xref: /petsc/include/petscmat.h (revision d1319cabf2d710a03c4ec7b0ff299043e6db9cf2)
12eac72dbSBarry Smith /*
22eac72dbSBarry Smith      Include file for the matrix component of PETSc
32eac72dbSBarry Smith */
4a4963045SJacob Faibussowitsch #pragma once
5ac09b921SBarry Smith 
62c8e378dSBarry Smith #include <petscvec.h>
72eac72dbSBarry Smith 
8ac09b921SBarry Smith /* SUBMANSEC = Mat */
9ac09b921SBarry Smith 
10d9274352SBarry Smith /*S
118f6c3df8SBarry Smith    Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without
12af27ebaaSBarry Smith          an explicit sparse representation (such as matrix-free operators). Also used to hold representations of graphs
13af27ebaaSBarry Smith          for graph operations such as coloring, `MatColoringCreate()`
142eac72dbSBarry Smith 
15d91e6319SBarry Smith    Level: beginner
16d91e6319SBarry Smith 
172ef1f0ffSBarry Smith    Note:
181cc06b55SBarry Smith    See [](doc_matrix), [](ch_matrices) and `MatType` for available matrix types
192ef1f0ffSBarry Smith 
201cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()`
21d9274352SBarry Smith S*/
22d9274352SBarry Smith typedef struct _p_Mat *Mat;
23d9274352SBarry Smith 
2476bdecfbSBarry Smith /*J
258f6c3df8SBarry Smith    MatType - String with the name of a PETSc matrix type
26d9274352SBarry Smith 
27d9274352SBarry Smith    Level: beginner
28d9274352SBarry Smith 
292ef1f0ffSBarry Smith    Note:
302ef1f0ffSBarry Smith    [](doc_matrix) for a table of available matrix types
312ef1f0ffSBarry Smith 
321cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()`
3376bdecfbSBarry Smith J*/
3419fd82e9SBarry Smith typedef const char *MatType;
35273d9f13SBarry Smith #define MATSAME                      "same"
365a11e1b2SBarry Smith #define MATMAIJ                      "maij"
37273d9f13SBarry Smith #define MATSEQMAIJ                   "seqmaij"
38273d9f13SBarry Smith #define MATMPIMAIJ                   "mpimaij"
3949bd79ccSDebojyoti Ghosh #define MATKAIJ                      "kaij"
4049bd79ccSDebojyoti Ghosh #define MATSEQKAIJ                   "seqkaij"
4149bd79ccSDebojyoti Ghosh #define MATMPIKAIJ                   "mpikaij"
42273d9f13SBarry Smith #define MATIS                        "is"
435a11e1b2SBarry Smith #define MATAIJ                       "aij"
44273d9f13SBarry Smith #define MATSEQAIJ                    "seqaij"
45273d9f13SBarry Smith #define MATMPIAIJ                    "mpiaij"
465a11e1b2SBarry Smith #define MATAIJCRL                    "aijcrl"
475a11e1b2SBarry Smith #define MATSEQAIJCRL                 "seqaijcrl"
485a11e1b2SBarry Smith #define MATMPIAIJCRL                 "mpiaijcrl"
499ae82921SPaul Mullowney #define MATAIJCUSPARSE               "aijcusparse"
509ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE            "seqaijcusparse"
519ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE            "mpiaijcusparse"
5247d993e7Ssuyashtn #define MATAIJHIPSPARSE              "aijhipsparse"
5347d993e7Ssuyashtn #define MATSEQAIJHIPSPARSE           "seqaijhipsparse"
5447d993e7Ssuyashtn #define MATMPIAIJHIPSPARSE           "mpiaijhipsparse"
558c3ff71bSJunchao Zhang #define MATAIJKOKKOS                 "aijkokkos"
568c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS              "seqaijkokkos"
578c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS              "mpiaijkokkos"
58d67ff14aSKarl Rupp #define MATAIJVIENNACL               "aijviennacl"
59d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL            "seqaijviennacl"
60d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL            "mpiaijviennacl"
615a11e1b2SBarry Smith #define MATAIJPERM                   "aijperm"
625a11e1b2SBarry Smith #define MATSEQAIJPERM                "seqaijperm"
635a11e1b2SBarry Smith #define MATMPIAIJPERM                "mpiaijperm"
644dfdc2d9SRichard Tran Mills #define MATAIJSELL                   "aijsell"
654dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL                "seqaijsell"
664dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL                "mpiaijsell"
674a2a386eSRichard Tran Mills #define MATAIJMKL                    "aijmkl"
684a2a386eSRichard Tran Mills #define MATSEQAIJMKL                 "seqaijmkl"
694a2a386eSRichard Tran Mills #define MATMPIAIJMKL                 "mpiaijmkl"
70b5b72c8aSIrina Sokolova #define MATBAIJMKL                   "baijmkl"
71b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL                "seqbaijmkl"
72b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL                "mpibaijmkl"
73273d9f13SBarry Smith #define MATSHELL                     "shell"
74c1fff1c6SRichard Tran Mills #define MATCENTERING                 "centering"
755a11e1b2SBarry Smith #define MATDENSE                     "dense"
76637a0070SStefano Zampini #define MATDENSECUDA                 "densecuda"
7747d993e7Ssuyashtn #define MATDENSEHIP                  "densehip"
78209238afSKris Buschelman #define MATSEQDENSE                  "seqdense"
79bfc799aaSStefano Zampini #define MATSEQDENSECUDA              "seqdensecuda"
8047d993e7Ssuyashtn #define MATSEQDENSEHIP               "seqdensehip"
81273d9f13SBarry Smith #define MATMPIDENSE                  "mpidense"
82637a0070SStefano Zampini #define MATMPIDENSECUDA              "mpidensecuda"
8347d993e7Ssuyashtn #define MATMPIDENSEHIP               "mpidensehip"
84db31f6deSJed Brown #define MATELEMENTAL                 "elemental"
85d24d4204SJose E. Roman #define MATSCALAPACK                 "scalapack"
865a11e1b2SBarry Smith #define MATBAIJ                      "baij"
87273d9f13SBarry Smith #define MATSEQBAIJ                   "seqbaij"
88273d9f13SBarry Smith #define MATMPIBAIJ                   "mpibaij"
89273d9f13SBarry Smith #define MATMPIADJ                    "mpiadj"
905a11e1b2SBarry Smith #define MATSBAIJ                     "sbaij"
91273d9f13SBarry Smith #define MATSEQSBAIJ                  "seqsbaij"
92273d9f13SBarry Smith #define MATMPISBAIJ                  "mpisbaij"
93cebc7f6cSBarry Smith #define MATMFFD                      "mffd"
94c8a8475eSBarry Smith #define MATNORMAL                    "normal"
95c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN           "normalh"
96ab92ecdeSBarry Smith #define MATLRC                       "lrc"
972a6744ebSBarry Smith #define MATSCATTER                   "scatter"
98421e10b8SBarry Smith #define MATBLOCKMAT                  "blockmat"
99793850ffSBarry Smith #define MATCOMPOSITE                 "composite"
1001f8c7532SHong Zhang #define MATFFT                       "fft"
1011f8c7532SHong Zhang #define MATFFTW                      "fftw"
102e133240eSMatthew G Knepley #define MATSEQCUFFT                  "seqcufft"
10347d993e7Ssuyashtn #define MATSEQHIPFFT                 "seqhipfft"
104edd03b47SJacob Faibussowitsch #define MATTRANSPOSEMAT              PETSC_DEPRECATED_MACRO(3, 18, 0, "MATTRANSPOSEVIRTUAL", ) "transpose"
105013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL          "transpose"
106013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose"
10772ca8751SBarry Smith #define MATSCHURCOMPLEMENT           "schurcomplement"
1081d6018f0SLisandro Dalcin #define MATPYTHON                    "python"
10963c07aadSStefano Zampini #define MATHYPRE                     "hypre"
110f91d8e95SBarry Smith #define MATHYPRESTRUCT               "hyprestruct"
111a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT              "hypresstruct"
112ee1cef2cSJed Brown #define MATSUBMATRIX                 "submatrix"
1132c0dbf93SJed Brown #define MATLOCALREF                  "localref"
114d8588912SDave May #define MATNEST                      "nest"
115c094ef40SMatthew G. Knepley #define MATPREALLOCATOR              "preallocator"
116d4002b98SHong Zhang #define MATSELL                      "sell"
117d4002b98SHong Zhang #define MATSEQSELL                   "seqsell"
118d4002b98SHong Zhang #define MATMPISELL                   "mpisell"
1192d1451d4SHong Zhang #define MATSELLCUDA                  "sellcuda"
1202d1451d4SHong Zhang #define MATSEQSELLCUDA               "seqsellcuda"
1212d1451d4SHong Zhang #define MATMPISELLCUDA               "mpisellcuda"
122773bf0f6SHong Zhang #define MATSELLHIP                   "sellhip"
123773bf0f6SHong Zhang #define MATSEQSELLHIP                "seqsellhip"
124773bf0f6SHong Zhang #define MATMPISELLHIP                "mpisellhip"
125a3b2e22bSHong Zhang #define MATDUMMY                     "dummy"
126cd929ea3SAlp Dener #define MATLMVM                      "lmvm"
12778e4361aSAlp Dener #define MATLMVMDFP                   "lmvmdfp"
128bbb72809SHansol Suh #define MATLMVMDDFP                  "lmvmddfp"
12978e4361aSAlp Dener #define MATLMVMBFGS                  "lmvmbfgs"
130bbb72809SHansol Suh #define MATLMVMDBFGS                 "lmvmdbfgs"
131bbb72809SHansol Suh #define MATLMVMDQN                   "lmvmdqn"
13278e4361aSAlp Dener #define MATLMVMSR1                   "lmvmsr1"
133864588a7SAlp Dener #define MATLMVMBROYDEN               "lmvmbroyden"
134864588a7SAlp Dener #define MATLMVMBADBROYDEN            "lmvmbadbroyden"
135864588a7SAlp Dener #define MATLMVMSYMBROYDEN            "lmvmsymbroyden"
136864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN         "lmvmsymbadbroyden"
137864588a7SAlp Dener #define MATLMVMDIAGBROYDEN           "lmvmdiagbroyden"
1383423f386SBarry Smith #define MATCONSTANTDIAGONAL          "constantdiagonal"
139345a4b08SToby Isaac #define MATDIAGONAL                  "diagonal"
140c7a4214aSPierre Jolivet #define MATHTOOL                     "htool"
14153022affSStefano Zampini #define MATH2OPUS                    "h2opus"
142773941d6SBarry Smith 
14376bdecfbSBarry Smith /*J
144af27ebaaSBarry Smith    MatSolverType - String with the name of a PETSc factorization-based matrix solver type.
1459989ab13SBarry Smith 
146c2b89b5dSBarry Smith    For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc
1479989ab13SBarry Smith 
1489989ab13SBarry Smith    Level: beginner
1499989ab13SBarry Smith 
1502ef1f0ffSBarry Smith    Note:
15116a05f60SBarry Smith    `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as
15216a05f60SBarry Smith    a ./configure option to install them
153c7ccbb75SBarry Smith 
1541cc06b55SBarry Smith .seealso: [](sec_matfactor), [](ch_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()`
15576bdecfbSBarry Smith J*/
156ea799195SBarry Smith typedef const char *MatSolverType;
1572692d6eeSBarry Smith #define MATSOLVERSUPERLU      "superlu"
1582692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST "superlu_dist"
15908f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK    "strumpack"
1602692d6eeSBarry Smith #define MATSOLVERUMFPACK      "umfpack"
16120db9a53SJed Brown #define MATSOLVERCHOLMOD      "cholmod"
162d89f5e7aSBarry Smith #define MATSOLVERKLU          "klu"
163d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL    "elemental"
164d24d4204SJose E. Roman #define MATSOLVERSCALAPACK    "scalapack"
1652692d6eeSBarry Smith #define MATSOLVERESSL         "essl"
1662692d6eeSBarry Smith #define MATSOLVERLUSOL        "lusol"
1672692d6eeSBarry Smith #define MATSOLVERMUMPS        "mumps"
168d615f992SSatish Balay #define MATSOLVERMKL_PARDISO  "mkl_pardiso"
169d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO "mkl_cpardiso"
1702692d6eeSBarry Smith #define MATSOLVERPASTIX       "pastix"
1712692d6eeSBarry Smith #define MATSOLVERMATLAB       "matlab"
1722692d6eeSBarry Smith #define MATSOLVERPETSC        "petsc"
1732692d6eeSBarry Smith #define MATSOLVERBAS          "bas"
1749ae82921SPaul Mullowney #define MATSOLVERCUSPARSE     "cusparse"
175bfc799aaSStefano Zampini #define MATSOLVERCUDA         "cuda"
17647d993e7Ssuyashtn #define MATSOLVERHIPSPARSE    "hipsparse"
17747d993e7Ssuyashtn #define MATSOLVERHIP          "hip"
178930e68a5SMark Adams #define MATSOLVERKOKKOS       "kokkos"
179a2fc1e05SToby Isaac #define MATSOLVERSPQR         "spqr"
1801dd4f53aSPierre Jolivet #define MATSOLVERHTOOL        "htool"
181c0cdd4a1SDahai Guo 
182b24902e0SBarry Smith /*E
183b24902e0SBarry Smith     MatFactorType - indicates what type of factorization is requested
184b24902e0SBarry Smith 
1852ef1f0ffSBarry Smith     Values:
1862ef1f0ffSBarry Smith +  `MAT_FACTOR_LU`       - LU factorization
1872ef1f0ffSBarry Smith .  `MAT_FACTOR_CHOLESKY` - Cholesky factorization
1882ef1f0ffSBarry Smith .  `MAT_FACTOR_ILU`      - ILU factorization
1892ef1f0ffSBarry Smith .  `MAT_FACTOR_ICC`      - incomplete Cholesky factorization
1902ef1f0ffSBarry Smith .  `MAT_FACTOR_ILUDT`    - ILU factorization with drop tolerance
1912ef1f0ffSBarry Smith -  `MAT_FACTOR_QR`       - QR factorization
192b24902e0SBarry Smith 
19316a05f60SBarry Smith     Level: beginner
19416a05f60SBarry Smith 
1951cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()`
196b24902e0SBarry Smith E*/
1979371c9d4SSatish Balay typedef enum {
1989371c9d4SSatish Balay   MAT_FACTOR_NONE,
1999371c9d4SSatish Balay   MAT_FACTOR_LU,
2009371c9d4SSatish Balay   MAT_FACTOR_CHOLESKY,
2019371c9d4SSatish Balay   MAT_FACTOR_ILU,
2029371c9d4SSatish Balay   MAT_FACTOR_ICC,
2039371c9d4SSatish Balay   MAT_FACTOR_ILUDT,
2049371c9d4SSatish Balay   MAT_FACTOR_QR,
2059371c9d4SSatish Balay   MAT_FACTOR_NUM_TYPES
2069371c9d4SSatish Balay } MatFactorType;
207014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[];
208e92e720dSBarry Smith 
209ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *);
210ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *);
211f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *);
212edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 15, 0, "MatFactorGetCanUseOrdering()", ) static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b)
213d71ae5a4SJacob Faibussowitsch {
2149371c9d4SSatish Balay   return MatFactorGetCanUseOrdering(A, b);
2159371c9d4SSatish Balay }
216ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *);
217014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *);
2187abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType);
2198434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode(MatSolverFn)(Mat, MatFactorType, Mat *);
2208434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatSolverFn *MatSolverFunction;
22107e0ed13SBarry Smith 
2228434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFn *);
2238434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFn **);
224edd03b47SJacob Faibussowitsch typedef MatSolverType       MatSolverPackage PETSC_DEPRECATED_TYPEDEF(3, 9, 0, "MatSolverType", );
2258434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeRegister()", ) static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFn *f)
226d71ae5a4SJacob Faibussowitsch {
2279371c9d4SSatish Balay   return MatSolverTypeRegister(stype, mtype, ftype, f);
2289371c9d4SSatish Balay }
2298434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeGet()", ) static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFn **f)
230d71ae5a4SJacob Faibussowitsch {
2319371c9d4SSatish Balay   return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f);
2329371c9d4SSatish Balay }
2339989ab13SBarry Smith 
2344222ddf1SHong Zhang /*E
23595bd0b28SBarry Smith     MatProductType - indicates what type of matrix product to compute
2364222ddf1SHong Zhang 
2372ef1f0ffSBarry Smith     Values:
2382ef1f0ffSBarry Smith +  `MATPRODUCT_AB`   - product of two matrices
2392ef1f0ffSBarry Smith .  `MATPRODUCT_AtB`  - product of the transpose of a given matrix with a matrix
2402ef1f0ffSBarry Smith .  `MATPRODUCT_ABt`  - product of a matrix with the transpose of another given matrix
2412ef1f0ffSBarry Smith .  `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself
2422ef1f0ffSBarry Smith .  `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix
2432ef1f0ffSBarry Smith -  `MATPRODUCT_ABC`  - the product of three matrices
2442ef1f0ffSBarry Smith 
24516a05f60SBarry Smith     Level: beginner
24616a05f60SBarry Smith 
2471cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatProductSetType()`
2484222ddf1SHong Zhang E*/
2499371c9d4SSatish Balay typedef enum {
2509371c9d4SSatish Balay   MATPRODUCT_UNSPECIFIED = 0,
2519371c9d4SSatish Balay   MATPRODUCT_AB,
2529371c9d4SSatish Balay   MATPRODUCT_AtB,
2539371c9d4SSatish Balay   MATPRODUCT_ABt,
2549371c9d4SSatish Balay   MATPRODUCT_PtAP,
2559371c9d4SSatish Balay   MATPRODUCT_RARt,
2569371c9d4SSatish Balay   MATPRODUCT_ABC
2579371c9d4SSatish Balay } MatProductType;
258544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[];
2594222ddf1SHong Zhang 
2604222ddf1SHong Zhang /*J
2614222ddf1SHong Zhang     MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation
2624222ddf1SHong Zhang 
2634222ddf1SHong Zhang    Level: beginner
2644222ddf1SHong Zhang 
2651cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType`
2664222ddf1SHong Zhang J*/
2674222ddf1SHong Zhang typedef const char *MatProductAlgorithm;
2683e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT         "default"
2693e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED          "sorted"
2703e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE        "scalable"
2713e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST    "scalable_fast"
2723e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP            "heap"
2733e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP           "btheap"
2743e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED     "llcondensed"
2753e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE        "rowmerge"
2763e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT    "outerproduct"
2773e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB             "at*b"
2783e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP             "rap"
2793e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE     "nonscalable"
2803e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI          "seqmpi"
2813e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND         "backend"
2823e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING     "overlapping"
2833e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED          "merged"
2843e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE       "allatonce"
2853e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged"
2863e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV      "allgatherv"
2873e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC          "cyclic"
2883e662e0bSHong Zhang #define MATPRODUCTALGORITHMHYPRE           "hypre"
2894222ddf1SHong Zhang 
2904222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *);
2914222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat);
2924222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType);
2934222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm);
2948fcac130SJose E. Roman PETSC_EXTERN PetscErrorCode MatProductGetAlgorithm(Mat, MatProductAlgorithm *);
2954222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal);
2964222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat);
2974222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat);
2984222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat);
2994222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat);
3004417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat);
3016718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer);
302c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *);
303c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *);
3044222ddf1SHong Zhang 
305c06d978dSMatthew Knepley /* Logging support */
3060700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */
307014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID;
308335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID;
309014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID;
310014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID;
311014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID;
312014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID;
313014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID;
314014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID;
315c06d978dSMatthew Knepley 
316ceb03754SKris Buschelman /*E
3172ef1f0ffSBarry Smith    MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions
318cf37664fSBarry Smith    are to be reused to store the new matrix values.
319cf37664fSBarry Smith 
3202ef1f0ffSBarry Smith    Values:
3212ef1f0ffSBarry Smith +  `MAT_INITIAL_MATRIX` - create a new matrix
3222ef1f0ffSBarry Smith .  `MAT_REUSE_MATRIX`   - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX`
3232ef1f0ffSBarry Smith .  `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions)
3242ef1f0ffSBarry Smith -  `MAT_IGNORE_MATRIX`  - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions)
325ceb03754SKris Buschelman 
326ceb03754SKris Buschelman     Level: beginner
327ceb03754SKris Buschelman 
3281cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()`
329ceb03754SKris Buschelman E*/
3309371c9d4SSatish Balay typedef enum {
3319371c9d4SSatish Balay   MAT_INITIAL_MATRIX,
3329371c9d4SSatish Balay   MAT_REUSE_MATRIX,
3339371c9d4SSatish Balay   MAT_IGNORE_MATRIX,
3349371c9d4SSatish Balay   MAT_INPLACE_MATRIX
3359371c9d4SSatish Balay } MatReuse;
336ceb03754SKris Buschelman 
3375494a064SHong Zhang /*E
3382ef1f0ffSBarry Smith     MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()`
3392ef1f0ffSBarry Smith     include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`.
3405494a064SHong Zhang 
3412ef1f0ffSBarry Smith     Values:
3422ef1f0ffSBarry Smith +  `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values
3432ef1f0ffSBarry Smith -  `MAT_GET_VALUES`        - copy the matrix values
3442ef1f0ffSBarry Smith 
34595bd0b28SBarry Smith     Level: developer
34695bd0b28SBarry Smith 
3472ef1f0ffSBarry Smith     Developer Note:
3482ef1f0ffSBarry Smith     Why is not just a boolean used for this information?
3492ef1f0ffSBarry Smith 
3501cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()`
3515494a064SHong Zhang E*/
3529371c9d4SSatish Balay typedef enum {
3539371c9d4SSatish Balay   MAT_DO_NOT_GET_VALUES,
3549371c9d4SSatish Balay   MAT_GET_VALUES
3559371c9d4SSatish Balay } MatCreateSubMatrixOption;
3565494a064SHong Zhang 
357607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void);
3584bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatFinalizePackage(void);
359c06d978dSMatthew Knepley 
360014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *);
36177433607SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFromOptions(MPI_Comm, const char *, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
362014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt);
36319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType);
3640d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *);
3650d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType);
366014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat);
367fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]);
368bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat));
36923bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]);
370014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]);
37126cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]);
37226cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]);
373014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]);
374014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]);
3755d5d24bbSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatGetState(Mat, PetscObjectState *);
37684d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool);
377f69a0ea3SMatthew Knepley 
378140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList;
379140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList;
380140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList;
38128988994SBarry Smith 
3823b224e63SBarry Smith /*E
383aa6c7ce3SBarry Smith    MatStructure - Indicates if two matrices have the same nonzero structure
3843b224e63SBarry Smith 
3852ef1f0ffSBarry Smith    Values:
3862ef1f0ffSBarry Smith +  `SAME_NONZERO_PATTERN`      - the two matrices have identical nonzero patterns
3872ef1f0ffSBarry Smith .  `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns
3882ef1f0ffSBarry Smith .  `SUBSET_NONZERO_PATTERN`    - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix
3892ef1f0ffSBarry Smith -  `UNKNOWN_NONZERO_PATTERN`   - there is no known relationship between the nonzero patterns. In this case the implementations
3902ef1f0ffSBarry Smith                                  may try to detect a relationship to optimize the operation
391531d0c6aSBarry Smith 
39216a05f60SBarry Smith    Level: beginner
39316a05f60SBarry Smith 
394af27ebaaSBarry Smith    Note:
395af27ebaaSBarry Smith    Certain matrix operations (such as `MatAXPY()`) can run much faster if the sparsity pattern of the matrices are the same. But actually determining if
396af27ebaaSBarry Smith    the patterns are the same may be costly. This provides a way for users who know something about the sparsity patterns to provide this information
397af27ebaaSBarry Smith    to certain PETSc routines.
398af27ebaaSBarry Smith 
3991cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()`
4003b224e63SBarry Smith E*/
4019371c9d4SSatish Balay typedef enum {
4029371c9d4SSatish Balay   DIFFERENT_NONZERO_PATTERN,
4039371c9d4SSatish Balay   SUBSET_NONZERO_PATTERN,
4049371c9d4SSatish Balay   SAME_NONZERO_PATTERN,
4059371c9d4SSatish Balay   UNKNOWN_NONZERO_PATTERN
4069371c9d4SSatish Balay } MatStructure;
407d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[];
4083b224e63SBarry Smith 
4099779e05dSSatish Balay #if defined PETSC_HAVE_MKL_SPARSE
410ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
411ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
41280095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
413ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
41480095d54SIrina Sokolova #endif
415cd929ea3SAlp Dener 
4164bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
4174bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
4184bf303faSJacob Faibussowitsch 
419d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
420d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
421d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]);
422d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
42307e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *);
42407e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *);
42507e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *);
42607e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt);
427b921024eSHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *);
42880095d54SIrina Sokolova 
4294bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
4304bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
431fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
432fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetSeqSELL(Mat, Mat *, Mat *, const PetscInt *[]);
4334bf303faSJacob Faibussowitsch 
434014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
435014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
436014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
437014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
438014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4398f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4406a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]);
441014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *);
4423b00a383SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *);
4433b00a383SHong Zhang 
444014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
445014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
446014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4477e8381f9SStefano Zampini 
448e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]);
44982a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]);
4507e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode);
451d21a29f3SJed Brown 
452014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *);
453014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
454d21a29f3SJed Brown 
455014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
456014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
45738f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
458014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4594cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]);
460dfb205c3SBarry Smith 
461014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *);
462c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *);
463014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *);
464c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *);
465986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *);
466267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *);
467bcf2175cSMatthew Knepley PETSC_EXTERN PetscErrorCode MatLRCSetMats(Mat, Mat, Mat, Vec, Mat);
468c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *);
469014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
470014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
471c0cdd4a1SDahai Guo 
472014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *);
473014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter);
474014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *);
475014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *);
476014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat);
477014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat);
4789371c9d4SSatish Balay typedef enum {
4799371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_RIGHT,
4809371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_LEFT
4819371c9d4SSatish Balay } MatCompositeMergeType;
4828c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType);
483014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *);
4840da935d5SPierre Jolivet /*E
4850da935d5SPierre Jolivet     MatCompositeType - indicates what type of `MATCOMPOSITE` is used
4860da935d5SPierre Jolivet 
4870da935d5SPierre Jolivet     Values:
4880da935d5SPierre Jolivet +  `MAT_COMPOSITE_ADDITIVE`       - sum of matrices (default)
4890da935d5SPierre Jolivet -  `MAT_COMPOSITE_MULTIPLICATIVE` - product of matrices
4900da935d5SPierre Jolivet 
4910da935d5SPierre Jolivet     Level: beginner
4920da935d5SPierre Jolivet 
4930da935d5SPierre Jolivet .seealso: [](ch_matrices), `MATCOMPOSITE`, `MatCompositeSetType()`, `MatCompositeGetType()`
4940da935d5SPierre Jolivet E*/
4959371c9d4SSatish Balay typedef enum {
4969371c9d4SSatish Balay   MAT_COMPOSITE_ADDITIVE,
4979371c9d4SSatish Balay   MAT_COMPOSITE_MULTIPLICATIVE
4989371c9d4SSatish Balay } MatCompositeType;
499014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType);
5006dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *);
5013b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure);
5023b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *);
5036d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *);
5048b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *);
50503049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *);
5066d7c1e57SBarry Smith 
50719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *);
508014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *);
509dedccee8SHong Zhang 
510014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *);
5118060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *);
512d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *);
51306511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *);
514fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *);
51565f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *);
51654e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *);
51754e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS);
518014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *);
5193423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *);
520345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatCreateDiagonal(Vec, Mat *);
521345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetDiagonal(Mat, Vec *);
522345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreDiagonal(Mat, Vec *);
523345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetInverseDiagonal(Mat, Vec *);
524345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreInverseDiagonal(Mat, Vec *);
5251472f72bSBarry Smith 
526978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE)
527d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
528978814f1SStefano Zampini #endif
529978814f1SStefano Zampini 
530014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]);
531ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]);
532cc4c1da9SBarry Smith PETSC_EXTERN PetscErrorCode MatPythonCreate(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const char[], Mat *);
5331d6018f0SLisandro Dalcin 
534846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat);
535014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat);
536014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *);
537e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *);
53821c89e3eSBarry Smith 
539014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat);
540014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat);
541014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat);
542014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *);
543014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *);
544713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **);
5450da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *);
546479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat);
5478a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *);
54820c04d79SPierre Jolivet PETSC_EXTERN PetscErrorCode MatComputeVariableBlockEnvelope(Mat);
54999cafbc1SBarry Smith 
550014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
5518a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode);
552014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
553014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]);
554014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]);
555014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]);
55673a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom);
55784cb2905SBarry Smith 
5582ef4de8bSBarry Smith /*S
5592ef1f0ffSBarry Smith    MatStencil - Data structure (C struct) for storing information about rows and
5602ef1f0ffSBarry Smith    columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()`
56162ef0227SBarry Smith 
5622ef1f0ffSBarry Smith    Level: beginner
5632ef1f0ffSBarry Smith 
5642ef1f0ffSBarry Smith    Notes:
56562ef0227SBarry Smith    The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored).
56615229ffcSPierre Jolivet    The c represents the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored.
56762ef0227SBarry Smith 
56887497f52SBarry Smith    For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`.
569be479b30SJed Brown 
5702ef1f0ffSBarry Smith    For staggered grids, see `DMStagStencil`
5712ef4de8bSBarry Smith 
5722ef1f0ffSBarry Smith    Fortran Note:
5732ef1f0ffSBarry Smith    See `MatSetValuesStencil()` for details.
5742ef4de8bSBarry Smith 
5751cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`,
5762ef1f0ffSBarry Smith           `DMStagStencil`
5772ef4de8bSBarry Smith S*/
578435da068SBarry Smith typedef struct {
579c1ac3661SBarry Smith   PetscInt k, j, i, c;
580435da068SBarry Smith } MatStencil;
5812ef4de8bSBarry Smith 
582014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
583014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
584014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt);
585435da068SBarry Smith 
586d91e6319SBarry Smith /*E
5872ef1f0ffSBarry Smith     MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use
588d91e6319SBarry Smith 
5892ef1f0ffSBarry Smith     Values:
5902ef1f0ffSBarry Smith +   `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix
5912ef1f0ffSBarry Smith -   `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted
5922ef1f0ffSBarry Smith 
59316a05f60SBarry Smith     Level: beginner
59416a05f60SBarry Smith 
5951cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()`
596d91e6319SBarry Smith E*/
5979371c9d4SSatish Balay typedef enum {
5989371c9d4SSatish Balay   MAT_FLUSH_ASSEMBLY = 1,
5999371c9d4SSatish Balay   MAT_FINAL_ASSEMBLY = 0
6009371c9d4SSatish Balay } MatAssemblyType;
6014f58015eSStefano Zampini 
602014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType);
603014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType);
604014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *);
6054f9c727eSBarry Smith 
606d91e6319SBarry Smith /*E
6072ef1f0ffSBarry Smith    MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage
608d91e6319SBarry Smith 
609d91e6319SBarry Smith    Level: beginner
610d91e6319SBarry Smith 
6112ef1f0ffSBarry Smith    Note:
6122ef1f0ffSBarry Smith    See `MatSetOption()` for the use of the options
6132ef1f0ffSBarry Smith 
6142ef1f0ffSBarry Smith    Developer Note:
61595452b02SPatrick Sanan    Entries that are negative need not be called collectively by all processes.
616382164b0SBarry Smith 
6171cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetOption()`
618d91e6319SBarry Smith E*/
6199371c9d4SSatish Balay typedef enum {
6209371c9d4SSatish Balay   MAT_OPTION_MIN                  = -3,
621c5e4d11fSDmitry Karpeev   MAT_UNUSED_NONZERO_LOCATION_ERR = -2,
62292d4d306SBarry Smith   MAT_ROW_ORIENTED                = -1,
623382164b0SBarry Smith   MAT_SYMMETRIC                   = 1,
624382164b0SBarry Smith   MAT_STRUCTURALLY_SYMMETRIC      = 2,
6258c78258cSHong Zhang   MAT_FORCE_DIAGONAL_ENTRIES      = 3,
626382164b0SBarry Smith   MAT_IGNORE_OFF_PROC_ENTRIES     = 4,
627382164b0SBarry Smith   MAT_USE_HASH_TABLE              = 5,
628382164b0SBarry Smith   MAT_KEEP_NONZERO_PATTERN        = 6,
629382164b0SBarry Smith   MAT_IGNORE_ZERO_ENTRIES         = 7,
630382164b0SBarry Smith   MAT_USE_INODES                  = 8,
631382164b0SBarry Smith   MAT_HERMITIAN                   = 9,
632382164b0SBarry Smith   MAT_SYMMETRY_ETERNAL            = 10,
633c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_LOCATION_ERR    = 11,
634382164b0SBarry Smith   MAT_IGNORE_LOWER_TRIANGULAR     = 12,
635382164b0SBarry Smith   MAT_ERROR_LOWER_TRIANGULAR      = 13,
636382164b0SBarry Smith   MAT_GETROW_UPPERTRIANGULAR      = 14,
637382164b0SBarry Smith   MAT_SPD                         = 15,
63892d4d306SBarry Smith   MAT_NO_OFF_PROC_ZERO_ROWS       = 16,
63992d4d306SBarry Smith   MAT_NO_OFF_PROC_ENTRIES         = 17,
64092d4d306SBarry Smith   MAT_NEW_NONZERO_LOCATIONS       = 18,
641c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_ALLOCATION_ERR  = 19,
642c5e4d11fSDmitry Karpeev   MAT_SUBSET_OFF_PROC_ENTRIES     = 20,
643c10200c1SHong Zhang   MAT_SUBMAT_SINGLEIS             = 21,
644957cac9fSHong Zhang   MAT_STRUCTURE_ONLY              = 22,
645071fcb05SBarry Smith   MAT_SORTED_FULL                 = 23,
6461a2c6b5cSJunchao Zhang   MAT_FORM_EXPLICIT_TRANSPOSE     = 24,
647b94d7dedSBarry Smith   MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25,
648b94d7dedSBarry Smith   MAT_SPD_ETERNAL                 = 26,
6499371c9d4SSatish Balay   MAT_OPTION_MAX                  = 27
6509371c9d4SSatish Balay } MatOption;
651e057df02SPaul Mullowney 
6520f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions;
653014dd563SJed Brown PETSC_EXTERN PetscErrorCode     MatSetOption(Mat, MatOption, PetscBool);
6547d68702bSBarry Smith PETSC_EXTERN PetscErrorCode     MatGetOption(Mat, MatOption, PetscBool *);
655856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode     MatPropagateSymmetryOptions(Mat, Mat);
65619fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode     MatGetType(Mat, MatType *);
65784cb2905SBarry Smith 
658014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
659014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
660014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
661014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRowUpperTriangular(Mat);
662014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRowUpperTriangular(Mat);
663014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetColumnVector(Mat, Vec, PetscInt);
6648c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArray(Mat, PetscScalar *[]);
6658f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]);
666d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]);
6678c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArray(Mat, PetscScalar *[]);
6688f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]);
669d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]);
67021e72a00SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *);
671bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
6724099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetType(Mat, MatType);
673ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode    MatSeqAIJKron(Mat, Mat, MatReuse, Mat *);
674388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode    MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *));
6754099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList;
676cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJGetArray(Mat, PetscScalar *[]);
677cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJRestoreArray(Mat, PetscScalar *[]);
6788397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJGetArray(Mat, PetscScalar *[]);
6798397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]);
6808c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArray(Mat, PetscScalar *[]);
6818c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArray(Mat, PetscScalar *[]);
682d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDensePlaceArray(Mat, const PetscScalar[]);
683d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseReplaceArray(Mat, const PetscScalar[]);
684d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseResetArray(Mat);
6858572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArrayRead(Mat, const PetscScalar *[]);
6868572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayRead(Mat, const PetscScalar *[]);
6876947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWrite(Mat, PetscScalar *[]);
6886947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWrite(Mat, PetscScalar *[]);
689cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *);
690cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]);
691cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *);
692cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]);
693cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *);
694cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]);
695014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSize(Mat, PetscInt *);
696014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSize(Mat, PetscInt);
697014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSizes(Mat, PetscInt *, PetscInt *);
698014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizes(Mat, PetscInt, PetscInt);
69933d57670SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizesFromMats(Mat, Mat, Mat);
7006e25ca73SStefano Zampini PETSC_EXTERN PetscErrorCode    MatSetVariableBlockSizes(Mat, PetscInt, const PetscInt[]);
7016e25ca73SStefano Zampini PETSC_EXTERN PetscErrorCode    MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt *[]);
7020da83c2eSBarry Smith 
70386aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]);
70486aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]);
7056947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *);
7066947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *);
7076947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *);
7086947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *);
7096947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *);
7106947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *);
711a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
7125ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *);
7131620fd73SBarry Smith 
714014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec);
715014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec);
716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec);
717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec);
718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec);
719014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *);
720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *);
721014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec);
722014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec);
723014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat);
724bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat);
725eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat);
726f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec);
727f5edf698SHong Zhang 
728d91e6319SBarry Smith /*E
729d91e6319SBarry Smith   MatDuplicateOption - Indicates if a duplicated sparse matrix should have
730d91e6319SBarry Smith   its numerical values copied over or just its nonzero structure.
731d91e6319SBarry Smith 
7322ef1f0ffSBarry Smith   Values:
7332ef1f0ffSBarry Smith + `MAT_DO_NOT_COPY_VALUES`    - Create a matrix using the same nonzero pattern as the original matrix,
7342ef1f0ffSBarry Smith                                 with zeros for the numerical values
7352ef1f0ffSBarry Smith . `MAT_COPY_VALUES`           - Create a matrix with the same nonzero pattern as the original matrix
7362ef1f0ffSBarry Smith                                 and with the same numerical values.
7372ef1f0ffSBarry Smith - `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix
7382ef1f0ffSBarry Smith                                 and does not copy it, using zeros for the numerical values. The parent and
7392ef1f0ffSBarry Smith                                 child matrices will share their index (i and j) arrays, and you cannot
7402ef1f0ffSBarry Smith                                 insert new nonzero entries into either matrix
7410018da39SRichard Tran Mills 
74216a05f60SBarry Smith   Level: beginner
74316a05f60SBarry Smith 
74487497f52SBarry Smith   Note:
74587497f52SBarry Smith   Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in
74687497f52SBarry Smith   this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified.
74770dcbbb9SBarry Smith 
7481cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicate()`
749d91e6319SBarry Smith E*/
7509371c9d4SSatish Balay typedef enum {
7519371c9d4SSatish Balay   MAT_DO_NOT_COPY_VALUES,
7529371c9d4SSatish Balay   MAT_COPY_VALUES,
7539371c9d4SSatish Balay   MAT_SHARE_NONZERO_PATTERN
7549371c9d4SSatish Balay } MatDuplicateOption;
7552e8a6d31SBarry Smith 
75619fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *);
757014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *);
75894a9d846SBarry Smith 
759014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure);
760014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer);
761014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *);
762014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *);
763014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *);
764014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *);
765014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *);
766b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *);
767b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *);
768014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *);
769014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer);
7707b80b807SBarry Smith 
7711a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7721a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7731a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7741a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
775d4fbbf0eSBarry Smith 
776d91e6319SBarry Smith /*S
77787497f52SBarry Smith    MatInfo - Context of matrix information, used with `MatGetInfo()`
778d91e6319SBarry Smith 
779d91e6319SBarry Smith    Level: intermediate
780d91e6319SBarry Smith 
7812ef1f0ffSBarry Smith    Fortran Note:
7822ef1f0ffSBarry Smith    Information is stored as a double-precision array of dimension `MAT_INFO_SIZE`
7832ef1f0ffSBarry Smith 
7841cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetInfo()`, `MatInfoType`
785d91e6319SBarry Smith S*/
7864e220ebcSLois Curfman McInnes typedef struct {
787b0a32e0cSBarry Smith   PetscLogDouble block_size;                          /* block size */
788b0a32e0cSBarry Smith   PetscLogDouble nz_allocated, nz_used, nz_unneeded;  /* number of nonzeros */
789b0a32e0cSBarry Smith   PetscLogDouble memory;                              /* memory allocated */
790b0a32e0cSBarry Smith   PetscLogDouble assemblies;                          /* number of matrix assemblies called */
791b0a32e0cSBarry Smith   PetscLogDouble mallocs;                             /* number of mallocs during MatSetValues() */
792b0a32e0cSBarry Smith   PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */
793b0a32e0cSBarry Smith   PetscLogDouble factor_mallocs;                      /* number of mallocs during factorization */
7944e220ebcSLois Curfman McInnes } MatInfo;
7954e220ebcSLois Curfman McInnes 
796d9274352SBarry Smith /*E
797d9274352SBarry Smith     MatInfoType - Indicates if you want information about the local part of the matrix,
798d9274352SBarry Smith     the entire parallel matrix or the maximum over all the local parts.
799d9274352SBarry Smith 
8002ef1f0ffSBarry Smith     Values:
8012ef1f0ffSBarry Smith +   `MAT_LOCAL`      - values for each MPI process part of the matrix
8022ef1f0ffSBarry Smith .   `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes
8032ef1f0ffSBarry Smith -   `MAT_GLOBAL_SUM` - sum of each value over all MPI processes
804d9274352SBarry Smith 
80516a05f60SBarry Smith     Level: beginner
80616a05f60SBarry Smith 
8071cc06b55SBarry Smith .seealso: [](ch_matrices), `MatGetInfo()`, `MatInfo`
808d9274352SBarry Smith E*/
8099371c9d4SSatish Balay typedef enum {
8109371c9d4SSatish Balay   MAT_LOCAL      = 1,
8119371c9d4SSatish Balay   MAT_GLOBAL_MAX = 2,
8129371c9d4SSatish Balay   MAT_GLOBAL_SUM = 3
8139371c9d4SSatish Balay } MatInfoType;
814014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *);
815014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec);
816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]);
817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]);
818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]);
819eede4a3fSMark Adams PETSC_EXTERN PetscErrorCode MatGetRowSumAbs(Mat, Vec);
820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]);
821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec);
822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *);
8237fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *);
8247fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat);
825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *);
826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *);
827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec);
828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode);
829a52676ecSHong Zhang 
830014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *);
831014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *);
832014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *);
833014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
834014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
835e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
836e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
837a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
838a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
839cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
8404222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
841447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
84286919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *);
8437b80b807SBarry Smith 
844014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *);
845014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *);
846857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *);
847857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *);
848857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *);
849857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *);
850857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *);
851857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *);
852857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *);
853014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat);
8541b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat);
855014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
856014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec);
857014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
858014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
859014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
860014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec);
8617b80b807SBarry Smith 
862014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *);
863014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *);
864014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *);
865014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **);
866014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *);
867014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **);
868566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *);
8695ef9f2a5SBarry Smith 
8707dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
871edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrices()", ) static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
872d71ae5a4SJacob Faibussowitsch {
8739371c9d4SSatish Balay   return MatCreateSubMatrices(mat, n, irow, icol, scall, submat);
8749371c9d4SSatish Balay }
8757dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
876edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatricesMPI()", ) static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
877d71ae5a4SJacob Faibussowitsch {
8789371c9d4SSatish Balay   return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat);
8799371c9d4SSatish Balay }
880014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]);
881df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]);
8827dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *);
883edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrix()", ) static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat)
884d71ae5a4SJacob Faibussowitsch {
8859371c9d4SSatish Balay   return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat);
8869371c9d4SSatish Balay }
887014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *);
888014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *);
889014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *);
890014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *);
8917b80b807SBarry Smith 
892014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *);
893014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *);
894014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat);
895014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *);
8968a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *);
897014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
898ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *);
899f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *);
900014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *);
901014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]);
9028efafbd8SBarry Smith 
903014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt);
904aa1e27eaSFande Kong PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov);
905d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool);
9067b80b807SBarry Smith 
907014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
90822440eb1SKris Buschelman 
9097bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
9102df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
9117bab7c10SHong Zhang 
912014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *);
913014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *);
91422440eb1SKris Buschelman 
915014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
916014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *);
917bc011b1eSHong Zhang 
918014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure);
919014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure);
9201c741599SHong Zhang 
921014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar);
922014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar);
9237b80b807SBarry Smith 
924014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping);
925014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
926a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *);
92781fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout);
928014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
929014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
930014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
931014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
932e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
933014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
934014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
935052efed2SBarry Smith 
936014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt);
937014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *);
93890f02eecSBarry Smith 
939014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec);
940014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec);
941014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec);
94230b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *);
94330b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *);
94430b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *);
9452a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *);
946edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 6, 0, "MatCreateVecs()", ) static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y)
947d71ae5a4SJacob Faibussowitsch {
9489371c9d4SSatish Balay   return MatCreateVecs(mat, x, y);
9499371c9d4SSatish Balay }
95053cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *);
951014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *);
952014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *);
9533a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *);
9549c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *);
955bd481603SBarry Smith 
956c8d6c325SJunchao Zhang /*@C
9571620fd73SBarry Smith    MatSetValue - Set a single entry into a matrix.
9581620fd73SBarry Smith 
959e1c5b2e2SJose E. Roman    Not Collective
960a9834a7dSSatish Balay 
9611620fd73SBarry Smith    Input Parameters:
962c8d6c325SJunchao Zhang +  mat  - the matrix
96316a05f60SBarry Smith .  i    - the row location of the entry
96416a05f60SBarry Smith .  j    - the column location of the entry
96516a05f60SBarry Smith .  va   - the value to insert
96687497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
9671620fd73SBarry Smith 
9681620fd73SBarry Smith    Level: beginner
9691620fd73SBarry Smith 
97095bd0b28SBarry Smith    Notes:
97195bd0b28SBarry Smith    This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()`
97295bd0b28SBarry Smith    MUST be called after all calls to `MatSetValue()` have been completed.
97395bd0b28SBarry Smith 
9742ef1f0ffSBarry Smith    For efficiency one should use `MatSetValues()` and set several values simultaneously.
9752ef1f0ffSBarry Smith 
976b43fc34aSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `InsertMode`, `MatGetValue()`, `MatSetValues()`,
9772ef1f0ffSBarry Smith           `MatSetValueLocal()`, `MatSetValuesLocal()`
978c8d6c325SJunchao Zhang @*/
979c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValue(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
980d71ae5a4SJacob Faibussowitsch {
981c8d6c325SJunchao Zhang   return MatSetValues(mat, 1, &i, 1, &j, &va, mode);
9829371c9d4SSatish Balay }
9831620fd73SBarry Smith 
984e5e5a7b5SPatrick Sanan /*@C
985e5e5a7b5SPatrick Sanan    MatGetValue - Gets a single value from a matrix
9861620fd73SBarry Smith 
987e5e5a7b5SPatrick Sanan    Not Collective; can only return a value owned by the given process
988e5e5a7b5SPatrick Sanan 
989e5e5a7b5SPatrick Sanan    Input Parameters:
990e5e5a7b5SPatrick Sanan +  mat - the matrix
991e5e5a7b5SPatrick Sanan .  row - the row location of the entry
992e5e5a7b5SPatrick Sanan -  col - the column location of the entry
993e5e5a7b5SPatrick Sanan 
994e5e5a7b5SPatrick Sanan    Output Parameter:
995e5e5a7b5SPatrick Sanan .  va - the value
996e5e5a7b5SPatrick Sanan 
9972ef1f0ffSBarry Smith    Level: advanced
9982ef1f0ffSBarry Smith 
999e5e5a7b5SPatrick Sanan    Notes:
1000b43fc34aSPierre Jolivet    The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd()` before this call
10012ef1f0ffSBarry Smith 
100287497f52SBarry Smith    For efficiency one should use `MatGetValues()` and get several values simultaneously.
1003e5e5a7b5SPatrick Sanan 
100487497f52SBarry Smith    See notes for `MatGetValues()`.
1005e5e5a7b5SPatrick Sanan 
1006b43fc34aSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()`
1007e5e5a7b5SPatrick Sanan @*/
1008d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va)
1009d71ae5a4SJacob Faibussowitsch {
10109371c9d4SSatish Balay   return MatGetValues(mat, 1, &row, 1, &col, va);
10119371c9d4SSatish Balay }
1012e5e5a7b5SPatrick Sanan 
1013c8d6c325SJunchao Zhang /*@C
10142ef1f0ffSBarry Smith    MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes.
1015e5e5a7b5SPatrick Sanan 
1016e5e5a7b5SPatrick Sanan    Not Collective
1017e5e5a7b5SPatrick Sanan 
1018e5e5a7b5SPatrick Sanan    Input Parameters:
1019c8d6c325SJunchao Zhang +  mat  - the matrix
102016a05f60SBarry Smith .  i    - the row location of the entry
102116a05f60SBarry Smith .  j    - the column location of the entry
102216a05f60SBarry Smith .  va   - the value to insert
102387497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
1024e5e5a7b5SPatrick Sanan 
10252ef1f0ffSBarry Smith    Level: intermediate
10262ef1f0ffSBarry Smith 
1027e5e5a7b5SPatrick Sanan    Notes:
102887497f52SBarry Smith    For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously.
1029e5e5a7b5SPatrick Sanan 
103087497f52SBarry Smith    See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used.
1031e5e5a7b5SPatrick Sanan 
10321cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSetValue()`, `MatSetValuesLocal()`
1033c8d6c325SJunchao Zhang @*/
1034c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValueLocal(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
1035d71ae5a4SJacob Faibussowitsch {
1036c8d6c325SJunchao Zhang   return MatSetValuesLocal(mat, 1, &i, 1, &j, &va, mode);
10379371c9d4SSatish Balay }
10381620fd73SBarry Smith 
10391620fd73SBarry Smith /*MC
1040d0609cedSBarry Smith    MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per
1041bd481603SBarry Smith    row in a matrix providing the data that one can use to correctly preallocate the matrix.
1042bd481603SBarry Smith 
1043bd481603SBarry Smith    Synopsis:
1044aaa7dc30SBarry Smith    #include <petscmat.h>
1045d0609cedSBarry Smith    PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz)
1046bd481603SBarry Smith 
1047d083f849SBarry Smith    Collective
1048bd481603SBarry Smith 
1049bd481603SBarry Smith    Input Parameters:
1050bd481603SBarry Smith +  comm  - the communicator that will share the eventually allocated matrix
1051859fcb39SBarry Smith .  nrows - the number of LOCAL rows in the matrix
1052859fcb39SBarry Smith -  ncols - the number of LOCAL columns in the matrix
1053bd481603SBarry Smith 
1054bd481603SBarry Smith    Output Parameters:
1055bd481603SBarry Smith +  dnz - the array that will be passed to the matrix preallocation routines
1056a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1057bd481603SBarry Smith 
10582ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1059bd481603SBarry Smith 
1060bd481603SBarry Smith    Notes:
10612ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
10622ef1f0ffSBarry Smith    the use of this routine
10632ef1f0ffSBarry Smith 
1064d0609cedSBarry Smith    This is a macro that handles its own error checking, it does not return an error code.
1065d0609cedSBarry Smith 
10662ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1067bd481603SBarry Smith 
10682ef1f0ffSBarry Smith    Developer Note:
1069af27ebaaSBarry Smith    This is a MACRO, not a function, because it has a leading { that is closed by `PetscPreallocateFinalize()`.
1070bd481603SBarry Smith 
10711cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1072db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1073bd481603SBarry Smith M*/
10749371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \
10759371c9d4SSatish Balay   do { \
10763ba16761SJacob Faibussowitsch     PetscInt              __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \
10773ba16761SJacob Faibussowitsch     PetscInt PETSC_UNUSED __start; \
10789566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \
10799566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \
10809371c9d4SSatish Balay     __start = __end - __ncols; \
10819371c9d4SSatish Balay     (void)__start; \
10829566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \
10835f80ce2aSJacob Faibussowitsch   __rstart -= __nrows
10847c922b88SBarry Smith 
1085edd03b47SJacob Faibussowitsch #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateBegin()", ) MatPreallocateBegin(__VA_ARGS__)
1086d0609cedSBarry Smith 
1087bd481603SBarry Smith /*MC
1088bd481603SBarry Smith    MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1089bd481603SBarry Smith    inserted using a local number of the rows and columns
1090bd481603SBarry Smith 
1091bd481603SBarry Smith    Synopsis:
1092aaa7dc30SBarry Smith    #include <petscmat.h>
1093c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1094bd481603SBarry Smith 
1095bd481603SBarry Smith    Not Collective
1096bd481603SBarry Smith 
1097bd481603SBarry Smith    Input Parameters:
1098784ac674SJed Brown +  map   - the row mapping from local numbering to global numbering
1099bd481603SBarry Smith .  nrows - the number of rows indicated
11001d73ed98SBarry Smith .  rows  - the indices of the rows
1101784ac674SJed Brown .  cmap  - the column mapping from local to global numbering
1102bd481603SBarry Smith .  ncols - the number of columns in the matrix
1103bd481603SBarry Smith .  cols  - the columns indicated
1104bd481603SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1105a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1106bd481603SBarry Smith 
11072ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1108bd481603SBarry Smith 
1109bd481603SBarry Smith    Notes:
11102ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11112ef1f0ffSBarry Smith    the use of this routine
1112bd481603SBarry Smith 
11132ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1114bd481603SBarry Smith 
11151cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1116db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()`
1117bd481603SBarry Smith M*/
111894bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11199371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1120c4f061fbSSatish Balay 
1121bd481603SBarry Smith /*MC
1122c1154cd5SBarry Smith    MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1123c1154cd5SBarry Smith    inserted using a local number of the rows and columns. This version removes any duplicate columns in cols
1124c1154cd5SBarry Smith 
1125c1154cd5SBarry Smith    Synopsis:
1126c1154cd5SBarry Smith    #include <petscmat.h>
1127c1154cd5SBarry Smith    PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1128c1154cd5SBarry Smith 
1129c1154cd5SBarry Smith    Not Collective
1130c1154cd5SBarry Smith 
1131c1154cd5SBarry Smith    Input Parameters:
1132c1154cd5SBarry Smith +  map   - the row mapping from local numbering to global numbering
1133c1154cd5SBarry Smith .  nrows - the number of rows indicated
1134c1154cd5SBarry Smith .  rows  - the indices of the rows (these values are mapped to the global values)
1135c1154cd5SBarry Smith .  cmap  - the column mapping from local to global numbering
1136c1154cd5SBarry Smith .  ncols - the number of columns in the matrix   (this value will be changed if duplicate columns are found)
1137c1154cd5SBarry Smith .  cols  - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed)
1138c1154cd5SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1139a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1140c1154cd5SBarry Smith 
11412ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1142c1154cd5SBarry Smith 
1143c1154cd5SBarry Smith    Notes:
11442ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11452ef1f0ffSBarry Smith    the use of this routine
1146c1154cd5SBarry Smith 
11472ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1148c1154cd5SBarry Smith 
11491cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1150db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1151c1154cd5SBarry Smith M*/
115294bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11539371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1154c1154cd5SBarry Smith 
1155c1154cd5SBarry Smith /*MC
1156d6e23781SBarry Smith    MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1157bd481603SBarry Smith    inserted using a local number of the rows and columns
1158bd481603SBarry Smith 
1159bd481603SBarry Smith    Synopsis:
1160aaa7dc30SBarry Smith    #include <petscmat.h>
1161d6e23781SBarry Smith    PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1162d6e23781SBarry Smith 
1163d6e23781SBarry Smith    Not Collective
1164d6e23781SBarry Smith 
1165d6e23781SBarry Smith    Input Parameters:
1166d6e23781SBarry Smith +  map   - the row mapping from local numbering to global numbering
1167d6e23781SBarry Smith .  nrows - the number of rows indicated
1168d6e23781SBarry Smith .  rows  - the indices of the rows
1169d6e23781SBarry Smith .  cmap  - the column mapping from local to global numbering
1170d6e23781SBarry Smith .  ncols - the number of columns in the matrix
1171d6e23781SBarry Smith .  cols  - the columns indicated
1172d6e23781SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1173a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1174d6e23781SBarry Smith 
11752ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1176d6e23781SBarry Smith 
1177d6e23781SBarry Smith    Notes:
11782ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11792ef1f0ffSBarry Smith    the use of this routine
1180d6e23781SBarry Smith 
11812ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1182d6e23781SBarry Smith 
11831cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1184db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`
1185d6e23781SBarry Smith M*/
118694bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11879371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1188d6e23781SBarry Smith 
1189d6e23781SBarry Smith /*MC
1190d6e23781SBarry Smith    MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1191d6e23781SBarry Smith    inserted using a local number of the rows and columns
1192d6e23781SBarry Smith 
1193d6e23781SBarry Smith    Synopsis:
1194d6e23781SBarry Smith    #include <petscmat.h>
1195d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1196bd481603SBarry Smith 
1197bd481603SBarry Smith    Not Collective
1198bd481603SBarry Smith 
1199bd481603SBarry Smith    Input Parameters:
1200bd481603SBarry Smith +  map   - the mapping between local numbering and global numbering
1201bd481603SBarry Smith .  nrows - the number of rows indicated
12021d73ed98SBarry Smith .  rows  - the indices of the rows
1203bd481603SBarry Smith .  ncols - the number of columns in the matrix
1204bd481603SBarry Smith .  cols  - the columns indicated
1205bd481603SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1206a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1207bd481603SBarry Smith 
12082ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1209bd481603SBarry Smith 
1210bd481603SBarry Smith    Notes:
12112ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12122ef1f0ffSBarry Smith    the use of this routine
1213bd481603SBarry Smith 
12142ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1215bd481603SBarry Smith 
12161cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`
1217db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1218bd481603SBarry Smith M*/
121994bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \
12209371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));)
1221e83a5d19SLisandro Dalcin 
1222bd481603SBarry Smith /*MC
1223bd481603SBarry Smith    MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1224bd481603SBarry Smith    inserted using a local number of the rows and columns
1225bd481603SBarry Smith 
1226bd481603SBarry Smith    Synopsis:
1227aaa7dc30SBarry Smith    #include <petscmat.h>
1228c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1229bd481603SBarry Smith 
1230bd481603SBarry Smith    Not Collective
1231bd481603SBarry Smith 
1232bd481603SBarry Smith    Input Parameters:
123364075487SBarry Smith +  row   - the row
1234bd481603SBarry Smith .  ncols - the number of columns in the matrix
1235a50f8bf6SHong Zhang -  cols  - the columns indicated
1236a50f8bf6SHong Zhang 
1237a50f8bf6SHong Zhang    Output Parameters:
1238a50f8bf6SHong Zhang +  dnz - the array that will be passed to the matrix preallocation routines
1239a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1240bd481603SBarry Smith 
12412ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1242bd481603SBarry Smith 
1243bd481603SBarry Smith    Notes:
12442ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12452ef1f0ffSBarry Smith    the use of this routine
1246bd481603SBarry Smith 
12472ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1248bd481603SBarry Smith 
1249af27ebaaSBarry Smith    This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin().
12501620fd73SBarry Smith 
12511cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1252db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1253bd481603SBarry Smith M*/
12549371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \
12559371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \
125664075487SBarry Smith     if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \
1257a6042fd4SStefano Zampini     else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12589371c9d4SSatish Balay   })
12597c922b88SBarry Smith 
1260bd481603SBarry Smith /*MC
1261d6e23781SBarry Smith    MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1262bd481603SBarry Smith    inserted using a local number of the rows and columns
1263bd481603SBarry Smith 
1264bd481603SBarry Smith    Synopsis:
1265aaa7dc30SBarry Smith    #include <petscmat.h>
1266d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1267bd481603SBarry Smith 
1268bd481603SBarry Smith    Not Collective
1269bd481603SBarry Smith 
1270bd481603SBarry Smith    Input Parameters:
1271bd481603SBarry Smith +  nrows - the number of rows indicated
12721d73ed98SBarry Smith .  rows  - the indices of the rows
1273bd481603SBarry Smith .  ncols - the number of columns in the matrix
1274bd481603SBarry Smith .  cols  - the columns indicated
1275bd481603SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1276a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1277bd481603SBarry Smith 
12782ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1279bd481603SBarry Smith 
1280bd481603SBarry Smith    Notes:
12812ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12822ef1f0ffSBarry Smith    the use of this routine
1283bd481603SBarry Smith 
12842ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1285bd481603SBarry Smith 
1286af27ebaaSBarry Smith    This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin().
12871620fd73SBarry Smith 
12881cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`,
1289db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1290bd481603SBarry Smith M*/
129194bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \
12929371c9d4SSatish Balay   PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \
1293d3d32019SBarry Smith     if (cols[__i] >= __end) onz[row - __rstart]++; \
1294a6042fd4SStefano Zampini     else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12959371c9d4SSatish Balay   })
1296d3d32019SBarry Smith 
1297bd481603SBarry Smith /*MC
1298a6042fd4SStefano Zampini    MatPreallocateLocation -  An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists
129916371a99SBarry Smith 
130016371a99SBarry Smith    Synopsis:
1301aaa7dc30SBarry Smith    #include <petscmat.h>
130216371a99SBarry Smith    PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz)
130316371a99SBarry Smith 
130416371a99SBarry Smith    Not Collective
130516371a99SBarry Smith 
130616371a99SBarry Smith    Input Parameters:
1307a2b725a8SWilliam Gropp +  A     - matrix
130816371a99SBarry Smith .  row   - row where values exist (must be local to this process)
130916371a99SBarry Smith .  ncols - number of columns
131016371a99SBarry Smith .  cols  - columns with nonzeros
131116371a99SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1312a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
131316371a99SBarry Smith 
13142ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
131516371a99SBarry Smith 
131616371a99SBarry Smith    Notes:
13172ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
13182ef1f0ffSBarry Smith    the use of this routine
131916371a99SBarry Smith 
13202ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
132116371a99SBarry Smith 
1322af27ebaaSBarry Smith    Developer Note:
1323af27ebaaSBarry Smith    This is a MACRO, not a function, because it uses a bunch of variables private to the MatPreallocation.... routines.
132416371a99SBarry Smith 
13251cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1326db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
132716371a99SBarry Smith M*/
1328d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz))
132916371a99SBarry Smith 
133016371a99SBarry Smith /*MC
1331d0609cedSBarry Smith    MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per
1332bd481603SBarry Smith    row in a matrix providing the data that one can use to correctly preallocate the matrix.
1333bd481603SBarry Smith 
1334bd481603SBarry Smith    Synopsis:
1335aaa7dc30SBarry Smith    #include <petscmat.h>
1336d0609cedSBarry Smith    PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz)
1337bd481603SBarry Smith 
1338d083f849SBarry Smith    Collective
1339bd481603SBarry Smith 
1340bd481603SBarry Smith    Input Parameters:
134116371a99SBarry Smith +  dnz - the array that was be passed to the matrix preallocation routines
1342a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1343bd481603SBarry Smith 
13442ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1345bd481603SBarry Smith 
1346bd481603SBarry Smith    Notes:
13472ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
13482ef1f0ffSBarry Smith    the use of this routine
1349d0609cedSBarry Smith 
13502ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1351bd481603SBarry Smith 
13522ef1f0ffSBarry Smith    Developer Note:
1353af27ebaaSBarry Smith    This is a MACRO, not a function, because it closes the { started in MatPreallocateBegin().
13541620fd73SBarry Smith 
13551cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1356db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1357bd481603SBarry Smith M*/
13589371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \
13599371c9d4SSatish Balay   PetscCall(PetscFree2(dnz, onz)); \
13609371c9d4SSatish Balay   } \
13619371c9d4SSatish Balay   while (0)
1362d0609cedSBarry Smith 
1363edd03b47SJacob Faibussowitsch #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateEnd()", ) MatPreallocateEnd(__VA_ARGS__)
13647c922b88SBarry Smith 
13657b80b807SBarry Smith /* Routines unique to particular data structures */
1366014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *);
1367698d4c6aSKris Buschelman 
1368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *);
1369014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *);
1370698d4c6aSKris Buschelman 
1371014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]);
1372014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]);
1373014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1374014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1375014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1376014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool);
13777b80b807SBarry Smith 
1378a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4
1379a96a251dSBarry Smith 
1380014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1381014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1382014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]);
138319b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt);
1384273d9f13SBarry Smith 
1385014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1386014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1387014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1388014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1389014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1390014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1391014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1392014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]);
1393b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *);
1394252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *);
1395014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]);
1396014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]);
13979230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
13989230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
1399014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *);
1400273d9f13SBarry Smith 
140149a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *);
1402ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt);
1403edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatDenseSetLDA()", ) static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda)
1404d71ae5a4SJacob Faibussowitsch {
14059371c9d4SSatish Balay   return MatDenseSetLDA(A, lda);
14069371c9d4SSatish Balay }
1407014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *);
14081b807ce4Svictorle 
1409621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1410621e819fSSatish Balay 
1411014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat);
1412014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat);
14132e8a6d31SBarry Smith 
1414014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *);
14157cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *);
14167b80b807SBarry Smith /*
14177b80b807SBarry Smith   These routines are not usually accessed directly, rather solving is
141894b7f48cSBarry Smith   done through the KSP and PC interfaces.
14197b80b807SBarry Smith */
14207b80b807SBarry Smith 
142176bdecfbSBarry Smith /*J
14222ef1f0ffSBarry Smith    MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used
14232ef1f0ffSBarry Smith    to reduce fill in sparse factorizations.
1424d9274352SBarry Smith 
1425d9274352SBarry Smith    Level: beginner
1426d9274352SBarry Smith 
14272c7c0729SBarry Smith    Notes:
142816a05f60SBarry Smith    If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one
142916a05f60SBarry Smith    of its own.
14302c7c0729SBarry Smith 
14312ef1f0ffSBarry Smith    There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()`
14322ef1f0ffSBarry Smith 
14332ef1f0ffSBarry Smith    Developer Note:
14342ef1f0ffSBarry Smith    This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning`
14352ef1f0ffSBarry Smith 
14361cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`,
14372ef1f0ffSBarry Smith           `PCFactorSetOrderingType()`
143876bdecfbSBarry Smith J*/
143919fd82e9SBarry Smith typedef const char *MatOrderingType;
14402692d6eeSBarry Smith #define MATORDERINGNATURAL       "natural"
14412692d6eeSBarry Smith #define MATORDERINGND            "nd"
14422692d6eeSBarry Smith #define MATORDERING1WD           "1wd"
14432692d6eeSBarry Smith #define MATORDERINGRCM           "rcm"
14442692d6eeSBarry Smith #define MATORDERINGQMD           "qmd"
14452692d6eeSBarry Smith #define MATORDERINGROWLENGTH     "rowlength"
1446510184a7SJed Brown #define MATORDERINGWBM           "wbm"
1447fc1bef75SJed Brown #define MATORDERINGSPECTRAL      "spectral"
1448312e372aSBarry Smith #define MATORDERINGAMD           "amd"           /* only works if UMFPACK is installed with PETSc */
1449048412efSPablo Brubeck #define MATORDERINGMETISND       "metisnd"       /* only works if METIS is installed with PETSc */
14509bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */
14512c7c0729SBarry Smith #define MATORDERINGEXTERNAL      "external"      /* uses an ordering type internal to the factorization package */
1452b12f92e5SBarry Smith 
145319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrdering(Mat, MatOrderingType, IS *, IS *);
1454140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrderingList(PetscFunctionList *);
1455bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode    MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *));
1456140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList;
1457d4fbbf0eSBarry Smith 
1458013e2dc7SBarry Smith #include "petscmatcoarsen.h"
1459013e2dc7SBarry Smith 
1460014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS);
1461fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *);
1462a2ce50c7SBarry Smith 
14634ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *);
14644ac6704cSBarry Smith 
1465d91e6319SBarry Smith /*S
14662ef1f0ffSBarry Smith    MatFactorShiftType - Type of numeric shift used for factorizations
1467d90ac83dSHong Zhang 
14682ef1f0ffSBarry Smith    Values:
14692ef1f0ffSBarry Smith +  `MAT_SHIFT_NONE`              - do not shift the matrix diagonal entries
14702ef1f0ffSBarry Smith .  `MAT_SHIFT_NONZERO`           - shift the entries to be non-zero
14712ef1f0ffSBarry Smith .  `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite
14722ef1f0ffSBarry Smith -  `MAT_SHIFT_INBLOCKS`          - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ`
1473d90ac83dSHong Zhang 
14742ef1f0ffSBarry Smith    Level: intermediate
14752ef1f0ffSBarry Smith 
14761cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()`
1477d90ac83dSHong Zhang S*/
14789371c9d4SSatish Balay typedef enum {
14799371c9d4SSatish Balay   MAT_SHIFT_NONE,
14809371c9d4SSatish Balay   MAT_SHIFT_NONZERO,
14819371c9d4SSatish Balay   MAT_SHIFT_POSITIVE_DEFINITE,
14829371c9d4SSatish Balay   MAT_SHIFT_INBLOCKS
14839371c9d4SSatish Balay } MatFactorShiftType;
14846a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[];
14855e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[];
1486d90ac83dSHong Zhang 
1487d90ac83dSHong Zhang /*S
1488ec5066bdSBarry Smith     MatFactorError - indicates what type of error was generated in a matrix factorization
14899aa7eafdSHong Zhang 
14902ef1f0ffSBarry Smith     Values:
14912ef1f0ffSBarry Smith +   `MAT_FACTOR_NOERROR`           - there was no error during the factorization
14922ef1f0ffSBarry Smith .   `MAT_FACTOR_STRUCT_ZEROPIVOT`  - there was a missing entry in a diagonal location of the matrix
14932ef1f0ffSBarry Smith .   `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization
14942ef1f0ffSBarry Smith .   `MAT_FACTOR_OUTMEMORY`         - the factorization has run out of memory
14952ef1f0ffSBarry Smith -   `MAT_FACTOR_OTHER`             - some other error has occurred.
14969aa7eafdSHong Zhang 
14972ef1f0ffSBarry Smith     Level: intermediate
149800e125f8SBarry Smith 
14992ef1f0ffSBarry Smith     Note:
15002ef1f0ffSBarry Smith     When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason`
15012ef1f0ffSBarry Smith 
15021cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`,
15032ef1f0ffSBarry Smith           `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason`
15049aa7eafdSHong Zhang S*/
15059371c9d4SSatish Balay typedef enum {
15069371c9d4SSatish Balay   MAT_FACTOR_NOERROR,
15079371c9d4SSatish Balay   MAT_FACTOR_STRUCT_ZEROPIVOT,
15089371c9d4SSatish Balay   MAT_FACTOR_NUMERIC_ZEROPIVOT,
15099371c9d4SSatish Balay   MAT_FACTOR_OUTMEMORY,
15109371c9d4SSatish Balay   MAT_FACTOR_OTHER
15119371c9d4SSatish Balay } MatFactorError;
15129aa7eafdSHong Zhang 
151300e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *);
1514b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat);
15157b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *);
151600e125f8SBarry Smith 
15179aa7eafdSHong Zhang /*S
1518422a814eSBarry Smith    MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization
1519b00f7748SHong Zhang 
1520b00f7748SHong Zhang    Level: developer
1521b00f7748SHong Zhang 
15222ef1f0ffSBarry Smith    Note:
15232ef1f0ffSBarry Smith    You can use `MatFactorInfoInitialize()` to set default values.
1524b00f7748SHong Zhang 
15252ef1f0ffSBarry Smith    Fortran Note:
15262ef1f0ffSBarry Smith    The data is available in a double precision arrays of size `MAT_FACTORINFO_SIZE`
15272ef1f0ffSBarry Smith 
15281cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`,
15292ef1f0ffSBarry Smith           `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()`
1530b00f7748SHong Zhang S*/
1531b00f7748SHong Zhang typedef struct {
153215e8a5b3SHong Zhang   PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */
153385317021SBarry Smith   PetscReal usedt;
153415e8a5b3SHong Zhang   PetscReal dt;            /* drop tolerance */
1535b00f7748SHong Zhang   PetscReal dtcol;         /* tolerance for pivoting */
153615e8a5b3SHong Zhang   PetscReal dtcount;       /* maximum nonzeros to be allowed per row */
153767e28bfeSBarry Smith   PetscReal fill;          /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */
1538348344bbSBarry Smith   PetscReal levels;        /* ICC/ILU(levels) */
1539bcd9e38bSBarry Smith   PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0
1540bcd9e38bSBarry Smith                                    factorization may be faster if do not pivot */
154115e8a5b3SHong Zhang   PetscReal zeropivot;     /* pivot is called zero if less than this */
1542f4db908eSBarry Smith   PetscReal shifttype;     /* type of shift added to matrix factor to prevent zero pivots */
1543f4db908eSBarry Smith   PetscReal shiftamount;   /* how large the shift is */
154415e8a5b3SHong Zhang } MatFactorInfo;
1545ffa6d0a5SLois Curfman McInnes 
1546014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *);
15479a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *);
15489a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15499a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *);
15509a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *);
15519a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *);
15529a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15539a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15549a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15559a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *);
15569a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *);
15573f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *);
15583f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15593f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *);
1560014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *);
1561014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec);
1562014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec);
1563014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec);
1564014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec);
1565014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec);
1566014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec);
1567014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs);
15687c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat);
15697c2f51b8SStefano Zampini 
15709371c9d4SSatish Balay typedef enum {
15719371c9d4SSatish Balay   MAT_FACTOR_SCHUR_UNFACTORED,
15729371c9d4SSatish Balay   MAT_FACTOR_SCHUR_FACTORED,
15739371c9d4SSatish Balay   MAT_FACTOR_SCHUR_INVERTED
15749371c9d4SSatish Balay } MatFactorSchurStatus;
15758e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS);
15767c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15777c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus);
15785a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat);
15797c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15805a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec);
15815a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec);
15826dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat);
1583bb5a7306SBarry Smith 
15848a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat);
1585d91e6319SBarry Smith /*E
1586d91e6319SBarry Smith    MatSORType - What type of (S)SOR to perform
1587bb1eb677SSatish Balay 
15882ef1f0ffSBarry Smith    Values:
15892ef1f0ffSBarry Smith +  `SOR_FORWARD_SWEEP`         - do a sweep from the first row of the matrix to the last
15902ef1f0ffSBarry Smith .  `SOR_BACKWARD_SWEEP`        - do a sweep from the last row to the first
15912ef1f0ffSBarry Smith .  `SOR_SYMMETRIC_SWEEP`       - do a sweep from the first row to the last and then back to the first
1592af27ebaaSBarry Smith .  `SOR_LOCAL_FORWARD_SWEEP`   - each MPI process does its own forward sweep with no communication
1593af27ebaaSBarry Smith .  `SOR_LOCAL_BACKWARD_SWEEP`  - each MPI process does its own backward sweep with no communication
1594af27ebaaSBarry Smith .  `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI process does its own symmetric sweep with no communication
15952ef1f0ffSBarry Smith .  `SOR_ZERO_INITIAL_GUESS`    - indicates the initial solution is zero so the sweep can avoid unneeded computation
15962ef1f0ffSBarry Smith .  `SOR_EISENSTAT`             - apply the Eisentat application of SOR, see `PCEISENSTAT`
15972ef1f0ffSBarry Smith .  `SOR_APPLY_UPPER`           - multiply by the upper triangular portion of the matrix
15982ef1f0ffSBarry Smith -  `SOR_APPLY_LOWER`           - multiply by the lower triangular portion of the matrix
15992ef1f0ffSBarry Smith 
1600d91e6319SBarry Smith    Level: beginner
1601d91e6319SBarry Smith 
16022ef1f0ffSBarry Smith    Note:
16032ef1f0ffSBarry Smith    These may be bitwise ORd together
1604d9274352SBarry Smith 
16052ef1f0ffSBarry Smith    Developer Note:
16062ef1f0ffSBarry Smith    Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below
1607d91e6319SBarry Smith 
16081cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSOR()`
1609d91e6319SBarry Smith E*/
16109371c9d4SSatish Balay typedef enum {
16119371c9d4SSatish Balay   SOR_FORWARD_SWEEP         = 1,
16129371c9d4SSatish Balay   SOR_BACKWARD_SWEEP        = 2,
16139371c9d4SSatish Balay   SOR_SYMMETRIC_SWEEP       = 3,
16149371c9d4SSatish Balay   SOR_LOCAL_FORWARD_SWEEP   = 4,
16159371c9d4SSatish Balay   SOR_LOCAL_BACKWARD_SWEEP  = 8,
16169371c9d4SSatish Balay   SOR_LOCAL_SYMMETRIC_SWEEP = 12,
16179371c9d4SSatish Balay   SOR_ZERO_INITIAL_GUESS    = 16,
16189371c9d4SSatish Balay   SOR_EISENSTAT             = 32,
16199371c9d4SSatish Balay   SOR_APPLY_UPPER           = 64,
16209371c9d4SSatish Balay   SOR_APPLY_LOWER           = 128
16219371c9d4SSatish Balay } MatSORType;
1622014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
16238ed539a5SBarry Smith 
16247086a01eSPeter Brune /*S
16257086a01eSPeter Brune    MatColoring - Object for managing the coloring of matrices.
16267086a01eSPeter Brune 
16277086a01eSPeter Brune    Level: beginner
16287086a01eSPeter Brune 
1629ec5066bdSBarry Smith    Notes:
163087497f52SBarry Smith    Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
163187497f52SBarry Smith    matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors).
1632ec5066bdSBarry Smith 
163387497f52SBarry Smith    Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This
16342ef1f0ffSBarry Smith    same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices.
1635ec5066bdSBarry Smith 
16361cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`,
16372ef1f0ffSBarry Smith           `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`,
16382ef1f0ffSBarry Smith           `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen`
16397086a01eSPeter Brune S*/
1640d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring;
1641d4db15c4SBarry Smith 
1642d4db15c4SBarry Smith /*J
1643d4db15c4SBarry Smith    MatColoringType - String with the name of a PETSc matrix coloring
1644d9274352SBarry Smith 
1645d9274352SBarry Smith    Level: beginner
1646d9274352SBarry Smith 
16471cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring`
164876bdecfbSBarry Smith J*/
164919fd82e9SBarry Smith typedef const char *MatColoringType;
16505567d71aSPeter Brune #define MATCOLORINGJP      "jp"
1651b9acb617SPeter Brune #define MATCOLORINGPOWER   "power"
16522692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural"
16532692d6eeSBarry Smith #define MATCOLORINGSL      "sl"
16542692d6eeSBarry Smith #define MATCOLORINGLF      "lf"
16552692d6eeSBarry Smith #define MATCOLORINGID      "id"
16568121bdceSPeter Brune #define MATCOLORINGGREEDY  "greedy"
1657b12f92e5SBarry Smith 
16588ac6da0aSPeter Brune /*E
16592ef1f0ffSBarry Smith    MatColoringWeightType - Type of weight scheme used for the coloring algorithm
16608ac6da0aSPeter Brune 
16612ef1f0ffSBarry Smith    Values:
166287497f52SBarry Smith +  `MAT_COLORING_RANDOM`  - Random weights
166387497f52SBarry Smith .  `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering.
166487497f52SBarry Smith -  `MAT_COLORING_LF`      - Last-first weighting.
16658ac6da0aSPeter Brune 
16668ac6da0aSPeter Brune     Level: intermediate
16678ac6da0aSPeter Brune 
16681cc06b55SBarry Smith .seealso: [](ch_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()`
16698ac6da0aSPeter Brune E*/
16709371c9d4SSatish Balay typedef enum {
16719371c9d4SSatish Balay   MAT_COLORING_WEIGHT_RANDOM,
16729371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LEXICAL,
16739371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LF,
16749371c9d4SSatish Balay   MAT_COLORING_WEIGHT_SL
16759371c9d4SSatish Balay } MatColoringWeightType;
16768ac6da0aSPeter Brune 
1677335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *);
1678d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *);
1679335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *);
1680335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer);
1681335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType);
1682335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring);
1683335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt);
1684335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *);
1685335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt);
1686335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *);
1687335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *);
1688335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring));
1689014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *);
16908ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType);
1691c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *);
16928ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm);
1693bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring);
1694edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatColoringTest()", ) static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring)
1695d71ae5a4SJacob Faibussowitsch {
16969371c9d4SSatish Balay   return MatColoringTest(matcoloring, iscoloring);
16979371c9d4SSatish Balay }
1698bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring);
1699639f9d9dSBarry Smith 
1700d9274352SBarry Smith /*S
170187497f52SBarry Smith    MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring
1702639f9d9dSBarry Smith 
1703d9274352SBarry Smith    Level: beginner
1704d9274352SBarry Smith 
1705ec5066bdSBarry Smith    Notes:
170687497f52SBarry Smith    This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()`
1707ec5066bdSBarry Smith 
17082ef1f0ffSBarry Smith    The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object
17092ef1f0ffSBarry Smith 
17101cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()`
1711d9274352SBarry Smith S*/
1712e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring;
1713639f9d9dSBarry Smith 
1714014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *);
1715014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *);
1716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer);
1717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *);
1718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **);
1719014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal);
1720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring);
1721d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *);
1722014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec);
1723edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]);
1724f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring);
1725f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt);
1726bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *);
1727b1683b59SHong Zhang 
1728b1683b59SHong Zhang /*S
1729af27ebaaSBarry Smith    MatTransposeColoring - Object for computing a sparse matrix product $C = A*B^T$ via coloring
1730b1683b59SHong Zhang 
17312ef1f0ffSBarry Smith    Level: developer
1732b1683b59SHong Zhang 
17331cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()`
1734b1683b59SHong Zhang S*/
1735b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring;
1736b1683b59SHong Zhang 
1737014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *);
1738014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat);
1739014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat);
1740014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *);
1741b1683b59SHong Zhang 
1742d9274352SBarry Smith /*S
1743d9274352SBarry Smith    MatPartitioning - Object for managing the partitioning of a matrix or graph
1744d9274352SBarry Smith 
1745d9274352SBarry Smith    Level: beginner
1746d9274352SBarry Smith 
174787497f52SBarry Smith    Note:
174887497f52SBarry Smith    There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations
174987497f52SBarry Smith    via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`)
1750ec5066bdSBarry Smith 
1751b5e6e808SPierre Jolivet    Developer Note:
17522ef1f0ffSBarry Smith    It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed
1753ec5066bdSBarry Smith 
17541cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`,
17552ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
1756d9274352SBarry Smith S*/
175791e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning;
1758d9274352SBarry Smith 
175976bdecfbSBarry Smith /*J
17608f6c3df8SBarry Smith     MatPartitioningType - String with the name of a PETSc matrix partitioning
1761d9274352SBarry Smith 
1762d9274352SBarry Smith    Level: beginner
17630d04baf8SBarry Smith dm
17641cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`,
17652ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
176676bdecfbSBarry Smith J*/
176719fd82e9SBarry Smith typedef const char *MatPartitioningType;
17682692d6eeSBarry Smith #define MATPARTITIONINGCURRENT  "current"
1769aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE  "average"
17702692d6eeSBarry Smith #define MATPARTITIONINGSQUARE   "square"
17712692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis"
17722692d6eeSBarry Smith #define MATPARTITIONINGCHACO    "chaco"
17732692d6eeSBarry Smith #define MATPARTITIONINGPARTY    "party"
177450d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch"
177588d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch"
177671306c60Sjroman 
1777014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *);
177819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType);
1779014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt);
1780014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat);
1781252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt);
1782014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]);
1783014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]);
1784ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool);
1785ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *);
1786014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *);
1787fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *);
1788668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS);
1789f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *);
1790014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *);
1791bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning));
1792014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer);
1793fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]);
1794014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning);
179519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *);
1796ca161407SBarry Smith 
179727538973SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part);
1798014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning);
1799014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *);
18000752156aSBarry Smith 
18019371c9d4SSatish Balay typedef enum {
18029371c9d4SSatish Balay   MP_CHACO_MULTILEVEL = 1,
18039371c9d4SSatish Balay   MP_CHACO_SPECTRAL   = 2,
18049371c9d4SSatish Balay   MP_CHACO_LINEAR     = 4,
18059371c9d4SSatish Balay   MP_CHACO_RANDOM     = 5,
18069371c9d4SSatish Balay   MP_CHACO_SCATTERED  = 6
18079371c9d4SSatish Balay } MPChacoGlobalType;
18086a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[];
18099371c9d4SSatish Balay typedef enum {
18109371c9d4SSatish Balay   MP_CHACO_KERNIGHAN = 1,
18119371c9d4SSatish Balay   MP_CHACO_NONE      = 2
18129371c9d4SSatish Balay } MPChacoLocalType;
18136a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[];
18149371c9d4SSatish Balay typedef enum {
18159371c9d4SSatish Balay   MP_CHACO_LANCZOS = 0,
18169371c9d4SSatish Balay   MP_CHACO_RQI     = 1
18179371c9d4SSatish Balay } MPChacoEigenType;
18186a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[];
1819b6956c12SJose Roman 
1820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType);
1821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *);
1822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType);
1823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *);
1824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal);
1825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType);
1826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *);
1827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal);
1828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *);
1829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt);
1830014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *);
183171306c60Sjroman 
183271306c60Sjroman #define MP_PARTY_OPT "opt"
183371306c60Sjroman #define MP_PARTY_LIN "lin"
183471306c60Sjroman #define MP_PARTY_SCA "sca"
183571306c60Sjroman #define MP_PARTY_RAN "ran"
183671306c60Sjroman #define MP_PARTY_GBF "gbf"
183771306c60Sjroman #define MP_PARTY_GCF "gcf"
183871306c60Sjroman #define MP_PARTY_BUB "bub"
183971306c60Sjroman #define MP_PARTY_DEF "def"
1840014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *);
184171306c60Sjroman #define MP_PARTY_HELPFUL_SETS  "hs"
184271306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl"
184371306c60Sjroman #define MP_PARTY_NONE          "no"
1844014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *);
1845014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal);
1846014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool);
1847014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool);
184871306c60Sjroman 
18499371c9d4SSatish Balay typedef enum {
18509371c9d4SSatish Balay   MP_PTSCOTCH_DEFAULT,
18519371c9d4SSatish Balay   MP_PTSCOTCH_QUALITY,
18529371c9d4SSatish Balay   MP_PTSCOTCH_SPEED,
18539371c9d4SSatish Balay   MP_PTSCOTCH_BALANCE,
18549371c9d4SSatish Balay   MP_PTSCOTCH_SAFETY,
18559371c9d4SSatish Balay   MP_PTSCOTCH_SCALABILITY
18569371c9d4SSatish Balay } MPPTScotchStrategyType;
18576a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[];
1858e0f1cffaSJose Roman 
1859014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal);
1860014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *);
1861014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType);
1862014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *);
186371306c60Sjroman 
1864b43b03e9SMark F. Adams /*
18656294fa2bSFande Kong  * hierarchical partitioning
18666294fa2bSFande Kong  */
18674e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *);
18684e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *);
18694e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt);
18704e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt);
18716294fa2bSFande Kong 
1872014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *);
1873591294e4SBarry Smith 
18740752156aSBarry Smith /*
1875c786d857SStefano Zampini     If you add entries here you must also add them to src/mat/f90-mod/petscmat.h
1876c786d857SStefano Zampini     If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx
1877d4fbbf0eSBarry Smith */
18789371c9d4SSatish Balay typedef enum {
18799371c9d4SSatish Balay   MATOP_SET_VALUES               = 0,
18801c1c02c0SLois Curfman McInnes   MATOP_GET_ROW                  = 1,
18811c1c02c0SLois Curfman McInnes   MATOP_RESTORE_ROW              = 2,
18821c1c02c0SLois Curfman McInnes   MATOP_MULT                     = 3,
18831c1c02c0SLois Curfman McInnes   MATOP_MULT_ADD                 = 4,
18847c922b88SBarry Smith   MATOP_MULT_TRANSPOSE           = 5,
18857c922b88SBarry Smith   MATOP_MULT_TRANSPOSE_ADD       = 6,
18861c1c02c0SLois Curfman McInnes   MATOP_SOLVE                    = 7,
18871c1c02c0SLois Curfman McInnes   MATOP_SOLVE_ADD                = 8,
18887c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE          = 9,
18897c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE_ADD      = 10,
18901c1c02c0SLois Curfman McInnes   MATOP_LUFACTOR                 = 11,
18911c1c02c0SLois Curfman McInnes   MATOP_CHOLESKYFACTOR           = 12,
1892a714c06dSBarry Smith   MATOP_SOR                      = 13,
18931c1c02c0SLois Curfman McInnes   MATOP_TRANSPOSE                = 14,
18941c1c02c0SLois Curfman McInnes   MATOP_GETINFO                  = 15,
18951c1c02c0SLois Curfman McInnes   MATOP_EQUAL                    = 16,
18961c1c02c0SLois Curfman McInnes   MATOP_GET_DIAGONAL             = 17,
18971c1c02c0SLois Curfman McInnes   MATOP_DIAGONAL_SCALE           = 18,
18981c1c02c0SLois Curfman McInnes   MATOP_NORM                     = 19,
18991c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_BEGIN           = 20,
19001c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_END             = 21,
1901d519adbfSMatthew Knepley   MATOP_SET_OPTION               = 22,
1902d519adbfSMatthew Knepley   MATOP_ZERO_ENTRIES             = 23,
1903d519adbfSMatthew Knepley   MATOP_ZERO_ROWS                = 24,
1904d519adbfSMatthew Knepley   MATOP_LUFACTOR_SYMBOLIC        = 25,
1905d519adbfSMatthew Knepley   MATOP_LUFACTOR_NUMERIC         = 26,
1906d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27,
1907d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_NUMERIC  = 28,
1908e5f2d425SStefano Zampini   MATOP_SETUP                    = 29,
1909d519adbfSMatthew Knepley   MATOP_ILUFACTOR_SYMBOLIC       = 30,
1910d519adbfSMatthew Knepley   MATOP_ICCFACTOR_SYMBOLIC       = 31,
1911a5b7ff6bSBarry Smith   MATOP_GET_DIAGONAL_BLOCK       = 32,
1912e5f2d425SStefano Zampini   MATOP_SET_INF                  = 33,
1913d519adbfSMatthew Knepley   MATOP_DUPLICATE                = 34,
1914d519adbfSMatthew Knepley   MATOP_FORWARD_SOLVE            = 35,
1915d519adbfSMatthew Knepley   MATOP_BACKWARD_SOLVE           = 36,
1916d519adbfSMatthew Knepley   MATOP_ILUFACTOR                = 37,
1917d519adbfSMatthew Knepley   MATOP_ICCFACTOR                = 38,
1918d519adbfSMatthew Knepley   MATOP_AXPY                     = 39,
19197dae84e0SHong Zhang   MATOP_CREATE_SUBMATRICES       = 40,
1920d519adbfSMatthew Knepley   MATOP_INCREASE_OVERLAP         = 41,
1921d519adbfSMatthew Knepley   MATOP_GET_VALUES               = 42,
1922d519adbfSMatthew Knepley   MATOP_COPY                     = 43,
1923d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX              = 44,
1924d519adbfSMatthew Knepley   MATOP_SCALE                    = 45,
1925d519adbfSMatthew Knepley   MATOP_SHIFT                    = 46,
192635153367SBarry Smith   MATOP_DIAGONAL_SET             = 47,
19279d39f69dSJed Brown   MATOP_ZERO_ROWS_COLUMNS        = 48,
19289d39f69dSJed Brown   MATOP_SET_RANDOM               = 49,
1929d519adbfSMatthew Knepley   MATOP_GET_ROW_IJ               = 50,
1930d519adbfSMatthew Knepley   MATOP_RESTORE_ROW_IJ           = 51,
1931d519adbfSMatthew Knepley   MATOP_GET_COLUMN_IJ            = 52,
1932d519adbfSMatthew Knepley   MATOP_RESTORE_COLUMN_IJ        = 53,
1933d519adbfSMatthew Knepley   MATOP_FDCOLORING_CREATE        = 54,
1934d519adbfSMatthew Knepley   MATOP_COLORING_PATCH           = 55,
1935d519adbfSMatthew Knepley   MATOP_SET_UNFACTORED           = 56,
1936d519adbfSMatthew Knepley   MATOP_PERMUTE                  = 57,
1937d519adbfSMatthew Knepley   MATOP_SET_VALUES_BLOCKED       = 58,
19387dae84e0SHong Zhang   MATOP_CREATE_SUBMATRIX         = 59,
1939d519adbfSMatthew Knepley   MATOP_DESTROY                  = 60,
1940d519adbfSMatthew Knepley   MATOP_VIEW                     = 61,
1941d519adbfSMatthew Knepley   MATOP_CONVERT_FROM             = 62,
1942e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_63=63 */
19437bab7c10SHong Zhang   MATOP_MATMAT_MULT_SYMBOLIC    = 64,
19447bab7c10SHong Zhang   MATOP_MATMAT_MULT_NUMERIC     = 65,
1945d519adbfSMatthew Knepley   MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66,
1946d519adbfSMatthew Knepley   MATOP_SET_VALUES_LOCAL        = 67,
1947d519adbfSMatthew Knepley   MATOP_ZERO_ROWS_LOCAL         = 68,
1948d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX_ABS         = 69,
1949d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN_ABS         = 70,
1950d519adbfSMatthew Knepley   MATOP_CONVERT                 = 71,
1951e5f2d425SStefano Zampini   MATOP_HAS_OPERATION           = 72,
19529d39f69dSJed Brown   /* MATOP_PLACEHOLDER_73=73, */
1953d519adbfSMatthew Knepley   MATOP_SET_VALUES_ADIFOR = 74,
1954d519adbfSMatthew Knepley   MATOP_FD_COLORING_APPLY = 75,
1955d519adbfSMatthew Knepley   MATOP_SET_FROM_OPTIONS  = 76,
1956e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_77=77, */
1957e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_78=78, */
19589d39f69dSJed Brown   MATOP_FIND_ZERO_DIAGONALS       = 79,
1959d519adbfSMatthew Knepley   MATOP_MULT_MULTIPLE             = 80,
1960d519adbfSMatthew Knepley   MATOP_SOLVE_MULTIPLE            = 81,
1961d519adbfSMatthew Knepley   MATOP_GET_INERTIA               = 82,
1962d519adbfSMatthew Knepley   MATOP_LOAD                      = 83,
1963d519adbfSMatthew Knepley   MATOP_IS_SYMMETRIC              = 84,
1964d519adbfSMatthew Knepley   MATOP_IS_HERMITIAN              = 85,
1965d519adbfSMatthew Knepley   MATOP_IS_STRUCTURALLY_SYMMETRIC = 86,
1966820469bcSHong Zhang   MATOP_SET_VALUES_BLOCKEDLOCAL   = 87,
1967b41ce5d5SBarry Smith   MATOP_CREATE_VECS               = 88,
1968e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_89=89, */
1969d519adbfSMatthew Knepley   MATOP_MAT_MULT_SYMBOLIC = 90,
1970d519adbfSMatthew Knepley   MATOP_MAT_MULT_NUMERIC  = 91,
1971e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_92=92, */
1972d519adbfSMatthew Knepley   MATOP_PTAP_SYMBOLIC = 93,
1973d519adbfSMatthew Knepley   MATOP_PTAP_NUMERIC  = 94,
1974e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_95=95, */
1975bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96,
1976bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_NUMER = 97,
1977e5f2d425SStefano Zampini   MATOP_BIND_TO_CPU              = 98,
19787a3c3d58SStefano Zampini   MATOP_PRODUCTSETFROMOPTIONS    = 99,
19797a3c3d58SStefano Zampini   MATOP_PRODUCTSYMBOLIC          = 100,
19807a3c3d58SStefano Zampini   MATOP_PRODUCTNUMERIC           = 101,
1981d519adbfSMatthew Knepley   MATOP_CONJUGATE                = 102,
1982e5f2d425SStefano Zampini   MATOP_VIEW_NATIVE              = 103,
1983d519adbfSMatthew Knepley   MATOP_SET_VALUES_ROW           = 104,
1984d519adbfSMatthew Knepley   MATOP_REAL_PART                = 105,
1985bda6c4cbSBarry Smith   MATOP_IMAGINARY_PART           = 106,
1986bda6c4cbSBarry Smith   MATOP_GET_ROW_UPPER_TRIANGULAR = 107,
1987bda6c4cbSBarry Smith   MATOP_RESTORE_ROW_UPPER_TRIANG = 108,
1988bda6c4cbSBarry Smith   MATOP_MAT_SOLVE                = 109,
198929eadf9eSStefano Zampini   MATOP_MAT_SOLVE_TRANSPOSE      = 110,
1990d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN              = 111,
19910e8d04f7SBarry Smith   MATOP_GET_COLUMN_VECTOR        = 112,
1992d519adbfSMatthew Knepley   MATOP_MISSING_DIAGONAL         = 113,
19930e8d04f7SBarry Smith   MATOP_GET_SEQ_NONZERO_STRUCTUR = 114,
199489c6957cSBarry Smith   MATOP_CREATE                   = 115,
199589c6957cSBarry Smith   MATOP_GET_GHOSTS               = 116,
19960e8d04f7SBarry Smith   MATOP_GET_LOCAL_SUB_MATRIX     = 117,
19970e8d04f7SBarry Smith   MATOP_RESTORE_LOCALSUB_MATRIX  = 118,
1998eeffb40dSHong Zhang   MATOP_MULT_DIAGONAL_BLOCK      = 119,
19990e8d04f7SBarry Smith   MATOP_HERMITIAN_TRANSPOSE      = 120,
20000e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANSPOSE = 121,
20010e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANS_ADD = 122,
20020e8d04f7SBarry Smith   MATOP_GET_MULTI_PROC_BLOCK     = 123,
20039d39f69dSJed Brown   MATOP_FIND_NONZERO_ROWS        = 124,
20040e8d04f7SBarry Smith   MATOP_GET_COLUMN_NORMS         = 125,
20059d39f69dSJed Brown   MATOP_INVERT_BLOCK_DIAGONAL    = 126,
2006e5f2d425SStefano Zampini   MATOP_INVERT_VBLOCK_DIAGONAL   = 127,
2007b41ce5d5SBarry Smith   MATOP_CREATE_SUB_MATRICES_MPI  = 128,
20082b8ad9a3SHong Zhang   MATOP_SET_VALUES_BATCH         = 129,
2009e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_130=130, */
20100e8d04f7SBarry Smith   MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131,
2011e9b602ebSSatish Balay   MATOP_TRANSPOSE_MAT_MULT_NUMER = 132,
20120e8d04f7SBarry Smith   MATOP_TRANSPOSE_COLORING_CREAT = 133,
20130e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_SPT = 134,
20140e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_DEN = 135,
2015e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_136=136, */
20160e8d04f7SBarry Smith   MATOP_RART_SYMBOLIC         = 137,
20170e8d04f7SBarry Smith   MATOP_RART_NUMERIC          = 138,
2018e09a3074SHong Zhang   MATOP_SET_BLOCK_SIZES       = 139,
2019f9426fe0SMark Adams   MATOP_AYPX                  = 140,
20201919a2e2SJed Brown   MATOP_RESIDUAL              = 141,
20219c8f2541SHong Zhang   MATOP_FDCOLORING_SETUP      = 142,
2022e5f2d425SStefano Zampini   MATOP_FIND_OFFBLOCK_ENTRIES = 143,
20232d033e1fSHong Zhang   MATOP_MPICONCATENATESEQ     = 144,
2024bb01b7b0SPatrick Sanan   MATOP_DESTROYSUBMATRICES    = 145,
20254ac41c6fSJose E. Roman   MATOP_MAT_TRANSPOSE_SOLVE   = 146,
20264ac41c6fSJose E. Roman   MATOP_GET_VALUES_LOCAL      = 147,
20274ac41c6fSJose E. Roman   MATOP_CREATE_GRAPH          = 148,
20284ac41c6fSJose E. Roman   /* MATOP_PLACEHOLDER_149=149, */
20294ac41c6fSJose E. Roman   MATOP_TRANSPOSE_SYMBOLIC  = 150,
20304ac41c6fSJose E. Roman   MATOP_ELIMINATE_ZEROS     = 151,
20312b938fe4SJose E. Roman   MATOP_GET_ROW_SUM_ABS     = 152,
203242ce410bSJunchao Zhang   MATOP_GET_FACTOR          = 153,
203342ce410bSJunchao Zhang   MATOP_GET_BLOCK_DIAGONAL  = 154, // NOTE: caller of the two op functions owns the returned matrix
203442ce410bSJunchao Zhang   MATOP_GET_VBLOCK_DIAGONAL = 155  // and need to destroy it after use.
2035fae171e0SBarry Smith } MatOperation;
20360c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void));
2037976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void));
2038976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *);
203994342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *);
2040edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatProductClear()", ) static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A)
2041d71ae5a4SJacob Faibussowitsch {
20429371c9d4SSatish Balay   return MatProductClear(A);
20439371c9d4SSatish Balay }
2044014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void));
2045014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void));
2046014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *);
2047*d1319cabSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscCtxDestroyFn *);
2048db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType);
2049f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
2050f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
20510c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat);
2052b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType);
2053b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *);
2054112a2221SBarry Smith 
205590ace30eSBarry Smith /*
205690ace30eSBarry Smith    Codes for matrices stored on disk. By default they are
205790ace30eSBarry Smith    stored in a universal format. By changing the format with
20586a9046bcSBarry Smith    PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will
205990ace30eSBarry Smith    be stored in a way natural for the matrix, for example dense matrices
206090ace30eSBarry Smith    would be stored as dense. Matrices stored this way may only be
2061f4403165SShri Abhyankar    read into matrices of the same type.
206290ace30eSBarry Smith */
206390ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1
206490ace30eSBarry Smith 
2065014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal);
206675d48cdbSStefano Zampini 
20678546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType);
206875d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
20694f58015eSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetAllowRepeated(Mat, PetscBool);
20704f58015eSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetAllowRepeated(Mat, PetscBool *);
207175d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool);
2072f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool);
2073014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *);
20743b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *);
2075014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat);
2076e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
20771f4e1ec7SBarry Smith 
2078d9274352SBarry Smith /*S
2079d9274352SBarry Smith    MatNullSpace - Object that removes a null space from a vector, i.e.
2080cb6b9846SMatthew Knepley                   orthogonalizes the vector to a subspace
2081d9274352SBarry Smith 
2082f7a9e4ceSBarry Smith    Level: advanced
2083d9274352SBarry Smith 
20841cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()`
2085d9274352SBarry Smith S*/
208674637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace;
2087d9274352SBarry Smith 
2088014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *);
2089014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *);
2090014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *);
2091d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec);
2092014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *);
20935fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *);
20945fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace);
2095014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace);
2096014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace);
2097014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *);
20984849c82aSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNullSpaces(PetscInt, Mat[], MatNullSpace *[]);
20994849c82aSBarry Smith PETSC_EXTERN PetscErrorCode MatRestoreNullSpaces(PetscInt, Mat[], MatNullSpace *[]);
2100014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *);
2101014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer);
2102014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **);
2103014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *);
210474637425SBarry Smith 
2105014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS);
2106014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal);
2107014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *);
21083f1d51d7SBarry Smith 
2109014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *);
2110014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *);
2111014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *);
2112c4f061fbSSatish Balay 
21130bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *);
21140bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *);
21150bacdadaSStefano Zampini 
2116edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperator()", ) static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B)
2117d71ae5a4SJacob Faibussowitsch {
2118f22e26b7SPierre Jolivet   return MatComputeOperator(A, PETSC_NULLPTR, B);
21199371c9d4SSatish Balay }
2120edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperatorTranspose()", ) static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B)
2121d71ae5a4SJacob Faibussowitsch {
2122f22e26b7SPierre Jolivet   return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B);
21239371c9d4SSatish Balay }
2124b0a32e0cSBarry Smith 
212549bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *);
212649bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *);
2127a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **);
2128a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2129a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **);
2130a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **);
2131a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **);
2132a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2133a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **);
2134a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **);
2135dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat);
2136dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]);
2137dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]);
2138910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *);
213949bd79ccSDebojyoti Ghosh 
2140014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec);
214104f1ad80SBarry Smith 
21424bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDInitializePackage(void);
21434bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDFinalizePackage(void);
21444bf303faSJacob Faibussowitsch 
2145014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2146014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec);
2147014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *);
2148014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *));
2149014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec));
2150014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt);
2151014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat);
2152014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal);
2153014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt);
2154014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *);
2155014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]);
2156014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *);
2157014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *);
2158e884886fSBarry Smith 
21596370053bSBarry Smith /*S
21606370053bSBarry Smith     MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free
21616370053bSBarry Smith               Jacobian vector products
2162e884886fSBarry Smith 
21632ef1f0ffSBarry Smith     Level: developer
21642ef1f0ffSBarry Smith 
216595452b02SPatrick Sanan     Notes:
216687497f52SBarry Smith     `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure
21676370053bSBarry Smith 
21682ef1f0ffSBarry Smith      MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure
21696370053bSBarry Smith 
21702ef1f0ffSBarry Smith     This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator`
21716370053bSBarry Smith 
21721cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`,
21732ef1f0ffSBarry Smith           `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator`
21746370053bSBarry Smith S*/
2175e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD;
2176e884886fSBarry Smith 
217776bdecfbSBarry Smith /*J
21782ef1f0ffSBarry Smith    MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function
2179e884886fSBarry Smith 
218016a05f60SBarry Smith    Values:
2181af27ebaaSBarry Smith +   `MATMFFD_DS` - an algorithm described by Dennis and Schnabel {cite}`dennis:83`
2182af27ebaaSBarry Smith -   `MATMFFD_WP` - the Walker-Pernice {cite}`pw98` strategy.
218316a05f60SBarry Smith 
2184e884886fSBarry Smith    Level: beginner
2185e884886fSBarry Smith 
21861cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()`
218776bdecfbSBarry Smith J*/
218819fd82e9SBarry Smith typedef const char *MatMFFDType;
2189e884886fSBarry Smith #define MATMFFD_DS "ds"
2190e884886fSBarry Smith #define MATMFFD_WP "wp"
2191e884886fSBarry Smith 
219219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType);
2193bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD));
2194e884886fSBarry Smith 
2195014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal);
2196014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool);
2197e884886fSBarry Smith 
219861ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType);
219961ab5df0SBarry Smith 
2200014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *);
2201014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *);
22027dbadf16SMatthew Knepley 
220353022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS
22048434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscScalar(MatH2OpusKernelFn)(PetscInt, PetscReal[], PetscReal[], void *);
22058434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatH2OpusKernelFn *MatH2OpusKernel;
2206659ebe53SBarry Smith 
22078434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernelFn *, void *, PetscReal, PetscInt, PetscInt, Mat *);
220853022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *);
220953022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal);
221053022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat);
221153022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal);
221253022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool);
221353022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *);
221453022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *);
221553022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *);
2216300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar);
2217a0d2e7d8SStefano Zampini #endif
2218a0d2e7d8SStefano Zampini 
2219c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL
22208434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode(MatHtoolKernelFn)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *);
22218434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatHtoolKernelFn *MatHtoolKernel;
2222659ebe53SBarry Smith 
22238434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernelFn *, void *, Mat *);
22248434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernelFn *, void *);
222598e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *);
222698e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *);
222798e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool);
22282ef1f0ffSBarry Smith 
2229c7a4214aSPierre Jolivet /*E
223087497f52SBarry Smith    MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL`
2231c7a4214aSPierre Jolivet 
2232c7a4214aSPierre Jolivet    Values:
223387497f52SBarry Smith +  `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation
223487497f52SBarry Smith .  `MAT_HTOOL_COMPRESSOR_FULL_ACA`                 - full adaptive cross approximation
223587497f52SBarry Smith -  `MAT_HTOOL_COMPRESSOR_SVD`                      - singular value decomposition
2236c7a4214aSPierre Jolivet 
223716a05f60SBarry Smith    Level: intermediate
223816a05f60SBarry Smith 
22391cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType`
2240c7a4214aSPierre Jolivet E*/
22419371c9d4SSatish Balay typedef enum {
22429371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA,
22439371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_FULL_ACA,
22449371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SVD
22459371c9d4SSatish Balay } MatHtoolCompressorType;
22462ef1f0ffSBarry Smith 
224798e73e17SPierre Jolivet /*E
224887497f52SBarry Smith    MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL`
224998e73e17SPierre Jolivet 
225098e73e17SPierre Jolivet    Values:
225187497f52SBarry Smith +  `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default)    - axis computed via principle component analysis, split uniformly
225287497f52SBarry Smith .  `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC`            - axis computed via principle component analysis, split barycentrically
225387497f52SBarry Smith .  `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR`   - axis along the largest extent of the bounding box, split uniformly
225487497f52SBarry Smith -  `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically
225598e73e17SPierre Jolivet 
225616a05f60SBarry Smith    Level: intermediate
225716a05f60SBarry Smith 
22582ef1f0ffSBarry Smith    Note:
22592ef1f0ffSBarry Smith    Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types
226098e73e17SPierre Jolivet 
22611cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType`
226298e73e17SPierre Jolivet E*/
22639371c9d4SSatish Balay typedef enum {
22649371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_REGULAR,
22659371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC,
22669371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR,
22679371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC
22689371c9d4SSatish Balay } MatHtoolClusteringType;
2269c7a4214aSPierre Jolivet #endif
2270c7a4214aSPierre Jolivet 
227197969023SHong Zhang #ifdef PETSC_HAVE_MUMPS
2272014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt);
2273bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *);
2274b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal);
2275bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *);
2276bc6112feSHong Zhang 
2277ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *);
2278ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *);
2279ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *);
2280ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *);
22815c0bae8cSAshish Patel PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **);
228289a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat);
22830e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat);
228497969023SHong Zhang #endif
228523a5497aSJed Brown 
2286b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO
2287d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt);
2288b500a6b7SJose David Bermeol #endif
2289b500a6b7SJose David Bermeol 
2290d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO
2291d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt);
2292d305a81bSVasiliy Kozyrev #endif
2293d305a81bSVasiliy Kozyrev 
2294d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU
2295014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal);
2296d954db57SHong Zhang #endif
2297d954db57SHong Zhang 
2298fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST
2299fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *);
2300fb785984SHong Zhang #endif
2301fb785984SHong Zhang 
2302575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK
2303542aee0fSPieter Ghysels /*E
230429e0a805SPieter Ghysels     MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK`
2305542aee0fSPieter Ghysels 
23062ef1f0ffSBarry Smith     Values:
23072ef1f0ffSBarry Smith +  `MAT_STRUMPACK_NATURAL`   - use the current ordering
23082ef1f0ffSBarry Smith .  `MAT_STRUMPACK_METIS`     - use MeTis to compute an ordering
23092ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PARMETIS`  - use ParMeTis to compute an ordering
23102ef1f0ffSBarry Smith .  `MAT_STRUMPACK_SCOTCH`    - use Scotch to compute an ordering
23112ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PTSCOTCH`  - use parallel Scotch to compute an ordering
231229e0a805SPieter Ghysels .  `MAT_STRUMPACK_RCM`       - use an RCM ordering
231329e0a805SPieter Ghysels .  `MAT_STRUMPACK_GEOMETRIC` - use a geometric ordering (needs mesh info from user)
231429e0a805SPieter Ghysels .  `MAT_STRUMPACK_AMD`       - approximate minimum degree
231529e0a805SPieter Ghysels .  `MAT_STRUMPACK_MMD`       - multiple minimum degree
231629e0a805SPieter Ghysels .  `MAT_STRUMPACK_AND`       - approximate nested dissection
231729e0a805SPieter Ghysels .  `MAT_STRUMPACK_MLF`       - minimum local fill
231829e0a805SPieter Ghysels -  `MAT_STRUMPACK_SPECTRAL`  - spectral nested dissection
23192ef1f0ffSBarry Smith 
232016a05f60SBarry Smith     Level: intermediate
232116a05f60SBarry Smith 
23222ef1f0ffSBarry Smith     Developer Note:
23232ef1f0ffSBarry Smith     Should be called `MatSTRUMPACKReorderingType`
23242ef1f0ffSBarry Smith 
232529e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetReordering()`
2326542aee0fSPieter Ghysels E*/
23279371c9d4SSatish Balay typedef enum {
232829e0a805SPieter Ghysels   MAT_STRUMPACK_NATURAL,
232929e0a805SPieter Ghysels   MAT_STRUMPACK_METIS,
233029e0a805SPieter Ghysels   MAT_STRUMPACK_PARMETIS,
233129e0a805SPieter Ghysels   MAT_STRUMPACK_SCOTCH,
233229e0a805SPieter Ghysels   MAT_STRUMPACK_PTSCOTCH,
233329e0a805SPieter Ghysels   MAT_STRUMPACK_RCM,
233429e0a805SPieter Ghysels   MAT_STRUMPACK_GEOMETRIC,
233529e0a805SPieter Ghysels   MAT_STRUMPACK_AMD,
233629e0a805SPieter Ghysels   MAT_STRUMPACK_MMD,
233729e0a805SPieter Ghysels   MAT_STRUMPACK_AND,
233829e0a805SPieter Ghysels   MAT_STRUMPACK_MLF,
233929e0a805SPieter Ghysels   MAT_STRUMPACK_SPECTRAL
23409371c9d4SSatish Balay } MatSTRUMPACKReordering;
23412ef1f0ffSBarry Smith 
234234f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering);
234329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetReordering(Mat, MatSTRUMPACKReordering *);
234429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricNxyz(Mat, PetscInt, PetscInt, PetscInt);
234529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricComponents(Mat, PetscInt);
234629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricWidth(Mat, PetscInt);
2347575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool);
234829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetColPerm(Mat, PetscBool *);
234929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGPU(Mat, PetscBool);
235029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetGPU(Mat, PetscBool *);
235129e0a805SPieter Ghysels 
235229e0a805SPieter Ghysels /*E
235329e0a805SPieter Ghysels     MatSTRUMPACKCompressionType - Compression used in the approximate sparse factorization solver `MATSOLVERSTRUMPACK`
235429e0a805SPieter Ghysels 
235529e0a805SPieter Ghysels     Values:
235629e0a805SPieter Ghysels +  `MAT_STRUMPACK_COMPRESSION_TYPE_NONE`          - no compression, direct solver
235729e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_HSS`           - hierarchically semi-separable
235829e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_BLR`           - block low rank
235929e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_HODLR`         - hierarchically off-diagonal low rank (requires ButterfyPACK support, configure with --download-butterflypack)
236029e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR`     - hybrid of BLR and HODLR (requires ButterfyPACK support, configure with --download-butterflypack)
236129e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR` - hybrid of lossy (ZFP), BLR and HODLR (requires ButterfyPACK and ZFP support, configure with --download-butterflypack --download-zfp)
236229e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS`      - lossless compression (requires ZFP support, configure with --download-zfp)
236329e0a805SPieter Ghysels -  `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY`         - lossy compression (requires ZFP support, configure with --download-zfp)
236429e0a805SPieter Ghysels 
236529e0a805SPieter Ghysels     Level: intermediate
236629e0a805SPieter Ghysels 
236729e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetCompression()`
236829e0a805SPieter Ghysels E*/
236929e0a805SPieter Ghysels typedef enum {
237029e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_NONE,
237129e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_HSS,
237229e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_BLR,
237329e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_HODLR,
237429e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR,
237529e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR,
237629e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS,
237729e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY
237829e0a805SPieter Ghysels } MatSTRUMPACKCompressionType;
237929e0a805SPieter Ghysels 
238029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompression(Mat, MatSTRUMPACKCompressionType);
238129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompression(Mat, MatSTRUMPACKCompressionType *);
238229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompRelTol(Mat, PetscReal);
238329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompRelTol(Mat, PetscReal *);
238429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompAbsTol(Mat, PetscReal);
238529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompAbsTol(Mat, PetscReal *);
238629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompMinSepSize(Mat, PetscInt);
238729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompMinSepSize(Mat, PetscInt *);
238829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLeafSize(Mat, PetscInt);
238929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLeafSize(Mat, PetscInt *);
239029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLossyPrecision(Mat, PetscInt);
239129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLossyPrecision(Mat, PetscInt *);
239229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompButterflyLevels(Mat, PetscInt);
239329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompButterflyLevels(Mat, PetscInt *);
2394575704cbSPieter Ghysels #endif
2395575704cbSPieter Ghysels 
2396b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool);
23972216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *);
2398edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 13, 0, "MatBindToCPU()", ) static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg)
2399d71ae5a4SJacob Faibussowitsch {
24009371c9d4SSatish Balay   return MatBindToCPU(A, flg);
24019371c9d4SSatish Balay }
240265a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool);
2403e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *);
2404e7e92044SBarry Smith 
2405aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA
24063f9c0db1SPaul Mullowney /*E
24072ef1f0ffSBarry Smith     MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU)
24082692e278SPaul Mullowney     matrices.
2409e057df02SPaul Mullowney 
24102ef1f0ffSBarry Smith     Values:
241187497f52SBarry Smith +   `MAT_CUSPARSE_CSR` - Compressed Sparse Row
241287497f52SBarry Smith .   `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later).
241387497f52SBarry Smith -   `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later).
2414e057df02SPaul Mullowney 
2415e057df02SPaul Mullowney     Level: intermediate
2416e057df02SPaul Mullowney 
24171cc06b55SBarry Smith .seealso: [](ch_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation`
2418e057df02SPaul Mullowney E*/
2419e057df02SPaul Mullowney 
24209371c9d4SSatish Balay typedef enum {
24219371c9d4SSatish Balay   MAT_CUSPARSE_CSR,
24229371c9d4SSatish Balay   MAT_CUSPARSE_ELL,
24239371c9d4SSatish Balay   MAT_CUSPARSE_HYB
24249371c9d4SSatish Balay } MatCUSPARSEStorageFormat;
2425e057df02SPaul Mullowney 
2426e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */
2427e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[];
2428e057df02SPaul Mullowney 
24293f9c0db1SPaul Mullowney /*E
24302ef1f0ffSBarry Smith     MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU)
24312692e278SPaul Mullowney     matrices whose operation should use a particular storage format.
2432e057df02SPaul Mullowney 
24332ef1f0ffSBarry Smith     Values:
24344cf0e950SBarry Smith +   `MAT_CUSPARSE_MULT_DIAG`    - sets the storage format for the diagonal matrix in the parallel `MatMult()`
24354cf0e950SBarry Smith .   `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()`
24364cf0e950SBarry Smith .   `MAT_CUSPARSE_MULT`         - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()`
24372ef1f0ffSBarry Smith -   `MAT_CUSPARSE_ALL`          - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices
2438e057df02SPaul Mullowney 
2439e057df02SPaul Mullowney     Level: intermediate
2440e057df02SPaul Mullowney 
24411cc06b55SBarry Smith .seealso: [](ch_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat`
2442e057df02SPaul Mullowney E*/
24439371c9d4SSatish Balay typedef enum {
24449371c9d4SSatish Balay   MAT_CUSPARSE_MULT_DIAG,
24459371c9d4SSatish Balay   MAT_CUSPARSE_MULT_OFFDIAG,
24469371c9d4SSatish Balay   MAT_CUSPARSE_MULT,
24479371c9d4SSatish Balay   MAT_CUSPARSE_ALL
24489371c9d4SSatish Balay } MatCUSPARSEFormatOperation;
2449e057df02SPaul Mullowney 
245010e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
245110e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2452e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat);
2453365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool);
24545f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
24555f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
24565f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **);
24575f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **);
24585f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **);
24595f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **);
24605f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **);
24615f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **);
2462637a0070SStefano Zampini 
2463637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
2464637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
2465637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **);
2466637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **);
2467637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **);
2468637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **);
2469637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **);
2470637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **);
2471637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *);
2472d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *);
2473637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat);
24743d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *);
24752d1451d4SHong Zhang 
24762d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
24772d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
24789ae82921SPaul Mullowney #endif
24799ae82921SPaul Mullowney 
248047d993e7Ssuyashtn #ifdef PETSC_HAVE_HIP
248147d993e7Ssuyashtn /*E
24822ef1f0ffSBarry Smith     MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU)
248347d993e7Ssuyashtn     matrices.
248447d993e7Ssuyashtn 
24852ef1f0ffSBarry Smith     Values:
24862ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_CSR` - Compressed Sparse Row
24872ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_ELL` - Ellpack
24882ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format
248947d993e7Ssuyashtn 
249016a05f60SBarry Smith     Level: intermediate
249116a05f60SBarry Smith 
24921cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation`
249347d993e7Ssuyashtn E*/
249447d993e7Ssuyashtn 
249547d993e7Ssuyashtn typedef enum {
249647d993e7Ssuyashtn   MAT_HIPSPARSE_CSR,
249747d993e7Ssuyashtn   MAT_HIPSPARSE_ELL,
249847d993e7Ssuyashtn   MAT_HIPSPARSE_HYB
249947d993e7Ssuyashtn } MatHIPSPARSEStorageFormat;
250047d993e7Ssuyashtn 
250147d993e7Ssuyashtn /* these will be strings associated with enumerated type defined above */
250247d993e7Ssuyashtn PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[];
250347d993e7Ssuyashtn 
250447d993e7Ssuyashtn /*E
25052ef1f0ffSBarry Smith     MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU)
250647d993e7Ssuyashtn     matrices whose operation should use a particular storage format.
250747d993e7Ssuyashtn 
25082ef1f0ffSBarry Smith     Values:
25092ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_MULT_DIAG`    - sets the storage format for the diagonal matrix in the parallel `MatMult()`
25104cf0e950SBarry Smith .   `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()`
25112ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_MULT`         - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()`
25122ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_ALL`          - sets the storage format for all HIPSPARSE (GPU) matrices
25132ef1f0ffSBarry Smith 
251416a05f60SBarry Smith     Level: intermediate
251516a05f60SBarry Smith 
25161cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat`
251747d993e7Ssuyashtn E*/
251847d993e7Ssuyashtn typedef enum {
251947d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_DIAG,
252047d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_OFFDIAG,
252147d993e7Ssuyashtn   MAT_HIPSPARSE_MULT,
252247d993e7Ssuyashtn   MAT_HIPSPARSE_ALL
252347d993e7Ssuyashtn } MatHIPSPARSEFormatOperation;
252447d993e7Ssuyashtn 
252547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
252647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
252747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat);
252847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool);
252947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
253047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
253147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **);
253247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **);
253347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **);
253447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **);
253547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **);
253647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **);
253747d993e7Ssuyashtn 
253847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
253947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
254047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **);
254147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **);
254247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **);
254347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **);
254447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **);
254547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **);
254647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *);
254747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *);
254847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat);
25493d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *);
2550773bf0f6SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2551773bf0f6SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
255247d993e7Ssuyashtn #endif
255347d993e7Ssuyashtn 
2554d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL)
2555d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2556d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2557d67ff14aSKarl Rupp #endif
2558d67ff14aSKarl Rupp 
25594bf303faSJacob Faibussowitsch #if PetscDefined(HAVE_KOKKOS)
25604bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
25614bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
25624bf303faSJacob Faibussowitsch #endif
25634bf303faSJacob Faibussowitsch 
256454efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW)
2565014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec);
2566014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec);
25672a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *);
256854efbe56SHong Zhang #endif
256954efbe56SHong Zhang 
2570d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
2571d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2572d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt);
2573d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *);
2574d24d4204SJose E. Roman #endif
2575d24d4204SJose E. Roman 
2576014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *);
2577014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *);
2578014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]);
2579014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]);
2580014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***);
2581014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *);
258219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType);
2583014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]);
2584014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat);
2585d8588912SDave May 
25862ce66baaSPierre Jolivet PETSC_EXTERN PetscErrorCode MatFilter(Mat, PetscReal, PetscBool, PetscBool);
25872ce66baaSPierre Jolivet PETSC_DEPRECATED_FUNCTION(3, 20, 0, "MatFilter()", ) static inline PetscErrorCode MatChop(Mat A, PetscReal tol)
25882ce66baaSPierre Jolivet {
25892ce66baaSPierre Jolivet   return MatFilter(A, tol, PETSC_FALSE, PETSC_FALSE);
25902ce66baaSPierre Jolivet }
2591e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *);
25924325cce7SMatthew G Knepley 
2593b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **);
259453dd7562SDmitry Karpeev 
2595c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat);
2596c094ef40SMatthew G. Knepley 
259702218ef1SBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderMerge(Mat, Mat *);
2598539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *);
25991a2c6b5cSJunchao Zhang 
26007ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *);
260172833a62Smarkadams4 
2602e02fb3cdSMark Adams PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, PetscInt, PetscInt[], Mat *);
260358c11ad4SPierre Jolivet PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat, PetscBool);
2604ad6ad4e1SHansol  Suh 
2605d16ceb75SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *);
26063444e80cSBarry Smith 
26073444e80cSBarry Smith PETSC_EXTERN PetscErrorCode MatSetHPL(Mat, int);
26083444e80cSBarry Smith #define PETSCBMHPL "hpl"
2609