC 1003d0609cedSBarry Smith MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per 1004bd481603SBarry Smith row in a matrix providing the data that one can use to correctly preallocate the matrix. 1005bd481603SBarry Smith 1006bd481603SBarry Smith Synopsis: 1007aaa7dc30SBarry Smith #include <petscmat.h> 1008d0609cedSBarry Smith PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz) 1009bd481603SBarry Smith 1010d083f849SBarry Smith Collective 1011bd481603SBarry Smith 1012bd481603SBarry Smith Input Parameters: 1013bd481603SBarry Smith + comm - the communicator that will share the eventually allocated matrix 1014859fcb39SBarry Smith . nrows - the number of LOCAL rows in the matrix 1015859fcb39SBarry Smith - ncols - the number of LOCAL columns in the matrix 1016bd481603SBarry Smith 1017bd481603SBarry Smith Output Parameters: 1018bd481603SBarry Smith + dnz - the array that will be passed to the matrix preallocation routines 1019a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1020bd481603SBarry Smith 10212ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1022bd481603SBarry Smith 1023bd481603SBarry Smith Notes: 10242ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 10252ef1f0ffSBarry Smith the use of this routine 10262ef1f0ffSBarry Smith 1027d0609cedSBarry Smith This is a macro that handles its own error checking, it does not return an error code. 1028d0609cedSBarry Smith 10292ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1030bd481603SBarry Smith 10312ef1f0ffSBarry Smith Developer Note: 10322ef1f0ffSBarry Smith This is a MACRO not a function because it has a leading { that is closed by `PetscPreallocateFinalize()`. 1033bd481603SBarry Smith 10341cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1035db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 1036bd481603SBarry Smith M*/ 10379371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \ 10389371c9d4SSatish Balay do { \ 10393ba16761SJacob Faibussowitsch PetscInt __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \ 10403ba16761SJacob Faibussowitsch PetscInt PETSC_UNUSED __start; \ 10419566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \ 10429566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \ 10439371c9d4SSatish Balay __start = __end - __ncols; \ 10449371c9d4SSatish Balay (void)__start; \ 10459566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \ 10465f80ce2aSJacob Faibussowitsch __rstart -= __nrows 10477c922b88SBarry Smith 1048edd03b47SJacob Faibussowitsch #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateBegin()", ) MatPreallocateBegin(__VA_ARGS__) 1049d0609cedSBarry Smith 1050bd481603SBarry Smith /*MC 1051bd481603SBarry Smith MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1052bd481603SBarry Smith inserted using a local number of the rows and columns 1053bd481603SBarry Smith 1054bd481603SBarry Smith Synopsis: 1055aaa7dc30SBarry Smith #include <petscmat.h> 1056c1ac3661SBarry Smith PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1057bd481603SBarry Smith 1058bd481603SBarry Smith Not Collective 1059bd481603SBarry Smith 1060bd481603SBarry Smith Input Parameters: 1061784ac674SJed Brown + map - the row mapping from local numbering to global numbering 1062bd481603SBarry Smith . nrows - the number of rows indicated 10631d73ed98SBarry Smith . rows - the indices of the rows 1064784ac674SJed Brown . cmap - the column mapping from local to global numbering 1065bd481603SBarry Smith . ncols - the number of columns in the matrix 1066bd481603SBarry Smith . cols - the columns indicated 1067bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1068a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1069bd481603SBarry Smith 10702ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1071bd481603SBarry Smith 1072bd481603SBarry Smith Notes: 10732ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 10742ef1f0ffSBarry Smith the use of this routine 1075bd481603SBarry Smith 10762ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1077bd481603SBarry Smith 10781cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1079db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()` 1080bd481603SBarry Smith M*/ 108194bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 10829371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1083c4f061fbSSatish Balay 1084bd481603SBarry Smith /*MC 1085c1154cd5SBarry Smith MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1086c1154cd5SBarry Smith inserted using a local number of the rows and columns. This version removes any duplicate columns in cols 1087c1154cd5SBarry Smith 1088c1154cd5SBarry Smith Synopsis: 1089c1154cd5SBarry Smith #include <petscmat.h> 1090c1154cd5SBarry Smith PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1091c1154cd5SBarry Smith 1092c1154cd5SBarry Smith Not Collective 1093c1154cd5SBarry Smith 1094c1154cd5SBarry Smith Input Parameters: 1095c1154cd5SBarry Smith + map - the row mapping from local numbering to global numbering 1096c1154cd5SBarry Smith . nrows - the number of rows indicated 1097c1154cd5SBarry Smith . rows - the indices of the rows (these values are mapped to the global values) 1098c1154cd5SBarry Smith . cmap - the column mapping from local to global numbering 1099c1154cd5SBarry Smith . ncols - the number of columns in the matrix (this value will be changed if duplicate columns are found) 1100c1154cd5SBarry Smith . cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed) 1101c1154cd5SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1102a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1103c1154cd5SBarry Smith 11042ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1105c1154cd5SBarry Smith 1106c1154cd5SBarry Smith Notes: 11072ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11082ef1f0ffSBarry Smith the use of this routine 1109c1154cd5SBarry Smith 11102ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1111c1154cd5SBarry Smith 11121cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1113db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1114c1154cd5SBarry Smith M*/ 111594bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 11169371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1117c1154cd5SBarry Smith 1118c1154cd5SBarry Smith /*MC 1119d6e23781SBarry Smith MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1120bd481603SBarry Smith inserted using a local number of the rows and columns 1121bd481603SBarry Smith 1122bd481603SBarry Smith Synopsis: 1123aaa7dc30SBarry Smith #include <petscmat.h> 1124d6e23781SBarry Smith PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1125d6e23781SBarry Smith 1126d6e23781SBarry Smith Not Collective 1127d6e23781SBarry Smith 1128d6e23781SBarry Smith Input Parameters: 1129d6e23781SBarry Smith + map - the row mapping from local numbering to global numbering 1130d6e23781SBarry Smith . nrows - the number of rows indicated 1131d6e23781SBarry Smith . rows - the indices of the rows 1132d6e23781SBarry Smith . cmap - the column mapping from local to global numbering 1133d6e23781SBarry Smith . ncols - the number of columns in the matrix 1134d6e23781SBarry Smith . cols - the columns indicated 1135d6e23781SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1136a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1137d6e23781SBarry Smith 11382ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1139d6e23781SBarry Smith 1140d6e23781SBarry Smith Notes: 11412ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11422ef1f0ffSBarry Smith the use of this routine 1143d6e23781SBarry Smith 11442ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1145d6e23781SBarry Smith 11461cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1147db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()` 1148d6e23781SBarry Smith M*/ 114994bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 11509371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1151d6e23781SBarry Smith 1152d6e23781SBarry Smith /*MC 1153d6e23781SBarry Smith MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1154d6e23781SBarry Smith inserted using a local number of the rows and columns 1155d6e23781SBarry Smith 1156d6e23781SBarry Smith Synopsis: 1157d6e23781SBarry Smith #include <petscmat.h> 1158d6e23781SBarry Smith PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1159bd481603SBarry Smith 1160bd481603SBarry Smith Not Collective 1161bd481603SBarry Smith 1162bd481603SBarry Smith Input Parameters: 1163bd481603SBarry Smith + map - the mapping between local numbering and global numbering 1164bd481603SBarry Smith . nrows - the number of rows indicated 11651d73ed98SBarry Smith . rows - the indices of the rows 1166bd481603SBarry Smith . ncols - the number of columns in the matrix 1167bd481603SBarry Smith . cols - the columns indicated 1168bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1169a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1170bd481603SBarry Smith 11712ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1172bd481603SBarry Smith 1173bd481603SBarry Smith Notes: 11742ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11752ef1f0ffSBarry Smith the use of this routine 1176bd481603SBarry Smith 11772ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1178bd481603SBarry Smith 11791cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()` 1180db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1181bd481603SBarry Smith M*/ 118294bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \ 11839371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));) 1184e83a5d19SLisandro Dalcin 1185bd481603SBarry Smith /*MC 1186bd481603SBarry Smith MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1187bd481603SBarry Smith inserted using a local number of the rows and columns 1188bd481603SBarry Smith 1189bd481603SBarry Smith Synopsis: 1190aaa7dc30SBarry Smith #include <petscmat.h> 1191c1ac3661SBarry Smith PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1192bd481603SBarry Smith 1193bd481603SBarry Smith Not Collective 1194bd481603SBarry Smith 1195bd481603SBarry Smith Input Parameters: 119664075487SBarry Smith + row - the row 1197bd481603SBarry Smith . ncols - the number of columns in the matrix 1198a50f8bf6SHong Zhang - cols - the columns indicated 1199a50f8bf6SHong Zhang 1200a50f8bf6SHong Zhang Output Parameters: 1201a50f8bf6SHong Zhang + dnz - the array that will be passed to the matrix preallocation routines 1202a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1203bd481603SBarry Smith 12042ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1205bd481603SBarry Smith 1206bd481603SBarry Smith Notes: 12072ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12082ef1f0ffSBarry Smith the use of this routine 1209bd481603SBarry Smith 12102ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1211bd481603SBarry Smith 1212d0609cedSBarry Smith This is a MACRO not a function because it uses variables declared in MatPreallocateBegin(). 12131620fd73SBarry Smith 12141cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1215db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1216bd481603SBarry Smith M*/ 12179371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \ 12189371c9d4SSatish Balay PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \ 121964075487SBarry Smith if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \ 1220a6042fd4SStefano Zampini else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 12219371c9d4SSatish Balay }) 12227c922b88SBarry Smith 1223bd481603SBarry Smith /*MC 1224d6e23781SBarry Smith MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1225bd481603SBarry Smith inserted using a local number of the rows and columns 1226bd481603SBarry Smith 1227bd481603SBarry Smith Synopsis: 1228aaa7dc30SBarry Smith #include <petscmat.h> 1229d6e23781SBarry Smith PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1230bd481603SBarry Smith 1231bd481603SBarry Smith Not Collective 1232bd481603SBarry Smith 1233bd481603SBarry Smith Input Parameters: 1234bd481603SBarry Smith + nrows - the number of rows indicated 12351d73ed98SBarry Smith . rows - the indices of the rows 1236bd481603SBarry Smith . ncols - the number of columns in the matrix 1237bd481603SBarry Smith . cols - the columns indicated 1238bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1239a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1240bd481603SBarry Smith 12412ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1242bd481603SBarry Smith 1243bd481603SBarry Smith Notes: 12442ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12452ef1f0ffSBarry Smith the use of this routine 1246bd481603SBarry Smith 12472ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1248bd481603SBarry Smith 1249d0609cedSBarry Smith This is a MACRO not a function because it uses variables declared in MatPreallocateBegin(). 12501620fd73SBarry Smith 12511cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`, 1252db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1253bd481603SBarry Smith M*/ 125494bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \ 12559371c9d4SSatish Balay PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \ 1256d3d32019SBarry Smith if (cols[__i] >= __end) onz[row - __rstart]++; \ 1257a6042fd4SStefano Zampini else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 12589371c9d4SSatish Balay }) 1259d3d32019SBarry Smith 1260bd481603SBarry Smith /*MC 1261a6042fd4SStefano Zampini MatPreallocateLocation - An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists 126216371a99SBarry Smith 126316371a99SBarry Smith Synopsis: 1264aaa7dc30SBarry Smith #include <petscmat.h> 126516371a99SBarry Smith PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz) 126616371a99SBarry Smith 126716371a99SBarry Smith Not Collective 126816371a99SBarry Smith 126916371a99SBarry Smith Input Parameters: 1270a2b725a8SWilliam Gropp + A - matrix 127116371a99SBarry Smith . row - row where values exist (must be local to this process) 127216371a99SBarry Smith . ncols - number of columns 127316371a99SBarry Smith . cols - columns with nonzeros 127416371a99SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1275a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 127616371a99SBarry Smith 12772ef1f0ffSBarry Smith Level: deprecated (since v3.19) 127816371a99SBarry Smith 127916371a99SBarry Smith Notes: 12802ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12812ef1f0ffSBarry Smith the use of this routine 128216371a99SBarry Smith 12832ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 128416371a99SBarry Smith 128516371a99SBarry Smith This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines. 128616371a99SBarry Smith 12871cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1288db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 128916371a99SBarry Smith M*/ 1290d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz)) 129116371a99SBarry Smith 129216371a99SBarry Smith /*MC 1293d0609cedSBarry Smith MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per 1294bd481603SBarry Smith row in a matrix providing the data that one can use to correctly preallocate the matrix. 1295bd481603SBarry Smith 1296bd481603SBarry Smith Synopsis: 1297aaa7dc30SBarry Smith #include <petscmat.h> 1298d0609cedSBarry Smith PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz) 1299bd481603SBarry Smith 1300d083f849SBarry Smith Collective 1301bd481603SBarry Smith 1302bd481603SBarry Smith Input Parameters: 130316371a99SBarry Smith + dnz - the array that was be passed to the matrix preallocation routines 1304a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1305bd481603SBarry Smith 13062ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1307bd481603SBarry Smith 1308bd481603SBarry Smith Notes: 13092ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 13102ef1f0ffSBarry Smith the use of this routine 1311d0609cedSBarry Smith 13122ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1313bd481603SBarry Smith 13142ef1f0ffSBarry Smith Developer Note: 1315d0609cedSBarry Smith This is a MACRO not a function because it closes the { started in MatPreallocateBegin(). 13161620fd73SBarry Smith 13171cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1318db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 1319bd481603SBarry Smith M*/ 13209371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \ 13219371c9d4SSatish Balay PetscCall(PetscFree2(dnz, onz)); \ 13229371c9d4SSatish Balay } \ 13239371c9d4SSatish Balay while (0) 1324d0609cedSBarry Smith 1325edd03b47SJacob Faibussowitsch #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateEnd()", ) MatPreallocateEnd(__VA_ARGS__) 13267c922b88SBarry Smith 13277b80b807SBarry Smith /* Routines unique to particular data structures */ 1328014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *); 1329698d4c6aSKris Buschelman 1330014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *); 1331014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *); 1332698d4c6aSKris Buschelman 1333014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]); 1334014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]); 1335014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1336014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1337014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1338014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool); 13397b80b807SBarry Smith 1340a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4 1341a96a251dSBarry Smith 1342014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1343014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1344014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]); 134519b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt); 1346273d9f13SBarry Smith 1347014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1348014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1349014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1350014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1351014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1352014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1353014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1354014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]); 1355b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *); 1356252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *); 1357014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]); 1358014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]); 13599230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 13609230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 1361014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *); 1362273d9f13SBarry Smith 136349a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *); 1364ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt); 1365edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatDenseSetLDA()", ) static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda) 1366d71ae5a4SJacob Faibussowitsch { 13679371c9d4SSatish Balay return MatDenseSetLDA(A, lda); 13689371c9d4SSatish Balay } 1369014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *); 13701b807ce4Svictorle 1371621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1372621e819fSSatish Balay 1373014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat); 1374014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat); 13752e8a6d31SBarry Smith 1376014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *); 13777cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *); 13787b80b807SBarry Smith /* 13797b80b807SBarry Smith These routines are not usually accessed directly, rather solving is 138094b7f48cSBarry Smith done through the KSP and PC interfaces. 13817b80b807SBarry Smith */ 13827b80b807SBarry Smith 138376bdecfbSBarry Smith /*J 13842ef1f0ffSBarry Smith MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used 13852ef1f0ffSBarry Smith to reduce fill in sparse factorizations. 1386d9274352SBarry Smith 1387d9274352SBarry Smith Level: beginner 1388d9274352SBarry Smith 13892c7c0729SBarry Smith Notes: 139016a05f60SBarry Smith If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one 139116a05f60SBarry Smith of its own. 13922c7c0729SBarry Smith 13932ef1f0ffSBarry Smith There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()` 13942ef1f0ffSBarry Smith 13952ef1f0ffSBarry Smith Developer Note: 13962ef1f0ffSBarry Smith This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning` 13972ef1f0ffSBarry Smith 13981cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`, 13992ef1f0ffSBarry Smith `PCFactorSetOrderingType()` 140076bdecfbSBarry Smith J*/ 140119fd82e9SBarry Smith typedef const char *MatOrderingType; 14022692d6eeSBarry Smith #define MATORDERINGNATURAL "natural" 14032692d6eeSBarry Smith #define MATORDERINGND "nd" 14042692d6eeSBarry Smith #define MATORDERING1WD "1wd" 14052692d6eeSBarry Smith #define MATORDERINGRCM "rcm" 14062692d6eeSBarry Smith #define MATORDERINGQMD "qmd" 14072692d6eeSBarry Smith #define MATORDERINGROWLENGTH "rowlength" 1408510184a7SJed Brown #define MATORDERINGWBM "wbm" 1409fc1bef75SJed Brown #define MATORDERINGSPECTRAL "spectral" 1410312e372aSBarry Smith #define MATORDERINGAMD "amd" /* only works if UMFPACK is installed with PETSc */ 1411048412efSPablo Brubeck #define MATORDERINGMETISND "metisnd" /* only works if METIS is installed with PETSc */ 14129bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */ 14132c7c0729SBarry Smith #define MATORDERINGEXTERNAL "external" /* uses an ordering type internal to the factorization package */ 1414b12f92e5SBarry Smith 141519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrdering(Mat, MatOrderingType, IS *, IS *); 1416140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrderingList(PetscFunctionList *); 1417bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *)); 1418140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList; 1419d4fbbf0eSBarry Smith 1420013e2dc7SBarry Smith #include "petscmatcoarsen.h" 1421013e2dc7SBarry Smith 1422014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS); 1423fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *); 1424a2ce50c7SBarry Smith 14254ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *); 14264ac6704cSBarry Smith 1427d91e6319SBarry Smith /*S 14282ef1f0ffSBarry Smith MatFactorShiftType - Type of numeric shift used for factorizations 1429d90ac83dSHong Zhang 14302ef1f0ffSBarry Smith Values: 14312ef1f0ffSBarry Smith + `MAT_SHIFT_NONE` - do not shift the matrix diagonal entries 14322ef1f0ffSBarry Smith . `MAT_SHIFT_NONZERO` - shift the entries to be non-zero 14332ef1f0ffSBarry Smith . `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite 14342ef1f0ffSBarry Smith - `MAT_SHIFT_INBLOCKS` - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ` 1435d90ac83dSHong Zhang 14362ef1f0ffSBarry Smith Level: intermediate 14372ef1f0ffSBarry Smith 14381cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()` 1439d90ac83dSHong Zhang S*/ 14409371c9d4SSatish Balay typedef enum { 14419371c9d4SSatish Balay MAT_SHIFT_NONE, 14429371c9d4SSatish Balay MAT_SHIFT_NONZERO, 14439371c9d4SSatish Balay MAT_SHIFT_POSITIVE_DEFINITE, 14449371c9d4SSatish Balay MAT_SHIFT_INBLOCKS 14459371c9d4SSatish Balay } MatFactorShiftType; 14466a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[]; 14475e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[]; 1448d90ac83dSHong Zhang 1449d90ac83dSHong Zhang /*S 1450ec5066bdSBarry Smith MatFactorError - indicates what type of error was generated in a matrix factorization 14519aa7eafdSHong Zhang 14522ef1f0ffSBarry Smith Values: 14532ef1f0ffSBarry Smith + `MAT_FACTOR_NOERROR` - there was no error during the factorization 14542ef1f0ffSBarry Smith . `MAT_FACTOR_STRUCT_ZEROPIVOT` - there was a missing entry in a diagonal location of the matrix 14552ef1f0ffSBarry Smith . `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization 14562ef1f0ffSBarry Smith . `MAT_FACTOR_OUTMEMORY` - the factorization has run out of memory 14572ef1f0ffSBarry Smith - `MAT_FACTOR_OTHER` - some other error has occurred. 14589aa7eafdSHong Zhang 14592ef1f0ffSBarry Smith Level: intermediate 146000e125f8SBarry Smith 14612ef1f0ffSBarry Smith Note: 14622ef1f0ffSBarry Smith When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason` 14632ef1f0ffSBarry Smith 14641cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`, 14652ef1f0ffSBarry Smith `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason` 14669aa7eafdSHong Zhang S*/ 14679371c9d4SSatish Balay typedef enum { 14689371c9d4SSatish Balay MAT_FACTOR_NOERROR, 14699371c9d4SSatish Balay MAT_FACTOR_STRUCT_ZEROPIVOT, 14709371c9d4SSatish Balay MAT_FACTOR_NUMERIC_ZEROPIVOT, 14719371c9d4SSatish Balay MAT_FACTOR_OUTMEMORY, 14729371c9d4SSatish Balay MAT_FACTOR_OTHER 14739371c9d4SSatish Balay } MatFactorError; 14749aa7eafdSHong Zhang 147500e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *); 1476b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat); 14777b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *); 147800e125f8SBarry Smith 14799aa7eafdSHong Zhang /*S 1480422a814eSBarry Smith MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization 1481b00f7748SHong Zhang 1482b00f7748SHong Zhang Level: developer 1483b00f7748SHong Zhang 14842ef1f0ffSBarry Smith Note: 14852ef1f0ffSBarry Smith You can use `MatFactorInfoInitialize()` to set default values. 1486b00f7748SHong Zhang 14872ef1f0ffSBarry Smith Fortran Note: 14882ef1f0ffSBarry Smith The data is available in a double precision arrays of size `MAT_FACTORINFO_SIZE` 14892ef1f0ffSBarry Smith 14901cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, 14912ef1f0ffSBarry Smith `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()` 1492b00f7748SHong Zhang S*/ 1493b00f7748SHong Zhang typedef struct { 149415e8a5b3SHong Zhang PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */ 149585317021SBarry Smith PetscReal usedt; 149615e8a5b3SHong Zhang PetscReal dt; /* drop tolerance */ 1497b00f7748SHong Zhang PetscReal dtcol; /* tolerance for pivoting */ 149815e8a5b3SHong Zhang PetscReal dtcount; /* maximum nonzeros to be allowed per row */ 149967e28bfeSBarry Smith PetscReal fill; /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */ 1500348344bbSBarry Smith PetscReal levels; /* ICC/ILU(levels) */ 1501bcd9e38bSBarry Smith PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 1502bcd9e38bSBarry Smith factorization may be faster if do not pivot */ 150315e8a5b3SHong Zhang PetscReal zeropivot; /* pivot is called zero if less than this */ 1504f4db908eSBarry Smith PetscReal shifttype; /* type of shift added to matrix factor to prevent zero pivots */ 1505f4db908eSBarry Smith PetscReal shiftamount; /* how large the shift is */ 150615e8a5b3SHong Zhang } MatFactorInfo; 1507ffa6d0a5SLois Curfman McInnes 1508014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *); 15099a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *); 15109a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15119a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *); 15129a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *); 15139a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *); 15149a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 15159a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 15169a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15179a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *); 15189a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *); 15193f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *); 15203f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15213f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *); 1522014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *); 1523014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec); 1524014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec); 1525014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec); 1526014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec); 1527014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec); 1528014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec); 1529014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs); 15307c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat); 15317c2f51b8SStefano Zampini 15329371c9d4SSatish Balay typedef enum { 15339371c9d4SSatish Balay MAT_FACTOR_SCHUR_UNFACTORED, 15349371c9d4SSatish Balay MAT_FACTOR_SCHUR_FACTORED, 15359371c9d4SSatish Balay MAT_FACTOR_SCHUR_INVERTED 15369371c9d4SSatish Balay } MatFactorSchurStatus; 15378e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS); 15387c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 15397c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus); 15405a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat); 15417c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 15425a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec); 15435a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec); 15446dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat); 1545bb5a7306SBarry Smith 15468a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat); 1547d91e6319SBarry Smith /*E 1548d91e6319SBarry Smith MatSORType - What type of (S)SOR to perform 1549bb1eb677SSatish Balay 15502ef1f0ffSBarry Smith Values: 15512ef1f0ffSBarry Smith + `SOR_FORWARD_SWEEP` - do a sweep from the first row of the matrix to the last 15522ef1f0ffSBarry Smith . `SOR_BACKWARD_SWEEP` - do a sweep from the last row to the first 15532ef1f0ffSBarry Smith . `SOR_SYMMETRIC_SWEEP` - do a sweep from the first row to the last and then back to the first 15542ef1f0ffSBarry Smith . `SOR_LOCAL_FORWARD_SWEEP` - each MPI rank does its own forward sweep with no communication 15552ef1f0ffSBarry Smith . `SOR_LOCAL_BACKWARD_SWEEP` - each MPI rank does its own backward sweep with no communication 15562ef1f0ffSBarry Smith . `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI rank does its own symmetric sweep with no communication 15572ef1f0ffSBarry Smith . `SOR_ZERO_INITIAL_GUESS` - indicates the initial solution is zero so the sweep can avoid unneeded computation 15582ef1f0ffSBarry Smith . `SOR_EISENSTAT` - apply the Eisentat application of SOR, see `PCEISENSTAT` 15592ef1f0ffSBarry Smith . `SOR_APPLY_UPPER` - multiply by the upper triangular portion of the matrix 15602ef1f0ffSBarry Smith - `SOR_APPLY_LOWER` - multiply by the lower triangular portion of the matrix 15612ef1f0ffSBarry Smith 1562d91e6319SBarry Smith Level: beginner 1563d91e6319SBarry Smith 15642ef1f0ffSBarry Smith Note: 15652ef1f0ffSBarry Smith These may be bitwise ORd together 1566d9274352SBarry Smith 15672ef1f0ffSBarry Smith Developer Note: 15682ef1f0ffSBarry Smith Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below 1569d91e6319SBarry Smith 15701cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSOR()` 1571d91e6319SBarry Smith E*/ 15729371c9d4SSatish Balay typedef enum { 15739371c9d4SSatish Balay SOR_FORWARD_SWEEP = 1, 15749371c9d4SSatish Balay SOR_BACKWARD_SWEEP = 2, 15759371c9d4SSatish Balay SOR_SYMMETRIC_SWEEP = 3, 15769371c9d4SSatish Balay SOR_LOCAL_FORWARD_SWEEP = 4, 15779371c9d4SSatish Balay SOR_LOCAL_BACKWARD_SWEEP = 8, 15789371c9d4SSatish Balay SOR_LOCAL_SYMMETRIC_SWEEP = 12, 15799371c9d4SSatish Balay SOR_ZERO_INITIAL_GUESS = 16, 15809371c9d4SSatish Balay SOR_EISENSTAT = 32, 15819371c9d4SSatish Balay SOR_APPLY_UPPER = 64, 15829371c9d4SSatish Balay SOR_APPLY_LOWER = 128 15839371c9d4SSatish Balay } MatSORType; 1584014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec); 15858ed539a5SBarry Smith 15867086a01eSPeter Brune /*S 15877086a01eSPeter Brune MatColoring - Object for managing the coloring of matrices. 15887086a01eSPeter Brune 15897086a01eSPeter Brune Level: beginner 15907086a01eSPeter Brune 1591ec5066bdSBarry Smith Notes: 159287497f52SBarry Smith Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 159387497f52SBarry Smith matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors). 1594ec5066bdSBarry Smith 159587497f52SBarry Smith Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This 15962ef1f0ffSBarry Smith same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices. 1597ec5066bdSBarry Smith 15981cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`, 15992ef1f0ffSBarry Smith `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`, 16002ef1f0ffSBarry Smith `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen` 16017086a01eSPeter Brune S*/ 1602d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring; 1603d4db15c4SBarry Smith 1604d4db15c4SBarry Smith /*J 1605d4db15c4SBarry Smith MatColoringType - String with the name of a PETSc matrix coloring 1606d9274352SBarry Smith 1607d9274352SBarry Smith Level: beginner 1608d9274352SBarry Smith 16091cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring` 161076bdecfbSBarry Smith J*/ 161119fd82e9SBarry Smith typedef const char *MatColoringType; 16125567d71aSPeter Brune #define MATCOLORINGJP "jp" 1613b9acb617SPeter Brune #define MATCOLORINGPOWER "power" 16142692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural" 16152692d6eeSBarry Smith #define MATCOLORINGSL "sl" 16162692d6eeSBarry Smith #define MATCOLORINGLF "lf" 16172692d6eeSBarry Smith #define MATCOLORINGID "id" 16188121bdceSPeter Brune #define MATCOLORINGGREEDY "greedy" 1619b12f92e5SBarry Smith 16208ac6da0aSPeter Brune /*E 16212ef1f0ffSBarry Smith MatColoringWeightType - Type of weight scheme used for the coloring algorithm 16228ac6da0aSPeter Brune 16232ef1f0ffSBarry Smith Values: 162487497f52SBarry Smith + `MAT_COLORING_RANDOM` - Random weights 162587497f52SBarry Smith . `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering. 162687497f52SBarry Smith - `MAT_COLORING_LF` - Last-first weighting. 16278ac6da0aSPeter Brune 16288ac6da0aSPeter Brune Level: intermediate 16298ac6da0aSPeter Brune 16301cc06b55SBarry Smith .seealso: [](ch_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()` 16318ac6da0aSPeter Brune E*/ 16329371c9d4SSatish Balay typedef enum { 16339371c9d4SSatish Balay MAT_COLORING_WEIGHT_RANDOM, 16349371c9d4SSatish Balay MAT_COLORING_WEIGHT_LEXICAL, 16359371c9d4SSatish Balay MAT_COLORING_WEIGHT_LF, 16369371c9d4SSatish Balay MAT_COLORING_WEIGHT_SL 16379371c9d4SSatish Balay } MatColoringWeightType; 16388ac6da0aSPeter Brune 1639335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *); 1640d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *); 1641335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *); 1642335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer); 1643335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType); 1644335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring); 1645335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt); 1646335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *); 1647335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt); 1648335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *); 1649335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *); 1650335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring)); 1651014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *); 16528ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType); 1653c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *); 16548ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm); 1655bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring); 1656edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatColoringTest()", ) static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring) 1657d71ae5a4SJacob Faibussowitsch { 16589371c9d4SSatish Balay return MatColoringTest(matcoloring, iscoloring); 16599371c9d4SSatish Balay } 1660bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring); 1661639f9d9dSBarry Smith 1662d9274352SBarry Smith /*S 166387497f52SBarry Smith MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring 1664639f9d9dSBarry Smith 1665d9274352SBarry Smith Level: beginner 1666d9274352SBarry Smith 1667ec5066bdSBarry Smith Notes: 166887497f52SBarry Smith This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()` 1669ec5066bdSBarry Smith 16702ef1f0ffSBarry Smith The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object 16712ef1f0ffSBarry Smith 16721cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()` 1673d9274352SBarry Smith S*/ 1674e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring; 1675639f9d9dSBarry Smith 1676014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *); 1677014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *); 1678014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer); 1679014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *); 1680014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **); 1681014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal); 1682014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring); 1683d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *); 1684014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec); 1685edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]); 1686f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring); 1687f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt); 1688bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *); 1689b1683b59SHong Zhang 1690b1683b59SHong Zhang /*S 1691b9af6bddSHong Zhang MatTransposeColoring - Object for computing a sparse matrix product C=A*B^T via coloring 1692b1683b59SHong Zhang 16932ef1f0ffSBarry Smith Level: developer 1694b1683b59SHong Zhang 16951cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()` 1696b1683b59SHong Zhang S*/ 1697b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring; 1698b1683b59SHong Zhang 1699014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *); 1700014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat); 1701014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat); 1702014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *); 1703b1683b59SHong Zhang 1704d9274352SBarry Smith /*S 1705d9274352SBarry Smith MatPartitioning - Object for managing the partitioning of a matrix or graph 1706d9274352SBarry Smith 1707d9274352SBarry Smith Level: beginner 1708d9274352SBarry Smith 170987497f52SBarry Smith Note: 171087497f52SBarry Smith There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations 171187497f52SBarry Smith via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`) 1712ec5066bdSBarry Smith 1713ec5066bdSBarry Smith Developers Note: 17142ef1f0ffSBarry Smith It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed 1715ec5066bdSBarry Smith 17161cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`, 17172ef1f0ffSBarry Smith `MatCoarsenType`, `MatCoarsenType` 1718d9274352SBarry Smith S*/ 171991e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning; 1720d9274352SBarry Smith 172176bdecfbSBarry Smith /*J 17228f6c3df8SBarry Smith MatPartitioningType - String with the name of a PETSc matrix partitioning 1723d9274352SBarry Smith 1724d9274352SBarry Smith Level: beginner 17250d04baf8SBarry Smith dm 17261cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`, 17272ef1f0ffSBarry Smith `MatCoarsenType`, `MatCoarsenType` 172876bdecfbSBarry Smith J*/ 172919fd82e9SBarry Smith typedef const char *MatPartitioningType; 17302692d6eeSBarry Smith #define MATPARTITIONINGCURRENT "current" 1731aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE "average" 17322692d6eeSBarry Smith #define MATPARTITIONINGSQUARE "square" 17332692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis" 17342692d6eeSBarry Smith #define MATPARTITIONINGCHACO "chaco" 17352692d6eeSBarry Smith #define MATPARTITIONINGPARTY "party" 173650d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch" 173788d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch" 173871306c60Sjroman 1739014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *); 174019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType); 1741014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt); 1742014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat); 1743252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt); 1744014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]); 1745014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]); 1746ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool); 1747ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *); 1748014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *); 1749fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *); 1750668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS); 1751f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *); 1752014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *); 1753bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning)); 1754014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer); 1755fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]); 1756014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning); 175719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *); 1758ca161407SBarry Smith 175927538973SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part); 1760014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning); 1761014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *); 17620752156aSBarry Smith 17639371c9d4SSatish Balay typedef enum { 17649371c9d4SSatish Balay MP_CHACO_MULTILEVEL = 1, 17659371c9d4SSatish Balay MP_CHACO_SPECTRAL = 2, 17669371c9d4SSatish Balay MP_CHACO_LINEAR = 4, 17679371c9d4SSatish Balay MP_CHACO_RANDOM = 5, 17689371c9d4SSatish Balay MP_CHACO_SCATTERED = 6 17699371c9d4SSatish Balay } MPChacoGlobalType; 17706a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[]; 17719371c9d4SSatish Balay typedef enum { 17729371c9d4SSatish Balay MP_CHACO_KERNIGHAN = 1, 17739371c9d4SSatish Balay MP_CHACO_NONE = 2 17749371c9d4SSatish Balay } MPChacoLocalType; 17756a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[]; 17769371c9d4SSatish Balay typedef enum { 17779371c9d4SSatish Balay MP_CHACO_LANCZOS = 0, 17789371c9d4SSatish Balay MP_CHACO_RQI = 1 17799371c9d4SSatish Balay } MPChacoEigenType; 17806a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[]; 1781b6956c12SJose Roman 1782014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType); 1783014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *); 1784014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType); 1785014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *); 1786014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal); 1787014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType); 1788014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *); 1789014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal); 1790014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *); 1791014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt); 1792014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *); 179371306c60Sjroman 179471306c60Sjroman #define MP_PARTY_OPT "opt" 179571306c60Sjroman #define MP_PARTY_LIN "lin" 179671306c60Sjroman #define MP_PARTY_SCA "sca" 179771306c60Sjroman #define MP_PARTY_RAN "ran" 179871306c60Sjroman #define MP_PARTY_GBF "gbf" 179971306c60Sjroman #define MP_PARTY_GCF "gcf" 180071306c60Sjroman #define MP_PARTY_BUB "bub" 180171306c60Sjroman #define MP_PARTY_DEF "def" 1802014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *); 180371306c60Sjroman #define MP_PARTY_HELPFUL_SETS "hs" 180471306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl" 180571306c60Sjroman #define MP_PARTY_NONE "no" 1806014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *); 1807014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal); 1808014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool); 1809014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool); 181071306c60Sjroman 18119371c9d4SSatish Balay typedef enum { 18129371c9d4SSatish Balay MP_PTSCOTCH_DEFAULT, 18139371c9d4SSatish Balay MP_PTSCOTCH_QUALITY, 18149371c9d4SSatish Balay MP_PTSCOTCH_SPEED, 18159371c9d4SSatish Balay MP_PTSCOTCH_BALANCE, 18169371c9d4SSatish Balay MP_PTSCOTCH_SAFETY, 18179371c9d4SSatish Balay MP_PTSCOTCH_SCALABILITY 18189371c9d4SSatish Balay } MPPTScotchStrategyType; 18196a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[]; 1820e0f1cffaSJose Roman 1821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal); 1822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *); 1823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType); 1824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *); 182571306c60Sjroman 1826b43b03e9SMark F. Adams /* 18276294fa2bSFande Kong * hierarchical partitioning 18286294fa2bSFande Kong */ 18294e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *); 18304e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *); 18314e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt); 18324e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt); 18336294fa2bSFande Kong 1834014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *); 1835591294e4SBarry Smith 18360752156aSBarry Smith /* 1837c786d857SStefano Zampini If you add entries here you must also add them to src/mat/f90-mod/petscmat.h 1838c786d857SStefano Zampini If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx 1839d4fbbf0eSBarry Smith */ 18409371c9d4SSatish Balay typedef enum { 18419371c9d4SSatish Balay MATOP_SET_VALUES = 0, 18421c1c02c0SLois Curfman McInnes MATOP_GET_ROW = 1, 18431c1c02c0SLois Curfman McInnes MATOP_RESTORE_ROW = 2, 18441c1c02c0SLois Curfman McInnes MATOP_MULT = 3, 18451c1c02c0SLois Curfman McInnes MATOP_MULT_ADD = 4, 18467c922b88SBarry Smith MATOP_MULT_TRANSPOSE = 5, 18477c922b88SBarry Smith MATOP_MULT_TRANSPOSE_ADD = 6, 18481c1c02c0SLois Curfman McInnes MATOP_SOLVE = 7, 18491c1c02c0SLois Curfman McInnes MATOP_SOLVE_ADD = 8, 18507c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE = 9, 18517c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE_ADD = 10, 18521c1c02c0SLois Curfman McInnes MATOP_LUFACTOR = 11, 18531c1c02c0SLois Curfman McInnes MATOP_CHOLESKYFACTOR = 12, 1854a714c06dSBarry Smith MATOP_SOR = 13, 18551c1c02c0SLois Curfman McInnes MATOP_TRANSPOSE = 14, 18561c1c02c0SLois Curfman McInnes MATOP_GETINFO = 15, 18571c1c02c0SLois Curfman McInnes MATOP_EQUAL = 16, 18581c1c02c0SLois Curfman McInnes MATOP_GET_DIAGONAL = 17, 18591c1c02c0SLois Curfman McInnes MATOP_DIAGONAL_SCALE = 18, 18601c1c02c0SLois Curfman McInnes MATOP_NORM = 19, 18611c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_BEGIN = 20, 18621c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_END = 21, 1863d519adbfSMatthew Knepley MATOP_SET_OPTION = 22, 1864d519adbfSMatthew Knepley MATOP_ZERO_ENTRIES = 23, 1865d519adbfSMatthew Knepley MATOP_ZERO_ROWS = 24, 1866d519adbfSMatthew Knepley MATOP_LUFACTOR_SYMBOLIC = 25, 1867d519adbfSMatthew Knepley MATOP_LUFACTOR_NUMERIC = 26, 1868d519adbfSMatthew Knepley MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27, 1869d519adbfSMatthew Knepley MATOP_CHOLESKY_FACTOR_NUMERIC = 28, 1870e5f2d425SStefano Zampini MATOP_SETUP = 29, 1871d519adbfSMatthew Knepley MATOP_ILUFACTOR_SYMBOLIC = 30, 1872d519adbfSMatthew Knepley MATOP_ICCFACTOR_SYMBOLIC = 31, 1873a5b7ff6bSBarry Smith MATOP_GET_DIAGONAL_BLOCK = 32, 1874e5f2d425SStefano Zampini MATOP_SET_INF = 33, 1875d519adbfSMatthew Knepley MATOP_DUPLICATE = 34, 1876d519adbfSMatthew Knepley MATOP_FORWARD_SOLVE = 35, 1877d519adbfSMatthew Knepley MATOP_BACKWARD_SOLVE = 36, 1878d519adbfSMatthew Knepley MATOP_ILUFACTOR = 37, 1879d519adbfSMatthew Knepley MATOP_ICCFACTOR = 38, 1880d519adbfSMatthew Knepley MATOP_AXPY = 39, 18817dae84e0SHong Zhang MATOP_CREATE_SUBMATRICES = 40, 1882d519adbfSMatthew Knepley MATOP_INCREASE_OVERLAP = 41, 1883d519adbfSMatthew Knepley MATOP_GET_VALUES = 42, 1884d519adbfSMatthew Knepley MATOP_COPY = 43, 1885d519adbfSMatthew Knepley MATOP_GET_ROW_MAX = 44, 1886d519adbfSMatthew Knepley MATOP_SCALE = 45, 1887d519adbfSMatthew Knepley MATOP_SHIFT = 46, 188835153367SBarry Smith MATOP_DIAGONAL_SET = 47, 18899d39f69dSJed Brown MATOP_ZERO_ROWS_COLUMNS = 48, 18909d39f69dSJed Brown MATOP_SET_RANDOM = 49, 1891d519adbfSMatthew Knepley MATOP_GET_ROW_IJ = 50, 1892d519adbfSMatthew Knepley MATOP_RESTORE_ROW_IJ = 51, 1893d519adbfSMatthew Knepley MATOP_GET_COLUMN_IJ = 52, 1894d519adbfSMatthew Knepley MATOP_RESTORE_COLUMN_IJ = 53, 1895d519adbfSMatthew Knepley MATOP_FDCOLORING_CREATE = 54, 1896d519adbfSMatthew Knepley MATOP_COLORING_PATCH = 55, 1897d519adbfSMatthew Knepley MATOP_SET_UNFACTORED = 56, 1898d519adbfSMatthew Knepley MATOP_PERMUTE = 57, 1899d519adbfSMatthew Knepley MATOP_SET_VALUES_BLOCKED = 58, 19007dae84e0SHong Zhang MATOP_CREATE_SUBMATRIX = 59, 1901d519adbfSMatthew Knepley MATOP_DESTROY = 60, 1902d519adbfSMatthew Knepley MATOP_VIEW = 61, 1903d519adbfSMatthew Knepley MATOP_CONVERT_FROM = 62, 1904e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_63=63 */ 19057bab7c10SHong Zhang MATOP_MATMAT_MULT_SYMBOLIC = 64, 19067bab7c10SHong Zhang MATOP_MATMAT_MULT_NUMERIC = 65, 1907d519adbfSMatthew Knepley MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66, 1908d519adbfSMatthew Knepley MATOP_SET_VALUES_LOCAL = 67, 1909d519adbfSMatthew Knepley MATOP_ZERO_ROWS_LOCAL = 68, 1910d519adbfSMatthew Knepley MATOP_GET_ROW_MAX_ABS = 69, 1911d519adbfSMatthew Knepley MATOP_GET_ROW_MIN_ABS = 70, 1912d519adbfSMatthew Knepley MATOP_CONVERT = 71, 1913e5f2d425SStefano Zampini MATOP_HAS_OPERATION = 72, 19149d39f69dSJed Brown /* MATOP_PLACEHOLDER_73=73, */ 1915d519adbfSMatthew Knepley MATOP_SET_VALUES_ADIFOR = 74, 1916d519adbfSMatthew Knepley MATOP_FD_COLORING_APPLY = 75, 1917d519adbfSMatthew Knepley MATOP_SET_FROM_OPTIONS = 76, 1918e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_77=77, */ 1919e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_78=78, */ 19209d39f69dSJed Brown MATOP_FIND_ZERO_DIAGONALS = 79, 1921d519adbfSMatthew Knepley MATOP_MULT_MULTIPLE = 80, 1922d519adbfSMatthew Knepley MATOP_SOLVE_MULTIPLE = 81, 1923d519adbfSMatthew Knepley MATOP_GET_INERTIA = 82, 1924d519adbfSMatthew Knepley MATOP_LOAD = 83, 1925d519adbfSMatthew Knepley MATOP_IS_SYMMETRIC = 84, 1926d519adbfSMatthew Knepley MATOP_IS_HERMITIAN = 85, 1927d519adbfSMatthew Knepley MATOP_IS_STRUCTURALLY_SYMMETRIC = 86, 1928820469bcSHong Zhang MATOP_SET_VALUES_BLOCKEDLOCAL = 87, 1929b41ce5d5SBarry Smith MATOP_CREATE_VECS = 88, 1930e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_89=89, */ 1931d519adbfSMatthew Knepley MATOP_MAT_MULT_SYMBOLIC = 90, 1932d519adbfSMatthew Knepley MATOP_MAT_MULT_NUMERIC = 91, 1933e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_92=92, */ 1934d519adbfSMatthew Knepley MATOP_PTAP_SYMBOLIC = 93, 1935d519adbfSMatthew Knepley MATOP_PTAP_NUMERIC = 94, 1936e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_95=95, */ 1937bda6c4cbSBarry Smith MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96, 1938bda6c4cbSBarry Smith MATOP_MAT_TRANSPOSE_MULT_NUMER = 97, 1939e5f2d425SStefano Zampini MATOP_BIND_TO_CPU = 98, 19407a3c3d58SStefano Zampini MATOP_PRODUCTSETFROMOPTIONS = 99, 19417a3c3d58SStefano Zampini MATOP_PRODUCTSYMBOLIC = 100, 19427a3c3d58SStefano Zampini MATOP_PRODUCTNUMERIC = 101, 1943d519adbfSMatthew Knepley MATOP_CONJUGATE = 102, 1944e5f2d425SStefano Zampini MATOP_VIEW_NATIVE = 103, 1945d519adbfSMatthew Knepley MATOP_SET_VALUES_ROW = 104, 1946d519adbfSMatthew Knepley MATOP_REAL_PART = 105, 1947bda6c4cbSBarry Smith MATOP_IMAGINARY_PART = 106, 1948bda6c4cbSBarry Smith MATOP_GET_ROW_UPPER_TRIANGULAR = 107, 1949bda6c4cbSBarry Smith MATOP_RESTORE_ROW_UPPER_TRIANG = 108, 1950bda6c4cbSBarry Smith MATOP_MAT_SOLVE = 109, 195129eadf9eSStefano Zampini MATOP_MAT_SOLVE_TRANSPOSE = 110, 1952d519adbfSMatthew Knepley MATOP_GET_ROW_MIN = 111, 19530e8d04f7SBarry Smith MATOP_GET_COLUMN_VECTOR = 112, 1954d519adbfSMatthew Knepley MATOP_MISSING_DIAGONAL = 113, 19550e8d04f7SBarry Smith MATOP_GET_SEQ_NONZERO_STRUCTUR = 114, 195689c6957cSBarry Smith MATOP_CREATE = 115, 195789c6957cSBarry Smith MATOP_GET_GHOSTS = 116, 19580e8d04f7SBarry Smith MATOP_GET_LOCAL_SUB_MATRIX = 117, 19590e8d04f7SBarry Smith MATOP_RESTORE_LOCALSUB_MATRIX = 118, 1960eeffb40dSHong Zhang MATOP_MULT_DIAGONAL_BLOCK = 119, 19610e8d04f7SBarry Smith MATOP_HERMITIAN_TRANSPOSE = 120, 19620e8d04f7SBarry Smith MATOP_MULT_HERMITIAN_TRANSPOSE = 121, 19630e8d04f7SBarry Smith MATOP_MULT_HERMITIAN_TRANS_ADD = 122, 19640e8d04f7SBarry Smith MATOP_GET_MULTI_PROC_BLOCK = 123, 19659d39f69dSJed Brown MATOP_FIND_NONZERO_ROWS = 124, 19660e8d04f7SBarry Smith MATOP_GET_COLUMN_NORMS = 125, 19679d39f69dSJed Brown MATOP_INVERT_BLOCK_DIAGONAL = 126, 1968e5f2d425SStefano Zampini MATOP_INVERT_VBLOCK_DIAGONAL = 127, 1969b41ce5d5SBarry Smith MATOP_CREATE_SUB_MATRICES_MPI = 128, 19702b8ad9a3SHong Zhang MATOP_SET_VALUES_BATCH = 129, 1971e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_130=130, */ 19720e8d04f7SBarry Smith MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131, 1973e9b602ebSSatish Balay MATOP_TRANSPOSE_MAT_MULT_NUMER = 132, 19740e8d04f7SBarry Smith MATOP_TRANSPOSE_COLORING_CREAT = 133, 19750e8d04f7SBarry Smith MATOP_TRANS_COLORING_APPLY_SPT = 134, 19760e8d04f7SBarry Smith MATOP_TRANS_COLORING_APPLY_DEN = 135, 1977e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_136=136, */ 19780e8d04f7SBarry Smith MATOP_RART_SYMBOLIC = 137, 19790e8d04f7SBarry Smith MATOP_RART_NUMERIC = 138, 1980e09a3074SHong Zhang MATOP_SET_BLOCK_SIZES = 139, 1981f9426fe0SMark Adams MATOP_AYPX = 140, 19821919a2e2SJed Brown MATOP_RESIDUAL = 141, 19839c8f2541SHong Zhang MATOP_FDCOLORING_SETUP = 142, 1984e5f2d425SStefano Zampini MATOP_FIND_OFFBLOCK_ENTRIES = 143, 19852d033e1fSHong Zhang MATOP_MPICONCATENATESEQ = 144, 1986bb01b7b0SPatrick Sanan MATOP_DESTROYSUBMATRICES = 145, 1987e265f6d6SPatrick Sanan MATOP_TRANSPOSE_SOLVE = 146, 1988e265f6d6SPatrick Sanan MATOP_GET_VALUES_LOCAL = 147 1989fae171e0SBarry Smith } MatOperation; 19900c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void)); 1991976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void)); 1992976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *); 199394342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *); 1994edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatProductClear()", ) static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A) 1995d71ae5a4SJacob Faibussowitsch { 19969371c9d4SSatish Balay return MatProductClear(A); 19979371c9d4SSatish Balay } 1998014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void)); 1999014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void)); 2000014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *); 2001800f99ffSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *)); 2002db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType); 2003f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 2004f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 20050c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat); 2006b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType); 2007b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *); 2008112a2221SBarry Smith 200990ace30eSBarry Smith /* 201090ace30eSBarry Smith Codes for matrices stored on disk. By default they are 201190ace30eSBarry Smith stored in a universal format. By changing the format with 20126a9046bcSBarry Smith PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will 201390ace30eSBarry Smith be stored in a way natural for the matrix, for example dense matrices 201490ace30eSBarry Smith would be stored as dense. Matrices stored this way may only be 2015f4403165SShri Abhyankar read into matrices of the same type. 201690ace30eSBarry Smith */ 201790ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1 201890ace30eSBarry Smith 2019014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal); 202075d48cdbSStefano Zampini 20218546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType); 202275d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 202375d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool); 2024f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool); 2025014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *); 20263b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *); 2027014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat); 2028e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 2029edd03b47SJacob Faibussowitsch PETSC_EXTERN PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatConvert()", ) PetscErrorCode MatISGetMPIXAIJ(Mat, MatReuse, Mat *); 20301f4e1ec7SBarry Smith 2031d9274352SBarry Smith /*S 2032d9274352SBarry Smith MatNullSpace - Object that removes a null space from a vector, i.e. 2033cb6b9846SMatthew Knepley orthogonalizes the vector to a subspace 2034d9274352SBarry Smith 2035f7a9e4ceSBarry Smith Level: advanced 2036d9274352SBarry Smith 20371cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()` 2038d9274352SBarry Smith S*/ 203974637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace; 2040d9274352SBarry Smith 2041014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *); 2042014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *); 2043014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *); 2044d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec); 2045014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *); 20465fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *); 20475fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace); 2048014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace); 2049014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace); 2050014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *); 2051014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *); 2052014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer); 2053014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **); 2054014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *); 205574637425SBarry Smith 2056014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS); 2057014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal); 2058014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *); 20593f1d51d7SBarry Smith 2060014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *); 2061014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *); 2062014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *); 2063c4f061fbSSatish Balay 20640bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *); 20650bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *); 20660bacdadaSStefano Zampini 2067edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperator()", ) static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B) 2068d71ae5a4SJacob Faibussowitsch { 2069f22e26b7SPierre Jolivet return MatComputeOperator(A, PETSC_NULLPTR, B); 20709371c9d4SSatish Balay } 2071edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperatorTranspose()", ) static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B) 2072d71ae5a4SJacob Faibussowitsch { 2073f22e26b7SPierre Jolivet return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B); 20749371c9d4SSatish Balay } 2075b0a32e0cSBarry Smith 207649bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *); 207749bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *); 2078a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **); 2079a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2080a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **); 2081a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **); 2082a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **); 2083a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2084a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **); 2085a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **); 2086dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat); 2087dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]); 2088dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]); 2089910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *); 209049bd79ccSDebojyoti Ghosh 2091014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec); 209204f1ad80SBarry Smith 2093014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2094014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec); 2095014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *); 2096014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *)); 2097014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec)); 2098014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt); 2099014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat); 2100014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal); 2101014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt); 2102014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *); 2103014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]); 2104014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *); 2105014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *); 2106e884886fSBarry Smith 21076370053bSBarry Smith /*S 21086370053bSBarry Smith MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free 21096370053bSBarry Smith Jacobian vector products 2110e884886fSBarry Smith 21112ef1f0ffSBarry Smith Level: developer 21122ef1f0ffSBarry Smith 211395452b02SPatrick Sanan Notes: 211487497f52SBarry Smith `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure 21156370053bSBarry Smith 21162ef1f0ffSBarry Smith MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure 21176370053bSBarry Smith 21182ef1f0ffSBarry Smith This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator` 21196370053bSBarry Smith 21201cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`, 21212ef1f0ffSBarry Smith `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator` 21226370053bSBarry Smith S*/ 2123e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD; 2124e884886fSBarry Smith 212576bdecfbSBarry Smith /*J 21262ef1f0ffSBarry Smith MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function 2127e884886fSBarry Smith 212816a05f60SBarry Smith Values: 212916a05f60SBarry Smith + `MATMFFD_DS` - an algorithm described by Dennis and Schnabel 213016a05f60SBarry Smith - `MATMFFD_WP` - the Walker-Pernice strategy. 213116a05f60SBarry Smith 2132e884886fSBarry Smith Level: beginner 2133e884886fSBarry Smith 21341cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()` 213576bdecfbSBarry Smith J*/ 213619fd82e9SBarry Smith typedef const char *MatMFFDType; 2137e884886fSBarry Smith #define MATMFFD_DS "ds" 2138e884886fSBarry Smith #define MATMFFD_WP "wp" 2139e884886fSBarry Smith 214019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType); 2141bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD)); 2142e884886fSBarry Smith 2143014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal); 2144014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool); 2145e884886fSBarry Smith 214661ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType); 214761ab5df0SBarry Smith 2148014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *); 2149014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *); 21507dbadf16SMatthew Knepley 215153022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS 215253022affSStefano Zampini PETSC_EXTERN_TYPEDEF typedef PetscScalar (*MatH2OpusKernel)(PetscInt, PetscReal[], PetscReal[], void *); 215353022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernel, void *, PetscReal, PetscInt, PetscInt, Mat *); 215453022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *); 215553022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal); 215653022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat); 215753022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal); 215853022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool); 215953022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *); 216053022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *); 216153022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *); 2162300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar); 2163a0d2e7d8SStefano Zampini #endif 2164a0d2e7d8SStefano Zampini 2165c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL 216698e73e17SPierre Jolivet PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatHtoolKernel)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *); 2167c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernel, void *, Mat *); 2168c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernel, void *); 216998e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *); 217098e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *); 217198e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool); 21722ef1f0ffSBarry Smith 2173c7a4214aSPierre Jolivet /*E 217487497f52SBarry Smith MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL` 2175c7a4214aSPierre Jolivet 2176c7a4214aSPierre Jolivet Values: 217787497f52SBarry Smith + `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation 217887497f52SBarry Smith . `MAT_HTOOL_COMPRESSOR_FULL_ACA` - full adaptive cross approximation 217987497f52SBarry Smith - `MAT_HTOOL_COMPRESSOR_SVD` - singular value decomposition 2180c7a4214aSPierre Jolivet 218116a05f60SBarry Smith Level: intermediate 218216a05f60SBarry Smith 21831cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType` 2184c7a4214aSPierre Jolivet E*/ 21859371c9d4SSatish Balay typedef enum { 21869371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA, 21879371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_FULL_ACA, 21889371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_SVD 21899371c9d4SSatish Balay } MatHtoolCompressorType; 21902ef1f0ffSBarry Smith 219198e73e17SPierre Jolivet /*E 219287497f52SBarry Smith MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL` 219398e73e17SPierre Jolivet 219498e73e17SPierre Jolivet Values: 219587497f52SBarry Smith + `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default) - axis computed via principle component analysis, split uniformly 219687497f52SBarry Smith . `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC` - axis computed via principle component analysis, split barycentrically 219787497f52SBarry Smith . `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR` - axis along the largest extent of the bounding box, split uniformly 219887497f52SBarry Smith - `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically 219998e73e17SPierre Jolivet 220016a05f60SBarry Smith Level: intermediate 220116a05f60SBarry Smith 22022ef1f0ffSBarry Smith Note: 22032ef1f0ffSBarry Smith Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types 220498e73e17SPierre Jolivet 22051cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType` 220698e73e17SPierre Jolivet E*/ 22079371c9d4SSatish Balay typedef enum { 22089371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_PCA_REGULAR, 22099371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC, 22109371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR, 22119371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC 22129371c9d4SSatish Balay } MatHtoolClusteringType; 2213c7a4214aSPierre Jolivet #endif 2214c7a4214aSPierre Jolivet 221597969023SHong Zhang #ifdef PETSC_HAVE_MUMPS 2216014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt); 2217bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *); 2218b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal); 2219bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *); 2220bc6112feSHong Zhang 2221ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *); 2222ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *); 2223ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *); 2224ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *); 22255c0bae8cSAshish Patel PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **); 222689a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat); 22270e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat); 222897969023SHong Zhang #endif 222923a5497aSJed Brown 2230b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO 2231d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt); 2232b500a6b7SJose David Bermeol #endif 2233b500a6b7SJose David Bermeol 2234d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO 2235d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt); 2236d305a81bSVasiliy Kozyrev #endif 2237d305a81bSVasiliy Kozyrev 2238d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU 2239014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal); 2240d954db57SHong Zhang #endif 2241d954db57SHong Zhang 2242fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST 2243fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *); 2244fb785984SHong Zhang #endif 2245fb785984SHong Zhang 2246575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK 2247542aee0fSPieter Ghysels /*E 22482ef1f0ffSBarry Smith MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK`` 2249542aee0fSPieter Ghysels 22502ef1f0ffSBarry Smith Values: 22512ef1f0ffSBarry Smith + `MAT_STRUMPACK_NATURAL` - use the current ordering 22522ef1f0ffSBarry Smith . `MAT_STRUMPACK_METIS` - use MeTis to compute an ordering 22532ef1f0ffSBarry Smith . `MAT_STRUMPACK_PARMETIS` - use ParMeTis to compute an ordering 22542ef1f0ffSBarry Smith . `MAT_STRUMPACK_SCOTCH` - use Scotch to compute an ordering 22552ef1f0ffSBarry Smith . `MAT_STRUMPACK_PTSCOTCH` - use parallel Scotch to compute an ordering 22562ef1f0ffSBarry Smith - `MAT_STRUMPACK_RCM` - use an RCM ordering 22572ef1f0ffSBarry Smith 225816a05f60SBarry Smith Level: intermediate 225916a05f60SBarry Smith 22602ef1f0ffSBarry Smith Developer Note: 22612ef1f0ffSBarry Smith Should be called `MatSTRUMPACKReorderingType` 22622ef1f0ffSBarry Smith 22632ef1f0ffSBarry Smith .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetHSSRelTol()`, `MatSTRUMPACKSetReordering()` 2264542aee0fSPieter Ghysels E*/ 22659371c9d4SSatish Balay typedef enum { 22669371c9d4SSatish Balay MAT_STRUMPACK_NATURAL = 0, 226734f43fa5SPieter Ghysels MAT_STRUMPACK_METIS = 1, 226834f43fa5SPieter Ghysels MAT_STRUMPACK_PARMETIS = 2, 226934f43fa5SPieter Ghysels MAT_STRUMPACK_SCOTCH = 3, 227034f43fa5SPieter Ghysels MAT_STRUMPACK_PTSCOTCH = 4, 22719371c9d4SSatish Balay MAT_STRUMPACK_RCM = 5 22729371c9d4SSatish Balay } MatSTRUMPACKReordering; 22732ef1f0ffSBarry Smith 227434f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering); 2275575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool); 227634f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSRelTol(Mat, PetscReal); 2277edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSTRUMPACKSetHSSRelTol()", ) static inline PetscErrorCode MatSTRUMPACKSetHSSRelCompTol(Mat mat, PetscReal rtol) 2278d71ae5a4SJacob Faibussowitsch { 22799371c9d4SSatish Balay return MatSTRUMPACKSetHSSRelTol(mat, rtol); 22809371c9d4SSatish Balay } 228134f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSAbsTol(Mat, PetscReal); 228234f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMinSepSize(Mat, PetscInt); 2283edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSTRUMPACKSetHSSMinSepSize()", ) static inline PetscErrorCode MatSTRUMPACKSetHSSMinSize(Mat mat, PetscInt hssminsize) 2284d71ae5a4SJacob Faibussowitsch { 22859371c9d4SSatish Balay return MatSTRUMPACKSetHSSMinSepSize(mat, hssminsize); 22869371c9d4SSatish Balay } 228734f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMaxRank(Mat, PetscInt); 2288a36bf211SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSLeafSize(Mat, PetscInt); 2289575704cbSPieter Ghysels #endif 2290575704cbSPieter Ghysels 2291b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool); 22922216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *); 2293edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 13, 0, "MatBindToCPU()", ) static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg) 2294d71ae5a4SJacob Faibussowitsch { 22959371c9d4SSatish Balay return MatBindToCPU(A, flg); 22969371c9d4SSatish Balay } 229765a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool); 2298e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *); 2299e7e92044SBarry Smith 2300aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA 23013f9c0db1SPaul Mullowney /*E 23022ef1f0ffSBarry Smith MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU) 23032692e278SPaul Mullowney matrices. 2304e057df02SPaul Mullowney 23052ef1f0ffSBarry Smith Values: 230687497f52SBarry Smith + `MAT_CUSPARSE_CSR` - Compressed Sparse Row 230787497f52SBarry Smith . `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later). 230887497f52SBarry Smith - `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later). 2309e057df02SPaul Mullowney 2310e057df02SPaul Mullowney Level: intermediate 2311e057df02SPaul Mullowney 23121cc06b55SBarry Smith .seealso: [](ch_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation` 2313e057df02SPaul Mullowney E*/ 2314e057df02SPaul Mullowney 23159371c9d4SSatish Balay typedef enum { 23169371c9d4SSatish Balay MAT_CUSPARSE_CSR, 23179371c9d4SSatish Balay MAT_CUSPARSE_ELL, 23189371c9d4SSatish Balay MAT_CUSPARSE_HYB 23199371c9d4SSatish Balay } MatCUSPARSEStorageFormat; 2320e057df02SPaul Mullowney 2321e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */ 2322e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[]; 2323e057df02SPaul Mullowney 23243f9c0db1SPaul Mullowney /*E 23252ef1f0ffSBarry Smith MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU) 23262692e278SPaul Mullowney matrices whose operation should use a particular storage format. 2327e057df02SPaul Mullowney 23282ef1f0ffSBarry Smith Values: 232987497f52SBarry Smith + `MAT_CUSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel MatMult 233087497f52SBarry Smith . `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel MatMult 233187497f52SBarry Smith . `MAT_CUSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) MatMult 23322ef1f0ffSBarry Smith - `MAT_CUSPARSE_ALL` - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices 2333e057df02SPaul Mullowney 2334e057df02SPaul Mullowney Level: intermediate 2335e057df02SPaul Mullowney 23361cc06b55SBarry Smith .seealso: [](ch_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat` 2337e057df02SPaul Mullowney E*/ 23389371c9d4SSatish Balay typedef enum { 23399371c9d4SSatish Balay MAT_CUSPARSE_MULT_DIAG, 23409371c9d4SSatish Balay MAT_CUSPARSE_MULT_OFFDIAG, 23419371c9d4SSatish Balay MAT_CUSPARSE_MULT, 23429371c9d4SSatish Balay MAT_CUSPARSE_ALL 23439371c9d4SSatish Balay } MatCUSPARSEFormatOperation; 2344e057df02SPaul Mullowney 234510e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 234610e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2347e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat); 2348365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool); 23495f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 23505f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 23515f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **); 23525f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **); 23535f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **); 23545f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **); 23555f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **); 23565f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **); 2357637a0070SStefano Zampini 2358637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 2359637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 2360637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **); 2361637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **); 2362637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **); 2363637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **); 2364637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **); 2365637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **); 2366637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *); 2367d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *); 2368637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat); 23693d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *); 23702d1451d4SHong Zhang 23712d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 23722d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 23739ae82921SPaul Mullowney #endif 23749ae82921SPaul Mullowney 237547d993e7Ssuyashtn #ifdef PETSC_HAVE_HIP 237647d993e7Ssuyashtn /*E 23772ef1f0ffSBarry Smith MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU) 237847d993e7Ssuyashtn matrices. 237947d993e7Ssuyashtn 23802ef1f0ffSBarry Smith Values: 23812ef1f0ffSBarry Smith + `MAT_HIPSPARSE_CSR` - Compressed Sparse Row 23822ef1f0ffSBarry Smith . `MAT_HIPSPARSE_ELL` - Ellpack 23832ef1f0ffSBarry Smith - `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format 238447d993e7Ssuyashtn 238516a05f60SBarry Smith Level: intermediate 238616a05f60SBarry Smith 23871cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation` 238847d993e7Ssuyashtn E*/ 238947d993e7Ssuyashtn 239047d993e7Ssuyashtn typedef enum { 239147d993e7Ssuyashtn MAT_HIPSPARSE_CSR, 239247d993e7Ssuyashtn MAT_HIPSPARSE_ELL, 239347d993e7Ssuyashtn MAT_HIPSPARSE_HYB 239447d993e7Ssuyashtn } MatHIPSPARSEStorageFormat; 239547d993e7Ssuyashtn 239647d993e7Ssuyashtn /* these will be strings associated with enumerated type defined above */ 239747d993e7Ssuyashtn PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[]; 239847d993e7Ssuyashtn 239947d993e7Ssuyashtn /*E 24002ef1f0ffSBarry Smith MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU) 240147d993e7Ssuyashtn matrices whose operation should use a particular storage format. 240247d993e7Ssuyashtn 24032ef1f0ffSBarry Smith Values: 24042ef1f0ffSBarry Smith + `MAT_HIPSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()` 2405eb495b2aSPierre Jolivet . `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel `MatMult()` 24062ef1f0ffSBarry Smith . `MAT_HIPSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()` 24072ef1f0ffSBarry Smith - `MAT_HIPSPARSE_ALL` - sets the storage format for all HIPSPARSE (GPU) matrices 24082ef1f0ffSBarry Smith 240916a05f60SBarry Smith Level: intermediate 241016a05f60SBarry Smith 24111cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat` 241247d993e7Ssuyashtn E*/ 241347d993e7Ssuyashtn typedef enum { 241447d993e7Ssuyashtn MAT_HIPSPARSE_MULT_DIAG, 241547d993e7Ssuyashtn MAT_HIPSPARSE_MULT_OFFDIAG, 241647d993e7Ssuyashtn MAT_HIPSPARSE_MULT, 241747d993e7Ssuyashtn MAT_HIPSPARSE_ALL 241847d993e7Ssuyashtn } MatHIPSPARSEFormatOperation; 241947d993e7Ssuyashtn 242047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 242147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 242247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat); 242347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool); 242447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 242547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 242647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **); 242747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **); 242847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **); 242947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **); 243047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **); 243147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **); 243247d993e7Ssuyashtn 243347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 243447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 243547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **); 243647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **); 243747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **); 243847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **); 243947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **); 244047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **); 244147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *); 244247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *); 244347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat); 24443d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *); 244547d993e7Ssuyashtn #endif 244647d993e7Ssuyashtn 2447d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL) 2448d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2449d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2450d67ff14aSKarl Rupp #endif 2451d67ff14aSKarl Rupp 245254efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW) 2453014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec); 2454014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec); 24552a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *); 245654efbe56SHong Zhang #endif 245754efbe56SHong Zhang 2458d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 2459d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2460d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt); 2461d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *); 2462d24d4204SJose E. Roman #endif 2463d24d4204SJose E. Roman 2464014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *); 2465014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *); 2466014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]); 2467014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]); 2468014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***); 2469014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *); 247019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType); 2471014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]); 2472014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat); 2473d8588912SDave May 24742ce66baaSPierre Jolivet PETSC_EXTERN PetscErrorCode MatFilter(Mat, PetscReal, PetscBool, PetscBool); 24752ce66baaSPierre Jolivet PETSC_DEPRECATED_FUNCTION(3, 20, 0, "MatFilter()", ) static inline PetscErrorCode MatChop(Mat A, PetscReal tol) 24762ce66baaSPierre Jolivet { 24772ce66baaSPierre Jolivet return MatFilter(A, tol, PETSC_FALSE, PETSC_FALSE); 24782ce66baaSPierre Jolivet } 2479e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *); 24804325cce7SMatthew G Knepley 2481b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **); 248253dd7562SDmitry Karpeev 2483c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat); 2484c094ef40SMatthew G. Knepley 2485539c167fSBarry Smith PETSC_INTERN PetscErrorCode MatHeaderMerge(Mat, Mat *); 2486539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *); 24871a2c6b5cSJunchao Zhang 24887ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *); 248972833a62Smarkadams4 24902d776b49SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, Mat *); 249158c11ad4SPierre Jolivet PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat, PetscBool); 2492ad6ad4e1SHansol Suh 2493d16ceb75SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *); 249423a5497aSJed Brown #endif 2495