12eac72dbSBarry Smith /* 22eac72dbSBarry Smith Include file for the matrix component of PETSc 32eac72dbSBarry Smith */ 4a4963045SJacob Faibussowitsch #pragma once 5ac09b921SBarry Smith 62c8e378dSBarry Smith #include <petscvec.h> 72eac72dbSBarry Smith 8ac09b921SBarry Smith /* SUBMANSEC = Mat */ 9ac09b921SBarry Smith 10d9274352SBarry Smith /*S 118f6c3df8SBarry Smith Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without 12af27ebaaSBarry Smith an explicit sparse representation (such as matrix-free operators). Also used to hold representations of graphs 13af27ebaaSBarry Smith for graph operations such as coloring, `MatColoringCreate()` 142eac72dbSBarry Smith 15d91e6319SBarry Smith Level: beginner 16d91e6319SBarry Smith 172ef1f0ffSBarry Smith Note: 181cc06b55SBarry Smith See [](doc_matrix), [](ch_matrices) and `MatType` for available matrix types 192ef1f0ffSBarry Smith 201cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()` 21d9274352SBarry Smith S*/ 22d9274352SBarry Smith typedef struct _p_Mat *Mat; 23d9274352SBarry Smith 2476bdecfbSBarry Smith /*J 258f6c3df8SBarry Smith MatType - String with the name of a PETSc matrix type 26d9274352SBarry Smith 27d9274352SBarry Smith Level: beginner 28d9274352SBarry Smith 292ef1f0ffSBarry Smith Note: 302ef1f0ffSBarry Smith [](doc_matrix) for a table of available matrix types 312ef1f0ffSBarry Smith 321cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()` 3376bdecfbSBarry Smith J*/ 3419fd82e9SBarry Smith typedef const char *MatType; 35273d9f13SBarry Smith #define MATSAME "same" 365a11e1b2SBarry Smith #define MATMAIJ "maij" 37273d9f13SBarry Smith #define MATSEQMAIJ "seqmaij" 38273d9f13SBarry Smith #define MATMPIMAIJ "mpimaij" 3949bd79ccSDebojyoti Ghosh #define MATKAIJ "kaij" 4049bd79ccSDebojyoti Ghosh #define MATSEQKAIJ "seqkaij" 4149bd79ccSDebojyoti Ghosh #define MATMPIKAIJ "mpikaij" 42273d9f13SBarry Smith #define MATIS "is" 435a11e1b2SBarry Smith #define MATAIJ "aij" 44273d9f13SBarry Smith #define MATSEQAIJ "seqaij" 45273d9f13SBarry Smith #define MATMPIAIJ "mpiaij" 465a11e1b2SBarry Smith #define MATAIJCRL "aijcrl" 475a11e1b2SBarry Smith #define MATSEQAIJCRL "seqaijcrl" 485a11e1b2SBarry Smith #define MATMPIAIJCRL "mpiaijcrl" 499ae82921SPaul Mullowney #define MATAIJCUSPARSE "aijcusparse" 509ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE "seqaijcusparse" 519ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE "mpiaijcusparse" 5247d993e7Ssuyashtn #define MATAIJHIPSPARSE "aijhipsparse" 5347d993e7Ssuyashtn #define MATSEQAIJHIPSPARSE "seqaijhipsparse" 5447d993e7Ssuyashtn #define MATMPIAIJHIPSPARSE "mpiaijhipsparse" 558c3ff71bSJunchao Zhang #define MATAIJKOKKOS "aijkokkos" 568c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS "seqaijkokkos" 578c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS "mpiaijkokkos" 58d67ff14aSKarl Rupp #define MATAIJVIENNACL "aijviennacl" 59d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL "seqaijviennacl" 60d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL "mpiaijviennacl" 615a11e1b2SBarry Smith #define MATAIJPERM "aijperm" 625a11e1b2SBarry Smith #define MATSEQAIJPERM "seqaijperm" 635a11e1b2SBarry Smith #define MATMPIAIJPERM "mpiaijperm" 644dfdc2d9SRichard Tran Mills #define MATAIJSELL "aijsell" 654dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL "seqaijsell" 664dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL "mpiaijsell" 674a2a386eSRichard Tran Mills #define MATAIJMKL "aijmkl" 684a2a386eSRichard Tran Mills #define MATSEQAIJMKL "seqaijmkl" 694a2a386eSRichard Tran Mills #define MATMPIAIJMKL "mpiaijmkl" 70b5b72c8aSIrina Sokolova #define MATBAIJMKL "baijmkl" 71b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL "seqbaijmkl" 72b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL "mpibaijmkl" 73273d9f13SBarry Smith #define MATSHELL "shell" 74c1fff1c6SRichard Tran Mills #define MATCENTERING "centering" 755a11e1b2SBarry Smith #define MATDENSE "dense" 76637a0070SStefano Zampini #define MATDENSECUDA "densecuda" 7747d993e7Ssuyashtn #define MATDENSEHIP "densehip" 78209238afSKris Buschelman #define MATSEQDENSE "seqdense" 79bfc799aaSStefano Zampini #define MATSEQDENSECUDA "seqdensecuda" 8047d993e7Ssuyashtn #define MATSEQDENSEHIP "seqdensehip" 81273d9f13SBarry Smith #define MATMPIDENSE "mpidense" 82637a0070SStefano Zampini #define MATMPIDENSECUDA "mpidensecuda" 8347d993e7Ssuyashtn #define MATMPIDENSEHIP "mpidensehip" 84db31f6deSJed Brown #define MATELEMENTAL "elemental" 85d24d4204SJose E. Roman #define MATSCALAPACK "scalapack" 865a11e1b2SBarry Smith #define MATBAIJ "baij" 87273d9f13SBarry Smith #define MATSEQBAIJ "seqbaij" 88273d9f13SBarry Smith #define MATMPIBAIJ "mpibaij" 89273d9f13SBarry Smith #define MATMPIADJ "mpiadj" 905a11e1b2SBarry Smith #define MATSBAIJ "sbaij" 91273d9f13SBarry Smith #define MATSEQSBAIJ "seqsbaij" 92273d9f13SBarry Smith #define MATMPISBAIJ "mpisbaij" 93cebc7f6cSBarry Smith #define MATMFFD "mffd" 94c8a8475eSBarry Smith #define MATNORMAL "normal" 95c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN "normalh" 96ab92ecdeSBarry Smith #define MATLRC "lrc" 972a6744ebSBarry Smith #define MATSCATTER "scatter" 98421e10b8SBarry Smith #define MATBLOCKMAT "blockmat" 99793850ffSBarry Smith #define MATCOMPOSITE "composite" 1001f8c7532SHong Zhang #define MATFFT "fft" 1011f8c7532SHong Zhang #define MATFFTW "fftw" 102e133240eSMatthew G Knepley #define MATSEQCUFFT "seqcufft" 10347d993e7Ssuyashtn #define MATSEQHIPFFT "seqhipfft" 104edd03b47SJacob Faibussowitsch #define MATTRANSPOSEMAT PETSC_DEPRECATED_MACRO(3, 18, 0, "MATTRANSPOSEVIRTUAL", ) "transpose" 105013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL "transpose" 106013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose" 10772ca8751SBarry Smith #define MATSCHURCOMPLEMENT "schurcomplement" 1081d6018f0SLisandro Dalcin #define MATPYTHON "python" 10963c07aadSStefano Zampini #define MATHYPRE "hypre" 110f91d8e95SBarry Smith #define MATHYPRESTRUCT "hyprestruct" 111a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT "hypresstruct" 112ee1cef2cSJed Brown #define MATSUBMATRIX "submatrix" 1132c0dbf93SJed Brown #define MATLOCALREF "localref" 114d8588912SDave May #define MATNEST "nest" 115c094ef40SMatthew G. Knepley #define MATPREALLOCATOR "preallocator" 116d4002b98SHong Zhang #define MATSELL "sell" 117d4002b98SHong Zhang #define MATSEQSELL "seqsell" 118d4002b98SHong Zhang #define MATMPISELL "mpisell" 1192d1451d4SHong Zhang #define MATSELLCUDA "sellcuda" 1202d1451d4SHong Zhang #define MATSEQSELLCUDA "seqsellcuda" 1212d1451d4SHong Zhang #define MATMPISELLCUDA "mpisellcuda" 122773bf0f6SHong Zhang #define MATSELLHIP "sellhip" 123773bf0f6SHong Zhang #define MATSEQSELLHIP "seqsellhip" 124773bf0f6SHong Zhang #define MATMPISELLHIP "mpisellhip" 125a3b2e22bSHong Zhang #define MATDUMMY "dummy" 126cd929ea3SAlp Dener #define MATLMVM "lmvm" 12778e4361aSAlp Dener #define MATLMVMDFP "lmvmdfp" 128bbb72809SHansol Suh #define MATLMVMDDFP "lmvmddfp" 12978e4361aSAlp Dener #define MATLMVMBFGS "lmvmbfgs" 130bbb72809SHansol Suh #define MATLMVMDBFGS "lmvmdbfgs" 131bbb72809SHansol Suh #define MATLMVMDQN "lmvmdqn" 13278e4361aSAlp Dener #define MATLMVMSR1 "lmvmsr1" 133864588a7SAlp Dener #define MATLMVMBROYDEN "lmvmbroyden" 134864588a7SAlp Dener #define MATLMVMBADBROYDEN "lmvmbadbroyden" 135864588a7SAlp Dener #define MATLMVMSYMBROYDEN "lmvmsymbroyden" 136864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN "lmvmsymbadbroyden" 137864588a7SAlp Dener #define MATLMVMDIAGBROYDEN "lmvmdiagbroyden" 1383423f386SBarry Smith #define MATCONSTANTDIAGONAL "constantdiagonal" 139345a4b08SToby Isaac #define MATDIAGONAL "diagonal" 140c7a4214aSPierre Jolivet #define MATHTOOL "htool" 14153022affSStefano Zampini #define MATH2OPUS "h2opus" 142773941d6SBarry Smith 14376bdecfbSBarry Smith /*J 144af27ebaaSBarry Smith MatSolverType - String with the name of a PETSc factorization-based matrix solver type. 1459989ab13SBarry Smith 146c2b89b5dSBarry Smith For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc 1479989ab13SBarry Smith 1489989ab13SBarry Smith Level: beginner 1499989ab13SBarry Smith 1502ef1f0ffSBarry Smith Note: 15116a05f60SBarry Smith `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as 15216a05f60SBarry Smith a ./configure option to install them 153c7ccbb75SBarry Smith 1541cc06b55SBarry Smith .seealso: [](sec_matfactor), [](ch_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()` 15576bdecfbSBarry Smith J*/ 156ea799195SBarry Smith typedef const char *MatSolverType; 1572692d6eeSBarry Smith #define MATSOLVERSUPERLU "superlu" 1582692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST "superlu_dist" 15908f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK "strumpack" 1602692d6eeSBarry Smith #define MATSOLVERUMFPACK "umfpack" 16120db9a53SJed Brown #define MATSOLVERCHOLMOD "cholmod" 162d89f5e7aSBarry Smith #define MATSOLVERKLU "klu" 163d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL "elemental" 164d24d4204SJose E. Roman #define MATSOLVERSCALAPACK "scalapack" 1652692d6eeSBarry Smith #define MATSOLVERESSL "essl" 1662692d6eeSBarry Smith #define MATSOLVERLUSOL "lusol" 1672692d6eeSBarry Smith #define MATSOLVERMUMPS "mumps" 168d615f992SSatish Balay #define MATSOLVERMKL_PARDISO "mkl_pardiso" 169d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO "mkl_cpardiso" 1702692d6eeSBarry Smith #define MATSOLVERPASTIX "pastix" 1712692d6eeSBarry Smith #define MATSOLVERMATLAB "matlab" 1722692d6eeSBarry Smith #define MATSOLVERPETSC "petsc" 1732692d6eeSBarry Smith #define MATSOLVERBAS "bas" 1749ae82921SPaul Mullowney #define MATSOLVERCUSPARSE "cusparse" 175bfc799aaSStefano Zampini #define MATSOLVERCUDA "cuda" 17647d993e7Ssuyashtn #define MATSOLVERHIPSPARSE "hipsparse" 17747d993e7Ssuyashtn #define MATSOLVERHIP "hip" 178930e68a5SMark Adams #define MATSOLVERKOKKOS "kokkos" 179a2fc1e05SToby Isaac #define MATSOLVERSPQR "spqr" 1801dd4f53aSPierre Jolivet #define MATSOLVERHTOOL "htool" 181c0cdd4a1SDahai Guo 182b24902e0SBarry Smith /*E 183b24902e0SBarry Smith MatFactorType - indicates what type of factorization is requested 184b24902e0SBarry Smith 1852ef1f0ffSBarry Smith Values: 1862ef1f0ffSBarry Smith + `MAT_FACTOR_LU` - LU factorization 1872ef1f0ffSBarry Smith . `MAT_FACTOR_CHOLESKY` - Cholesky factorization 1882ef1f0ffSBarry Smith . `MAT_FACTOR_ILU` - ILU factorization 1892ef1f0ffSBarry Smith . `MAT_FACTOR_ICC` - incomplete Cholesky factorization 1902ef1f0ffSBarry Smith . `MAT_FACTOR_ILUDT` - ILU factorization with drop tolerance 1912ef1f0ffSBarry Smith - `MAT_FACTOR_QR` - QR factorization 192b24902e0SBarry Smith 19316a05f60SBarry Smith Level: beginner 19416a05f60SBarry Smith 1951cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()` 196b24902e0SBarry Smith E*/ 1979371c9d4SSatish Balay typedef enum { 1989371c9d4SSatish Balay MAT_FACTOR_NONE, 1999371c9d4SSatish Balay MAT_FACTOR_LU, 2009371c9d4SSatish Balay MAT_FACTOR_CHOLESKY, 2019371c9d4SSatish Balay MAT_FACTOR_ILU, 2029371c9d4SSatish Balay MAT_FACTOR_ICC, 2039371c9d4SSatish Balay MAT_FACTOR_ILUDT, 2049371c9d4SSatish Balay MAT_FACTOR_QR, 2059371c9d4SSatish Balay MAT_FACTOR_NUM_TYPES 2069371c9d4SSatish Balay } MatFactorType; 207014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[]; 208e92e720dSBarry Smith 209ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *); 210ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *); 211f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *); 212edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 15, 0, "MatFactorGetCanUseOrdering()", ) static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b) 213d71ae5a4SJacob Faibussowitsch { 2149371c9d4SSatish Balay return MatFactorGetCanUseOrdering(A, b); 2159371c9d4SSatish Balay } 216ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *); 217014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *); 2187abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType); 2198434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode(MatSolverFn)(Mat, MatFactorType, Mat *); 2208434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatSolverFn *MatSolverFunction; 22107e0ed13SBarry Smith 2228434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFn *); 2238434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFn **); 224edd03b47SJacob Faibussowitsch typedef MatSolverType MatSolverPackage PETSC_DEPRECATED_TYPEDEF(3, 9, 0, "MatSolverType", ); 2258434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeRegister()", ) static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFn *f) 226d71ae5a4SJacob Faibussowitsch { 2279371c9d4SSatish Balay return MatSolverTypeRegister(stype, mtype, ftype, f); 2289371c9d4SSatish Balay } 2298434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeGet()", ) static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFn **f) 230d71ae5a4SJacob Faibussowitsch { 2319371c9d4SSatish Balay return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f); 2329371c9d4SSatish Balay } 2339989ab13SBarry Smith 2344222ddf1SHong Zhang /*E 23595bd0b28SBarry Smith MatProductType - indicates what type of matrix product to compute 2364222ddf1SHong Zhang 2372ef1f0ffSBarry Smith Values: 2382ef1f0ffSBarry Smith + `MATPRODUCT_AB` - product of two matrices 2392ef1f0ffSBarry Smith . `MATPRODUCT_AtB` - product of the transpose of a given matrix with a matrix 2402ef1f0ffSBarry Smith . `MATPRODUCT_ABt` - product of a matrix with the transpose of another given matrix 2412ef1f0ffSBarry Smith . `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself 2422ef1f0ffSBarry Smith . `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix 2432ef1f0ffSBarry Smith - `MATPRODUCT_ABC` - the product of three matrices 2442ef1f0ffSBarry Smith 24516a05f60SBarry Smith Level: beginner 24616a05f60SBarry Smith 2471cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatProductSetType()` 2484222ddf1SHong Zhang E*/ 2499371c9d4SSatish Balay typedef enum { 2509371c9d4SSatish Balay MATPRODUCT_UNSPECIFIED = 0, 2519371c9d4SSatish Balay MATPRODUCT_AB, 2529371c9d4SSatish Balay MATPRODUCT_AtB, 2539371c9d4SSatish Balay MATPRODUCT_ABt, 2549371c9d4SSatish Balay MATPRODUCT_PtAP, 2559371c9d4SSatish Balay MATPRODUCT_RARt, 2569371c9d4SSatish Balay MATPRODUCT_ABC 2579371c9d4SSatish Balay } MatProductType; 258544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[]; 2594222ddf1SHong Zhang 2604222ddf1SHong Zhang /*J 2614222ddf1SHong Zhang MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation 2624222ddf1SHong Zhang 2634222ddf1SHong Zhang Level: beginner 2644222ddf1SHong Zhang 2651cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType` 2664222ddf1SHong Zhang J*/ 2674222ddf1SHong Zhang typedef const char *MatProductAlgorithm; 2683e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT "default" 2693e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED "sorted" 2703e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE "scalable" 2713e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST "scalable_fast" 2723e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP "heap" 2733e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP "btheap" 2743e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED "llcondensed" 2753e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE "rowmerge" 2763e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT "outerproduct" 2773e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB "at*b" 2783e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP "rap" 2793e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE "nonscalable" 2803e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI "seqmpi" 2813e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND "backend" 2823e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING "overlapping" 2833e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED "merged" 2843e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE "allatonce" 2853e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged" 2863e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV "allgatherv" 2873e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC "cyclic" 2883e662e0bSHong Zhang #define MATPRODUCTALGORITHMHYPRE "hypre" 2894222ddf1SHong Zhang 2904222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *); 2914222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat); 2924222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType); 2934222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm); 2948fcac130SJose E. Roman PETSC_EXTERN PetscErrorCode MatProductGetAlgorithm(Mat, MatProductAlgorithm *); 2954222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal); 2964222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat); 2974222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat); 2984222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat); 2994222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat); 3004417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat); 3016718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer); 302c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *); 303c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *); 3044222ddf1SHong Zhang 305c06d978dSMatthew Knepley /* Logging support */ 3060700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */ 307014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID; 308335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID; 309014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID; 310014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID; 311014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID; 312014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID; 313014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID; 314014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID; 315c06d978dSMatthew Knepley 316ceb03754SKris Buschelman /*E 3172ef1f0ffSBarry Smith MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions 318cf37664fSBarry Smith are to be reused to store the new matrix values. 319cf37664fSBarry Smith 3202ef1f0ffSBarry Smith Values: 3212ef1f0ffSBarry Smith + `MAT_INITIAL_MATRIX` - create a new matrix 3222ef1f0ffSBarry Smith . `MAT_REUSE_MATRIX` - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX` 3232ef1f0ffSBarry Smith . `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions) 3242ef1f0ffSBarry Smith - `MAT_IGNORE_MATRIX` - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions) 325ceb03754SKris Buschelman 326ceb03754SKris Buschelman Level: beginner 327ceb03754SKris Buschelman 3281cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()` 329ceb03754SKris Buschelman E*/ 3309371c9d4SSatish Balay typedef enum { 3319371c9d4SSatish Balay MAT_INITIAL_MATRIX, 3329371c9d4SSatish Balay MAT_REUSE_MATRIX, 3339371c9d4SSatish Balay MAT_IGNORE_MATRIX, 3349371c9d4SSatish Balay MAT_INPLACE_MATRIX 3359371c9d4SSatish Balay } MatReuse; 336ceb03754SKris Buschelman 3375494a064SHong Zhang /*E 3382ef1f0ffSBarry Smith MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()` 3392ef1f0ffSBarry Smith include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`. 3405494a064SHong Zhang 3412ef1f0ffSBarry Smith Values: 3422ef1f0ffSBarry Smith + `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values 3432ef1f0ffSBarry Smith - `MAT_GET_VALUES` - copy the matrix values 3442ef1f0ffSBarry Smith 34595bd0b28SBarry Smith Level: developer 34695bd0b28SBarry Smith 3472ef1f0ffSBarry Smith Developer Note: 3482ef1f0ffSBarry Smith Why is not just a boolean used for this information? 3492ef1f0ffSBarry Smith 3501cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()` 3515494a064SHong Zhang E*/ 3529371c9d4SSatish Balay typedef enum { 3539371c9d4SSatish Balay MAT_DO_NOT_GET_VALUES, 3549371c9d4SSatish Balay MAT_GET_VALUES 3559371c9d4SSatish Balay } MatCreateSubMatrixOption; 3565494a064SHong Zhang 357607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void); 3584bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatFinalizePackage(void); 359c06d978dSMatthew Knepley 360014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *); 36177433607SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFromOptions(MPI_Comm, const char *, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 362014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt); 36319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType); 3640d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *); 3650d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType); 366014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat); 367fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]); 368bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat)); 36923bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]); 370014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]); 37126cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]); 37226cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]); 373014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]); 374014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]); 3755d5d24bbSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatGetState(Mat, PetscObjectState *); 37684d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool); 377f69a0ea3SMatthew Knepley 378140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList; 379140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList; 380140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList; 38128988994SBarry Smith 3823b224e63SBarry Smith /*E 383aa6c7ce3SBarry Smith MatStructure - Indicates if two matrices have the same nonzero structure 3843b224e63SBarry Smith 3852ef1f0ffSBarry Smith Values: 3862ef1f0ffSBarry Smith + `SAME_NONZERO_PATTERN` - the two matrices have identical nonzero patterns 3872ef1f0ffSBarry Smith . `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns 3882ef1f0ffSBarry Smith . `SUBSET_NONZERO_PATTERN` - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix 3892ef1f0ffSBarry Smith - `UNKNOWN_NONZERO_PATTERN` - there is no known relationship between the nonzero patterns. In this case the implementations 3902ef1f0ffSBarry Smith may try to detect a relationship to optimize the operation 391531d0c6aSBarry Smith 39216a05f60SBarry Smith Level: beginner 39316a05f60SBarry Smith 394af27ebaaSBarry Smith Note: 395af27ebaaSBarry Smith Certain matrix operations (such as `MatAXPY()`) can run much faster if the sparsity pattern of the matrices are the same. But actually determining if 396af27ebaaSBarry Smith the patterns are the same may be costly. This provides a way for users who know something about the sparsity patterns to provide this information 397af27ebaaSBarry Smith to certain PETSc routines. 398af27ebaaSBarry Smith 3991cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()` 4003b224e63SBarry Smith E*/ 4019371c9d4SSatish Balay typedef enum { 4029371c9d4SSatish Balay DIFFERENT_NONZERO_PATTERN, 4039371c9d4SSatish Balay SUBSET_NONZERO_PATTERN, 4049371c9d4SSatish Balay SAME_NONZERO_PATTERN, 4059371c9d4SSatish Balay UNKNOWN_NONZERO_PATTERN 4069371c9d4SSatish Balay } MatStructure; 407d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[]; 4083b224e63SBarry Smith 4099779e05dSSatish Balay #if defined PETSC_HAVE_MKL_SPARSE 410ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 411ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 41280095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 413ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 41480095d54SIrina Sokolova #endif 415cd929ea3SAlp Dener 4164bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 4174bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 4184bf303faSJacob Faibussowitsch 419d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 420d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 421d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]); 422d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 42307e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *); 42407e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *); 42507e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *); 42607e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt); 427b921024eSHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *); 42880095d54SIrina Sokolova 4294bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 4304bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 431fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *); 432fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetSeqSELL(Mat, Mat *, Mat *, const PetscInt *[]); 4334bf303faSJacob Faibussowitsch 434014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 435014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 436014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 437014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 438014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 4398f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 4406a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]); 441014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *); 4423b00a383SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *); 4433b00a383SHong Zhang 444014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 445014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 446014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 4477e8381f9SStefano Zampini 448e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]); 44982a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]); 4507e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode); 451d21a29f3SJed Brown 452014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *); 453014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 454d21a29f3SJed Brown 455014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 456014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 45738f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 458014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 4594cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]); 460dfb205c3SBarry Smith 461014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *); 462c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *); 463014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *); 464c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *); 465986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *); 466267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *); 467bcf2175cSMatthew Knepley PETSC_EXTERN PetscErrorCode MatLRCSetMats(Mat, Mat, Mat, Vec, Mat); 468c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *); 469014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 470014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 471c0cdd4a1SDahai Guo 472014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *); 473014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter); 474014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *); 475014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *); 476014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat); 477014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat); 4789371c9d4SSatish Balay typedef enum { 4799371c9d4SSatish Balay MAT_COMPOSITE_MERGE_RIGHT, 4809371c9d4SSatish Balay MAT_COMPOSITE_MERGE_LEFT 4819371c9d4SSatish Balay } MatCompositeMergeType; 4828c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType); 483014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *); 4840da935d5SPierre Jolivet /*E 4850da935d5SPierre Jolivet MatCompositeType - indicates what type of `MATCOMPOSITE` is used 4860da935d5SPierre Jolivet 4870da935d5SPierre Jolivet Values: 4880da935d5SPierre Jolivet + `MAT_COMPOSITE_ADDITIVE` - sum of matrices (default) 4890da935d5SPierre Jolivet - `MAT_COMPOSITE_MULTIPLICATIVE` - product of matrices 4900da935d5SPierre Jolivet 4910da935d5SPierre Jolivet Level: beginner 4920da935d5SPierre Jolivet 4930da935d5SPierre Jolivet .seealso: [](ch_matrices), `MATCOMPOSITE`, `MatCompositeSetType()`, `MatCompositeGetType()` 4940da935d5SPierre Jolivet E*/ 4959371c9d4SSatish Balay typedef enum { 4969371c9d4SSatish Balay MAT_COMPOSITE_ADDITIVE, 4979371c9d4SSatish Balay MAT_COMPOSITE_MULTIPLICATIVE 4989371c9d4SSatish Balay } MatCompositeType; 499014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType); 5006dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *); 5013b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure); 5023b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *); 5036d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *); 5048b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *); 50503049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *); 5066d7c1e57SBarry Smith 50719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *); 508014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *); 509dedccee8SHong Zhang 510014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *); 5118060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *); 512d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *); 51306511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *); 514fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *); 51565f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *); 51654e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *); 51754e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS); 518014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *); 5193423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *); 520345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatCreateDiagonal(Vec, Mat *); 521345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetDiagonal(Mat, Vec *); 522345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreDiagonal(Mat, Vec *); 523345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetInverseDiagonal(Mat, Vec *); 524345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreInverseDiagonal(Mat, Vec *); 5251472f72bSBarry Smith 526978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE) 527d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 528978814f1SStefano Zampini #endif 529978814f1SStefano Zampini 530014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]); 531ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]); 532cc4c1da9SBarry Smith PETSC_EXTERN PetscErrorCode MatPythonCreate(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const char[], Mat *); 5331d6018f0SLisandro Dalcin 534846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat); 535014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat); 536014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *); 537e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *); 53821c89e3eSBarry Smith 539014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat); 540014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat); 541014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat); 542014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *); 543014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *); 544713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **); 5450da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *); 546479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat); 5478a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *); 54820c04d79SPierre Jolivet PETSC_EXTERN PetscErrorCode MatComputeVariableBlockEnvelope(Mat); 54999cafbc1SBarry Smith 550014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 5518a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode); 552014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 553014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]); 554014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]); 555014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]); 55673a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom); 55784cb2905SBarry Smith 5582ef4de8bSBarry Smith /*S 5592ef1f0ffSBarry Smith MatStencil - Data structure (C struct) for storing information about rows and 5602ef1f0ffSBarry Smith columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()` 56162ef0227SBarry Smith 5622ef1f0ffSBarry Smith Level: beginner 5632ef1f0ffSBarry Smith 5642ef1f0ffSBarry Smith Notes: 56562ef0227SBarry Smith The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored). 56615229ffcSPierre Jolivet The c represents the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored. 56762ef0227SBarry Smith 56887497f52SBarry Smith For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`. 569be479b30SJed Brown 5702ef1f0ffSBarry Smith For staggered grids, see `DMStagStencil` 5712ef4de8bSBarry Smith 5722ef1f0ffSBarry Smith Fortran Note: 5732ef1f0ffSBarry Smith See `MatSetValuesStencil()` for details. 5742ef4de8bSBarry Smith 5751cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`, 5762ef1f0ffSBarry Smith `DMStagStencil` 5772ef4de8bSBarry Smith S*/ 578435da068SBarry Smith typedef struct { 579c1ac3661SBarry Smith PetscInt k, j, i, c; 580435da068SBarry Smith } MatStencil; 5812ef4de8bSBarry Smith 582014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 583014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 584014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt); 585435da068SBarry Smith 586d91e6319SBarry Smith /*E 5872ef1f0ffSBarry Smith MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use 588d91e6319SBarry Smith 5892ef1f0ffSBarry Smith Values: 5902ef1f0ffSBarry Smith + `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix 5912ef1f0ffSBarry Smith - `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted 5922ef1f0ffSBarry Smith 59316a05f60SBarry Smith Level: beginner 59416a05f60SBarry Smith 5951cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()` 596d91e6319SBarry Smith E*/ 5979371c9d4SSatish Balay typedef enum { 5989371c9d4SSatish Balay MAT_FLUSH_ASSEMBLY = 1, 5999371c9d4SSatish Balay MAT_FINAL_ASSEMBLY = 0 6009371c9d4SSatish Balay } MatAssemblyType; 6014f58015eSStefano Zampini 602014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType); 603014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType); 604014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *); 6054f9c727eSBarry Smith 606d91e6319SBarry Smith /*E 6072ef1f0ffSBarry Smith MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage 608d91e6319SBarry Smith 609d91e6319SBarry Smith Level: beginner 610d91e6319SBarry Smith 6112ef1f0ffSBarry Smith Note: 6122ef1f0ffSBarry Smith See `MatSetOption()` for the use of the options 6132ef1f0ffSBarry Smith 6142ef1f0ffSBarry Smith Developer Note: 61595452b02SPatrick Sanan Entries that are negative need not be called collectively by all processes. 616382164b0SBarry Smith 6171cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetOption()` 618d91e6319SBarry Smith E*/ 6199371c9d4SSatish Balay typedef enum { 6209371c9d4SSatish Balay MAT_OPTION_MIN = -3, 621c5e4d11fSDmitry Karpeev MAT_UNUSED_NONZERO_LOCATION_ERR = -2, 62292d4d306SBarry Smith MAT_ROW_ORIENTED = -1, 623382164b0SBarry Smith MAT_SYMMETRIC = 1, 624382164b0SBarry Smith MAT_STRUCTURALLY_SYMMETRIC = 2, 6258c78258cSHong Zhang MAT_FORCE_DIAGONAL_ENTRIES = 3, 626382164b0SBarry Smith MAT_IGNORE_OFF_PROC_ENTRIES = 4, 627382164b0SBarry Smith MAT_USE_HASH_TABLE = 5, 628382164b0SBarry Smith MAT_KEEP_NONZERO_PATTERN = 6, 629382164b0SBarry Smith MAT_IGNORE_ZERO_ENTRIES = 7, 630382164b0SBarry Smith MAT_USE_INODES = 8, 631382164b0SBarry Smith MAT_HERMITIAN = 9, 632382164b0SBarry Smith MAT_SYMMETRY_ETERNAL = 10, 633c5e4d11fSDmitry Karpeev MAT_NEW_NONZERO_LOCATION_ERR = 11, 634382164b0SBarry Smith MAT_IGNORE_LOWER_TRIANGULAR = 12, 635382164b0SBarry Smith MAT_ERROR_LOWER_TRIANGULAR = 13, 636382164b0SBarry Smith MAT_GETROW_UPPERTRIANGULAR = 14, 637382164b0SBarry Smith MAT_SPD = 15, 63892d4d306SBarry Smith MAT_NO_OFF_PROC_ZERO_ROWS = 16, 63992d4d306SBarry Smith MAT_NO_OFF_PROC_ENTRIES = 17, 64092d4d306SBarry Smith MAT_NEW_NONZERO_LOCATIONS = 18, 641c5e4d11fSDmitry Karpeev MAT_NEW_NONZERO_ALLOCATION_ERR = 19, 642c5e4d11fSDmitry Karpeev MAT_SUBSET_OFF_PROC_ENTRIES = 20, 643c10200c1SHong Zhang MAT_SUBMAT_SINGLEIS = 21, 644957cac9fSHong Zhang MAT_STRUCTURE_ONLY = 22, 645071fcb05SBarry Smith MAT_SORTED_FULL = 23, 6461a2c6b5cSJunchao Zhang MAT_FORM_EXPLICIT_TRANSPOSE = 24, 647b94d7dedSBarry Smith MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25, 648b94d7dedSBarry Smith MAT_SPD_ETERNAL = 26, 6499371c9d4SSatish Balay MAT_OPTION_MAX = 27 6509371c9d4SSatish Balay } MatOption; 651e057df02SPaul Mullowney 6520f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions; 653014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOption(Mat, MatOption, PetscBool); 6547d68702bSBarry Smith PETSC_EXTERN PetscErrorCode MatGetOption(Mat, MatOption, PetscBool *); 655856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode MatPropagateSymmetryOptions(Mat, Mat); 65619fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetType(Mat, MatType *); 65784cb2905SBarry Smith 658014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 659014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 660014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 661014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowUpperTriangular(Mat); 662014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowUpperTriangular(Mat); 663014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnVector(Mat, Vec, PetscInt); 6648c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetArray(Mat, PetscScalar *[]); 6658f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]); 666d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]); 6678c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArray(Mat, PetscScalar *[]); 6688f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]); 669d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]); 67021e72a00SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *); 671bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 6724099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetType(Mat, MatType); 673ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatSeqAIJKron(Mat, Mat, MatReuse, Mat *); 674388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *)); 6754099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList; 676cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJGetArray(Mat, PetscScalar *[]); 677cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJRestoreArray(Mat, PetscScalar *[]); 6788397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJGetArray(Mat, PetscScalar *[]); 6798397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]); 6808c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArray(Mat, PetscScalar *[]); 6818c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArray(Mat, PetscScalar *[]); 682d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDensePlaceArray(Mat, const PetscScalar[]); 683d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseReplaceArray(Mat, const PetscScalar[]); 684d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseResetArray(Mat); 6858572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArrayRead(Mat, const PetscScalar *[]); 6868572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayRead(Mat, const PetscScalar *[]); 6876947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetArrayWrite(Mat, PetscScalar *[]); 6886947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWrite(Mat, PetscScalar *[]); 689cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *); 690cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]); 691cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *); 692cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]); 693cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *); 694cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]); 695014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSize(Mat, PetscInt *); 696014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSize(Mat, PetscInt); 697014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSizes(Mat, PetscInt *, PetscInt *); 698014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizes(Mat, PetscInt, PetscInt); 69933d57670SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizesFromMats(Mat, Mat, Mat); 7006e25ca73SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVariableBlockSizes(Mat, PetscInt, const PetscInt[]); 7016e25ca73SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt *[]); 7020da83c2eSBarry Smith 70386aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]); 70486aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]); 7056947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *); 7066947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *); 7076947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *); 7086947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *); 7096947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *); 7106947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *); 711a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 7125ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *); 7131620fd73SBarry Smith 714014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec); 715014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec); 716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec); 717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec); 718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec); 719014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *); 720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *); 721014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec); 722014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec); 723014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat); 724bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat); 725eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat); 726f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec); 727f5edf698SHong Zhang 728d91e6319SBarry Smith /*E 729d91e6319SBarry Smith MatDuplicateOption - Indicates if a duplicated sparse matrix should have 730d91e6319SBarry Smith its numerical values copied over or just its nonzero structure. 731d91e6319SBarry Smith 7322ef1f0ffSBarry Smith Values: 7332ef1f0ffSBarry Smith + `MAT_DO_NOT_COPY_VALUES` - Create a matrix using the same nonzero pattern as the original matrix, 7342ef1f0ffSBarry Smith with zeros for the numerical values 7352ef1f0ffSBarry Smith . `MAT_COPY_VALUES` - Create a matrix with the same nonzero pattern as the original matrix 7362ef1f0ffSBarry Smith and with the same numerical values. 7372ef1f0ffSBarry Smith - `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix 7382ef1f0ffSBarry Smith and does not copy it, using zeros for the numerical values. The parent and 7392ef1f0ffSBarry Smith child matrices will share their index (i and j) arrays, and you cannot 7402ef1f0ffSBarry Smith insert new nonzero entries into either matrix 7410018da39SRichard Tran Mills 74216a05f60SBarry Smith Level: beginner 74316a05f60SBarry Smith 74487497f52SBarry Smith Note: 74587497f52SBarry Smith Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in 74687497f52SBarry Smith this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified. 74770dcbbb9SBarry Smith 7481cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicate()` 749d91e6319SBarry Smith E*/ 7509371c9d4SSatish Balay typedef enum { 7519371c9d4SSatish Balay MAT_DO_NOT_COPY_VALUES, 7529371c9d4SSatish Balay MAT_COPY_VALUES, 7539371c9d4SSatish Balay MAT_SHARE_NONZERO_PATTERN 7549371c9d4SSatish Balay } MatDuplicateOption; 7552e8a6d31SBarry Smith 75619fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *); 757014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *); 75894a9d846SBarry Smith 759014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure); 760014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer); 761014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *); 762014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *); 763014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *); 764014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *); 765014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *); 766b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *); 767b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *); 768014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *); 769014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer); 7707b80b807SBarry Smith 7711a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7721a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7731a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 7741a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 775d4fbbf0eSBarry Smith 776d91e6319SBarry Smith /*S 77787497f52SBarry Smith MatInfo - Context of matrix information, used with `MatGetInfo()` 778d91e6319SBarry Smith 779d91e6319SBarry Smith Level: intermediate 780d91e6319SBarry Smith 7812ef1f0ffSBarry Smith Fortran Note: 7822ef1f0ffSBarry Smith Information is stored as a double-precision array of dimension `MAT_INFO_SIZE` 7832ef1f0ffSBarry Smith 7841cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetInfo()`, `MatInfoType` 785d91e6319SBarry Smith S*/ 7864e220ebcSLois Curfman McInnes typedef struct { 787b0a32e0cSBarry Smith PetscLogDouble block_size; /* block size */ 788b0a32e0cSBarry Smith PetscLogDouble nz_allocated, nz_used, nz_unneeded; /* number of nonzeros */ 789b0a32e0cSBarry Smith PetscLogDouble memory; /* memory allocated */ 790b0a32e0cSBarry Smith PetscLogDouble assemblies; /* number of matrix assemblies called */ 791b0a32e0cSBarry Smith PetscLogDouble mallocs; /* number of mallocs during MatSetValues() */ 792b0a32e0cSBarry Smith PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */ 793b0a32e0cSBarry Smith PetscLogDouble factor_mallocs; /* number of mallocs during factorization */ 7944e220ebcSLois Curfman McInnes } MatInfo; 7954e220ebcSLois Curfman McInnes 796d9274352SBarry Smith /*E 797d9274352SBarry Smith MatInfoType - Indicates if you want information about the local part of the matrix, 798d9274352SBarry Smith the entire parallel matrix or the maximum over all the local parts. 799d9274352SBarry Smith 8002ef1f0ffSBarry Smith Values: 8012ef1f0ffSBarry Smith + `MAT_LOCAL` - values for each MPI process part of the matrix 8022ef1f0ffSBarry Smith . `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes 8032ef1f0ffSBarry Smith - `MAT_GLOBAL_SUM` - sum of each value over all MPI processes 804d9274352SBarry Smith 80516a05f60SBarry Smith Level: beginner 80616a05f60SBarry Smith 8071cc06b55SBarry Smith .seealso: [](ch_matrices), `MatGetInfo()`, `MatInfo` 808d9274352SBarry Smith E*/ 8099371c9d4SSatish Balay typedef enum { 8109371c9d4SSatish Balay MAT_LOCAL = 1, 8119371c9d4SSatish Balay MAT_GLOBAL_MAX = 2, 8129371c9d4SSatish Balay MAT_GLOBAL_SUM = 3 8139371c9d4SSatish Balay } MatInfoType; 814014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *); 815014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec); 816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]); 817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]); 818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]); 819eede4a3fSMark Adams PETSC_EXTERN PetscErrorCode MatGetRowSumAbs(Mat, Vec); 820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]); 821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec); 822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *); 8237fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *); 8247fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat); 825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *); 826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *); 827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec); 828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode); 829a52676ecSHong Zhang 830014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *); 831014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *); 832014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *); 833014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 834014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 835e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 836e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 837a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 838a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 839cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 8404222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 841447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 84286919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *); 8437b80b807SBarry Smith 844014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *); 845014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *); 846857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *); 847857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *); 848857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *); 849857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *); 850857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *); 851857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *); 852857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *); 853014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat); 8541b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat); 855014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 856014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec); 857014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 858014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 859014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 860014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec); 8617b80b807SBarry Smith 862014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *); 863014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *); 864014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *); 865014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **); 866014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *); 867014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **); 868566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *); 8695ef9f2a5SBarry Smith 8707dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 871edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrices()", ) static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 872d71ae5a4SJacob Faibussowitsch { 8739371c9d4SSatish Balay return MatCreateSubMatrices(mat, n, irow, icol, scall, submat); 8749371c9d4SSatish Balay } 8757dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 876edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatricesMPI()", ) static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 877d71ae5a4SJacob Faibussowitsch { 8789371c9d4SSatish Balay return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat); 8799371c9d4SSatish Balay } 880014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]); 881df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]); 8827dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *); 883edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrix()", ) static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat) 884d71ae5a4SJacob Faibussowitsch { 8859371c9d4SSatish Balay return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat); 8869371c9d4SSatish Balay } 887014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *); 888014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *); 889014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *); 890014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *); 8917b80b807SBarry Smith 892014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *); 893014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *); 894014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat); 895014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *); 8968a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *); 897014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *); 898ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *); 899f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *); 900014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *); 901014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]); 9028efafbd8SBarry Smith 903014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt); 904aa1e27eaSFande Kong PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov); 905d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool); 9067b80b807SBarry Smith 907014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 90822440eb1SKris Buschelman 9097bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 9102df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 9117bab7c10SHong Zhang 912014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *); 913014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *); 91422440eb1SKris Buschelman 915014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 916014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *); 917bc011b1eSHong Zhang 918014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure); 919014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure); 9201c741599SHong Zhang 921014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar); 922014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar); 9237b80b807SBarry Smith 924014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping); 925014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 926a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *); 92781fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout); 928014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 929014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 930014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 931014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 932e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 933014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 934014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 935052efed2SBarry Smith 936014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt); 937014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *); 93890f02eecSBarry Smith 939014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec); 940014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec); 941014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec); 94230b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *); 94330b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *); 94430b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *); 9452a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *); 946edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 6, 0, "MatCreateVecs()", ) static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y) 947d71ae5a4SJacob Faibussowitsch { 9489371c9d4SSatish Balay return MatCreateVecs(mat, x, y); 9499371c9d4SSatish Balay } 95053cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *); 951014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *); 952014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *); 9533a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *); 9549c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *); 955bd481603SBarry Smith 956c8d6c325SJunchao Zhang /*@C 9571620fd73SBarry Smith MatSetValue - Set a single entry into a matrix. 9581620fd73SBarry Smith 959e1c5b2e2SJose E. Roman Not Collective 960a9834a7dSSatish Balay 9611620fd73SBarry Smith Input Parameters: 962c8d6c325SJunchao Zhang + mat - the matrix 96316a05f60SBarry Smith . i - the row location of the entry 96416a05f60SBarry Smith . j - the column location of the entry 96516a05f60SBarry Smith . va - the value to insert 96687497f52SBarry Smith - mode - either `INSERT_VALUES` or `ADD_VALUES` 9671620fd73SBarry Smith 9681620fd73SBarry Smith Level: beginner 9691620fd73SBarry Smith 97095bd0b28SBarry Smith Notes: 97195bd0b28SBarry Smith This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()` 97295bd0b28SBarry Smith MUST be called after all calls to `MatSetValue()` have been completed. 97395bd0b28SBarry Smith 9742ef1f0ffSBarry Smith For efficiency one should use `MatSetValues()` and set several values simultaneously. 9752ef1f0ffSBarry Smith 976b43fc34aSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `InsertMode`, `MatGetValue()`, `MatSetValues()`, 9772ef1f0ffSBarry Smith `MatSetValueLocal()`, `MatSetValuesLocal()` 978c8d6c325SJunchao Zhang @*/ 979c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValue(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 980d71ae5a4SJacob Faibussowitsch { 981c8d6c325SJunchao Zhang return MatSetValues(mat, 1, &i, 1, &j, &va, mode); 9829371c9d4SSatish Balay } 9831620fd73SBarry Smith 984e5e5a7b5SPatrick Sanan /*@C 985e5e5a7b5SPatrick Sanan MatGetValue - Gets a single value from a matrix 9861620fd73SBarry Smith 987e5e5a7b5SPatrick Sanan Not Collective; can only return a value owned by the given process 988e5e5a7b5SPatrick Sanan 989e5e5a7b5SPatrick Sanan Input Parameters: 990e5e5a7b5SPatrick Sanan + mat - the matrix 991e5e5a7b5SPatrick Sanan . row - the row location of the entry 992e5e5a7b5SPatrick Sanan - col - the column location of the entry 993e5e5a7b5SPatrick Sanan 994e5e5a7b5SPatrick Sanan Output Parameter: 995e5e5a7b5SPatrick Sanan . va - the value 996e5e5a7b5SPatrick Sanan 9972ef1f0ffSBarry Smith Level: advanced 9982ef1f0ffSBarry Smith 999e5e5a7b5SPatrick Sanan Notes: 1000b43fc34aSPierre Jolivet The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd()` before this call 10012ef1f0ffSBarry Smith 100287497f52SBarry Smith For efficiency one should use `MatGetValues()` and get several values simultaneously. 1003e5e5a7b5SPatrick Sanan 100487497f52SBarry Smith See notes for `MatGetValues()`. 1005e5e5a7b5SPatrick Sanan 1006b43fc34aSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()` 1007e5e5a7b5SPatrick Sanan @*/ 1008d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va) 1009d71ae5a4SJacob Faibussowitsch { 10109371c9d4SSatish Balay return MatGetValues(mat, 1, &row, 1, &col, va); 10119371c9d4SSatish Balay } 1012e5e5a7b5SPatrick Sanan 1013c8d6c325SJunchao Zhang /*@C 10142ef1f0ffSBarry Smith MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes. 1015e5e5a7b5SPatrick Sanan 1016e5e5a7b5SPatrick Sanan Not Collective 1017e5e5a7b5SPatrick Sanan 1018e5e5a7b5SPatrick Sanan Input Parameters: 1019c8d6c325SJunchao Zhang + mat - the matrix 102016a05f60SBarry Smith . i - the row location of the entry 102116a05f60SBarry Smith . j - the column location of the entry 102216a05f60SBarry Smith . va - the value to insert 102387497f52SBarry Smith - mode - either `INSERT_VALUES` or `ADD_VALUES` 1024e5e5a7b5SPatrick Sanan 10252ef1f0ffSBarry Smith Level: intermediate 10262ef1f0ffSBarry Smith 1027e5e5a7b5SPatrick Sanan Notes: 102887497f52SBarry Smith For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously. 1029e5e5a7b5SPatrick Sanan 103087497f52SBarry Smith See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used. 1031e5e5a7b5SPatrick Sanan 10321cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSetValue()`, `MatSetValuesLocal()` 1033c8d6c325SJunchao Zhang @*/ 1034c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValueLocal(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 1035d71ae5a4SJacob Faibussowitsch { 1036c8d6c325SJunchao Zhang return MatSetValuesLocal(mat, 1, &i, 1, &j, &va, mode); 10379371c9d4SSatish Balay } 10381620fd73SBarry Smith 10391620fd73SBarry Smith /*MC 1040d0609cedSBarry Smith MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per 1041bd481603SBarry Smith row in a matrix providing the data that one can use to correctly preallocate the matrix. 1042bd481603SBarry Smith 1043bd481603SBarry Smith Synopsis: 1044aaa7dc30SBarry Smith #include <petscmat.h> 1045d0609cedSBarry Smith PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz) 1046bd481603SBarry Smith 1047d083f849SBarry Smith Collective 1048bd481603SBarry Smith 1049bd481603SBarry Smith Input Parameters: 1050bd481603SBarry Smith + comm - the communicator that will share the eventually allocated matrix 1051859fcb39SBarry Smith . nrows - the number of LOCAL rows in the matrix 1052859fcb39SBarry Smith - ncols - the number of LOCAL columns in the matrix 1053bd481603SBarry Smith 1054bd481603SBarry Smith Output Parameters: 1055bd481603SBarry Smith + dnz - the array that will be passed to the matrix preallocation routines 1056a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1057bd481603SBarry Smith 10582ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1059bd481603SBarry Smith 1060bd481603SBarry Smith Notes: 10612ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 10622ef1f0ffSBarry Smith the use of this routine 10632ef1f0ffSBarry Smith 1064d0609cedSBarry Smith This is a macro that handles its own error checking, it does not return an error code. 1065d0609cedSBarry Smith 10662ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1067bd481603SBarry Smith 10682ef1f0ffSBarry Smith Developer Note: 1069af27ebaaSBarry Smith This is a MACRO, not a function, because it has a leading { that is closed by `PetscPreallocateFinalize()`. 1070bd481603SBarry Smith 10711cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1072db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 1073bd481603SBarry Smith M*/ 10749371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \ 10759371c9d4SSatish Balay do { \ 10763ba16761SJacob Faibussowitsch PetscInt __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \ 10773ba16761SJacob Faibussowitsch PetscInt PETSC_UNUSED __start; \ 10789566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \ 10799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \ 10809371c9d4SSatish Balay __start = __end - __ncols; \ 10819371c9d4SSatish Balay (void)__start; \ 10829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \ 10835f80ce2aSJacob Faibussowitsch __rstart -= __nrows 10847c922b88SBarry Smith 1085edd03b47SJacob Faibussowitsch #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateBegin()", ) MatPreallocateBegin(__VA_ARGS__) 1086d0609cedSBarry Smith 1087bd481603SBarry Smith /*MC 1088bd481603SBarry Smith MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1089bd481603SBarry Smith inserted using a local number of the rows and columns 1090bd481603SBarry Smith 1091bd481603SBarry Smith Synopsis: 1092aaa7dc30SBarry Smith #include <petscmat.h> 1093c1ac3661SBarry Smith PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1094bd481603SBarry Smith 1095bd481603SBarry Smith Not Collective 1096bd481603SBarry Smith 1097bd481603SBarry Smith Input Parameters: 1098784ac674SJed Brown + map - the row mapping from local numbering to global numbering 1099bd481603SBarry Smith . nrows - the number of rows indicated 11001d73ed98SBarry Smith . rows - the indices of the rows 1101784ac674SJed Brown . cmap - the column mapping from local to global numbering 1102bd481603SBarry Smith . ncols - the number of columns in the matrix 1103bd481603SBarry Smith . cols - the columns indicated 1104bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1105a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1106bd481603SBarry Smith 11072ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1108bd481603SBarry Smith 1109bd481603SBarry Smith Notes: 11102ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11112ef1f0ffSBarry Smith the use of this routine 1112bd481603SBarry Smith 11132ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1114bd481603SBarry Smith 11151cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1116db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()` 1117bd481603SBarry Smith M*/ 111894bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 11199371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1120c4f061fbSSatish Balay 1121bd481603SBarry Smith /*MC 1122c1154cd5SBarry Smith MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1123c1154cd5SBarry Smith inserted using a local number of the rows and columns. This version removes any duplicate columns in cols 1124c1154cd5SBarry Smith 1125c1154cd5SBarry Smith Synopsis: 1126c1154cd5SBarry Smith #include <petscmat.h> 1127c1154cd5SBarry Smith PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1128c1154cd5SBarry Smith 1129c1154cd5SBarry Smith Not Collective 1130c1154cd5SBarry Smith 1131c1154cd5SBarry Smith Input Parameters: 1132c1154cd5SBarry Smith + map - the row mapping from local numbering to global numbering 1133c1154cd5SBarry Smith . nrows - the number of rows indicated 1134c1154cd5SBarry Smith . rows - the indices of the rows (these values are mapped to the global values) 1135c1154cd5SBarry Smith . cmap - the column mapping from local to global numbering 1136c1154cd5SBarry Smith . ncols - the number of columns in the matrix (this value will be changed if duplicate columns are found) 1137c1154cd5SBarry Smith . cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed) 1138c1154cd5SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1139a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1140c1154cd5SBarry Smith 11412ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1142c1154cd5SBarry Smith 1143c1154cd5SBarry Smith Notes: 11442ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11452ef1f0ffSBarry Smith the use of this routine 1146c1154cd5SBarry Smith 11472ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1148c1154cd5SBarry Smith 11491cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1150db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1151c1154cd5SBarry Smith M*/ 115294bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 11539371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1154c1154cd5SBarry Smith 1155c1154cd5SBarry Smith /*MC 1156d6e23781SBarry Smith MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1157bd481603SBarry Smith inserted using a local number of the rows and columns 1158bd481603SBarry Smith 1159bd481603SBarry Smith Synopsis: 1160aaa7dc30SBarry Smith #include <petscmat.h> 1161d6e23781SBarry Smith PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1162d6e23781SBarry Smith 1163d6e23781SBarry Smith Not Collective 1164d6e23781SBarry Smith 1165d6e23781SBarry Smith Input Parameters: 1166d6e23781SBarry Smith + map - the row mapping from local numbering to global numbering 1167d6e23781SBarry Smith . nrows - the number of rows indicated 1168d6e23781SBarry Smith . rows - the indices of the rows 1169d6e23781SBarry Smith . cmap - the column mapping from local to global numbering 1170d6e23781SBarry Smith . ncols - the number of columns in the matrix 1171d6e23781SBarry Smith . cols - the columns indicated 1172d6e23781SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1173a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1174d6e23781SBarry Smith 11752ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1176d6e23781SBarry Smith 1177d6e23781SBarry Smith Notes: 11782ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 11792ef1f0ffSBarry Smith the use of this routine 1180d6e23781SBarry Smith 11812ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1182d6e23781SBarry Smith 11831cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1184db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()` 1185d6e23781SBarry Smith M*/ 118694bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 11879371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1188d6e23781SBarry Smith 1189d6e23781SBarry Smith /*MC 1190d6e23781SBarry Smith MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1191d6e23781SBarry Smith inserted using a local number of the rows and columns 1192d6e23781SBarry Smith 1193d6e23781SBarry Smith Synopsis: 1194d6e23781SBarry Smith #include <petscmat.h> 1195d6e23781SBarry Smith PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1196bd481603SBarry Smith 1197bd481603SBarry Smith Not Collective 1198bd481603SBarry Smith 1199bd481603SBarry Smith Input Parameters: 1200bd481603SBarry Smith + map - the mapping between local numbering and global numbering 1201bd481603SBarry Smith . nrows - the number of rows indicated 12021d73ed98SBarry Smith . rows - the indices of the rows 1203bd481603SBarry Smith . ncols - the number of columns in the matrix 1204bd481603SBarry Smith . cols - the columns indicated 1205bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1206a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1207bd481603SBarry Smith 12082ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1209bd481603SBarry Smith 1210bd481603SBarry Smith Notes: 12112ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12122ef1f0ffSBarry Smith the use of this routine 1213bd481603SBarry Smith 12142ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1215bd481603SBarry Smith 12161cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()` 1217db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1218bd481603SBarry Smith M*/ 121994bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \ 12209371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));) 1221e83a5d19SLisandro Dalcin 1222bd481603SBarry Smith /*MC 1223bd481603SBarry Smith MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1224bd481603SBarry Smith inserted using a local number of the rows and columns 1225bd481603SBarry Smith 1226bd481603SBarry Smith Synopsis: 1227aaa7dc30SBarry Smith #include <petscmat.h> 1228c1ac3661SBarry Smith PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1229bd481603SBarry Smith 1230bd481603SBarry Smith Not Collective 1231bd481603SBarry Smith 1232bd481603SBarry Smith Input Parameters: 123364075487SBarry Smith + row - the row 1234bd481603SBarry Smith . ncols - the number of columns in the matrix 1235a50f8bf6SHong Zhang - cols - the columns indicated 1236a50f8bf6SHong Zhang 1237a50f8bf6SHong Zhang Output Parameters: 1238a50f8bf6SHong Zhang + dnz - the array that will be passed to the matrix preallocation routines 1239a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1240bd481603SBarry Smith 12412ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1242bd481603SBarry Smith 1243bd481603SBarry Smith Notes: 12442ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12452ef1f0ffSBarry Smith the use of this routine 1246bd481603SBarry Smith 12472ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1248bd481603SBarry Smith 1249af27ebaaSBarry Smith This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin(). 12501620fd73SBarry Smith 12511cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1252db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1253bd481603SBarry Smith M*/ 12549371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \ 12559371c9d4SSatish Balay PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \ 125664075487SBarry Smith if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \ 1257a6042fd4SStefano Zampini else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 12589371c9d4SSatish Balay }) 12597c922b88SBarry Smith 1260bd481603SBarry Smith /*MC 1261d6e23781SBarry Smith MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1262bd481603SBarry Smith inserted using a local number of the rows and columns 1263bd481603SBarry Smith 1264bd481603SBarry Smith Synopsis: 1265aaa7dc30SBarry Smith #include <petscmat.h> 1266d6e23781SBarry Smith PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1267bd481603SBarry Smith 1268bd481603SBarry Smith Not Collective 1269bd481603SBarry Smith 1270bd481603SBarry Smith Input Parameters: 1271bd481603SBarry Smith + nrows - the number of rows indicated 12721d73ed98SBarry Smith . rows - the indices of the rows 1273bd481603SBarry Smith . ncols - the number of columns in the matrix 1274bd481603SBarry Smith . cols - the columns indicated 1275bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1276a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1277bd481603SBarry Smith 12782ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1279bd481603SBarry Smith 1280bd481603SBarry Smith Notes: 12812ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 12822ef1f0ffSBarry Smith the use of this routine 1283bd481603SBarry Smith 12842ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1285bd481603SBarry Smith 1286af27ebaaSBarry Smith This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin(). 12871620fd73SBarry Smith 12881cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`, 1289db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1290bd481603SBarry Smith M*/ 129194bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \ 12929371c9d4SSatish Balay PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \ 1293d3d32019SBarry Smith if (cols[__i] >= __end) onz[row - __rstart]++; \ 1294a6042fd4SStefano Zampini else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 12959371c9d4SSatish Balay }) 1296d3d32019SBarry Smith 1297bd481603SBarry Smith /*MC 1298a6042fd4SStefano Zampini MatPreallocateLocation - An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists 129916371a99SBarry Smith 130016371a99SBarry Smith Synopsis: 1301aaa7dc30SBarry Smith #include <petscmat.h> 130216371a99SBarry Smith PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz) 130316371a99SBarry Smith 130416371a99SBarry Smith Not Collective 130516371a99SBarry Smith 130616371a99SBarry Smith Input Parameters: 1307a2b725a8SWilliam Gropp + A - matrix 130816371a99SBarry Smith . row - row where values exist (must be local to this process) 130916371a99SBarry Smith . ncols - number of columns 131016371a99SBarry Smith . cols - columns with nonzeros 131116371a99SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1312a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 131316371a99SBarry Smith 13142ef1f0ffSBarry Smith Level: deprecated (since v3.19) 131516371a99SBarry Smith 131616371a99SBarry Smith Notes: 13172ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 13182ef1f0ffSBarry Smith the use of this routine 131916371a99SBarry Smith 13202ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz` that is handled internally by these routines 132116371a99SBarry Smith 1322af27ebaaSBarry Smith Developer Note: 1323af27ebaaSBarry Smith This is a MACRO, not a function, because it uses a bunch of variables private to the MatPreallocation.... routines. 132416371a99SBarry Smith 13251cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1326db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 132716371a99SBarry Smith M*/ 1328d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz)) 132916371a99SBarry Smith 133016371a99SBarry Smith /*MC 1331d0609cedSBarry Smith MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per 1332bd481603SBarry Smith row in a matrix providing the data that one can use to correctly preallocate the matrix. 1333bd481603SBarry Smith 1334bd481603SBarry Smith Synopsis: 1335aaa7dc30SBarry Smith #include <petscmat.h> 1336d0609cedSBarry Smith PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz) 1337bd481603SBarry Smith 1338d083f849SBarry Smith Collective 1339bd481603SBarry Smith 1340bd481603SBarry Smith Input Parameters: 134116371a99SBarry Smith + dnz - the array that was be passed to the matrix preallocation routines 1342a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1343bd481603SBarry Smith 13442ef1f0ffSBarry Smith Level: deprecated (since v3.19) 1345bd481603SBarry Smith 1346bd481603SBarry Smith Notes: 13472ef1f0ffSBarry Smith This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 13482ef1f0ffSBarry Smith the use of this routine 1349d0609cedSBarry Smith 13502ef1f0ffSBarry Smith Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1351bd481603SBarry Smith 13522ef1f0ffSBarry Smith Developer Note: 1353af27ebaaSBarry Smith This is a MACRO, not a function, because it closes the { started in MatPreallocateBegin(). 13541620fd73SBarry Smith 13551cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1356db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 1357bd481603SBarry Smith M*/ 13589371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \ 13599371c9d4SSatish Balay PetscCall(PetscFree2(dnz, onz)); \ 13609371c9d4SSatish Balay } \ 13619371c9d4SSatish Balay while (0) 1362d0609cedSBarry Smith 1363edd03b47SJacob Faibussowitsch #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateEnd()", ) MatPreallocateEnd(__VA_ARGS__) 13647c922b88SBarry Smith 13657b80b807SBarry Smith /* Routines unique to particular data structures */ 1366014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *); 1367698d4c6aSKris Buschelman 1368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *); 1369014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *); 1370698d4c6aSKris Buschelman 1371014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]); 1372014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]); 1373014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1374014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1375014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1376014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool); 13777b80b807SBarry Smith 1378a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4 1379a96a251dSBarry Smith 1380014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1381014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1382014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]); 138319b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt); 1384273d9f13SBarry Smith 1385014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1386014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1387014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1388014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1389014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1390014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1391014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1392014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]); 1393b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *); 1394252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *); 1395014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]); 1396014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]); 13979230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 13989230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 1399014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *); 1400273d9f13SBarry Smith 140149a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *); 1402ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt); 1403edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatDenseSetLDA()", ) static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda) 1404d71ae5a4SJacob Faibussowitsch { 14059371c9d4SSatish Balay return MatDenseSetLDA(A, lda); 14069371c9d4SSatish Balay } 1407014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *); 14081b807ce4Svictorle 1409621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1410621e819fSSatish Balay 1411014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat); 1412014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat); 14132e8a6d31SBarry Smith 1414014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *); 14157cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *); 14167b80b807SBarry Smith /* 14177b80b807SBarry Smith These routines are not usually accessed directly, rather solving is 141894b7f48cSBarry Smith done through the KSP and PC interfaces. 14197b80b807SBarry Smith */ 14207b80b807SBarry Smith 142176bdecfbSBarry Smith /*J 14222ef1f0ffSBarry Smith MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used 14232ef1f0ffSBarry Smith to reduce fill in sparse factorizations. 1424d9274352SBarry Smith 1425d9274352SBarry Smith Level: beginner 1426d9274352SBarry Smith 14272c7c0729SBarry Smith Notes: 142816a05f60SBarry Smith If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one 142916a05f60SBarry Smith of its own. 14302c7c0729SBarry Smith 14312ef1f0ffSBarry Smith There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()` 14322ef1f0ffSBarry Smith 14332ef1f0ffSBarry Smith Developer Note: 14342ef1f0ffSBarry Smith This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning` 14352ef1f0ffSBarry Smith 14361cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`, 14372ef1f0ffSBarry Smith `PCFactorSetOrderingType()` 143876bdecfbSBarry Smith J*/ 143919fd82e9SBarry Smith typedef const char *MatOrderingType; 14402692d6eeSBarry Smith #define MATORDERINGNATURAL "natural" 14412692d6eeSBarry Smith #define MATORDERINGND "nd" 14422692d6eeSBarry Smith #define MATORDERING1WD "1wd" 14432692d6eeSBarry Smith #define MATORDERINGRCM "rcm" 14442692d6eeSBarry Smith #define MATORDERINGQMD "qmd" 14452692d6eeSBarry Smith #define MATORDERINGROWLENGTH "rowlength" 1446510184a7SJed Brown #define MATORDERINGWBM "wbm" 1447fc1bef75SJed Brown #define MATORDERINGSPECTRAL "spectral" 1448312e372aSBarry Smith #define MATORDERINGAMD "amd" /* only works if UMFPACK is installed with PETSc */ 1449048412efSPablo Brubeck #define MATORDERINGMETISND "metisnd" /* only works if METIS is installed with PETSc */ 14509bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */ 14512c7c0729SBarry Smith #define MATORDERINGEXTERNAL "external" /* uses an ordering type internal to the factorization package */ 1452b12f92e5SBarry Smith 145319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrdering(Mat, MatOrderingType, IS *, IS *); 1454140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrderingList(PetscFunctionList *); 1455bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *)); 1456140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList; 1457d4fbbf0eSBarry Smith 1458013e2dc7SBarry Smith #include "petscmatcoarsen.h" 1459013e2dc7SBarry Smith 1460014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS); 1461fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *); 1462a2ce50c7SBarry Smith 14634ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *); 14644ac6704cSBarry Smith 1465d91e6319SBarry Smith /*S 14662ef1f0ffSBarry Smith MatFactorShiftType - Type of numeric shift used for factorizations 1467d90ac83dSHong Zhang 14682ef1f0ffSBarry Smith Values: 14692ef1f0ffSBarry Smith + `MAT_SHIFT_NONE` - do not shift the matrix diagonal entries 14702ef1f0ffSBarry Smith . `MAT_SHIFT_NONZERO` - shift the entries to be non-zero 14712ef1f0ffSBarry Smith . `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite 14722ef1f0ffSBarry Smith - `MAT_SHIFT_INBLOCKS` - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ` 1473d90ac83dSHong Zhang 14742ef1f0ffSBarry Smith Level: intermediate 14752ef1f0ffSBarry Smith 14761cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()` 1477d90ac83dSHong Zhang S*/ 14789371c9d4SSatish Balay typedef enum { 14799371c9d4SSatish Balay MAT_SHIFT_NONE, 14809371c9d4SSatish Balay MAT_SHIFT_NONZERO, 14819371c9d4SSatish Balay MAT_SHIFT_POSITIVE_DEFINITE, 14829371c9d4SSatish Balay MAT_SHIFT_INBLOCKS 14839371c9d4SSatish Balay } MatFactorShiftType; 14846a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[]; 14855e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[]; 1486d90ac83dSHong Zhang 1487d90ac83dSHong Zhang /*S 1488ec5066bdSBarry Smith MatFactorError - indicates what type of error was generated in a matrix factorization 14899aa7eafdSHong Zhang 14902ef1f0ffSBarry Smith Values: 14912ef1f0ffSBarry Smith + `MAT_FACTOR_NOERROR` - there was no error during the factorization 14922ef1f0ffSBarry Smith . `MAT_FACTOR_STRUCT_ZEROPIVOT` - there was a missing entry in a diagonal location of the matrix 14932ef1f0ffSBarry Smith . `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization 14942ef1f0ffSBarry Smith . `MAT_FACTOR_OUTMEMORY` - the factorization has run out of memory 14952ef1f0ffSBarry Smith - `MAT_FACTOR_OTHER` - some other error has occurred. 14969aa7eafdSHong Zhang 14972ef1f0ffSBarry Smith Level: intermediate 149800e125f8SBarry Smith 14992ef1f0ffSBarry Smith Note: 15002ef1f0ffSBarry Smith When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason` 15012ef1f0ffSBarry Smith 15021cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`, 15032ef1f0ffSBarry Smith `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason` 15049aa7eafdSHong Zhang S*/ 15059371c9d4SSatish Balay typedef enum { 15069371c9d4SSatish Balay MAT_FACTOR_NOERROR, 15079371c9d4SSatish Balay MAT_FACTOR_STRUCT_ZEROPIVOT, 15089371c9d4SSatish Balay MAT_FACTOR_NUMERIC_ZEROPIVOT, 15099371c9d4SSatish Balay MAT_FACTOR_OUTMEMORY, 15109371c9d4SSatish Balay MAT_FACTOR_OTHER 15119371c9d4SSatish Balay } MatFactorError; 15129aa7eafdSHong Zhang 151300e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *); 1514b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat); 15157b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *); 151600e125f8SBarry Smith 15179aa7eafdSHong Zhang /*S 1518422a814eSBarry Smith MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization 1519b00f7748SHong Zhang 1520b00f7748SHong Zhang Level: developer 1521b00f7748SHong Zhang 15222ef1f0ffSBarry Smith Note: 15232ef1f0ffSBarry Smith You can use `MatFactorInfoInitialize()` to set default values. 1524b00f7748SHong Zhang 15252ef1f0ffSBarry Smith Fortran Note: 15262ef1f0ffSBarry Smith The data is available in a double precision arrays of size `MAT_FACTORINFO_SIZE` 15272ef1f0ffSBarry Smith 15281cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, 15292ef1f0ffSBarry Smith `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()` 1530b00f7748SHong Zhang S*/ 1531b00f7748SHong Zhang typedef struct { 153215e8a5b3SHong Zhang PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */ 153385317021SBarry Smith PetscReal usedt; 153415e8a5b3SHong Zhang PetscReal dt; /* drop tolerance */ 1535b00f7748SHong Zhang PetscReal dtcol; /* tolerance for pivoting */ 153615e8a5b3SHong Zhang PetscReal dtcount; /* maximum nonzeros to be allowed per row */ 153767e28bfeSBarry Smith PetscReal fill; /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */ 1538348344bbSBarry Smith PetscReal levels; /* ICC/ILU(levels) */ 1539bcd9e38bSBarry Smith PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 1540bcd9e38bSBarry Smith factorization may be faster if do not pivot */ 154115e8a5b3SHong Zhang PetscReal zeropivot; /* pivot is called zero if less than this */ 1542f4db908eSBarry Smith PetscReal shifttype; /* type of shift added to matrix factor to prevent zero pivots */ 1543f4db908eSBarry Smith PetscReal shiftamount; /* how large the shift is */ 154415e8a5b3SHong Zhang } MatFactorInfo; 1545ffa6d0a5SLois Curfman McInnes 1546014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *); 15479a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *); 15489a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15499a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *); 15509a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *); 15519a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *); 15529a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 15539a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 15549a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15559a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *); 15569a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *); 15573f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *); 15583f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 15593f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *); 1560014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *); 1561014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec); 1562014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec); 1563014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec); 1564014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec); 1565014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec); 1566014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec); 1567014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs); 15687c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat); 15697c2f51b8SStefano Zampini 15709371c9d4SSatish Balay typedef enum { 15719371c9d4SSatish Balay MAT_FACTOR_SCHUR_UNFACTORED, 15729371c9d4SSatish Balay MAT_FACTOR_SCHUR_FACTORED, 15739371c9d4SSatish Balay MAT_FACTOR_SCHUR_INVERTED 15749371c9d4SSatish Balay } MatFactorSchurStatus; 15758e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS); 15767c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 15777c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus); 15785a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat); 15797c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 15805a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec); 15815a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec); 15826dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat); 1583bb5a7306SBarry Smith 15848a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat); 1585d91e6319SBarry Smith /*E 1586d91e6319SBarry Smith MatSORType - What type of (S)SOR to perform 1587bb1eb677SSatish Balay 15882ef1f0ffSBarry Smith Values: 15892ef1f0ffSBarry Smith + `SOR_FORWARD_SWEEP` - do a sweep from the first row of the matrix to the last 15902ef1f0ffSBarry Smith . `SOR_BACKWARD_SWEEP` - do a sweep from the last row to the first 15912ef1f0ffSBarry Smith . `SOR_SYMMETRIC_SWEEP` - do a sweep from the first row to the last and then back to the first 1592af27ebaaSBarry Smith . `SOR_LOCAL_FORWARD_SWEEP` - each MPI process does its own forward sweep with no communication 1593af27ebaaSBarry Smith . `SOR_LOCAL_BACKWARD_SWEEP` - each MPI process does its own backward sweep with no communication 1594af27ebaaSBarry Smith . `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI process does its own symmetric sweep with no communication 15952ef1f0ffSBarry Smith . `SOR_ZERO_INITIAL_GUESS` - indicates the initial solution is zero so the sweep can avoid unneeded computation 15962ef1f0ffSBarry Smith . `SOR_EISENSTAT` - apply the Eisentat application of SOR, see `PCEISENSTAT` 15972ef1f0ffSBarry Smith . `SOR_APPLY_UPPER` - multiply by the upper triangular portion of the matrix 15982ef1f0ffSBarry Smith - `SOR_APPLY_LOWER` - multiply by the lower triangular portion of the matrix 15992ef1f0ffSBarry Smith 1600d91e6319SBarry Smith Level: beginner 1601d91e6319SBarry Smith 16022ef1f0ffSBarry Smith Note: 16032ef1f0ffSBarry Smith These may be bitwise ORd together 1604d9274352SBarry Smith 16052ef1f0ffSBarry Smith Developer Note: 16062ef1f0ffSBarry Smith Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below 1607d91e6319SBarry Smith 16081cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSOR()` 1609d91e6319SBarry Smith E*/ 16109371c9d4SSatish Balay typedef enum { 16119371c9d4SSatish Balay SOR_FORWARD_SWEEP = 1, 16129371c9d4SSatish Balay SOR_BACKWARD_SWEEP = 2, 16139371c9d4SSatish Balay SOR_SYMMETRIC_SWEEP = 3, 16149371c9d4SSatish Balay SOR_LOCAL_FORWARD_SWEEP = 4, 16159371c9d4SSatish Balay SOR_LOCAL_BACKWARD_SWEEP = 8, 16169371c9d4SSatish Balay SOR_LOCAL_SYMMETRIC_SWEEP = 12, 16179371c9d4SSatish Balay SOR_ZERO_INITIAL_GUESS = 16, 16189371c9d4SSatish Balay SOR_EISENSTAT = 32, 16199371c9d4SSatish Balay SOR_APPLY_UPPER = 64, 16209371c9d4SSatish Balay SOR_APPLY_LOWER = 128 16219371c9d4SSatish Balay } MatSORType; 1622014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec); 16238ed539a5SBarry Smith 16247086a01eSPeter Brune /*S 16257086a01eSPeter Brune MatColoring - Object for managing the coloring of matrices. 16267086a01eSPeter Brune 16277086a01eSPeter Brune Level: beginner 16287086a01eSPeter Brune 1629ec5066bdSBarry Smith Notes: 163087497f52SBarry Smith Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 163187497f52SBarry Smith matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors). 1632ec5066bdSBarry Smith 163387497f52SBarry Smith Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This 16342ef1f0ffSBarry Smith same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices. 1635ec5066bdSBarry Smith 16361cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`, 16372ef1f0ffSBarry Smith `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`, 16382ef1f0ffSBarry Smith `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen` 16397086a01eSPeter Brune S*/ 1640d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring; 1641d4db15c4SBarry Smith 1642d4db15c4SBarry Smith /*J 1643d4db15c4SBarry Smith MatColoringType - String with the name of a PETSc matrix coloring 1644d9274352SBarry Smith 1645d9274352SBarry Smith Level: beginner 1646d9274352SBarry Smith 16471cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring` 164876bdecfbSBarry Smith J*/ 164919fd82e9SBarry Smith typedef const char *MatColoringType; 16505567d71aSPeter Brune #define MATCOLORINGJP "jp" 1651b9acb617SPeter Brune #define MATCOLORINGPOWER "power" 16522692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural" 16532692d6eeSBarry Smith #define MATCOLORINGSL "sl" 16542692d6eeSBarry Smith #define MATCOLORINGLF "lf" 16552692d6eeSBarry Smith #define MATCOLORINGID "id" 16568121bdceSPeter Brune #define MATCOLORINGGREEDY "greedy" 1657b12f92e5SBarry Smith 16588ac6da0aSPeter Brune /*E 16592ef1f0ffSBarry Smith MatColoringWeightType - Type of weight scheme used for the coloring algorithm 16608ac6da0aSPeter Brune 16612ef1f0ffSBarry Smith Values: 166287497f52SBarry Smith + `MAT_COLORING_RANDOM` - Random weights 166387497f52SBarry Smith . `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering. 166487497f52SBarry Smith - `MAT_COLORING_LF` - Last-first weighting. 16658ac6da0aSPeter Brune 16668ac6da0aSPeter Brune Level: intermediate 16678ac6da0aSPeter Brune 16681cc06b55SBarry Smith .seealso: [](ch_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()` 16698ac6da0aSPeter Brune E*/ 16709371c9d4SSatish Balay typedef enum { 16719371c9d4SSatish Balay MAT_COLORING_WEIGHT_RANDOM, 16729371c9d4SSatish Balay MAT_COLORING_WEIGHT_LEXICAL, 16739371c9d4SSatish Balay MAT_COLORING_WEIGHT_LF, 16749371c9d4SSatish Balay MAT_COLORING_WEIGHT_SL 16759371c9d4SSatish Balay } MatColoringWeightType; 16768ac6da0aSPeter Brune 1677335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *); 1678d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *); 1679335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *); 1680335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer); 1681335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType); 1682335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring); 1683335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt); 1684335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *); 1685335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt); 1686335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *); 1687335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *); 1688335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring)); 1689014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *); 16908ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType); 1691c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *); 16928ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm); 1693bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring); 1694edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatColoringTest()", ) static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring) 1695d71ae5a4SJacob Faibussowitsch { 16969371c9d4SSatish Balay return MatColoringTest(matcoloring, iscoloring); 16979371c9d4SSatish Balay } 1698bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring); 1699639f9d9dSBarry Smith 1700d9274352SBarry Smith /*S 170187497f52SBarry Smith MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring 1702639f9d9dSBarry Smith 1703d9274352SBarry Smith Level: beginner 1704d9274352SBarry Smith 1705ec5066bdSBarry Smith Notes: 170687497f52SBarry Smith This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()` 1707ec5066bdSBarry Smith 17082ef1f0ffSBarry Smith The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object 17092ef1f0ffSBarry Smith 17101cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()` 1711d9274352SBarry Smith S*/ 1712e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring; 1713639f9d9dSBarry Smith 1714014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *); 1715014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *); 1716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer); 1717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *); 1718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **); 1719014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal); 1720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring); 1721d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *); 1722014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec); 1723edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]); 1724f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring); 1725f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt); 1726bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *); 1727b1683b59SHong Zhang 1728b1683b59SHong Zhang /*S 1729af27ebaaSBarry Smith MatTransposeColoring - Object for computing a sparse matrix product $C = A*B^T$ via coloring 1730b1683b59SHong Zhang 17312ef1f0ffSBarry Smith Level: developer 1732b1683b59SHong Zhang 17331cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()` 1734b1683b59SHong Zhang S*/ 1735b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring; 1736b1683b59SHong Zhang 1737014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *); 1738014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat); 1739014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat); 1740014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *); 1741b1683b59SHong Zhang 1742d9274352SBarry Smith /*S 1743d9274352SBarry Smith MatPartitioning - Object for managing the partitioning of a matrix or graph 1744d9274352SBarry Smith 1745d9274352SBarry Smith Level: beginner 1746d9274352SBarry Smith 174787497f52SBarry Smith Note: 174887497f52SBarry Smith There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations 174987497f52SBarry Smith via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`) 1750ec5066bdSBarry Smith 1751b5e6e808SPierre Jolivet Developer Note: 17522ef1f0ffSBarry Smith It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed 1753ec5066bdSBarry Smith 17541cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`, 17552ef1f0ffSBarry Smith `MatCoarsenType`, `MatCoarsenType` 1756d9274352SBarry Smith S*/ 175791e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning; 1758d9274352SBarry Smith 175976bdecfbSBarry Smith /*J 17608f6c3df8SBarry Smith MatPartitioningType - String with the name of a PETSc matrix partitioning 1761d9274352SBarry Smith 1762d9274352SBarry Smith Level: beginner 17630d04baf8SBarry Smith dm 17641cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`, 17652ef1f0ffSBarry Smith `MatCoarsenType`, `MatCoarsenType` 176676bdecfbSBarry Smith J*/ 176719fd82e9SBarry Smith typedef const char *MatPartitioningType; 17682692d6eeSBarry Smith #define MATPARTITIONINGCURRENT "current" 1769aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE "average" 17702692d6eeSBarry Smith #define MATPARTITIONINGSQUARE "square" 17712692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis" 17722692d6eeSBarry Smith #define MATPARTITIONINGCHACO "chaco" 17732692d6eeSBarry Smith #define MATPARTITIONINGPARTY "party" 177450d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch" 177588d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch" 177671306c60Sjroman 1777014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *); 177819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType); 1779014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt); 1780014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat); 1781252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt); 1782014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]); 1783014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]); 1784ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool); 1785ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *); 1786014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *); 1787fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *); 1788668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS); 1789f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *); 1790014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *); 1791bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning)); 1792014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer); 1793fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]); 1794014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning); 179519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *); 1796ca161407SBarry Smith 179727538973SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part); 1798014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning); 1799014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *); 18000752156aSBarry Smith 18019371c9d4SSatish Balay typedef enum { 18029371c9d4SSatish Balay MP_CHACO_MULTILEVEL = 1, 18039371c9d4SSatish Balay MP_CHACO_SPECTRAL = 2, 18049371c9d4SSatish Balay MP_CHACO_LINEAR = 4, 18059371c9d4SSatish Balay MP_CHACO_RANDOM = 5, 18069371c9d4SSatish Balay MP_CHACO_SCATTERED = 6 18079371c9d4SSatish Balay } MPChacoGlobalType; 18086a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[]; 18099371c9d4SSatish Balay typedef enum { 18109371c9d4SSatish Balay MP_CHACO_KERNIGHAN = 1, 18119371c9d4SSatish Balay MP_CHACO_NONE = 2 18129371c9d4SSatish Balay } MPChacoLocalType; 18136a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[]; 18149371c9d4SSatish Balay typedef enum { 18159371c9d4SSatish Balay MP_CHACO_LANCZOS = 0, 18169371c9d4SSatish Balay MP_CHACO_RQI = 1 18179371c9d4SSatish Balay } MPChacoEigenType; 18186a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[]; 1819b6956c12SJose Roman 1820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType); 1821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *); 1822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType); 1823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *); 1824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal); 1825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType); 1826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *); 1827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal); 1828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *); 1829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt); 1830014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *); 183171306c60Sjroman 183271306c60Sjroman #define MP_PARTY_OPT "opt" 183371306c60Sjroman #define MP_PARTY_LIN "lin" 183471306c60Sjroman #define MP_PARTY_SCA "sca" 183571306c60Sjroman #define MP_PARTY_RAN "ran" 183671306c60Sjroman #define MP_PARTY_GBF "gbf" 183771306c60Sjroman #define MP_PARTY_GCF "gcf" 183871306c60Sjroman #define MP_PARTY_BUB "bub" 183971306c60Sjroman #define MP_PARTY_DEF "def" 1840014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *); 184171306c60Sjroman #define MP_PARTY_HELPFUL_SETS "hs" 184271306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl" 184371306c60Sjroman #define MP_PARTY_NONE "no" 1844014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *); 1845014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal); 1846014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool); 1847014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool); 184871306c60Sjroman 18499371c9d4SSatish Balay typedef enum { 18509371c9d4SSatish Balay MP_PTSCOTCH_DEFAULT, 18519371c9d4SSatish Balay MP_PTSCOTCH_QUALITY, 18529371c9d4SSatish Balay MP_PTSCOTCH_SPEED, 18539371c9d4SSatish Balay MP_PTSCOTCH_BALANCE, 18549371c9d4SSatish Balay MP_PTSCOTCH_SAFETY, 18559371c9d4SSatish Balay MP_PTSCOTCH_SCALABILITY 18569371c9d4SSatish Balay } MPPTScotchStrategyType; 18576a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[]; 1858e0f1cffaSJose Roman 1859014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal); 1860014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *); 1861014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType); 1862014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *); 186371306c60Sjroman 1864b43b03e9SMark F. Adams /* 18656294fa2bSFande Kong * hierarchical partitioning 18666294fa2bSFande Kong */ 18674e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *); 18684e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *); 18694e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt); 18704e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt); 18716294fa2bSFande Kong 1872014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *); 1873591294e4SBarry Smith 18740752156aSBarry Smith /* 1875c786d857SStefano Zampini If you add entries here you must also add them to src/mat/f90-mod/petscmat.h 1876c786d857SStefano Zampini If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx 1877d4fbbf0eSBarry Smith */ 18789371c9d4SSatish Balay typedef enum { 18799371c9d4SSatish Balay MATOP_SET_VALUES = 0, 18801c1c02c0SLois Curfman McInnes MATOP_GET_ROW = 1, 18811c1c02c0SLois Curfman McInnes MATOP_RESTORE_ROW = 2, 18821c1c02c0SLois Curfman McInnes MATOP_MULT = 3, 18831c1c02c0SLois Curfman McInnes MATOP_MULT_ADD = 4, 18847c922b88SBarry Smith MATOP_MULT_TRANSPOSE = 5, 18857c922b88SBarry Smith MATOP_MULT_TRANSPOSE_ADD = 6, 18861c1c02c0SLois Curfman McInnes MATOP_SOLVE = 7, 18871c1c02c0SLois Curfman McInnes MATOP_SOLVE_ADD = 8, 18887c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE = 9, 18897c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE_ADD = 10, 18901c1c02c0SLois Curfman McInnes MATOP_LUFACTOR = 11, 18911c1c02c0SLois Curfman McInnes MATOP_CHOLESKYFACTOR = 12, 1892a714c06dSBarry Smith MATOP_SOR = 13, 18931c1c02c0SLois Curfman McInnes MATOP_TRANSPOSE = 14, 18941c1c02c0SLois Curfman McInnes MATOP_GETINFO = 15, 18951c1c02c0SLois Curfman McInnes MATOP_EQUAL = 16, 18961c1c02c0SLois Curfman McInnes MATOP_GET_DIAGONAL = 17, 18971c1c02c0SLois Curfman McInnes MATOP_DIAGONAL_SCALE = 18, 18981c1c02c0SLois Curfman McInnes MATOP_NORM = 19, 18991c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_BEGIN = 20, 19001c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_END = 21, 1901d519adbfSMatthew Knepley MATOP_SET_OPTION = 22, 1902d519adbfSMatthew Knepley MATOP_ZERO_ENTRIES = 23, 1903d519adbfSMatthew Knepley MATOP_ZERO_ROWS = 24, 1904d519adbfSMatthew Knepley MATOP_LUFACTOR_SYMBOLIC = 25, 1905d519adbfSMatthew Knepley MATOP_LUFACTOR_NUMERIC = 26, 1906d519adbfSMatthew Knepley MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27, 1907d519adbfSMatthew Knepley MATOP_CHOLESKY_FACTOR_NUMERIC = 28, 1908e5f2d425SStefano Zampini MATOP_SETUP = 29, 1909d519adbfSMatthew Knepley MATOP_ILUFACTOR_SYMBOLIC = 30, 1910d519adbfSMatthew Knepley MATOP_ICCFACTOR_SYMBOLIC = 31, 1911a5b7ff6bSBarry Smith MATOP_GET_DIAGONAL_BLOCK = 32, 1912e5f2d425SStefano Zampini MATOP_SET_INF = 33, 1913d519adbfSMatthew Knepley MATOP_DUPLICATE = 34, 1914d519adbfSMatthew Knepley MATOP_FORWARD_SOLVE = 35, 1915d519adbfSMatthew Knepley MATOP_BACKWARD_SOLVE = 36, 1916d519adbfSMatthew Knepley MATOP_ILUFACTOR = 37, 1917d519adbfSMatthew Knepley MATOP_ICCFACTOR = 38, 1918d519adbfSMatthew Knepley MATOP_AXPY = 39, 19197dae84e0SHong Zhang MATOP_CREATE_SUBMATRICES = 40, 1920d519adbfSMatthew Knepley MATOP_INCREASE_OVERLAP = 41, 1921d519adbfSMatthew Knepley MATOP_GET_VALUES = 42, 1922d519adbfSMatthew Knepley MATOP_COPY = 43, 1923d519adbfSMatthew Knepley MATOP_GET_ROW_MAX = 44, 1924d519adbfSMatthew Knepley MATOP_SCALE = 45, 1925d519adbfSMatthew Knepley MATOP_SHIFT = 46, 192635153367SBarry Smith MATOP_DIAGONAL_SET = 47, 19279d39f69dSJed Brown MATOP_ZERO_ROWS_COLUMNS = 48, 19289d39f69dSJed Brown MATOP_SET_RANDOM = 49, 1929d519adbfSMatthew Knepley MATOP_GET_ROW_IJ = 50, 1930d519adbfSMatthew Knepley MATOP_RESTORE_ROW_IJ = 51, 1931d519adbfSMatthew Knepley MATOP_GET_COLUMN_IJ = 52, 1932d519adbfSMatthew Knepley MATOP_RESTORE_COLUMN_IJ = 53, 1933d519adbfSMatthew Knepley MATOP_FDCOLORING_CREATE = 54, 1934d519adbfSMatthew Knepley MATOP_COLORING_PATCH = 55, 1935d519adbfSMatthew Knepley MATOP_SET_UNFACTORED = 56, 1936d519adbfSMatthew Knepley MATOP_PERMUTE = 57, 1937d519adbfSMatthew Knepley MATOP_SET_VALUES_BLOCKED = 58, 19387dae84e0SHong Zhang MATOP_CREATE_SUBMATRIX = 59, 1939d519adbfSMatthew Knepley MATOP_DESTROY = 60, 1940d519adbfSMatthew Knepley MATOP_VIEW = 61, 1941d519adbfSMatthew Knepley MATOP_CONVERT_FROM = 62, 1942e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_63=63 */ 19437bab7c10SHong Zhang MATOP_MATMAT_MULT_SYMBOLIC = 64, 19447bab7c10SHong Zhang MATOP_MATMAT_MULT_NUMERIC = 65, 1945d519adbfSMatthew Knepley MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66, 1946d519adbfSMatthew Knepley MATOP_SET_VALUES_LOCAL = 67, 1947d519adbfSMatthew Knepley MATOP_ZERO_ROWS_LOCAL = 68, 1948d519adbfSMatthew Knepley MATOP_GET_ROW_MAX_ABS = 69, 1949d519adbfSMatthew Knepley MATOP_GET_ROW_MIN_ABS = 70, 1950d519adbfSMatthew Knepley MATOP_CONVERT = 71, 1951e5f2d425SStefano Zampini MATOP_HAS_OPERATION = 72, 19529d39f69dSJed Brown /* MATOP_PLACEHOLDER_73=73, */ 1953d519adbfSMatthew Knepley MATOP_SET_VALUES_ADIFOR = 74, 1954d519adbfSMatthew Knepley MATOP_FD_COLORING_APPLY = 75, 1955d519adbfSMatthew Knepley MATOP_SET_FROM_OPTIONS = 76, 1956e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_77=77, */ 1957e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_78=78, */ 19589d39f69dSJed Brown MATOP_FIND_ZERO_DIAGONALS = 79, 1959d519adbfSMatthew Knepley MATOP_MULT_MULTIPLE = 80, 1960d519adbfSMatthew Knepley MATOP_SOLVE_MULTIPLE = 81, 1961d519adbfSMatthew Knepley MATOP_GET_INERTIA = 82, 1962d519adbfSMatthew Knepley MATOP_LOAD = 83, 1963d519adbfSMatthew Knepley MATOP_IS_SYMMETRIC = 84, 1964d519adbfSMatthew Knepley MATOP_IS_HERMITIAN = 85, 1965d519adbfSMatthew Knepley MATOP_IS_STRUCTURALLY_SYMMETRIC = 86, 1966820469bcSHong Zhang MATOP_SET_VALUES_BLOCKEDLOCAL = 87, 1967b41ce5d5SBarry Smith MATOP_CREATE_VECS = 88, 1968e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_89=89, */ 1969d519adbfSMatthew Knepley MATOP_MAT_MULT_SYMBOLIC = 90, 1970d519adbfSMatthew Knepley MATOP_MAT_MULT_NUMERIC = 91, 1971e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_92=92, */ 1972d519adbfSMatthew Knepley MATOP_PTAP_SYMBOLIC = 93, 1973d519adbfSMatthew Knepley MATOP_PTAP_NUMERIC = 94, 1974e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_95=95, */ 1975bda6c4cbSBarry Smith MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96, 1976bda6c4cbSBarry Smith MATOP_MAT_TRANSPOSE_MULT_NUMER = 97, 1977e5f2d425SStefano Zampini MATOP_BIND_TO_CPU = 98, 19787a3c3d58SStefano Zampini MATOP_PRODUCTSETFROMOPTIONS = 99, 19797a3c3d58SStefano Zampini MATOP_PRODUCTSYMBOLIC = 100, 19807a3c3d58SStefano Zampini MATOP_PRODUCTNUMERIC = 101, 1981d519adbfSMatthew Knepley MATOP_CONJUGATE = 102, 1982e5f2d425SStefano Zampini MATOP_VIEW_NATIVE = 103, 1983d519adbfSMatthew Knepley MATOP_SET_VALUES_ROW = 104, 1984d519adbfSMatthew Knepley MATOP_REAL_PART = 105, 1985bda6c4cbSBarry Smith MATOP_IMAGINARY_PART = 106, 1986bda6c4cbSBarry Smith MATOP_GET_ROW_UPPER_TRIANGULAR = 107, 1987bda6c4cbSBarry Smith MATOP_RESTORE_ROW_UPPER_TRIANG = 108, 1988bda6c4cbSBarry Smith MATOP_MAT_SOLVE = 109, 198929eadf9eSStefano Zampini MATOP_MAT_SOLVE_TRANSPOSE = 110, 1990d519adbfSMatthew Knepley MATOP_GET_ROW_MIN = 111, 19910e8d04f7SBarry Smith MATOP_GET_COLUMN_VECTOR = 112, 1992d519adbfSMatthew Knepley MATOP_MISSING_DIAGONAL = 113, 19930e8d04f7SBarry Smith MATOP_GET_SEQ_NONZERO_STRUCTUR = 114, 199489c6957cSBarry Smith MATOP_CREATE = 115, 199589c6957cSBarry Smith MATOP_GET_GHOSTS = 116, 19960e8d04f7SBarry Smith MATOP_GET_LOCAL_SUB_MATRIX = 117, 19970e8d04f7SBarry Smith MATOP_RESTORE_LOCALSUB_MATRIX = 118, 1998eeffb40dSHong Zhang MATOP_MULT_DIAGONAL_BLOCK = 119, 19990e8d04f7SBarry Smith MATOP_HERMITIAN_TRANSPOSE = 120, 20000e8d04f7SBarry Smith MATOP_MULT_HERMITIAN_TRANSPOSE = 121, 20010e8d04f7SBarry Smith MATOP_MULT_HERMITIAN_TRANS_ADD = 122, 20020e8d04f7SBarry Smith MATOP_GET_MULTI_PROC_BLOCK = 123, 20039d39f69dSJed Brown MATOP_FIND_NONZERO_ROWS = 124, 20040e8d04f7SBarry Smith MATOP_GET_COLUMN_NORMS = 125, 20059d39f69dSJed Brown MATOP_INVERT_BLOCK_DIAGONAL = 126, 2006e5f2d425SStefano Zampini MATOP_INVERT_VBLOCK_DIAGONAL = 127, 2007b41ce5d5SBarry Smith MATOP_CREATE_SUB_MATRICES_MPI = 128, 20082b8ad9a3SHong Zhang MATOP_SET_VALUES_BATCH = 129, 2009e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_130=130, */ 20100e8d04f7SBarry Smith MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131, 2011e9b602ebSSatish Balay MATOP_TRANSPOSE_MAT_MULT_NUMER = 132, 20120e8d04f7SBarry Smith MATOP_TRANSPOSE_COLORING_CREAT = 133, 20130e8d04f7SBarry Smith MATOP_TRANS_COLORING_APPLY_SPT = 134, 20140e8d04f7SBarry Smith MATOP_TRANS_COLORING_APPLY_DEN = 135, 2015e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_136=136, */ 20160e8d04f7SBarry Smith MATOP_RART_SYMBOLIC = 137, 20170e8d04f7SBarry Smith MATOP_RART_NUMERIC = 138, 2018e09a3074SHong Zhang MATOP_SET_BLOCK_SIZES = 139, 2019f9426fe0SMark Adams MATOP_AYPX = 140, 20201919a2e2SJed Brown MATOP_RESIDUAL = 141, 20219c8f2541SHong Zhang MATOP_FDCOLORING_SETUP = 142, 2022e5f2d425SStefano Zampini MATOP_FIND_OFFBLOCK_ENTRIES = 143, 20232d033e1fSHong Zhang MATOP_MPICONCATENATESEQ = 144, 2024bb01b7b0SPatrick Sanan MATOP_DESTROYSUBMATRICES = 145, 20254ac41c6fSJose E. Roman MATOP_MAT_TRANSPOSE_SOLVE = 146, 20264ac41c6fSJose E. Roman MATOP_GET_VALUES_LOCAL = 147, 20274ac41c6fSJose E. Roman MATOP_CREATE_GRAPH = 148, 20284ac41c6fSJose E. Roman /* MATOP_PLACEHOLDER_149=149, */ 20294ac41c6fSJose E. Roman MATOP_TRANSPOSE_SYMBOLIC = 150, 20304ac41c6fSJose E. Roman MATOP_ELIMINATE_ZEROS = 151, 20312b938fe4SJose E. Roman MATOP_GET_ROW_SUM_ABS = 152, 203242ce410bSJunchao Zhang MATOP_GET_FACTOR = 153, 203342ce410bSJunchao Zhang MATOP_GET_BLOCK_DIAGONAL = 154, // NOTE: caller of the two op functions owns the returned matrix 203442ce410bSJunchao Zhang MATOP_GET_VBLOCK_DIAGONAL = 155 // and need to destroy it after use. 2035fae171e0SBarry Smith } MatOperation; 20360c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void)); 2037976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void)); 2038976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *); 203994342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *); 2040edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatProductClear()", ) static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A) 2041d71ae5a4SJacob Faibussowitsch { 20429371c9d4SSatish Balay return MatProductClear(A); 20439371c9d4SSatish Balay } 2044014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void)); 2045014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void)); 2046014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *); 2047*d1319cabSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscCtxDestroyFn *); 2048db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType); 2049f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 2050f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 20510c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat); 2052b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType); 2053b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *); 2054112a2221SBarry Smith 205590ace30eSBarry Smith /* 205690ace30eSBarry Smith Codes for matrices stored on disk. By default they are 205790ace30eSBarry Smith stored in a universal format. By changing the format with 20586a9046bcSBarry Smith PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will 205990ace30eSBarry Smith be stored in a way natural for the matrix, for example dense matrices 206090ace30eSBarry Smith would be stored as dense. Matrices stored this way may only be 2061f4403165SShri Abhyankar read into matrices of the same type. 206290ace30eSBarry Smith */ 206390ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1 206490ace30eSBarry Smith 2065014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal); 206675d48cdbSStefano Zampini 20678546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType); 206875d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 20694f58015eSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetAllowRepeated(Mat, PetscBool); 20704f58015eSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetAllowRepeated(Mat, PetscBool *); 207175d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool); 2072f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool); 2073014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *); 20743b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *); 2075014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat); 2076e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 20771f4e1ec7SBarry Smith 2078d9274352SBarry Smith /*S 2079d9274352SBarry Smith MatNullSpace - Object that removes a null space from a vector, i.e. 2080cb6b9846SMatthew Knepley orthogonalizes the vector to a subspace 2081d9274352SBarry Smith 2082f7a9e4ceSBarry Smith Level: advanced 2083d9274352SBarry Smith 20841cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()` 2085d9274352SBarry Smith S*/ 208674637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace; 2087d9274352SBarry Smith 2088014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *); 2089014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *); 2090014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *); 2091d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec); 2092014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *); 20935fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *); 20945fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace); 2095014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace); 2096014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace); 2097014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *); 20984849c82aSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNullSpaces(PetscInt, Mat[], MatNullSpace *[]); 20994849c82aSBarry Smith PETSC_EXTERN PetscErrorCode MatRestoreNullSpaces(PetscInt, Mat[], MatNullSpace *[]); 2100014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *); 2101014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer); 2102014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **); 2103014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *); 210474637425SBarry Smith 2105014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS); 2106014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal); 2107014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *); 21083f1d51d7SBarry Smith 2109014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *); 2110014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *); 2111014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *); 2112c4f061fbSSatish Balay 21130bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *); 21140bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *); 21150bacdadaSStefano Zampini 2116edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperator()", ) static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B) 2117d71ae5a4SJacob Faibussowitsch { 2118f22e26b7SPierre Jolivet return MatComputeOperator(A, PETSC_NULLPTR, B); 21199371c9d4SSatish Balay } 2120edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperatorTranspose()", ) static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B) 2121d71ae5a4SJacob Faibussowitsch { 2122f22e26b7SPierre Jolivet return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B); 21239371c9d4SSatish Balay } 2124b0a32e0cSBarry Smith 212549bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *); 212649bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *); 2127a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **); 2128a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2129a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **); 2130a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **); 2131a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **); 2132a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2133a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **); 2134a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **); 2135dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat); 2136dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]); 2137dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]); 2138910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *); 213949bd79ccSDebojyoti Ghosh 2140014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec); 214104f1ad80SBarry Smith 21424bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDInitializePackage(void); 21434bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDFinalizePackage(void); 21444bf303faSJacob Faibussowitsch 2145014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2146014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec); 2147014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *); 2148014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *)); 2149014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec)); 2150014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt); 2151014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat); 2152014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal); 2153014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt); 2154014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *); 2155014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]); 2156014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *); 2157014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *); 2158e884886fSBarry Smith 21596370053bSBarry Smith /*S 21606370053bSBarry Smith MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free 21616370053bSBarry Smith Jacobian vector products 2162e884886fSBarry Smith 21632ef1f0ffSBarry Smith Level: developer 21642ef1f0ffSBarry Smith 216595452b02SPatrick Sanan Notes: 216687497f52SBarry Smith `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure 21676370053bSBarry Smith 21682ef1f0ffSBarry Smith MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure 21696370053bSBarry Smith 21702ef1f0ffSBarry Smith This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator` 21716370053bSBarry Smith 21721cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`, 21732ef1f0ffSBarry Smith `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator` 21746370053bSBarry Smith S*/ 2175e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD; 2176e884886fSBarry Smith 217776bdecfbSBarry Smith /*J 21782ef1f0ffSBarry Smith MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function 2179e884886fSBarry Smith 218016a05f60SBarry Smith Values: 2181af27ebaaSBarry Smith + `MATMFFD_DS` - an algorithm described by Dennis and Schnabel {cite}`dennis:83` 2182af27ebaaSBarry Smith - `MATMFFD_WP` - the Walker-Pernice {cite}`pw98` strategy. 218316a05f60SBarry Smith 2184e884886fSBarry Smith Level: beginner 2185e884886fSBarry Smith 21861cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()` 218776bdecfbSBarry Smith J*/ 218819fd82e9SBarry Smith typedef const char *MatMFFDType; 2189e884886fSBarry Smith #define MATMFFD_DS "ds" 2190e884886fSBarry Smith #define MATMFFD_WP "wp" 2191e884886fSBarry Smith 219219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType); 2193bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD)); 2194e884886fSBarry Smith 2195014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal); 2196014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool); 2197e884886fSBarry Smith 219861ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType); 219961ab5df0SBarry Smith 2200014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *); 2201014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *); 22027dbadf16SMatthew Knepley 220353022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS 22048434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscScalar(MatH2OpusKernelFn)(PetscInt, PetscReal[], PetscReal[], void *); 22058434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatH2OpusKernelFn *MatH2OpusKernel; 2206659ebe53SBarry Smith 22078434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernelFn *, void *, PetscReal, PetscInt, PetscInt, Mat *); 220853022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *); 220953022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal); 221053022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat); 221153022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal); 221253022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool); 221353022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *); 221453022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *); 221553022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *); 2216300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar); 2217a0d2e7d8SStefano Zampini #endif 2218a0d2e7d8SStefano Zampini 2219c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL 22208434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode(MatHtoolKernelFn)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *); 22218434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatHtoolKernelFn *MatHtoolKernel; 2222659ebe53SBarry Smith 22238434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernelFn *, void *, Mat *); 22248434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernelFn *, void *); 222598e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *); 222698e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *); 222798e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool); 22282ef1f0ffSBarry Smith 2229c7a4214aSPierre Jolivet /*E 223087497f52SBarry Smith MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL` 2231c7a4214aSPierre Jolivet 2232c7a4214aSPierre Jolivet Values: 223387497f52SBarry Smith + `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation 223487497f52SBarry Smith . `MAT_HTOOL_COMPRESSOR_FULL_ACA` - full adaptive cross approximation 223587497f52SBarry Smith - `MAT_HTOOL_COMPRESSOR_SVD` - singular value decomposition 2236c7a4214aSPierre Jolivet 223716a05f60SBarry Smith Level: intermediate 223816a05f60SBarry Smith 22391cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType` 2240c7a4214aSPierre Jolivet E*/ 22419371c9d4SSatish Balay typedef enum { 22429371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA, 22439371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_FULL_ACA, 22449371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_SVD 22459371c9d4SSatish Balay } MatHtoolCompressorType; 22462ef1f0ffSBarry Smith 224798e73e17SPierre Jolivet /*E 224887497f52SBarry Smith MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL` 224998e73e17SPierre Jolivet 225098e73e17SPierre Jolivet Values: 225187497f52SBarry Smith + `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default) - axis computed via principle component analysis, split uniformly 225287497f52SBarry Smith . `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC` - axis computed via principle component analysis, split barycentrically 225387497f52SBarry Smith . `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR` - axis along the largest extent of the bounding box, split uniformly 225487497f52SBarry Smith - `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically 225598e73e17SPierre Jolivet 225616a05f60SBarry Smith Level: intermediate 225716a05f60SBarry Smith 22582ef1f0ffSBarry Smith Note: 22592ef1f0ffSBarry Smith Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types 226098e73e17SPierre Jolivet 22611cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType` 226298e73e17SPierre Jolivet E*/ 22639371c9d4SSatish Balay typedef enum { 22649371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_PCA_REGULAR, 22659371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC, 22669371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR, 22679371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC 22689371c9d4SSatish Balay } MatHtoolClusteringType; 2269c7a4214aSPierre Jolivet #endif 2270c7a4214aSPierre Jolivet 227197969023SHong Zhang #ifdef PETSC_HAVE_MUMPS 2272014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt); 2273bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *); 2274b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal); 2275bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *); 2276bc6112feSHong Zhang 2277ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *); 2278ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *); 2279ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *); 2280ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *); 22815c0bae8cSAshish Patel PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **); 228289a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat); 22830e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat); 228497969023SHong Zhang #endif 228523a5497aSJed Brown 2286b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO 2287d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt); 2288b500a6b7SJose David Bermeol #endif 2289b500a6b7SJose David Bermeol 2290d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO 2291d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt); 2292d305a81bSVasiliy Kozyrev #endif 2293d305a81bSVasiliy Kozyrev 2294d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU 2295014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal); 2296d954db57SHong Zhang #endif 2297d954db57SHong Zhang 2298fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST 2299fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *); 2300fb785984SHong Zhang #endif 2301fb785984SHong Zhang 2302575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK 2303542aee0fSPieter Ghysels /*E 230429e0a805SPieter Ghysels MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK` 2305542aee0fSPieter Ghysels 23062ef1f0ffSBarry Smith Values: 23072ef1f0ffSBarry Smith + `MAT_STRUMPACK_NATURAL` - use the current ordering 23082ef1f0ffSBarry Smith . `MAT_STRUMPACK_METIS` - use MeTis to compute an ordering 23092ef1f0ffSBarry Smith . `MAT_STRUMPACK_PARMETIS` - use ParMeTis to compute an ordering 23102ef1f0ffSBarry Smith . `MAT_STRUMPACK_SCOTCH` - use Scotch to compute an ordering 23112ef1f0ffSBarry Smith . `MAT_STRUMPACK_PTSCOTCH` - use parallel Scotch to compute an ordering 231229e0a805SPieter Ghysels . `MAT_STRUMPACK_RCM` - use an RCM ordering 231329e0a805SPieter Ghysels . `MAT_STRUMPACK_GEOMETRIC` - use a geometric ordering (needs mesh info from user) 231429e0a805SPieter Ghysels . `MAT_STRUMPACK_AMD` - approximate minimum degree 231529e0a805SPieter Ghysels . `MAT_STRUMPACK_MMD` - multiple minimum degree 231629e0a805SPieter Ghysels . `MAT_STRUMPACK_AND` - approximate nested dissection 231729e0a805SPieter Ghysels . `MAT_STRUMPACK_MLF` - minimum local fill 231829e0a805SPieter Ghysels - `MAT_STRUMPACK_SPECTRAL` - spectral nested dissection 23192ef1f0ffSBarry Smith 232016a05f60SBarry Smith Level: intermediate 232116a05f60SBarry Smith 23222ef1f0ffSBarry Smith Developer Note: 23232ef1f0ffSBarry Smith Should be called `MatSTRUMPACKReorderingType` 23242ef1f0ffSBarry Smith 232529e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetReordering()` 2326542aee0fSPieter Ghysels E*/ 23279371c9d4SSatish Balay typedef enum { 232829e0a805SPieter Ghysels MAT_STRUMPACK_NATURAL, 232929e0a805SPieter Ghysels MAT_STRUMPACK_METIS, 233029e0a805SPieter Ghysels MAT_STRUMPACK_PARMETIS, 233129e0a805SPieter Ghysels MAT_STRUMPACK_SCOTCH, 233229e0a805SPieter Ghysels MAT_STRUMPACK_PTSCOTCH, 233329e0a805SPieter Ghysels MAT_STRUMPACK_RCM, 233429e0a805SPieter Ghysels MAT_STRUMPACK_GEOMETRIC, 233529e0a805SPieter Ghysels MAT_STRUMPACK_AMD, 233629e0a805SPieter Ghysels MAT_STRUMPACK_MMD, 233729e0a805SPieter Ghysels MAT_STRUMPACK_AND, 233829e0a805SPieter Ghysels MAT_STRUMPACK_MLF, 233929e0a805SPieter Ghysels MAT_STRUMPACK_SPECTRAL 23409371c9d4SSatish Balay } MatSTRUMPACKReordering; 23412ef1f0ffSBarry Smith 234234f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering); 234329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetReordering(Mat, MatSTRUMPACKReordering *); 234429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricNxyz(Mat, PetscInt, PetscInt, PetscInt); 234529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricComponents(Mat, PetscInt); 234629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricWidth(Mat, PetscInt); 2347575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool); 234829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetColPerm(Mat, PetscBool *); 234929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGPU(Mat, PetscBool); 235029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetGPU(Mat, PetscBool *); 235129e0a805SPieter Ghysels 235229e0a805SPieter Ghysels /*E 235329e0a805SPieter Ghysels MatSTRUMPACKCompressionType - Compression used in the approximate sparse factorization solver `MATSOLVERSTRUMPACK` 235429e0a805SPieter Ghysels 235529e0a805SPieter Ghysels Values: 235629e0a805SPieter Ghysels + `MAT_STRUMPACK_COMPRESSION_TYPE_NONE` - no compression, direct solver 235729e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_HSS` - hierarchically semi-separable 235829e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_BLR` - block low rank 235929e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_HODLR` - hierarchically off-diagonal low rank (requires ButterfyPACK support, configure with --download-butterflypack) 236029e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR` - hybrid of BLR and HODLR (requires ButterfyPACK support, configure with --download-butterflypack) 236129e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR` - hybrid of lossy (ZFP), BLR and HODLR (requires ButterfyPACK and ZFP support, configure with --download-butterflypack --download-zfp) 236229e0a805SPieter Ghysels . `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS` - lossless compression (requires ZFP support, configure with --download-zfp) 236329e0a805SPieter Ghysels - `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY` - lossy compression (requires ZFP support, configure with --download-zfp) 236429e0a805SPieter Ghysels 236529e0a805SPieter Ghysels Level: intermediate 236629e0a805SPieter Ghysels 236729e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetCompression()` 236829e0a805SPieter Ghysels E*/ 236929e0a805SPieter Ghysels typedef enum { 237029e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_NONE, 237129e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_HSS, 237229e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_BLR, 237329e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_HODLR, 237429e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR, 237529e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR, 237629e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS, 237729e0a805SPieter Ghysels MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY 237829e0a805SPieter Ghysels } MatSTRUMPACKCompressionType; 237929e0a805SPieter Ghysels 238029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompression(Mat, MatSTRUMPACKCompressionType); 238129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompression(Mat, MatSTRUMPACKCompressionType *); 238229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompRelTol(Mat, PetscReal); 238329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompRelTol(Mat, PetscReal *); 238429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompAbsTol(Mat, PetscReal); 238529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompAbsTol(Mat, PetscReal *); 238629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompMinSepSize(Mat, PetscInt); 238729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompMinSepSize(Mat, PetscInt *); 238829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLeafSize(Mat, PetscInt); 238929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLeafSize(Mat, PetscInt *); 239029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLossyPrecision(Mat, PetscInt); 239129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLossyPrecision(Mat, PetscInt *); 239229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompButterflyLevels(Mat, PetscInt); 239329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompButterflyLevels(Mat, PetscInt *); 2394575704cbSPieter Ghysels #endif 2395575704cbSPieter Ghysels 2396b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool); 23972216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *); 2398edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 13, 0, "MatBindToCPU()", ) static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg) 2399d71ae5a4SJacob Faibussowitsch { 24009371c9d4SSatish Balay return MatBindToCPU(A, flg); 24019371c9d4SSatish Balay } 240265a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool); 2403e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *); 2404e7e92044SBarry Smith 2405aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA 24063f9c0db1SPaul Mullowney /*E 24072ef1f0ffSBarry Smith MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU) 24082692e278SPaul Mullowney matrices. 2409e057df02SPaul Mullowney 24102ef1f0ffSBarry Smith Values: 241187497f52SBarry Smith + `MAT_CUSPARSE_CSR` - Compressed Sparse Row 241287497f52SBarry Smith . `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later). 241387497f52SBarry Smith - `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later). 2414e057df02SPaul Mullowney 2415e057df02SPaul Mullowney Level: intermediate 2416e057df02SPaul Mullowney 24171cc06b55SBarry Smith .seealso: [](ch_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation` 2418e057df02SPaul Mullowney E*/ 2419e057df02SPaul Mullowney 24209371c9d4SSatish Balay typedef enum { 24219371c9d4SSatish Balay MAT_CUSPARSE_CSR, 24229371c9d4SSatish Balay MAT_CUSPARSE_ELL, 24239371c9d4SSatish Balay MAT_CUSPARSE_HYB 24249371c9d4SSatish Balay } MatCUSPARSEStorageFormat; 2425e057df02SPaul Mullowney 2426e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */ 2427e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[]; 2428e057df02SPaul Mullowney 24293f9c0db1SPaul Mullowney /*E 24302ef1f0ffSBarry Smith MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU) 24312692e278SPaul Mullowney matrices whose operation should use a particular storage format. 2432e057df02SPaul Mullowney 24332ef1f0ffSBarry Smith Values: 24344cf0e950SBarry Smith + `MAT_CUSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()` 24354cf0e950SBarry Smith . `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()` 24364cf0e950SBarry Smith . `MAT_CUSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()` 24372ef1f0ffSBarry Smith - `MAT_CUSPARSE_ALL` - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices 2438e057df02SPaul Mullowney 2439e057df02SPaul Mullowney Level: intermediate 2440e057df02SPaul Mullowney 24411cc06b55SBarry Smith .seealso: [](ch_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat` 2442e057df02SPaul Mullowney E*/ 24439371c9d4SSatish Balay typedef enum { 24449371c9d4SSatish Balay MAT_CUSPARSE_MULT_DIAG, 24459371c9d4SSatish Balay MAT_CUSPARSE_MULT_OFFDIAG, 24469371c9d4SSatish Balay MAT_CUSPARSE_MULT, 24479371c9d4SSatish Balay MAT_CUSPARSE_ALL 24489371c9d4SSatish Balay } MatCUSPARSEFormatOperation; 2449e057df02SPaul Mullowney 245010e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 245110e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2452e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat); 2453365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool); 24545f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 24555f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 24565f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **); 24575f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **); 24585f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **); 24595f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **); 24605f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **); 24615f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **); 2462637a0070SStefano Zampini 2463637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 2464637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 2465637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **); 2466637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **); 2467637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **); 2468637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **); 2469637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **); 2470637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **); 2471637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *); 2472d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *); 2473637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat); 24743d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *); 24752d1451d4SHong Zhang 24762d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 24772d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 24789ae82921SPaul Mullowney #endif 24799ae82921SPaul Mullowney 248047d993e7Ssuyashtn #ifdef PETSC_HAVE_HIP 248147d993e7Ssuyashtn /*E 24822ef1f0ffSBarry Smith MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU) 248347d993e7Ssuyashtn matrices. 248447d993e7Ssuyashtn 24852ef1f0ffSBarry Smith Values: 24862ef1f0ffSBarry Smith + `MAT_HIPSPARSE_CSR` - Compressed Sparse Row 24872ef1f0ffSBarry Smith . `MAT_HIPSPARSE_ELL` - Ellpack 24882ef1f0ffSBarry Smith - `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format 248947d993e7Ssuyashtn 249016a05f60SBarry Smith Level: intermediate 249116a05f60SBarry Smith 24921cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation` 249347d993e7Ssuyashtn E*/ 249447d993e7Ssuyashtn 249547d993e7Ssuyashtn typedef enum { 249647d993e7Ssuyashtn MAT_HIPSPARSE_CSR, 249747d993e7Ssuyashtn MAT_HIPSPARSE_ELL, 249847d993e7Ssuyashtn MAT_HIPSPARSE_HYB 249947d993e7Ssuyashtn } MatHIPSPARSEStorageFormat; 250047d993e7Ssuyashtn 250147d993e7Ssuyashtn /* these will be strings associated with enumerated type defined above */ 250247d993e7Ssuyashtn PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[]; 250347d993e7Ssuyashtn 250447d993e7Ssuyashtn /*E 25052ef1f0ffSBarry Smith MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU) 250647d993e7Ssuyashtn matrices whose operation should use a particular storage format. 250747d993e7Ssuyashtn 25082ef1f0ffSBarry Smith Values: 25092ef1f0ffSBarry Smith + `MAT_HIPSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()` 25104cf0e950SBarry Smith . `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()` 25112ef1f0ffSBarry Smith . `MAT_HIPSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()` 25122ef1f0ffSBarry Smith - `MAT_HIPSPARSE_ALL` - sets the storage format for all HIPSPARSE (GPU) matrices 25132ef1f0ffSBarry Smith 251416a05f60SBarry Smith Level: intermediate 251516a05f60SBarry Smith 25161cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat` 251747d993e7Ssuyashtn E*/ 251847d993e7Ssuyashtn typedef enum { 251947d993e7Ssuyashtn MAT_HIPSPARSE_MULT_DIAG, 252047d993e7Ssuyashtn MAT_HIPSPARSE_MULT_OFFDIAG, 252147d993e7Ssuyashtn MAT_HIPSPARSE_MULT, 252247d993e7Ssuyashtn MAT_HIPSPARSE_ALL 252347d993e7Ssuyashtn } MatHIPSPARSEFormatOperation; 252447d993e7Ssuyashtn 252547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 252647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 252747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat); 252847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool); 252947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 253047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 253147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **); 253247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **); 253347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **); 253447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **); 253547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **); 253647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **); 253747d993e7Ssuyashtn 253847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 253947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 254047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **); 254147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **); 254247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **); 254347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **); 254447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **); 254547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **); 254647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *); 254747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *); 254847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat); 25493d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *); 2550773bf0f6SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2551773bf0f6SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 255247d993e7Ssuyashtn #endif 255347d993e7Ssuyashtn 2554d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL) 2555d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2556d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2557d67ff14aSKarl Rupp #endif 2558d67ff14aSKarl Rupp 25594bf303faSJacob Faibussowitsch #if PetscDefined(HAVE_KOKKOS) 25604bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 25614bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 25624bf303faSJacob Faibussowitsch #endif 25634bf303faSJacob Faibussowitsch 256454efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW) 2565014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec); 2566014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec); 25672a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *); 256854efbe56SHong Zhang #endif 256954efbe56SHong Zhang 2570d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 2571d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2572d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt); 2573d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *); 2574d24d4204SJose E. Roman #endif 2575d24d4204SJose E. Roman 2576014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *); 2577014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *); 2578014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]); 2579014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]); 2580014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***); 2581014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *); 258219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType); 2583014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]); 2584014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat); 2585d8588912SDave May 25862ce66baaSPierre Jolivet PETSC_EXTERN PetscErrorCode MatFilter(Mat, PetscReal, PetscBool, PetscBool); 25872ce66baaSPierre Jolivet PETSC_DEPRECATED_FUNCTION(3, 20, 0, "MatFilter()", ) static inline PetscErrorCode MatChop(Mat A, PetscReal tol) 25882ce66baaSPierre Jolivet { 25892ce66baaSPierre Jolivet return MatFilter(A, tol, PETSC_FALSE, PETSC_FALSE); 25902ce66baaSPierre Jolivet } 2591e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *); 25924325cce7SMatthew G Knepley 2593b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **); 259453dd7562SDmitry Karpeev 2595c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat); 2596c094ef40SMatthew G. Knepley 259702218ef1SBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderMerge(Mat, Mat *); 2598539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *); 25991a2c6b5cSJunchao Zhang 26007ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *); 260172833a62Smarkadams4 2602e02fb3cdSMark Adams PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, PetscInt, PetscInt[], Mat *); 260358c11ad4SPierre Jolivet PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat, PetscBool); 2604ad6ad4e1SHansol Suh 2605d16ceb75SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *); 26063444e80cSBarry Smith 26073444e80cSBarry Smith PETSC_EXTERN PetscErrorCode MatSetHPL(Mat, int); 26083444e80cSBarry Smith #define PETSCBMHPL "hpl" 2609