xref: /petsc/include/petscmat.h (revision d16ceb7590f23315f034853cec344faff90b289e)
12eac72dbSBarry Smith /*
22eac72dbSBarry Smith      Include file for the matrix component of PETSc
32eac72dbSBarry Smith */
426bd1501SBarry Smith #ifndef PETSCMAT_H
526bd1501SBarry Smith #define PETSCMAT_H
6ac09b921SBarry Smith 
72c8e378dSBarry Smith #include <petscvec.h>
82eac72dbSBarry Smith 
9ac09b921SBarry Smith /* SUBMANSEC = Mat */
10ac09b921SBarry Smith 
11d9274352SBarry Smith /*S
128f6c3df8SBarry Smith      Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without
138f6c3df8SBarry Smith            an explicit sparse representation (such as matrix-free operators)
142eac72dbSBarry Smith 
15d91e6319SBarry Smith    Level: beginner
16d91e6319SBarry Smith 
172ef1f0ffSBarry Smith    Note:
1816a05f60SBarry Smith    See [](doc_matrix), [](chapter_matrices) and `MatType` for available matrix types
192ef1f0ffSBarry Smith 
2016a05f60SBarry Smith .seealso: [](doc_matrix), [](chapter_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()`
21d9274352SBarry Smith S*/
22d9274352SBarry Smith typedef struct _p_Mat *Mat;
23d9274352SBarry Smith 
2476bdecfbSBarry Smith /*J
258f6c3df8SBarry Smith     MatType - String with the name of a PETSc matrix type
26d9274352SBarry Smith 
27d9274352SBarry Smith    Level: beginner
28d9274352SBarry Smith 
292ef1f0ffSBarry Smith    Note:
302ef1f0ffSBarry Smith    [](doc_matrix) for a table of available matrix types
312ef1f0ffSBarry Smith 
3216a05f60SBarry Smith .seealso: [](doc_matrix), [](chapter_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()`
3376bdecfbSBarry Smith J*/
3419fd82e9SBarry Smith typedef const char *MatType;
35273d9f13SBarry Smith #define MATSAME                      "same"
365a11e1b2SBarry Smith #define MATMAIJ                      "maij"
37273d9f13SBarry Smith #define MATSEQMAIJ                   "seqmaij"
38273d9f13SBarry Smith #define MATMPIMAIJ                   "mpimaij"
3949bd79ccSDebojyoti Ghosh #define MATKAIJ                      "kaij"
4049bd79ccSDebojyoti Ghosh #define MATSEQKAIJ                   "seqkaij"
4149bd79ccSDebojyoti Ghosh #define MATMPIKAIJ                   "mpikaij"
42273d9f13SBarry Smith #define MATIS                        "is"
435a11e1b2SBarry Smith #define MATAIJ                       "aij"
44273d9f13SBarry Smith #define MATSEQAIJ                    "seqaij"
45273d9f13SBarry Smith #define MATMPIAIJ                    "mpiaij"
465a11e1b2SBarry Smith #define MATAIJCRL                    "aijcrl"
475a11e1b2SBarry Smith #define MATSEQAIJCRL                 "seqaijcrl"
485a11e1b2SBarry Smith #define MATMPIAIJCRL                 "mpiaijcrl"
499ae82921SPaul Mullowney #define MATAIJCUSPARSE               "aijcusparse"
509ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE            "seqaijcusparse"
519ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE            "mpiaijcusparse"
5247d993e7Ssuyashtn #define MATAIJHIPSPARSE              "aijhipsparse"
5347d993e7Ssuyashtn #define MATSEQAIJHIPSPARSE           "seqaijhipsparse"
5447d993e7Ssuyashtn #define MATMPIAIJHIPSPARSE           "mpiaijhipsparse"
558c3ff71bSJunchao Zhang #define MATAIJKOKKOS                 "aijkokkos"
568c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS              "seqaijkokkos"
578c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS              "mpiaijkokkos"
58d67ff14aSKarl Rupp #define MATAIJVIENNACL               "aijviennacl"
59d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL            "seqaijviennacl"
60d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL            "mpiaijviennacl"
615a11e1b2SBarry Smith #define MATAIJPERM                   "aijperm"
625a11e1b2SBarry Smith #define MATSEQAIJPERM                "seqaijperm"
635a11e1b2SBarry Smith #define MATMPIAIJPERM                "mpiaijperm"
644dfdc2d9SRichard Tran Mills #define MATAIJSELL                   "aijsell"
654dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL                "seqaijsell"
664dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL                "mpiaijsell"
674a2a386eSRichard Tran Mills #define MATAIJMKL                    "aijmkl"
684a2a386eSRichard Tran Mills #define MATSEQAIJMKL                 "seqaijmkl"
694a2a386eSRichard Tran Mills #define MATMPIAIJMKL                 "mpiaijmkl"
70b5b72c8aSIrina Sokolova #define MATBAIJMKL                   "baijmkl"
71b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL                "seqbaijmkl"
72b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL                "mpibaijmkl"
73273d9f13SBarry Smith #define MATSHELL                     "shell"
74c1fff1c6SRichard Tran Mills #define MATCENTERING                 "centering"
755a11e1b2SBarry Smith #define MATDENSE                     "dense"
76637a0070SStefano Zampini #define MATDENSECUDA                 "densecuda"
7747d993e7Ssuyashtn #define MATDENSEHIP                  "densehip"
78209238afSKris Buschelman #define MATSEQDENSE                  "seqdense"
79bfc799aaSStefano Zampini #define MATSEQDENSECUDA              "seqdensecuda"
8047d993e7Ssuyashtn #define MATSEQDENSEHIP               "seqdensehip"
81273d9f13SBarry Smith #define MATMPIDENSE                  "mpidense"
82637a0070SStefano Zampini #define MATMPIDENSECUDA              "mpidensecuda"
8347d993e7Ssuyashtn #define MATMPIDENSEHIP               "mpidensehip"
84db31f6deSJed Brown #define MATELEMENTAL                 "elemental"
85d24d4204SJose E. Roman #define MATSCALAPACK                 "scalapack"
865a11e1b2SBarry Smith #define MATBAIJ                      "baij"
87273d9f13SBarry Smith #define MATSEQBAIJ                   "seqbaij"
88273d9f13SBarry Smith #define MATMPIBAIJ                   "mpibaij"
89273d9f13SBarry Smith #define MATMPIADJ                    "mpiadj"
905a11e1b2SBarry Smith #define MATSBAIJ                     "sbaij"
91273d9f13SBarry Smith #define MATSEQSBAIJ                  "seqsbaij"
92273d9f13SBarry Smith #define MATMPISBAIJ                  "mpisbaij"
93cebc7f6cSBarry Smith #define MATMFFD                      "mffd"
94c8a8475eSBarry Smith #define MATNORMAL                    "normal"
95c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN           "normalh"
96ab92ecdeSBarry Smith #define MATLRC                       "lrc"
972a6744ebSBarry Smith #define MATSCATTER                   "scatter"
98421e10b8SBarry Smith #define MATBLOCKMAT                  "blockmat"
99793850ffSBarry Smith #define MATCOMPOSITE                 "composite"
1001f8c7532SHong Zhang #define MATFFT                       "fft"
1011f8c7532SHong Zhang #define MATFFTW                      "fftw"
102e133240eSMatthew G Knepley #define MATSEQCUFFT                  "seqcufft"
10347d993e7Ssuyashtn #define MATSEQHIPFFT                 "seqhipfft"
104013e2dc7SBarry Smith #define MATTRANSPOSEMAT              PETSC_DEPRECATED_MACRO("GCC warning \"MATTRANSPOSEMAT macro is deprecated use MATTRANSPOSEVIRTUAL (since version 3.18)\"") "transpose"
105013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL          "transpose"
106013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose"
10772ca8751SBarry Smith #define MATSCHURCOMPLEMENT           "schurcomplement"
1081d6018f0SLisandro Dalcin #define MATPYTHON                    "python"
10963c07aadSStefano Zampini #define MATHYPRE                     "hypre"
110f91d8e95SBarry Smith #define MATHYPRESTRUCT               "hyprestruct"
111a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT              "hypresstruct"
112ee1cef2cSJed Brown #define MATSUBMATRIX                 "submatrix"
1132c0dbf93SJed Brown #define MATLOCALREF                  "localref"
114d8588912SDave May #define MATNEST                      "nest"
115c094ef40SMatthew G. Knepley #define MATPREALLOCATOR              "preallocator"
116d4002b98SHong Zhang #define MATSELL                      "sell"
117d4002b98SHong Zhang #define MATSEQSELL                   "seqsell"
118d4002b98SHong Zhang #define MATMPISELL                   "mpisell"
1192d1451d4SHong Zhang #define MATSELLCUDA                  "sellcuda"
1202d1451d4SHong Zhang #define MATSEQSELLCUDA               "seqsellcuda"
1212d1451d4SHong Zhang #define MATMPISELLCUDA               "mpisellcuda"
122a3b2e22bSHong Zhang #define MATDUMMY                     "dummy"
123cd929ea3SAlp Dener #define MATLMVM                      "lmvm"
12478e4361aSAlp Dener #define MATLMVMDFP                   "lmvmdfp"
12578e4361aSAlp Dener #define MATLMVMBFGS                  "lmvmbfgs"
12678e4361aSAlp Dener #define MATLMVMSR1                   "lmvmsr1"
127864588a7SAlp Dener #define MATLMVMBROYDEN               "lmvmbroyden"
128864588a7SAlp Dener #define MATLMVMBADBROYDEN            "lmvmbadbroyden"
129864588a7SAlp Dener #define MATLMVMSYMBROYDEN            "lmvmsymbroyden"
130864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN         "lmvmsymbadbroyden"
131864588a7SAlp Dener #define MATLMVMDIAGBROYDEN           "lmvmdiagbroyden"
1323423f386SBarry Smith #define MATCONSTANTDIAGONAL          "constantdiagonal"
133c7a4214aSPierre Jolivet #define MATHTOOL                     "htool"
13453022affSStefano Zampini #define MATH2OPUS                    "h2opus"
135773941d6SBarry Smith 
13676bdecfbSBarry Smith /*J
13716a05f60SBarry Smith     MatSolverType - String with the name of a PETSc factorization based matrix solver type.
1389989ab13SBarry Smith 
139c2b89b5dSBarry Smith     For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc
1409989ab13SBarry Smith 
1419989ab13SBarry Smith    Level: beginner
1429989ab13SBarry Smith 
1432ef1f0ffSBarry Smith    Note:
14416a05f60SBarry Smith    `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as
14516a05f60SBarry Smith    a ./configure option to install them
146c7ccbb75SBarry Smith 
1472ef1f0ffSBarry Smith .seealso: [](sec_matfactor), [](chapter_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()`
14876bdecfbSBarry Smith J*/
149ea799195SBarry Smith typedef const char *MatSolverType;
1502692d6eeSBarry Smith #define MATSOLVERSUPERLU      "superlu"
1512692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST "superlu_dist"
15208f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK    "strumpack"
1532692d6eeSBarry Smith #define MATSOLVERUMFPACK      "umfpack"
15420db9a53SJed Brown #define MATSOLVERCHOLMOD      "cholmod"
155d89f5e7aSBarry Smith #define MATSOLVERKLU          "klu"
156d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL    "elemental"
157d24d4204SJose E. Roman #define MATSOLVERSCALAPACK    "scalapack"
1582692d6eeSBarry Smith #define MATSOLVERESSL         "essl"
1592692d6eeSBarry Smith #define MATSOLVERLUSOL        "lusol"
1602692d6eeSBarry Smith #define MATSOLVERMUMPS        "mumps"
161d615f992SSatish Balay #define MATSOLVERMKL_PARDISO  "mkl_pardiso"
162d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO "mkl_cpardiso"
1632692d6eeSBarry Smith #define MATSOLVERPASTIX       "pastix"
1642692d6eeSBarry Smith #define MATSOLVERMATLAB       "matlab"
1652692d6eeSBarry Smith #define MATSOLVERPETSC        "petsc"
1662692d6eeSBarry Smith #define MATSOLVERBAS          "bas"
1679ae82921SPaul Mullowney #define MATSOLVERCUSPARSE     "cusparse"
168bfc799aaSStefano Zampini #define MATSOLVERCUDA         "cuda"
16947d993e7Ssuyashtn #define MATSOLVERHIPSPARSE    "hipsparse"
17047d993e7Ssuyashtn #define MATSOLVERHIP          "hip"
171930e68a5SMark Adams #define MATSOLVERKOKKOS       "kokkos"
172a2fc1e05SToby Isaac #define MATSOLVERSPQR         "spqr"
173c0cdd4a1SDahai Guo 
174b24902e0SBarry Smith /*E
175b24902e0SBarry Smith     MatFactorType - indicates what type of factorization is requested
176b24902e0SBarry Smith 
1772ef1f0ffSBarry Smith     Values:
1782ef1f0ffSBarry Smith +  `MAT_FACTOR_LU` - LU factorization
1792ef1f0ffSBarry Smith .  `MAT_FACTOR_CHOLESKY` - Cholesky factorization
1802ef1f0ffSBarry Smith .  `MAT_FACTOR_ILU` - ILU factorization
1812ef1f0ffSBarry Smith .  `MAT_FACTOR_ICC` - incomplete Cholesky factorization
1822ef1f0ffSBarry Smith .  `MAT_FACTOR_ILUDT` - ILU factorization with drop tolerance
1832ef1f0ffSBarry Smith -  `MAT_FACTOR_QR` - QR factorization
184b24902e0SBarry Smith 
18516a05f60SBarry Smith     Level: beginner
18616a05f60SBarry Smith 
1872ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()`
188b24902e0SBarry Smith E*/
1899371c9d4SSatish Balay typedef enum {
1909371c9d4SSatish Balay   MAT_FACTOR_NONE,
1919371c9d4SSatish Balay   MAT_FACTOR_LU,
1929371c9d4SSatish Balay   MAT_FACTOR_CHOLESKY,
1939371c9d4SSatish Balay   MAT_FACTOR_ILU,
1949371c9d4SSatish Balay   MAT_FACTOR_ICC,
1959371c9d4SSatish Balay   MAT_FACTOR_ILUDT,
1969371c9d4SSatish Balay   MAT_FACTOR_QR,
1979371c9d4SSatish Balay   MAT_FACTOR_NUM_TYPES
1989371c9d4SSatish Balay } MatFactorType;
199014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[];
200e92e720dSBarry Smith 
201ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *);
202ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *);
203f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *);
204d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatFactorGetCanUseOrdering() (since version 3.15)") static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b)
205d71ae5a4SJacob Faibussowitsch {
2069371c9d4SSatish Balay   return MatFactorGetCanUseOrdering(A, b);
2079371c9d4SSatish Balay }
208ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *);
209014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *);
2107abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType);
2112430ea28SJose E. Roman PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatSolverFunction)(Mat, MatFactorType, Mat *);
2122430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode            MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFunction);
2132430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode            MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFunction *);
21425ef9dfeSBarry Smith typedef MatSolverType MatSolverPackage PETSC_DEPRECATED_TYPEDEF("Use MatSolverType (since version 3.9)");
215d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSolverTypeRegister() (since version 3.9)") static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFunction f)
216d71ae5a4SJacob Faibussowitsch {
2179371c9d4SSatish Balay   return MatSolverTypeRegister(stype, mtype, ftype, f);
2189371c9d4SSatish Balay }
219d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSolverTypeGet() (since version 3.9)") static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFunction *f)
220d71ae5a4SJacob Faibussowitsch {
2219371c9d4SSatish Balay   return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f);
2229371c9d4SSatish Balay }
2239989ab13SBarry Smith 
2244222ddf1SHong Zhang /*E
2254222ddf1SHong Zhang     MatProductType - indicates what type of matrix product is requested
2264222ddf1SHong Zhang 
2272ef1f0ffSBarry Smith     Values:
2282ef1f0ffSBarry Smith +  `MATPRODUCT_AB` - product of two matrices
2292ef1f0ffSBarry Smith .  `MATPRODUCT_AtB` - product of the transpose of a given matrix with a matrix
2302ef1f0ffSBarry Smith .  `MATPRODUCT_ABt` - product of a matrix with the transpose of another given matrix
2312ef1f0ffSBarry Smith .  `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself
2322ef1f0ffSBarry Smith .  `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix
2332ef1f0ffSBarry Smith -  `MATPRODUCT_ABC` - the product of three matrices
2342ef1f0ffSBarry Smith 
23516a05f60SBarry Smith     Level: beginner
23616a05f60SBarry Smith 
2372ef1f0ffSBarry Smith .seealso: [](sec_matmatproduct), [](chapter_matrices), `MatProductSetType()`
2384222ddf1SHong Zhang E*/
2399371c9d4SSatish Balay typedef enum {
2409371c9d4SSatish Balay   MATPRODUCT_UNSPECIFIED = 0,
2419371c9d4SSatish Balay   MATPRODUCT_AB,
2429371c9d4SSatish Balay   MATPRODUCT_AtB,
2439371c9d4SSatish Balay   MATPRODUCT_ABt,
2449371c9d4SSatish Balay   MATPRODUCT_PtAP,
2459371c9d4SSatish Balay   MATPRODUCT_RARt,
2469371c9d4SSatish Balay   MATPRODUCT_ABC
2479371c9d4SSatish Balay } MatProductType;
248544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[];
2494222ddf1SHong Zhang 
2504222ddf1SHong Zhang /*J
2514222ddf1SHong Zhang     MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation
2524222ddf1SHong Zhang 
2534222ddf1SHong Zhang    Level: beginner
2544222ddf1SHong Zhang 
2552ef1f0ffSBarry Smith .seealso: [](sec_matmatproduct), [](chapter_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType`
2564222ddf1SHong Zhang J*/
2574222ddf1SHong Zhang typedef const char *MatProductAlgorithm;
2583e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT         "default"
2593e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED          "sorted"
2603e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE        "scalable"
2613e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST    "scalable_fast"
2623e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP            "heap"
2633e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP           "btheap"
2643e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED     "llcondensed"
2653e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE        "rowmerge"
2663e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT    "outerproduct"
2673e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB             "at*b"
2683e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP             "rap"
2693e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE     "nonscalable"
2703e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI          "seqmpi"
2713e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND         "backend"
2723e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING     "overlapping"
2733e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED          "merged"
2743e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE       "allatonce"
2753e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged"
2763e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV      "allgatherv"
2773e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC          "cyclic"
2783e662e0bSHong Zhang #if defined(PETSC_HAVE_HYPRE)
2793e662e0bSHong Zhang   #define MATPRODUCTALGORITHMHYPRE "hypre"
2803e662e0bSHong Zhang #endif
2814222ddf1SHong Zhang 
2824222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *);
2834222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat);
2844222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType);
2854222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm);
2864222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal);
2874222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat);
2884222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat);
2894222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat);
2904222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat);
2914417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat);
2926718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer);
293c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *);
294c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *);
2954222ddf1SHong Zhang 
296c06d978dSMatthew Knepley /* Logging support */
2970700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */
298014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID;
299335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID;
300014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID;
301014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID;
302014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID;
303014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID;
304014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID;
305014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID;
306c06d978dSMatthew Knepley 
307ceb03754SKris Buschelman /*E
3082ef1f0ffSBarry Smith     MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions
309cf37664fSBarry Smith      are to be reused to store the new matrix values.
310cf37664fSBarry Smith 
3112ef1f0ffSBarry Smith    Values:
3122ef1f0ffSBarry Smith +  `MAT_INITIAL_MATRIX` - create a new matrix
3132ef1f0ffSBarry Smith .  `MAT_REUSE_MATRIX` - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX`
3142ef1f0ffSBarry Smith .  `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions)
3152ef1f0ffSBarry Smith -  `MAT_IGNORE_MATRIX` - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions)
316ceb03754SKris Buschelman 
317ceb03754SKris Buschelman     Level: beginner
318ceb03754SKris Buschelman 
3192ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()`
320ceb03754SKris Buschelman E*/
3219371c9d4SSatish Balay typedef enum {
3229371c9d4SSatish Balay   MAT_INITIAL_MATRIX,
3239371c9d4SSatish Balay   MAT_REUSE_MATRIX,
3249371c9d4SSatish Balay   MAT_IGNORE_MATRIX,
3259371c9d4SSatish Balay   MAT_INPLACE_MATRIX
3269371c9d4SSatish Balay } MatReuse;
327ceb03754SKris Buschelman 
3285494a064SHong Zhang /*E
3292ef1f0ffSBarry Smith     MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()`
3302ef1f0ffSBarry Smith      include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`.
3315494a064SHong Zhang 
3322ef1f0ffSBarry Smith     Level: developer
3335494a064SHong Zhang 
3342ef1f0ffSBarry Smith     Values:
3352ef1f0ffSBarry Smith +  `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values
3362ef1f0ffSBarry Smith -  `MAT_GET_VALUES` - copy the matrix values
3372ef1f0ffSBarry Smith 
3382ef1f0ffSBarry Smith     Developer Note:
3392ef1f0ffSBarry Smith     Why is not just a boolean used for this information?
3402ef1f0ffSBarry Smith 
3412ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()`
3425494a064SHong Zhang E*/
3439371c9d4SSatish Balay typedef enum {
3449371c9d4SSatish Balay   MAT_DO_NOT_GET_VALUES,
3459371c9d4SSatish Balay   MAT_GET_VALUES
3469371c9d4SSatish Balay } MatCreateSubMatrixOption;
3475494a064SHong Zhang 
348607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void);
349c06d978dSMatthew Knepley 
350014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *);
351014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt);
35219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType);
3530d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *);
3540d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType);
355014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat);
356fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]);
357bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat));
35823bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]);
359014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]);
36026cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]);
36126cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]);
362014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]);
363014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]);
36484d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool);
365f69a0ea3SMatthew Knepley 
366140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList;
367140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList;
368140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList;
36928988994SBarry Smith 
3703b224e63SBarry Smith /*E
371aa6c7ce3SBarry Smith     MatStructure - Indicates if two matrices have the same nonzero structure
3723b224e63SBarry Smith 
3732ef1f0ffSBarry Smith    Values:
3742ef1f0ffSBarry Smith +  `SAME_NONZERO_PATTERN`  - the two matrices have identical nonzero patterns
3752ef1f0ffSBarry Smith .  `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns
3762ef1f0ffSBarry Smith .  `SUBSET_NONZERO_PATTERN` - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix
3772ef1f0ffSBarry Smith -  `UNKNOWN_NONZERO_PATTERN` - there is no known relationship between the nonzero patterns. In this case the implementations
3782ef1f0ffSBarry Smith                                may try to detect a relationship to optimize the operation
379531d0c6aSBarry Smith 
38016a05f60SBarry Smith     Level: beginner
38116a05f60SBarry Smith 
3822ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()`
3833b224e63SBarry Smith E*/
3849371c9d4SSatish Balay typedef enum {
3859371c9d4SSatish Balay   DIFFERENT_NONZERO_PATTERN,
3869371c9d4SSatish Balay   SUBSET_NONZERO_PATTERN,
3879371c9d4SSatish Balay   SAME_NONZERO_PATTERN,
3889371c9d4SSatish Balay   UNKNOWN_NONZERO_PATTERN
3899371c9d4SSatish Balay } MatStructure;
390d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[];
3913b224e63SBarry Smith 
3929779e05dSSatish Balay #if defined                 PETSC_HAVE_MKL_SPARSE
393ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
394ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
39580095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
396ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
39780095d54SIrina Sokolova #endif
398cd929ea3SAlp Dener 
399d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
400d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
401d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]);
402d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
40307e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *);
40407e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *);
40507e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *);
40607e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt);
407b921024eSHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *);
40880095d54SIrina Sokolova 
409014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
410014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
411014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
412014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
413014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4148f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4156a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]);
416014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *);
4173b00a383SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *);
4183b00a383SHong Zhang 
419014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
420014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
421014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4227e8381f9SStefano Zampini 
423e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]);
42482a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]);
4257e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode);
426d21a29f3SJed Brown 
427014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *);
428014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
429d21a29f3SJed Brown 
430014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
431014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
43238f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
433014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4344cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]);
435dfb205c3SBarry Smith 
436014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *);
437c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *);
438014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *);
439c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *);
440986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *);
441267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *);
442c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *);
443014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
444014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
445c0cdd4a1SDahai Guo 
446014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *);
447014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter);
448014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *);
449014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *);
450014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat);
451014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat);
4529371c9d4SSatish Balay typedef enum {
4539371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_RIGHT,
4549371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_LEFT
4559371c9d4SSatish Balay } MatCompositeMergeType;
4568c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType);
457014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *);
4589371c9d4SSatish Balay typedef enum {
4599371c9d4SSatish Balay   MAT_COMPOSITE_ADDITIVE,
4609371c9d4SSatish Balay   MAT_COMPOSITE_MULTIPLICATIVE
4619371c9d4SSatish Balay } MatCompositeType;
462014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType);
4636dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *);
4643b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure);
4653b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *);
4666d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *);
4678b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *);
46803049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *);
4696d7c1e57SBarry Smith 
47019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *);
471014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *);
472dedccee8SHong Zhang 
473014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *);
4748060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *);
475d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *);
47606511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *);
477fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *);
47865f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *);
47954e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *);
48054e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS);
481014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *);
4823423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *);
4831472f72bSBarry Smith 
484978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE)
485d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
486978814f1SStefano Zampini #endif
487978814f1SStefano Zampini 
488014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]);
489ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]);
4901d6018f0SLisandro Dalcin 
491846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat);
492014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat);
493014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *);
494e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *);
49521c89e3eSBarry Smith 
496014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat);
497014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat);
498014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat);
499014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *);
500014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *);
501713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **);
5020da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *);
503479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat);
5048a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *);
50599cafbc1SBarry Smith 
506014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
5078a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode);
508014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
509014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]);
510014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]);
511014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]);
51273a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom);
51384cb2905SBarry Smith 
5142ef4de8bSBarry Smith /*S
5152ef1f0ffSBarry Smith      MatStencil - Data structure (C struct) for storing information about rows and
5162ef1f0ffSBarry Smith         columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()`
51762ef0227SBarry Smith 
5182ef1f0ffSBarry Smith    Level: beginner
5192ef1f0ffSBarry Smith 
5202ef1f0ffSBarry Smith    Notes:
52162ef0227SBarry Smith    The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored).
52287497f52SBarry Smith    The c represents the the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored.
52362ef0227SBarry Smith 
52487497f52SBarry Smith    For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`.
525be479b30SJed Brown 
5262ef1f0ffSBarry Smith    For staggered grids, see `DMStagStencil`
5272ef4de8bSBarry Smith 
5282ef1f0ffSBarry Smith    Fortran Note:
5292ef1f0ffSBarry Smith    See `MatSetValuesStencil()` for details.
5302ef4de8bSBarry Smith 
5312ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`,
5322ef1f0ffSBarry Smith           `DMStagStencil`
5332ef4de8bSBarry Smith S*/
534435da068SBarry Smith typedef struct {
535c1ac3661SBarry Smith   PetscInt k, j, i, c;
536435da068SBarry Smith } MatStencil;
5372ef4de8bSBarry Smith 
538014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
539014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
540014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt);
541435da068SBarry Smith 
542d91e6319SBarry Smith /*E
5432ef1f0ffSBarry Smith     MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use
544d91e6319SBarry Smith 
5452ef1f0ffSBarry Smith     Values:
5462ef1f0ffSBarry Smith +   `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix
5472ef1f0ffSBarry Smith -   `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted
5482ef1f0ffSBarry Smith 
54916a05f60SBarry Smith     Level: beginner
55016a05f60SBarry Smith 
5512ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()`
552d91e6319SBarry Smith E*/
5539371c9d4SSatish Balay typedef enum {
5549371c9d4SSatish Balay   MAT_FLUSH_ASSEMBLY = 1,
5559371c9d4SSatish Balay   MAT_FINAL_ASSEMBLY = 0
5569371c9d4SSatish Balay } MatAssemblyType;
557014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType);
558014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType);
559014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *);
5604f9c727eSBarry Smith 
561d91e6319SBarry Smith /*E
5622ef1f0ffSBarry Smith     MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage
563d91e6319SBarry Smith 
564d91e6319SBarry Smith     Level: beginner
565d91e6319SBarry Smith 
5662ef1f0ffSBarry Smith    Note:
5672ef1f0ffSBarry Smith    See `MatSetOption()` for the use of the options
5682ef1f0ffSBarry Smith 
5692ef1f0ffSBarry Smith    Developer Note:
57095452b02SPatrick Sanan    Entries that are negative need not be called collectively by all processes.
571382164b0SBarry Smith 
5722ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatSetOption()`
573d91e6319SBarry Smith E*/
5749371c9d4SSatish Balay typedef enum {
5759371c9d4SSatish Balay   MAT_OPTION_MIN                  = -3,
576c5e4d11fSDmitry Karpeev   MAT_UNUSED_NONZERO_LOCATION_ERR = -2,
57792d4d306SBarry Smith   MAT_ROW_ORIENTED                = -1,
578382164b0SBarry Smith   MAT_SYMMETRIC                   = 1,
579382164b0SBarry Smith   MAT_STRUCTURALLY_SYMMETRIC      = 2,
5808c78258cSHong Zhang   MAT_FORCE_DIAGONAL_ENTRIES      = 3,
581382164b0SBarry Smith   MAT_IGNORE_OFF_PROC_ENTRIES     = 4,
582382164b0SBarry Smith   MAT_USE_HASH_TABLE              = 5,
583382164b0SBarry Smith   MAT_KEEP_NONZERO_PATTERN        = 6,
584382164b0SBarry Smith   MAT_IGNORE_ZERO_ENTRIES         = 7,
585382164b0SBarry Smith   MAT_USE_INODES                  = 8,
586382164b0SBarry Smith   MAT_HERMITIAN                   = 9,
587382164b0SBarry Smith   MAT_SYMMETRY_ETERNAL            = 10,
588c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_LOCATION_ERR    = 11,
589382164b0SBarry Smith   MAT_IGNORE_LOWER_TRIANGULAR     = 12,
590382164b0SBarry Smith   MAT_ERROR_LOWER_TRIANGULAR      = 13,
591382164b0SBarry Smith   MAT_GETROW_UPPERTRIANGULAR      = 14,
592382164b0SBarry Smith   MAT_SPD                         = 15,
59392d4d306SBarry Smith   MAT_NO_OFF_PROC_ZERO_ROWS       = 16,
59492d4d306SBarry Smith   MAT_NO_OFF_PROC_ENTRIES         = 17,
59592d4d306SBarry Smith   MAT_NEW_NONZERO_LOCATIONS       = 18,
596c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_ALLOCATION_ERR  = 19,
597c5e4d11fSDmitry Karpeev   MAT_SUBSET_OFF_PROC_ENTRIES     = 20,
598c10200c1SHong Zhang   MAT_SUBMAT_SINGLEIS             = 21,
599957cac9fSHong Zhang   MAT_STRUCTURE_ONLY              = 22,
600071fcb05SBarry Smith   MAT_SORTED_FULL                 = 23,
6011a2c6b5cSJunchao Zhang   MAT_FORM_EXPLICIT_TRANSPOSE     = 24,
602b94d7dedSBarry Smith   MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25,
603b94d7dedSBarry Smith   MAT_SPD_ETERNAL                 = 26,
6049371c9d4SSatish Balay   MAT_OPTION_MAX                  = 27
6059371c9d4SSatish Balay } MatOption;
606e057df02SPaul Mullowney 
6070f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions;
608014dd563SJed Brown PETSC_EXTERN PetscErrorCode     MatSetOption(Mat, MatOption, PetscBool);
6097d68702bSBarry Smith PETSC_EXTERN PetscErrorCode     MatGetOption(Mat, MatOption, PetscBool *);
610856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode     MatPropagateSymmetryOptions(Mat, Mat);
61119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode     MatGetType(Mat, MatType *);
61284cb2905SBarry Smith 
613014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
614014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
615014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
616014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRowUpperTriangular(Mat);
617014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRowUpperTriangular(Mat);
618014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetColumnVector(Mat, Vec, PetscInt);
6198c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArray(Mat, PetscScalar *[]);
6208f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]);
621d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]);
6228c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArray(Mat, PetscScalar *[]);
6238f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]);
624d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]);
62521e72a00SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *);
626bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
6274099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetType(Mat, MatType);
628ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode    MatSeqAIJKron(Mat, Mat, MatReuse, Mat *);
629388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode    MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *));
6304099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList;
631cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJGetArray(Mat, PetscScalar *[]);
632cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJRestoreArray(Mat, PetscScalar *[]);
6338397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJGetArray(Mat, PetscScalar *[]);
6348397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]);
6358c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArray(Mat, PetscScalar *[]);
6368c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArray(Mat, PetscScalar *[]);
637d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDensePlaceArray(Mat, const PetscScalar[]);
638d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseReplaceArray(Mat, const PetscScalar[]);
639d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseResetArray(Mat);
6408572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArrayRead(Mat, const PetscScalar *[]);
6418572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayRead(Mat, const PetscScalar *[]);
6426947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWrite(Mat, PetscScalar *[]);
6436947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWrite(Mat, PetscScalar *[]);
644cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *);
645cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]);
646cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *);
647cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]);
648cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *);
649cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]);
650014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSize(Mat, PetscInt *);
651014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSize(Mat, PetscInt);
652014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSizes(Mat, PetscInt *, PetscInt *);
653014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizes(Mat, PetscInt, PetscInt);
65433d57670SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizesFromMats(Mat, Mat, Mat);
6550da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode    MatSetVariableBlockSizes(Mat, PetscInt, PetscInt *);
6560da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode    MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt **);
6570da83c2eSBarry Smith 
65886aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]);
65986aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]);
6606947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *);
6616947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *);
6626947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *);
6636947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *);
6646947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *);
6656947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *);
666a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
6675ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *);
6681620fd73SBarry Smith 
669014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec);
670014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec);
671014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec);
672014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec);
673014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec);
674014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *);
675014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *);
676014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec);
677014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec);
678014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat);
679bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat);
680eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat);
681f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec);
682f5edf698SHong Zhang 
683d91e6319SBarry Smith /*E
684d91e6319SBarry Smith     MatDuplicateOption - Indicates if a duplicated sparse matrix should have
685d91e6319SBarry Smith   its numerical values copied over or just its nonzero structure.
686d91e6319SBarry Smith 
6872ef1f0ffSBarry Smith     Values:
6882ef1f0ffSBarry Smith +   `MAT_DO_NOT_COPY_VALUES`    - Create a matrix using the same nonzero pattern as the original matrix,
6892ef1f0ffSBarry Smith                                with zeros for the numerical values
6902ef1f0ffSBarry Smith .   `MAT_COPY_VALUES`           - Create a matrix with the same nonzero pattern as the original matrix
6912ef1f0ffSBarry Smith                                and with the same numerical values.
6922ef1f0ffSBarry Smith -   `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix
6932ef1f0ffSBarry Smith                                and does not copy it, using zeros for the numerical values. The parent and
6942ef1f0ffSBarry Smith                                child matrices will share their index (i and j) arrays, and you cannot
6952ef1f0ffSBarry Smith                                insert new nonzero entries into either matrix
6960018da39SRichard Tran Mills 
69716a05f60SBarry Smith     Level: beginner
69816a05f60SBarry Smith 
69987497f52SBarry Smith   Note:
70087497f52SBarry Smith   Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in
70187497f52SBarry Smith   this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified.
70270dcbbb9SBarry Smith 
7032ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatDuplicate()`
704d91e6319SBarry Smith E*/
7059371c9d4SSatish Balay typedef enum {
7069371c9d4SSatish Balay   MAT_DO_NOT_COPY_VALUES,
7079371c9d4SSatish Balay   MAT_COPY_VALUES,
7089371c9d4SSatish Balay   MAT_SHARE_NONZERO_PATTERN
7099371c9d4SSatish Balay } MatDuplicateOption;
7102e8a6d31SBarry Smith 
71119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *);
712014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *);
71394a9d846SBarry Smith 
714014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure);
715014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer);
716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *);
717014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *);
718014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *);
719014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *);
720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *);
721b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *);
722b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *);
723014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *);
724014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer);
7257b80b807SBarry Smith 
7261a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7271a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7281a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7291a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
730d4fbbf0eSBarry Smith 
731d91e6319SBarry Smith /*S
73287497f52SBarry Smith      MatInfo - Context of matrix information, used with `MatGetInfo()`
733d91e6319SBarry Smith 
734d91e6319SBarry Smith    Level: intermediate
735d91e6319SBarry Smith 
7362ef1f0ffSBarry Smith    Fortran Note:
7372ef1f0ffSBarry Smith    Information is stored as a double-precision array of dimension `MAT_INFO_SIZE`
7382ef1f0ffSBarry Smith 
7392ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatGetInfo()`, `MatInfoType`
740d91e6319SBarry Smith S*/
7414e220ebcSLois Curfman McInnes typedef struct {
742b0a32e0cSBarry Smith   PetscLogDouble block_size;                          /* block size */
743b0a32e0cSBarry Smith   PetscLogDouble nz_allocated, nz_used, nz_unneeded;  /* number of nonzeros */
744b0a32e0cSBarry Smith   PetscLogDouble memory;                              /* memory allocated */
745b0a32e0cSBarry Smith   PetscLogDouble assemblies;                          /* number of matrix assemblies called */
746b0a32e0cSBarry Smith   PetscLogDouble mallocs;                             /* number of mallocs during MatSetValues() */
747b0a32e0cSBarry Smith   PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */
748b0a32e0cSBarry Smith   PetscLogDouble factor_mallocs;                      /* number of mallocs during factorization */
7494e220ebcSLois Curfman McInnes } MatInfo;
7504e220ebcSLois Curfman McInnes 
751d9274352SBarry Smith /*E
752d9274352SBarry Smith     MatInfoType - Indicates if you want information about the local part of the matrix,
753d9274352SBarry Smith      the entire parallel matrix or the maximum over all the local parts.
754d9274352SBarry Smith 
7552ef1f0ffSBarry Smith     Values:
7562ef1f0ffSBarry Smith +   `MAT_LOCAL` - values for each MPI process part of the matrix
7572ef1f0ffSBarry Smith .   `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes
7582ef1f0ffSBarry Smith -   `MAT_GLOBAL_SUM` - sum of each value over all MPI processes
759d9274352SBarry Smith 
76016a05f60SBarry Smith     Level: beginner
76116a05f60SBarry Smith 
7622ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatGetInfo()`, `MatInfo`
763d9274352SBarry Smith E*/
7649371c9d4SSatish Balay typedef enum {
7659371c9d4SSatish Balay   MAT_LOCAL      = 1,
7669371c9d4SSatish Balay   MAT_GLOBAL_MAX = 2,
7679371c9d4SSatish Balay   MAT_GLOBAL_SUM = 3
7689371c9d4SSatish Balay } MatInfoType;
769014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *);
770014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec);
771014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]);
772014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]);
773014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]);
774014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]);
775014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec);
776014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *);
7777fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *);
7787fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat);
779014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *);
780014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *);
781014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec);
782014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode);
783a52676ecSHong Zhang 
784014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *);
785014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *);
786014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *);
787014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
788014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
789e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
790e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
791a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
792a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
793cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
7944222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
795447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
79686919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *);
7977b80b807SBarry Smith 
798014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *);
799014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *);
800857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *);
801857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *);
802857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *);
803857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *);
804857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *);
805857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *);
806857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *);
807014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat);
8081b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat);
809014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
810014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec);
811014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
812014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
813014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
814014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec);
8157b80b807SBarry Smith 
816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *);
817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *);
818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *);
819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **);
820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *);
821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **);
822566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *);
8235ef9f2a5SBarry Smith 
8247dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
825d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatrices() (since version 3.8)") static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
826d71ae5a4SJacob Faibussowitsch {
8279371c9d4SSatish Balay   return MatCreateSubMatrices(mat, n, irow, icol, scall, submat);
8289371c9d4SSatish Balay }
8297dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
830d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatricesMPI() (since version 3.8)") static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
831d71ae5a4SJacob Faibussowitsch {
8329371c9d4SSatish Balay   return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat);
8339371c9d4SSatish Balay }
834014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]);
835df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]);
8367dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *);
837d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatrix() (since version 3.8)") static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat)
838d71ae5a4SJacob Faibussowitsch {
8399371c9d4SSatish Balay   return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat);
8409371c9d4SSatish Balay }
841014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *);
842014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *);
843014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *);
844014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *);
8457b80b807SBarry Smith 
846014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *);
847014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *);
848014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat);
849014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *);
8508a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *);
851014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
852ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *);
853f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *);
854014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *);
855014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]);
8568efafbd8SBarry Smith 
857014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt);
858aa1e27eaSFande Kong PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov);
859d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool);
8607b80b807SBarry Smith 
861014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
86222440eb1SKris Buschelman 
8637bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
8642df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
8657bab7c10SHong Zhang 
866014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *);
867014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *);
86822440eb1SKris Buschelman 
869014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
870014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *);
871bc011b1eSHong Zhang 
872014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure);
873014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure);
8741c741599SHong Zhang 
875014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar);
876014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar);
8777b80b807SBarry Smith 
878014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping);
879014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
880a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *);
88181fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout);
882014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
883014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
884014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
885014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
886e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
887014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
888014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
889052efed2SBarry Smith 
890014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt);
891014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *);
89290f02eecSBarry Smith 
893014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec);
894014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec);
895014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec);
89630b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *);
89730b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *);
89830b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *);
8992a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *);
900d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateVecs() (since version 3.6)") static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y)
901d71ae5a4SJacob Faibussowitsch {
9029371c9d4SSatish Balay   return MatCreateVecs(mat, x, y);
9039371c9d4SSatish Balay }
90453cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *);
905014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *);
906014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *);
9073a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *);
9089c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *);
909bd481603SBarry Smith 
910bd481603SBarry Smith /*MC
9111620fd73SBarry Smith    MatSetValue - Set a single entry into a matrix.
9121620fd73SBarry Smith 
913e1c5b2e2SJose E. Roman    This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()`
914e1c5b2e2SJose E. Roman    MUST be called after all calls to `MatSetValue()` have been completed.
9151620fd73SBarry Smith 
916a9834a7dSSatish Balay    Synopsis:
917a9834a7dSSatish Balay      #include <petscmat.h>
918e1c5b2e2SJose E. Roman      PetscErrorCode MatSetValue(Mat m,PetscInt i,PetscInt j,PetscScalar va,InsertMode mode)
919e1c5b2e2SJose E. Roman 
920e1c5b2e2SJose E. Roman    Not Collective
921a9834a7dSSatish Balay 
9221620fd73SBarry Smith    Input Parameters:
9231620fd73SBarry Smith +  m - the matrix
92416a05f60SBarry Smith .  i - the row location of the entry
92516a05f60SBarry Smith .  j - the column location of the entry
92616a05f60SBarry Smith .  va - the value to insert
92787497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
9281620fd73SBarry Smith 
9291620fd73SBarry Smith    Level: beginner
9301620fd73SBarry Smith 
9312ef1f0ffSBarry Smith    Note:
9322ef1f0ffSBarry Smith    For efficiency one should use `MatSetValues()` and set several values simultaneously.
9332ef1f0ffSBarry Smith 
9342ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `InsertMode`, `MatGetValue()`, `MatSetValues()`,
9352ef1f0ffSBarry Smith           `MatSetValueLocal()`, `MatSetValuesLocal()`
9361620fd73SBarry Smith M*/
93716a05f60SBarry Smith static inline PetscErrorCode MatSetValue(Mat m, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
938d71ae5a4SJacob Faibussowitsch {
93916a05f60SBarry Smith   return MatSetValues(m, 1, &i, 1, &j, &va, mode);
9409371c9d4SSatish Balay }
9411620fd73SBarry Smith 
942e5e5a7b5SPatrick Sanan /*@C
943e5e5a7b5SPatrick Sanan    MatGetValue - Gets a single value from a matrix
9441620fd73SBarry Smith 
945e5e5a7b5SPatrick Sanan    Not Collective; can only return a value owned by the given process
946e5e5a7b5SPatrick Sanan 
947e5e5a7b5SPatrick Sanan    Input Parameters:
948e5e5a7b5SPatrick Sanan +  mat - the matrix
949e5e5a7b5SPatrick Sanan .  row - the row location of the entry
950e5e5a7b5SPatrick Sanan -  col - the column location of the entry
951e5e5a7b5SPatrick Sanan 
952e5e5a7b5SPatrick Sanan    Output Parameter:
953e5e5a7b5SPatrick Sanan .  va - the value
954e5e5a7b5SPatrick Sanan 
9552ef1f0ffSBarry Smith    Level: advanced
9562ef1f0ffSBarry Smith 
957e5e5a7b5SPatrick Sanan    Notes:
9582ef1f0ffSBarry Smith    The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd` before this call
9592ef1f0ffSBarry Smith 
96087497f52SBarry Smith    For efficiency one should use `MatGetValues()` and get several values simultaneously.
961e5e5a7b5SPatrick Sanan 
96287497f52SBarry Smith    See notes for `MatGetValues()`.
963e5e5a7b5SPatrick Sanan 
9642ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()`
965e5e5a7b5SPatrick Sanan @*/
966d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va)
967d71ae5a4SJacob Faibussowitsch {
9689371c9d4SSatish Balay   return MatGetValues(mat, 1, &row, 1, &col, va);
9699371c9d4SSatish Balay }
970e5e5a7b5SPatrick Sanan 
971e5e5a7b5SPatrick Sanan /*MC
9722ef1f0ffSBarry Smith    MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes.
973e5e5a7b5SPatrick Sanan 
974e5e5a7b5SPatrick Sanan    Not Collective
975e5e5a7b5SPatrick Sanan 
976e5e5a7b5SPatrick Sanan    Input Parameters:
977e5e5a7b5SPatrick Sanan +  m - the matrix
97816a05f60SBarry Smith .  i - the row location of the entry
97916a05f60SBarry Smith .  j - the column location of the entry
98016a05f60SBarry Smith .  va - the value to insert
98187497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
982e5e5a7b5SPatrick Sanan 
9832ef1f0ffSBarry Smith    Level: intermediate
9842ef1f0ffSBarry Smith 
985e5e5a7b5SPatrick Sanan    Notes:
98687497f52SBarry Smith    For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously.
987e5e5a7b5SPatrick Sanan 
98887497f52SBarry Smith    See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used.
989e5e5a7b5SPatrick Sanan 
9902ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatSetValue()`, `MatSetValuesLocal()`
991e5e5a7b5SPatrick Sanan M*/
99216a05f60SBarry Smith static inline PetscErrorCode MatSetValueLocal(Mat m, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
993d71ae5a4SJacob Faibussowitsch {
99416a05f60SBarry Smith   return MatSetValuesLocal(m, 1, &i, 1, &j, &va, mode);
9959371c9d4SSatish Balay }
9961620fd73SBarry Smith 
9971620fd73SBarry Smith /*MC
998d0609cedSBarry Smith    MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per
999bd481603SBarry Smith        row in a matrix providing the data that one can use to correctly preallocate the matrix.
1000bd481603SBarry Smith 
1001bd481603SBarry Smith    Synopsis:
1002aaa7dc30SBarry Smith    #include <petscmat.h>
1003d0609cedSBarry Smith    PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz)
1004bd481603SBarry Smith 
1005d083f849SBarry Smith    Collective
1006bd481603SBarry Smith 
1007bd481603SBarry Smith    Input Parameters:
1008bd481603SBarry Smith +  comm - the communicator that will share the eventually allocated matrix
1009859fcb39SBarry Smith .  nrows - the number of LOCAL rows in the matrix
1010859fcb39SBarry Smith -  ncols - the number of LOCAL columns in the matrix
1011bd481603SBarry Smith 
1012bd481603SBarry Smith    Output Parameters:
1013bd481603SBarry Smith +  dnz - the array that will be passed to the matrix preallocation routines
1014a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1015bd481603SBarry Smith 
10162ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1017bd481603SBarry Smith 
1018bd481603SBarry Smith    Notes:
10192ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
10202ef1f0ffSBarry Smith    the use of this routine
10212ef1f0ffSBarry Smith 
1022d0609cedSBarry Smith    This is a macro that handles its own error checking, it does not return an error code.
1023d0609cedSBarry Smith 
10242ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1025bd481603SBarry Smith 
10262ef1f0ffSBarry Smith    Developer Note:
10272ef1f0ffSBarry Smith     This is a MACRO not a function because it has a leading { that is closed by `PetscPreallocateFinalize()`.
1028bd481603SBarry Smith 
10292ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1030db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1031bd481603SBarry Smith M*/
10329371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \
10339371c9d4SSatish Balay   do { \
10343ba16761SJacob Faibussowitsch     PetscInt              __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \
10353ba16761SJacob Faibussowitsch     PetscInt PETSC_UNUSED __start; \
10369566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \
10379566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \
10389371c9d4SSatish Balay     __start = __end - __ncols; \
10399371c9d4SSatish Balay     (void)__start; \
10409566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \
10415f80ce2aSJacob Faibussowitsch   __rstart -= __nrows
10427c922b88SBarry Smith 
1043d0609cedSBarry Smith #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO("GCC warning \"Use MatPreallocateBegin() (since version 3.18)\"") MatPreallocateBegin(__VA_ARGS__)
1044d0609cedSBarry Smith 
1045bd481603SBarry Smith /*MC
1046bd481603SBarry Smith    MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1047bd481603SBarry Smith        inserted using a local number of the rows and columns
1048bd481603SBarry Smith 
1049bd481603SBarry Smith    Synopsis:
1050aaa7dc30SBarry Smith    #include <petscmat.h>
1051c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1052bd481603SBarry Smith 
1053bd481603SBarry Smith    Not Collective
1054bd481603SBarry Smith 
1055bd481603SBarry Smith    Input Parameters:
1056784ac674SJed Brown +  map - the row mapping from local numbering to global numbering
1057bd481603SBarry Smith .  nrows - the number of rows indicated
10581d73ed98SBarry Smith .  rows - the indices of the rows
1059784ac674SJed Brown .  cmap - the column mapping from local to global numbering
1060bd481603SBarry Smith .  ncols - the number of columns in the matrix
1061bd481603SBarry Smith .  cols - the columns indicated
1062bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1063a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1064bd481603SBarry Smith 
10652ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1066bd481603SBarry Smith 
1067bd481603SBarry Smith    Notes:
10682ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
10692ef1f0ffSBarry Smith    the use of this routine
1070bd481603SBarry Smith 
10712ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1072bd481603SBarry Smith 
10732ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1074db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()`
1075bd481603SBarry Smith M*/
107694bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
10779371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1078c4f061fbSSatish Balay 
1079bd481603SBarry Smith /*MC
1080c1154cd5SBarry Smith    MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1081c1154cd5SBarry Smith        inserted using a local number of the rows and columns. This version removes any duplicate columns in cols
1082c1154cd5SBarry Smith 
1083c1154cd5SBarry Smith    Synopsis:
1084c1154cd5SBarry Smith    #include <petscmat.h>
1085c1154cd5SBarry Smith    PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1086c1154cd5SBarry Smith 
1087c1154cd5SBarry Smith    Not Collective
1088c1154cd5SBarry Smith 
1089c1154cd5SBarry Smith    Input Parameters:
1090c1154cd5SBarry Smith +  map - the row mapping from local numbering to global numbering
1091c1154cd5SBarry Smith .  nrows - the number of rows indicated
1092c1154cd5SBarry Smith .  rows - the indices of the rows (these values are mapped to the global values)
1093c1154cd5SBarry Smith .  cmap - the column mapping from local to global numbering
1094c1154cd5SBarry Smith .  ncols - the number of columns in the matrix   (this value will be changed if duplicate columns are found)
1095c1154cd5SBarry Smith .  cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed)
1096c1154cd5SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1097a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1098c1154cd5SBarry Smith 
10992ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1100c1154cd5SBarry Smith 
1101c1154cd5SBarry Smith    Notes:
11022ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11032ef1f0ffSBarry Smith    the use of this routine
1104c1154cd5SBarry Smith 
11052ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1106c1154cd5SBarry Smith 
11072ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1108db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1109c1154cd5SBarry Smith M*/
111094bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11119371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1112c1154cd5SBarry Smith 
1113c1154cd5SBarry Smith /*MC
1114d6e23781SBarry Smith    MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1115bd481603SBarry Smith        inserted using a local number of the rows and columns
1116bd481603SBarry Smith 
1117bd481603SBarry Smith    Synopsis:
1118aaa7dc30SBarry Smith    #include <petscmat.h>
1119d6e23781SBarry Smith    PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1120d6e23781SBarry Smith 
1121d6e23781SBarry Smith    Not Collective
1122d6e23781SBarry Smith 
1123d6e23781SBarry Smith    Input Parameters:
1124d6e23781SBarry Smith +  map - the row mapping from local numbering to global numbering
1125d6e23781SBarry Smith .  nrows - the number of rows indicated
1126d6e23781SBarry Smith .  rows - the indices of the rows
1127d6e23781SBarry Smith .  cmap - the column mapping from local to global numbering
1128d6e23781SBarry Smith .  ncols - the number of columns in the matrix
1129d6e23781SBarry Smith .  cols - the columns indicated
1130d6e23781SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1131a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1132d6e23781SBarry Smith 
11332ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1134d6e23781SBarry Smith 
1135d6e23781SBarry Smith    Notes:
11362ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11372ef1f0ffSBarry Smith    the use of this routine
1138d6e23781SBarry Smith 
11392ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1140d6e23781SBarry Smith 
11412ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1142db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`
1143d6e23781SBarry Smith M*/
114494bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11459371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1146d6e23781SBarry Smith 
1147d6e23781SBarry Smith /*MC
1148d6e23781SBarry Smith    MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1149d6e23781SBarry Smith        inserted using a local number of the rows and columns
1150d6e23781SBarry Smith 
1151d6e23781SBarry Smith    Synopsis:
1152d6e23781SBarry Smith    #include <petscmat.h>
1153d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1154bd481603SBarry Smith 
1155bd481603SBarry Smith    Not Collective
1156bd481603SBarry Smith 
1157bd481603SBarry Smith    Input Parameters:
1158bd481603SBarry Smith +  map - the mapping between local numbering and global numbering
1159bd481603SBarry Smith .  nrows - the number of rows indicated
11601d73ed98SBarry Smith .  rows - the indices of the rows
1161bd481603SBarry Smith .  ncols - the number of columns in the matrix
1162bd481603SBarry Smith .  cols - the columns indicated
1163bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1164a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1165bd481603SBarry Smith 
11662ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1167bd481603SBarry Smith 
1168bd481603SBarry Smith    Notes:
11692ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11702ef1f0ffSBarry Smith    the use of this routine
1171bd481603SBarry Smith 
11722ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1173bd481603SBarry Smith 
11742ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`
1175db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1176bd481603SBarry Smith M*/
117794bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \
11789371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));)
1179e83a5d19SLisandro Dalcin 
1180bd481603SBarry Smith /*MC
1181bd481603SBarry Smith    MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1182bd481603SBarry Smith        inserted using a local number of the rows and columns
1183bd481603SBarry Smith 
1184bd481603SBarry Smith    Synopsis:
1185aaa7dc30SBarry Smith    #include <petscmat.h>
1186c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1187bd481603SBarry Smith 
1188bd481603SBarry Smith    Not Collective
1189bd481603SBarry Smith 
1190bd481603SBarry Smith    Input Parameters:
119164075487SBarry Smith +  row - the row
1192bd481603SBarry Smith .  ncols - the number of columns in the matrix
1193a50f8bf6SHong Zhang -  cols - the columns indicated
1194a50f8bf6SHong Zhang 
1195a50f8bf6SHong Zhang    Output Parameters:
1196a50f8bf6SHong Zhang +  dnz - the array that will be passed to the matrix preallocation routines
1197a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1198bd481603SBarry Smith 
11992ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1200bd481603SBarry Smith 
1201bd481603SBarry Smith    Notes:
12022ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12032ef1f0ffSBarry Smith    the use of this routine
1204bd481603SBarry Smith 
12052ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1206bd481603SBarry Smith 
1207d0609cedSBarry Smith    This is a MACRO not a function because it uses variables declared in MatPreallocateBegin().
12081620fd73SBarry Smith 
12092ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1210db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1211bd481603SBarry Smith M*/
12129371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \
12139371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \
121464075487SBarry Smith     if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \
1215a6042fd4SStefano Zampini     else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12169371c9d4SSatish Balay   })
12177c922b88SBarry Smith 
1218bd481603SBarry Smith /*MC
1219d6e23781SBarry Smith    MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1220bd481603SBarry Smith        inserted using a local number of the rows and columns
1221bd481603SBarry Smith 
1222bd481603SBarry Smith    Synopsis:
1223aaa7dc30SBarry Smith    #include <petscmat.h>
1224d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1225bd481603SBarry Smith 
1226bd481603SBarry Smith    Not Collective
1227bd481603SBarry Smith 
1228bd481603SBarry Smith    Input Parameters:
1229bd481603SBarry Smith +  nrows - the number of rows indicated
12301d73ed98SBarry Smith .  rows - the indices of the rows
1231bd481603SBarry Smith .  ncols - the number of columns in the matrix
1232bd481603SBarry Smith .  cols - the columns indicated
1233bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1234a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1235bd481603SBarry Smith 
12362ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1237bd481603SBarry Smith 
1238bd481603SBarry Smith    Notes:
12392ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12402ef1f0ffSBarry Smith    the use of this routine
1241bd481603SBarry Smith 
12422ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1243bd481603SBarry Smith 
1244d0609cedSBarry Smith    This is a MACRO not a function because it uses variables declared in MatPreallocateBegin().
12451620fd73SBarry Smith 
12462ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`,
1247db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1248bd481603SBarry Smith M*/
124994bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \
12509371c9d4SSatish Balay   PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \
1251d3d32019SBarry Smith     if (cols[__i] >= __end) onz[row - __rstart]++; \
1252a6042fd4SStefano Zampini     else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12539371c9d4SSatish Balay   })
1254d3d32019SBarry Smith 
1255bd481603SBarry Smith /*MC
1256a6042fd4SStefano Zampini    MatPreallocateLocation -  An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists
125716371a99SBarry Smith 
125816371a99SBarry Smith    Synopsis:
1259aaa7dc30SBarry Smith    #include <petscmat.h>
126016371a99SBarry Smith    PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz)
126116371a99SBarry Smith 
126216371a99SBarry Smith    Not Collective
126316371a99SBarry Smith 
126416371a99SBarry Smith    Input Parameters:
1265a2b725a8SWilliam Gropp +  A - matrix
126616371a99SBarry Smith .  row - row where values exist (must be local to this process)
126716371a99SBarry Smith .  ncols - number of columns
126816371a99SBarry Smith .  cols - columns with nonzeros
126916371a99SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1270a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
127116371a99SBarry Smith 
12722ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
127316371a99SBarry Smith 
127416371a99SBarry Smith    Notes:
12752ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12762ef1f0ffSBarry Smith    the use of this routine
127716371a99SBarry Smith 
12782ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
127916371a99SBarry Smith 
128016371a99SBarry Smith    This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines.
128116371a99SBarry Smith 
12822ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1283db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
128416371a99SBarry Smith M*/
1285d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz))
128616371a99SBarry Smith 
128716371a99SBarry Smith /*MC
1288d0609cedSBarry Smith    MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per
1289bd481603SBarry Smith        row in a matrix providing the data that one can use to correctly preallocate the matrix.
1290bd481603SBarry Smith 
1291bd481603SBarry Smith    Synopsis:
1292aaa7dc30SBarry Smith    #include <petscmat.h>
1293d0609cedSBarry Smith    PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz)
1294bd481603SBarry Smith 
1295d083f849SBarry Smith    Collective
1296bd481603SBarry Smith 
1297bd481603SBarry Smith    Input Parameters:
129816371a99SBarry Smith +  dnz - the array that was be passed to the matrix preallocation routines
1299a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1300bd481603SBarry Smith 
13012ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1302bd481603SBarry Smith 
1303bd481603SBarry Smith    Notes:
13042ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
13052ef1f0ffSBarry Smith    the use of this routine
1306d0609cedSBarry Smith 
13072ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1308bd481603SBarry Smith 
13092ef1f0ffSBarry Smith    Developer Note:
1310d0609cedSBarry Smith     This is a MACRO not a function because it closes the { started in MatPreallocateBegin().
13111620fd73SBarry Smith 
13122ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1313db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1314bd481603SBarry Smith M*/
13159371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \
13169371c9d4SSatish Balay   PetscCall(PetscFree2(dnz, onz)); \
13179371c9d4SSatish Balay   } \
13189371c9d4SSatish Balay   while (0)
1319d0609cedSBarry Smith 
1320d0609cedSBarry Smith #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO("GCC warning \"Use MatPreallocateEnd() (since version 3.18)\"") MatPreallocateEnd(__VA_ARGS__)
13217c922b88SBarry Smith 
13227b80b807SBarry Smith /* Routines unique to particular data structures */
1323014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *);
1324698d4c6aSKris Buschelman 
1325014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *);
1326014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *);
1327698d4c6aSKris Buschelman 
1328014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]);
1329014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]);
1330014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1331014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1332014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1333014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool);
13347b80b807SBarry Smith 
1335a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4
1336a96a251dSBarry Smith 
1337014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1338014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1339014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]);
134019b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt);
1341273d9f13SBarry Smith 
1342014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1343014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1344014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1345014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1346014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1347014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1348014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1349014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]);
1350b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *);
1351252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *);
1352014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]);
1353014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]);
13549230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
13559230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
1356014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *);
1357273d9f13SBarry Smith 
135849a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *);
1359ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt);
1360d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatDenseSetLDA() (since version 3.14)") static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda)
1361d71ae5a4SJacob Faibussowitsch {
13629371c9d4SSatish Balay   return MatDenseSetLDA(A, lda);
13639371c9d4SSatish Balay }
1364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *);
13651b807ce4Svictorle 
1366621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1367621e819fSSatish Balay 
1368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat);
1369014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat);
13702e8a6d31SBarry Smith 
1371014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *);
13727cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *);
13737b80b807SBarry Smith /*
13747b80b807SBarry Smith   These routines are not usually accessed directly, rather solving is
137594b7f48cSBarry Smith   done through the KSP and PC interfaces.
13767b80b807SBarry Smith */
13777b80b807SBarry Smith 
137876bdecfbSBarry Smith /*J
13792ef1f0ffSBarry Smith     MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used
13802ef1f0ffSBarry Smith     to reduce fill in sparse factorizations.
1381d9274352SBarry Smith 
1382d9274352SBarry Smith    Level: beginner
1383d9274352SBarry Smith 
13842c7c0729SBarry Smith    Notes:
138516a05f60SBarry Smith    If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one
138616a05f60SBarry Smith    of its own.
13872c7c0729SBarry Smith 
13882ef1f0ffSBarry Smith    There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()`
13892ef1f0ffSBarry Smith 
13902ef1f0ffSBarry Smith    Developer Note:
13912ef1f0ffSBarry Smith    This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning`
13922ef1f0ffSBarry Smith 
13932ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`,
13942ef1f0ffSBarry Smith           `PCFactorSetOrderingType()`
139576bdecfbSBarry Smith J*/
139619fd82e9SBarry Smith typedef const char *MatOrderingType;
13972692d6eeSBarry Smith #define MATORDERINGNATURAL       "natural"
13982692d6eeSBarry Smith #define MATORDERINGND            "nd"
13992692d6eeSBarry Smith #define MATORDERING1WD           "1wd"
14002692d6eeSBarry Smith #define MATORDERINGRCM           "rcm"
14012692d6eeSBarry Smith #define MATORDERINGQMD           "qmd"
14022692d6eeSBarry Smith #define MATORDERINGROWLENGTH     "rowlength"
1403510184a7SJed Brown #define MATORDERINGWBM           "wbm"
1404fc1bef75SJed Brown #define MATORDERINGSPECTRAL      "spectral"
1405312e372aSBarry Smith #define MATORDERINGAMD           "amd"           /* only works if UMFPACK is installed with PETSc */
1406048412efSPablo Brubeck #define MATORDERINGMETISND       "metisnd"       /* only works if METIS is installed with PETSc */
14079bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */
14082c7c0729SBarry Smith #define MATORDERINGEXTERNAL      "external"      /* uses an ordering type internal to the factorization package */
1409b12f92e5SBarry Smith 
141019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrdering(Mat, MatOrderingType, IS *, IS *);
1411140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrderingList(PetscFunctionList *);
1412bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode    MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *));
1413140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList;
1414d4fbbf0eSBarry Smith 
1415013e2dc7SBarry Smith #include "petscmatcoarsen.h"
1416013e2dc7SBarry Smith 
1417014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS);
1418fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *);
1419a2ce50c7SBarry Smith 
14204ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *);
14214ac6704cSBarry Smith 
1422d91e6319SBarry Smith /*S
14232ef1f0ffSBarry Smith     MatFactorShiftType - Type of numeric shift used for factorizations
1424d90ac83dSHong Zhang 
14252ef1f0ffSBarry Smith    Values:
14262ef1f0ffSBarry Smith +  `MAT_SHIFT_NONE` - do not shift the matrix diagonal entries
14272ef1f0ffSBarry Smith .  `MAT_SHIFT_NONZERO` - shift the entries to be non-zero
14282ef1f0ffSBarry Smith .  `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite
14292ef1f0ffSBarry Smith -  `MAT_SHIFT_INBLOCKS` - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ`
1430d90ac83dSHong Zhang 
14312ef1f0ffSBarry Smith    Level: intermediate
14322ef1f0ffSBarry Smith 
14332ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()`
1434d90ac83dSHong Zhang S*/
14359371c9d4SSatish Balay typedef enum {
14369371c9d4SSatish Balay   MAT_SHIFT_NONE,
14379371c9d4SSatish Balay   MAT_SHIFT_NONZERO,
14389371c9d4SSatish Balay   MAT_SHIFT_POSITIVE_DEFINITE,
14399371c9d4SSatish Balay   MAT_SHIFT_INBLOCKS
14409371c9d4SSatish Balay } MatFactorShiftType;
14416a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[];
14425e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[];
1443d90ac83dSHong Zhang 
1444d90ac83dSHong Zhang /*S
1445ec5066bdSBarry Smith     MatFactorError - indicates what type of error was generated in a matrix factorization
14469aa7eafdSHong Zhang 
14472ef1f0ffSBarry Smith     Values:
14482ef1f0ffSBarry Smith +   `MAT_FACTOR_NOERROR` - there was no error during the factorization
14492ef1f0ffSBarry Smith .   `MAT_FACTOR_STRUCT_ZEROPIVOT` - there was a missing entry in a diagonal location of the matrix
14502ef1f0ffSBarry Smith .   `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization
14512ef1f0ffSBarry Smith .   `MAT_FACTOR_OUTMEMORY` - the factorization has run out of memory
14522ef1f0ffSBarry Smith -   `MAT_FACTOR_OTHER` - some other error has occurred.
14539aa7eafdSHong Zhang 
14542ef1f0ffSBarry Smith     Level: intermediate
145500e125f8SBarry Smith 
14562ef1f0ffSBarry Smith     Note:
14572ef1f0ffSBarry Smith     When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason`
14582ef1f0ffSBarry Smith 
14592ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`,
14602ef1f0ffSBarry Smith           `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason`
14619aa7eafdSHong Zhang S*/
14629371c9d4SSatish Balay typedef enum {
14639371c9d4SSatish Balay   MAT_FACTOR_NOERROR,
14649371c9d4SSatish Balay   MAT_FACTOR_STRUCT_ZEROPIVOT,
14659371c9d4SSatish Balay   MAT_FACTOR_NUMERIC_ZEROPIVOT,
14669371c9d4SSatish Balay   MAT_FACTOR_OUTMEMORY,
14679371c9d4SSatish Balay   MAT_FACTOR_OTHER
14689371c9d4SSatish Balay } MatFactorError;
14699aa7eafdSHong Zhang 
147000e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *);
1471b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat);
14727b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *);
147300e125f8SBarry Smith 
14749aa7eafdSHong Zhang /*S
1475422a814eSBarry Smith    MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization
1476b00f7748SHong Zhang 
1477b00f7748SHong Zhang    Level: developer
1478b00f7748SHong Zhang 
14792ef1f0ffSBarry Smith    Note:
14802ef1f0ffSBarry Smith    You can use `MatFactorInfoInitialize()` to set default values.
1481b00f7748SHong Zhang 
14822ef1f0ffSBarry Smith    Fortran Note:
14832ef1f0ffSBarry Smith    The data is available in a double precision arrays of size `MAT_FACTORINFO_SIZE`
14842ef1f0ffSBarry Smith 
14852ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`,
14862ef1f0ffSBarry Smith           `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()`
1487b00f7748SHong Zhang S*/
1488b00f7748SHong Zhang typedef struct {
148915e8a5b3SHong Zhang   PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */
149085317021SBarry Smith   PetscReal usedt;
149115e8a5b3SHong Zhang   PetscReal dt;            /* drop tolerance */
1492b00f7748SHong Zhang   PetscReal dtcol;         /* tolerance for pivoting */
149315e8a5b3SHong Zhang   PetscReal dtcount;       /* maximum nonzeros to be allowed per row */
149467e28bfeSBarry Smith   PetscReal fill;          /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */
1495348344bbSBarry Smith   PetscReal levels;        /* ICC/ILU(levels) */
1496bcd9e38bSBarry Smith   PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0
1497bcd9e38bSBarry Smith                                    factorization may be faster if do not pivot */
149815e8a5b3SHong Zhang   PetscReal zeropivot;     /* pivot is called zero if less than this */
1499f4db908eSBarry Smith   PetscReal shifttype;     /* type of shift added to matrix factor to prevent zero pivots */
1500f4db908eSBarry Smith   PetscReal shiftamount;   /* how large the shift is */
150115e8a5b3SHong Zhang } MatFactorInfo;
1502ffa6d0a5SLois Curfman McInnes 
1503014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *);
15049a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *);
15059a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15069a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *);
15079a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *);
15089a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *);
15099a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15109a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15119a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15129a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *);
15139a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *);
15143f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *);
15153f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15163f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *);
1517014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *);
1518014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec);
1519014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec);
1520014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec);
1521014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec);
1522014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec);
1523014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec);
1524014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs);
15257c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat);
15267c2f51b8SStefano Zampini 
15279371c9d4SSatish Balay typedef enum {
15289371c9d4SSatish Balay   MAT_FACTOR_SCHUR_UNFACTORED,
15299371c9d4SSatish Balay   MAT_FACTOR_SCHUR_FACTORED,
15309371c9d4SSatish Balay   MAT_FACTOR_SCHUR_INVERTED
15319371c9d4SSatish Balay } MatFactorSchurStatus;
15328e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS);
15337c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15347c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus);
15355a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat);
15367c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15375a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec);
15385a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec);
15396dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat);
1540bb5a7306SBarry Smith 
15418a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat);
1542d91e6319SBarry Smith /*E
1543d91e6319SBarry Smith     MatSORType - What type of (S)SOR to perform
1544bb1eb677SSatish Balay 
15452ef1f0ffSBarry Smith    Values:
15462ef1f0ffSBarry Smith +  `SOR_FORWARD_SWEEP` - do a sweep from the first row of the matrix to the last
15472ef1f0ffSBarry Smith .  `SOR_BACKWARD_SWEEP` -  do a sweep from the last row to the first
15482ef1f0ffSBarry Smith .  `SOR_SYMMETRIC_SWEEP` - do a sweep from the first row to the last and then back to the first
15492ef1f0ffSBarry Smith .  `SOR_LOCAL_FORWARD_SWEEP` - each MPI rank does its own forward sweep with no communication
15502ef1f0ffSBarry Smith .  `SOR_LOCAL_BACKWARD_SWEEP` - each MPI rank does its own backward sweep with no communication
15512ef1f0ffSBarry Smith .  `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI rank does its own symmetric sweep with no communication
15522ef1f0ffSBarry Smith .  `SOR_ZERO_INITIAL_GUESS` - indicates the initial solution is zero so the sweep can avoid unneeded computation
15532ef1f0ffSBarry Smith .  `SOR_EISENSTAT` - apply the Eisentat application of SOR, see `PCEISENSTAT`
15542ef1f0ffSBarry Smith .  `SOR_APPLY_UPPER` - multiply by the upper triangular portion of the matrix
15552ef1f0ffSBarry Smith -  `SOR_APPLY_LOWER` - multiply by the lower triangular portion of the matrix
15562ef1f0ffSBarry Smith 
1557d91e6319SBarry Smith     Level: beginner
1558d91e6319SBarry Smith 
15592ef1f0ffSBarry Smith    Note:
15602ef1f0ffSBarry Smith    These may be bitwise ORd together
1561d9274352SBarry Smith 
15622ef1f0ffSBarry Smith    Developer Note:
15632ef1f0ffSBarry Smith    Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below
1564d91e6319SBarry Smith 
15652ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatSOR()`
1566d91e6319SBarry Smith E*/
15679371c9d4SSatish Balay typedef enum {
15689371c9d4SSatish Balay   SOR_FORWARD_SWEEP         = 1,
15699371c9d4SSatish Balay   SOR_BACKWARD_SWEEP        = 2,
15709371c9d4SSatish Balay   SOR_SYMMETRIC_SWEEP       = 3,
15719371c9d4SSatish Balay   SOR_LOCAL_FORWARD_SWEEP   = 4,
15729371c9d4SSatish Balay   SOR_LOCAL_BACKWARD_SWEEP  = 8,
15739371c9d4SSatish Balay   SOR_LOCAL_SYMMETRIC_SWEEP = 12,
15749371c9d4SSatish Balay   SOR_ZERO_INITIAL_GUESS    = 16,
15759371c9d4SSatish Balay   SOR_EISENSTAT             = 32,
15769371c9d4SSatish Balay   SOR_APPLY_UPPER           = 64,
15779371c9d4SSatish Balay   SOR_APPLY_LOWER           = 128
15789371c9d4SSatish Balay } MatSORType;
1579014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
15808ed539a5SBarry Smith 
15817086a01eSPeter Brune /*S
15827086a01eSPeter Brune      MatColoring - Object for managing the coloring of matrices.
15837086a01eSPeter Brune 
15847086a01eSPeter Brune    Level: beginner
15857086a01eSPeter Brune 
1586ec5066bdSBarry Smith    Notes:
158787497f52SBarry Smith    Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
158887497f52SBarry Smith    matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors).
1589ec5066bdSBarry Smith 
159087497f52SBarry Smith    Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This
15912ef1f0ffSBarry Smith    same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices.
1592ec5066bdSBarry Smith 
15932ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`,
15942ef1f0ffSBarry Smith           `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`,
15952ef1f0ffSBarry Smith           `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen`
15967086a01eSPeter Brune S*/
1597d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring;
1598d4db15c4SBarry Smith 
1599d4db15c4SBarry Smith /*J
1600d4db15c4SBarry Smith     MatColoringType - String with the name of a PETSc matrix coloring
1601d9274352SBarry Smith 
1602d9274352SBarry Smith    Level: beginner
1603d9274352SBarry Smith 
16042ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring`
160576bdecfbSBarry Smith J*/
160619fd82e9SBarry Smith typedef const char *MatColoringType;
16075567d71aSPeter Brune #define MATCOLORINGJP      "jp"
1608b9acb617SPeter Brune #define MATCOLORINGPOWER   "power"
16092692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural"
16102692d6eeSBarry Smith #define MATCOLORINGSL      "sl"
16112692d6eeSBarry Smith #define MATCOLORINGLF      "lf"
16122692d6eeSBarry Smith #define MATCOLORINGID      "id"
16138121bdceSPeter Brune #define MATCOLORINGGREEDY  "greedy"
1614b12f92e5SBarry Smith 
16158ac6da0aSPeter Brune /*E
16162ef1f0ffSBarry Smith    MatColoringWeightType - Type of weight scheme used for the coloring algorithm
16178ac6da0aSPeter Brune 
16182ef1f0ffSBarry Smith     Values:
161987497f52SBarry Smith +   `MAT_COLORING_RANDOM`  - Random weights
162087497f52SBarry Smith .   `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering.
162187497f52SBarry Smith -   `MAT_COLORING_LF`      - Last-first weighting.
16228ac6da0aSPeter Brune 
16238ac6da0aSPeter Brune     Level: intermediate
16248ac6da0aSPeter Brune 
16252ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()`
16268ac6da0aSPeter Brune E*/
16279371c9d4SSatish Balay typedef enum {
16289371c9d4SSatish Balay   MAT_COLORING_WEIGHT_RANDOM,
16299371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LEXICAL,
16309371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LF,
16319371c9d4SSatish Balay   MAT_COLORING_WEIGHT_SL
16329371c9d4SSatish Balay } MatColoringWeightType;
16338ac6da0aSPeter Brune 
1634335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *);
1635d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *);
1636335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *);
1637335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer);
1638335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType);
1639335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring);
1640335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt);
1641335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *);
1642335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt);
1643335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *);
1644335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *);
1645335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring));
1646014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *);
16478ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType);
1648c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *);
16498ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm);
1650bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring);
1651d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatColoringTest() (since version 3.10)") static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring)
1652d71ae5a4SJacob Faibussowitsch {
16539371c9d4SSatish Balay   return MatColoringTest(matcoloring, iscoloring);
16549371c9d4SSatish Balay }
1655bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring);
1656639f9d9dSBarry Smith 
1657d9274352SBarry Smith /*S
165887497f52SBarry Smith      MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring
1659639f9d9dSBarry Smith 
1660d9274352SBarry Smith    Level: beginner
1661d9274352SBarry Smith 
1662ec5066bdSBarry Smith    Notes:
166387497f52SBarry Smith    This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()`
1664ec5066bdSBarry Smith 
16652ef1f0ffSBarry Smith    The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object
16662ef1f0ffSBarry Smith 
16672ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()`
1668d9274352SBarry Smith S*/
1669e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring;
1670639f9d9dSBarry Smith 
1671014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *);
1672014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *);
1673014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer);
1674014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *);
1675014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **);
1676014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal);
1677014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring);
1678d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *);
1679014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec);
1680edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]);
1681f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring);
1682f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt);
1683bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *);
1684b1683b59SHong Zhang 
1685b1683b59SHong Zhang /*S
1686b9af6bddSHong Zhang      MatTransposeColoring - Object for computing a sparse matrix product C=A*B^T via coloring
1687b1683b59SHong Zhang 
16882ef1f0ffSBarry Smith    Level: developer
1689b1683b59SHong Zhang 
16902ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()`
1691b1683b59SHong Zhang S*/
1692b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring;
1693b1683b59SHong Zhang 
1694014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *);
1695014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat);
1696014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat);
1697014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *);
1698b1683b59SHong Zhang 
1699d9274352SBarry Smith /*S
1700d9274352SBarry Smith      MatPartitioning - Object for managing the partitioning of a matrix or graph
1701d9274352SBarry Smith 
1702d9274352SBarry Smith    Level: beginner
1703d9274352SBarry Smith 
170487497f52SBarry Smith    Note:
170587497f52SBarry Smith      There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations
170687497f52SBarry Smith      via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`)
1707ec5066bdSBarry Smith 
1708ec5066bdSBarry Smith    Developers Note:
17092ef1f0ffSBarry Smith      It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed
1710ec5066bdSBarry Smith 
17112ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`,
17122ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
1713d9274352SBarry Smith S*/
171491e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning;
1715d9274352SBarry Smith 
171676bdecfbSBarry Smith /*J
17178f6c3df8SBarry Smith     MatPartitioningType - String with the name of a PETSc matrix partitioning
1718d9274352SBarry Smith 
1719d9274352SBarry Smith    Level: beginner
17200d04baf8SBarry Smith dm
17212ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`,
17222ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
172376bdecfbSBarry Smith J*/
172419fd82e9SBarry Smith typedef const char *MatPartitioningType;
17252692d6eeSBarry Smith #define MATPARTITIONINGCURRENT  "current"
1726aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE  "average"
17272692d6eeSBarry Smith #define MATPARTITIONINGSQUARE   "square"
17282692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis"
17292692d6eeSBarry Smith #define MATPARTITIONINGCHACO    "chaco"
17302692d6eeSBarry Smith #define MATPARTITIONINGPARTY    "party"
173150d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch"
173288d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch"
173371306c60Sjroman 
1734014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *);
173519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType);
1736014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt);
1737014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat);
1738252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt);
1739014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]);
1740014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]);
1741ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool);
1742ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *);
1743014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *);
1744fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *);
1745668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS);
1746f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *);
1747014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *);
1748bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning));
1749014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer);
1750fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]);
1751014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning);
175219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *);
1753ca161407SBarry Smith 
175427538973SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part);
1755014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning);
1756014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *);
17570752156aSBarry Smith 
17589371c9d4SSatish Balay typedef enum {
17599371c9d4SSatish Balay   MP_CHACO_MULTILEVEL = 1,
17609371c9d4SSatish Balay   MP_CHACO_SPECTRAL   = 2,
17619371c9d4SSatish Balay   MP_CHACO_LINEAR     = 4,
17629371c9d4SSatish Balay   MP_CHACO_RANDOM     = 5,
17639371c9d4SSatish Balay   MP_CHACO_SCATTERED  = 6
17649371c9d4SSatish Balay } MPChacoGlobalType;
17656a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[];
17669371c9d4SSatish Balay typedef enum {
17679371c9d4SSatish Balay   MP_CHACO_KERNIGHAN = 1,
17689371c9d4SSatish Balay   MP_CHACO_NONE      = 2
17699371c9d4SSatish Balay } MPChacoLocalType;
17706a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[];
17719371c9d4SSatish Balay typedef enum {
17729371c9d4SSatish Balay   MP_CHACO_LANCZOS = 0,
17739371c9d4SSatish Balay   MP_CHACO_RQI     = 1
17749371c9d4SSatish Balay } MPChacoEigenType;
17756a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[];
1776b6956c12SJose Roman 
1777014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType);
1778014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *);
1779014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType);
1780014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *);
1781014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal);
1782014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType);
1783014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *);
1784014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal);
1785014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *);
1786014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt);
1787014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *);
178871306c60Sjroman 
178971306c60Sjroman #define MP_PARTY_OPT "opt"
179071306c60Sjroman #define MP_PARTY_LIN "lin"
179171306c60Sjroman #define MP_PARTY_SCA "sca"
179271306c60Sjroman #define MP_PARTY_RAN "ran"
179371306c60Sjroman #define MP_PARTY_GBF "gbf"
179471306c60Sjroman #define MP_PARTY_GCF "gcf"
179571306c60Sjroman #define MP_PARTY_BUB "bub"
179671306c60Sjroman #define MP_PARTY_DEF "def"
1797014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *);
179871306c60Sjroman #define MP_PARTY_HELPFUL_SETS  "hs"
179971306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl"
180071306c60Sjroman #define MP_PARTY_NONE          "no"
1801014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *);
1802014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal);
1803014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool);
1804014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool);
180571306c60Sjroman 
18069371c9d4SSatish Balay typedef enum {
18079371c9d4SSatish Balay   MP_PTSCOTCH_DEFAULT,
18089371c9d4SSatish Balay   MP_PTSCOTCH_QUALITY,
18099371c9d4SSatish Balay   MP_PTSCOTCH_SPEED,
18109371c9d4SSatish Balay   MP_PTSCOTCH_BALANCE,
18119371c9d4SSatish Balay   MP_PTSCOTCH_SAFETY,
18129371c9d4SSatish Balay   MP_PTSCOTCH_SCALABILITY
18139371c9d4SSatish Balay } MPPTScotchStrategyType;
18146a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[];
1815e0f1cffaSJose Roman 
1816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal);
1817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *);
1818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType);
1819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *);
182071306c60Sjroman 
1821b43b03e9SMark F. Adams /*
18226294fa2bSFande Kong  * hierarchical partitioning
18236294fa2bSFande Kong  */
18244e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *);
18254e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *);
18264e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt);
18274e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt);
18286294fa2bSFande Kong 
1829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *);
1830591294e4SBarry Smith 
18310752156aSBarry Smith /*
1832c786d857SStefano Zampini     If you add entries here you must also add them to src/mat/f90-mod/petscmat.h
1833c786d857SStefano Zampini     If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx
1834d4fbbf0eSBarry Smith */
18359371c9d4SSatish Balay typedef enum {
18369371c9d4SSatish Balay   MATOP_SET_VALUES               = 0,
18371c1c02c0SLois Curfman McInnes   MATOP_GET_ROW                  = 1,
18381c1c02c0SLois Curfman McInnes   MATOP_RESTORE_ROW              = 2,
18391c1c02c0SLois Curfman McInnes   MATOP_MULT                     = 3,
18401c1c02c0SLois Curfman McInnes   MATOP_MULT_ADD                 = 4,
18417c922b88SBarry Smith   MATOP_MULT_TRANSPOSE           = 5,
18427c922b88SBarry Smith   MATOP_MULT_TRANSPOSE_ADD       = 6,
18431c1c02c0SLois Curfman McInnes   MATOP_SOLVE                    = 7,
18441c1c02c0SLois Curfman McInnes   MATOP_SOLVE_ADD                = 8,
18457c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE          = 9,
18467c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE_ADD      = 10,
18471c1c02c0SLois Curfman McInnes   MATOP_LUFACTOR                 = 11,
18481c1c02c0SLois Curfman McInnes   MATOP_CHOLESKYFACTOR           = 12,
1849a714c06dSBarry Smith   MATOP_SOR                      = 13,
18501c1c02c0SLois Curfman McInnes   MATOP_TRANSPOSE                = 14,
18511c1c02c0SLois Curfman McInnes   MATOP_GETINFO                  = 15,
18521c1c02c0SLois Curfman McInnes   MATOP_EQUAL                    = 16,
18531c1c02c0SLois Curfman McInnes   MATOP_GET_DIAGONAL             = 17,
18541c1c02c0SLois Curfman McInnes   MATOP_DIAGONAL_SCALE           = 18,
18551c1c02c0SLois Curfman McInnes   MATOP_NORM                     = 19,
18561c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_BEGIN           = 20,
18571c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_END             = 21,
1858d519adbfSMatthew Knepley   MATOP_SET_OPTION               = 22,
1859d519adbfSMatthew Knepley   MATOP_ZERO_ENTRIES             = 23,
1860d519adbfSMatthew Knepley   MATOP_ZERO_ROWS                = 24,
1861d519adbfSMatthew Knepley   MATOP_LUFACTOR_SYMBOLIC        = 25,
1862d519adbfSMatthew Knepley   MATOP_LUFACTOR_NUMERIC         = 26,
1863d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27,
1864d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_NUMERIC  = 28,
1865e5f2d425SStefano Zampini   MATOP_SETUP                    = 29,
1866d519adbfSMatthew Knepley   MATOP_ILUFACTOR_SYMBOLIC       = 30,
1867d519adbfSMatthew Knepley   MATOP_ICCFACTOR_SYMBOLIC       = 31,
1868a5b7ff6bSBarry Smith   MATOP_GET_DIAGONAL_BLOCK       = 32,
1869e5f2d425SStefano Zampini   MATOP_SET_INF                  = 33,
1870d519adbfSMatthew Knepley   MATOP_DUPLICATE                = 34,
1871d519adbfSMatthew Knepley   MATOP_FORWARD_SOLVE            = 35,
1872d519adbfSMatthew Knepley   MATOP_BACKWARD_SOLVE           = 36,
1873d519adbfSMatthew Knepley   MATOP_ILUFACTOR                = 37,
1874d519adbfSMatthew Knepley   MATOP_ICCFACTOR                = 38,
1875d519adbfSMatthew Knepley   MATOP_AXPY                     = 39,
18767dae84e0SHong Zhang   MATOP_CREATE_SUBMATRICES       = 40,
1877d519adbfSMatthew Knepley   MATOP_INCREASE_OVERLAP         = 41,
1878d519adbfSMatthew Knepley   MATOP_GET_VALUES               = 42,
1879d519adbfSMatthew Knepley   MATOP_COPY                     = 43,
1880d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX              = 44,
1881d519adbfSMatthew Knepley   MATOP_SCALE                    = 45,
1882d519adbfSMatthew Knepley   MATOP_SHIFT                    = 46,
188335153367SBarry Smith   MATOP_DIAGONAL_SET             = 47,
18849d39f69dSJed Brown   MATOP_ZERO_ROWS_COLUMNS        = 48,
18859d39f69dSJed Brown   MATOP_SET_RANDOM               = 49,
1886d519adbfSMatthew Knepley   MATOP_GET_ROW_IJ               = 50,
1887d519adbfSMatthew Knepley   MATOP_RESTORE_ROW_IJ           = 51,
1888d519adbfSMatthew Knepley   MATOP_GET_COLUMN_IJ            = 52,
1889d519adbfSMatthew Knepley   MATOP_RESTORE_COLUMN_IJ        = 53,
1890d519adbfSMatthew Knepley   MATOP_FDCOLORING_CREATE        = 54,
1891d519adbfSMatthew Knepley   MATOP_COLORING_PATCH           = 55,
1892d519adbfSMatthew Knepley   MATOP_SET_UNFACTORED           = 56,
1893d519adbfSMatthew Knepley   MATOP_PERMUTE                  = 57,
1894d519adbfSMatthew Knepley   MATOP_SET_VALUES_BLOCKED       = 58,
18957dae84e0SHong Zhang   MATOP_CREATE_SUBMATRIX         = 59,
1896d519adbfSMatthew Knepley   MATOP_DESTROY                  = 60,
1897d519adbfSMatthew Knepley   MATOP_VIEW                     = 61,
1898d519adbfSMatthew Knepley   MATOP_CONVERT_FROM             = 62,
1899e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_63=63 */
19007bab7c10SHong Zhang   MATOP_MATMAT_MULT_SYMBOLIC    = 64,
19017bab7c10SHong Zhang   MATOP_MATMAT_MULT_NUMERIC     = 65,
1902d519adbfSMatthew Knepley   MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66,
1903d519adbfSMatthew Knepley   MATOP_SET_VALUES_LOCAL        = 67,
1904d519adbfSMatthew Knepley   MATOP_ZERO_ROWS_LOCAL         = 68,
1905d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX_ABS         = 69,
1906d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN_ABS         = 70,
1907d519adbfSMatthew Knepley   MATOP_CONVERT                 = 71,
1908e5f2d425SStefano Zampini   MATOP_HAS_OPERATION           = 72,
19099d39f69dSJed Brown   /* MATOP_PLACEHOLDER_73=73, */
1910d519adbfSMatthew Knepley   MATOP_SET_VALUES_ADIFOR = 74,
1911d519adbfSMatthew Knepley   MATOP_FD_COLORING_APPLY = 75,
1912d519adbfSMatthew Knepley   MATOP_SET_FROM_OPTIONS  = 76,
1913e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_77=77, */
1914e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_78=78, */
19159d39f69dSJed Brown   MATOP_FIND_ZERO_DIAGONALS       = 79,
1916d519adbfSMatthew Knepley   MATOP_MULT_MULTIPLE             = 80,
1917d519adbfSMatthew Knepley   MATOP_SOLVE_MULTIPLE            = 81,
1918d519adbfSMatthew Knepley   MATOP_GET_INERTIA               = 82,
1919d519adbfSMatthew Knepley   MATOP_LOAD                      = 83,
1920d519adbfSMatthew Knepley   MATOP_IS_SYMMETRIC              = 84,
1921d519adbfSMatthew Knepley   MATOP_IS_HERMITIAN              = 85,
1922d519adbfSMatthew Knepley   MATOP_IS_STRUCTURALLY_SYMMETRIC = 86,
1923820469bcSHong Zhang   MATOP_SET_VALUES_BLOCKEDLOCAL   = 87,
1924b41ce5d5SBarry Smith   MATOP_CREATE_VECS               = 88,
1925e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_89=89, */
1926d519adbfSMatthew Knepley   MATOP_MAT_MULT_SYMBOLIC = 90,
1927d519adbfSMatthew Knepley   MATOP_MAT_MULT_NUMERIC  = 91,
1928e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_92=92, */
1929d519adbfSMatthew Knepley   MATOP_PTAP_SYMBOLIC = 93,
1930d519adbfSMatthew Knepley   MATOP_PTAP_NUMERIC  = 94,
1931e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_95=95, */
1932bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96,
1933bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_NUMER = 97,
1934e5f2d425SStefano Zampini   MATOP_BIND_TO_CPU              = 98,
19357a3c3d58SStefano Zampini   MATOP_PRODUCTSETFROMOPTIONS    = 99,
19367a3c3d58SStefano Zampini   MATOP_PRODUCTSYMBOLIC          = 100,
19377a3c3d58SStefano Zampini   MATOP_PRODUCTNUMERIC           = 101,
1938d519adbfSMatthew Knepley   MATOP_CONJUGATE                = 102,
1939e5f2d425SStefano Zampini   MATOP_VIEW_NATIVE              = 103,
1940d519adbfSMatthew Knepley   MATOP_SET_VALUES_ROW           = 104,
1941d519adbfSMatthew Knepley   MATOP_REAL_PART                = 105,
1942bda6c4cbSBarry Smith   MATOP_IMAGINARY_PART           = 106,
1943bda6c4cbSBarry Smith   MATOP_GET_ROW_UPPER_TRIANGULAR = 107,
1944bda6c4cbSBarry Smith   MATOP_RESTORE_ROW_UPPER_TRIANG = 108,
1945bda6c4cbSBarry Smith   MATOP_MAT_SOLVE                = 109,
194629eadf9eSStefano Zampini   MATOP_MAT_SOLVE_TRANSPOSE      = 110,
1947d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN              = 111,
19480e8d04f7SBarry Smith   MATOP_GET_COLUMN_VECTOR        = 112,
1949d519adbfSMatthew Knepley   MATOP_MISSING_DIAGONAL         = 113,
19500e8d04f7SBarry Smith   MATOP_GET_SEQ_NONZERO_STRUCTUR = 114,
195189c6957cSBarry Smith   MATOP_CREATE                   = 115,
195289c6957cSBarry Smith   MATOP_GET_GHOSTS               = 116,
19530e8d04f7SBarry Smith   MATOP_GET_LOCAL_SUB_MATRIX     = 117,
19540e8d04f7SBarry Smith   MATOP_RESTORE_LOCALSUB_MATRIX  = 118,
1955eeffb40dSHong Zhang   MATOP_MULT_DIAGONAL_BLOCK      = 119,
19560e8d04f7SBarry Smith   MATOP_HERMITIAN_TRANSPOSE      = 120,
19570e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANSPOSE = 121,
19580e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANS_ADD = 122,
19590e8d04f7SBarry Smith   MATOP_GET_MULTI_PROC_BLOCK     = 123,
19609d39f69dSJed Brown   MATOP_FIND_NONZERO_ROWS        = 124,
19610e8d04f7SBarry Smith   MATOP_GET_COLUMN_NORMS         = 125,
19629d39f69dSJed Brown   MATOP_INVERT_BLOCK_DIAGONAL    = 126,
1963e5f2d425SStefano Zampini   MATOP_INVERT_VBLOCK_DIAGONAL   = 127,
1964b41ce5d5SBarry Smith   MATOP_CREATE_SUB_MATRICES_MPI  = 128,
19652b8ad9a3SHong Zhang   MATOP_SET_VALUES_BATCH         = 129,
1966e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_130=130, */
19670e8d04f7SBarry Smith   MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131,
1968e9b602ebSSatish Balay   MATOP_TRANSPOSE_MAT_MULT_NUMER = 132,
19690e8d04f7SBarry Smith   MATOP_TRANSPOSE_COLORING_CREAT = 133,
19700e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_SPT = 134,
19710e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_DEN = 135,
1972e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_136=136, */
19730e8d04f7SBarry Smith   MATOP_RART_SYMBOLIC         = 137,
19740e8d04f7SBarry Smith   MATOP_RART_NUMERIC          = 138,
1975e09a3074SHong Zhang   MATOP_SET_BLOCK_SIZES       = 139,
1976f9426fe0SMark Adams   MATOP_AYPX                  = 140,
19771919a2e2SJed Brown   MATOP_RESIDUAL              = 141,
19789c8f2541SHong Zhang   MATOP_FDCOLORING_SETUP      = 142,
1979e5f2d425SStefano Zampini   MATOP_FIND_OFFBLOCK_ENTRIES = 143,
19802d033e1fSHong Zhang   MATOP_MPICONCATENATESEQ     = 144,
1981bb01b7b0SPatrick Sanan   MATOP_DESTROYSUBMATRICES    = 145,
1982e265f6d6SPatrick Sanan   MATOP_TRANSPOSE_SOLVE       = 146,
1983e265f6d6SPatrick Sanan   MATOP_GET_VALUES_LOCAL      = 147
1984fae171e0SBarry Smith } MatOperation;
19850c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void));
1986976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void));
1987976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *);
198894342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *);
1989d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatProductClear() (since version 3.14)") static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A)
1990d71ae5a4SJacob Faibussowitsch {
19919371c9d4SSatish Balay   return MatProductClear(A);
19929371c9d4SSatish Balay }
1993014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void));
1994014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void));
1995014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *);
1996800f99ffSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *));
1997db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType);
1998f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
1999f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
20000c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat);
2001b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType);
2002b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *);
2003112a2221SBarry Smith 
200490ace30eSBarry Smith /*
200590ace30eSBarry Smith    Codes for matrices stored on disk. By default they are
200690ace30eSBarry Smith    stored in a universal format. By changing the format with
20076a9046bcSBarry Smith    PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will
200890ace30eSBarry Smith    be stored in a way natural for the matrix, for example dense matrices
200990ace30eSBarry Smith    would be stored as dense. Matrices stored this way may only be
2010f4403165SShri Abhyankar    read into matrices of the same type.
201190ace30eSBarry Smith */
201290ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1
201390ace30eSBarry Smith 
2014014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal);
201575d48cdbSStefano Zampini 
20168546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType);
201775d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
201875d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool);
2019f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool);
2020014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *);
20213b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *);
2022014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat);
2023e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
202425ef9dfeSBarry Smith PETSC_EXTERN                PETSC_DEPRECATED_FUNCTION("Use the MatConvert() interface (since version 3.10)") PetscErrorCode MatISGetMPIXAIJ(Mat, MatReuse, Mat *);
20251f4e1ec7SBarry Smith 
2026d9274352SBarry Smith /*S
2027d9274352SBarry Smith      MatNullSpace - Object that removes a null space from a vector, i.e.
2028cb6b9846SMatthew Knepley          orthogonalizes the vector to a subspace
2029d9274352SBarry Smith 
2030f7a9e4ceSBarry Smith    Level: advanced
2031d9274352SBarry Smith 
20322ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()`
2033d9274352SBarry Smith S*/
203474637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace;
2035d9274352SBarry Smith 
2036014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *);
2037014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *);
2038014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *);
2039d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec);
2040014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *);
20415fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *);
20425fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace);
2043014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace);
2044014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace);
2045014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *);
2046014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *);
2047014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer);
2048014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **);
2049014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *);
205074637425SBarry Smith 
2051014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS);
2052014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal);
2053014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *);
20543f1d51d7SBarry Smith 
2055014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *);
2056014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *);
2057014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *);
2058c4f061fbSSatish Balay 
20590bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *);
20600bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *);
20610bacdadaSStefano Zampini 
2062d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatComputeOperator() (since version 3.12)") static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B)
2063d71ae5a4SJacob Faibussowitsch {
2064f22e26b7SPierre Jolivet   return MatComputeOperator(A, PETSC_NULLPTR, B);
20659371c9d4SSatish Balay }
2066d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatComputeOperatorTranspose() (since version 3.12)") static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B)
2067d71ae5a4SJacob Faibussowitsch {
2068f22e26b7SPierre Jolivet   return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B);
20699371c9d4SSatish Balay }
2070b0a32e0cSBarry Smith 
207149bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *);
207249bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *);
2073a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **);
2074a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2075a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **);
2076a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **);
2077a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **);
2078a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2079a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **);
2080a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **);
2081dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat);
2082dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]);
2083dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]);
2084910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *);
208549bd79ccSDebojyoti Ghosh 
2086014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec);
208704f1ad80SBarry Smith 
2088014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2089014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec);
2090014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *);
2091014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *));
2092014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec));
2093014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt);
2094014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat);
2095014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal);
2096014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt);
2097014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *);
2098014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]);
2099014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *);
2100014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *);
2101e884886fSBarry Smith 
21026370053bSBarry Smith /*S
21036370053bSBarry Smith     MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free
21046370053bSBarry Smith               Jacobian vector products
2105e884886fSBarry Smith 
21062ef1f0ffSBarry Smith     Level: developer
21072ef1f0ffSBarry Smith 
210895452b02SPatrick Sanan     Notes:
210987497f52SBarry Smith     `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure
21106370053bSBarry Smith 
21112ef1f0ffSBarry Smith      MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure
21126370053bSBarry Smith 
21132ef1f0ffSBarry Smith     This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator`
21146370053bSBarry Smith 
21152ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`,
21162ef1f0ffSBarry Smith           `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator`
21176370053bSBarry Smith S*/
2118e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD;
2119e884886fSBarry Smith 
212076bdecfbSBarry Smith /*J
21212ef1f0ffSBarry Smith     MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function
2122e884886fSBarry Smith 
212316a05f60SBarry Smith    Values:
212416a05f60SBarry Smith +   `MATMFFD_DS` - an algorithm described by Dennis and Schnabel
212516a05f60SBarry Smith -   `MATMFFD_WP` - the Walker-Pernice strategy.
212616a05f60SBarry Smith 
2127e884886fSBarry Smith    Level: beginner
2128e884886fSBarry Smith 
21292ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()`
213076bdecfbSBarry Smith J*/
213119fd82e9SBarry Smith typedef const char *MatMFFDType;
2132e884886fSBarry Smith #define MATMFFD_DS "ds"
2133e884886fSBarry Smith #define MATMFFD_WP "wp"
2134e884886fSBarry Smith 
213519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType);
2136bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD));
2137e884886fSBarry Smith 
2138014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal);
2139014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool);
2140e884886fSBarry Smith 
214161ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType);
214261ab5df0SBarry Smith 
2143014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *);
2144014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *);
21457dbadf16SMatthew Knepley 
214653022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS
214753022affSStefano Zampini PETSC_EXTERN_TYPEDEF typedef PetscScalar (*MatH2OpusKernel)(PetscInt, PetscReal[], PetscReal[], void *);
214853022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernel, void *, PetscReal, PetscInt, PetscInt, Mat *);
214953022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *);
215053022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal);
215153022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat);
215253022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal);
215353022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool);
215453022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *);
215553022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *);
215653022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *);
2157300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar);
2158a0d2e7d8SStefano Zampini #endif
2159a0d2e7d8SStefano Zampini 
2160c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL
216198e73e17SPierre Jolivet PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatHtoolKernel)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *);
2162c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernel, void *, Mat *);
2163c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernel, void *);
216498e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *);
216598e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *);
216698e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool);
21672ef1f0ffSBarry Smith 
2168c7a4214aSPierre Jolivet /*E
216987497f52SBarry Smith      MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL`
2170c7a4214aSPierre Jolivet 
2171c7a4214aSPierre Jolivet     Values:
217287497f52SBarry Smith +   `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation
217387497f52SBarry Smith .   `MAT_HTOOL_COMPRESSOR_FULL_ACA` - full adaptive cross approximation
217487497f52SBarry Smith -   `MAT_HTOOL_COMPRESSOR_SVD` - singular value decomposition
2175c7a4214aSPierre Jolivet 
217616a05f60SBarry Smith    Level: intermediate
217716a05f60SBarry Smith 
21782ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType`
2179c7a4214aSPierre Jolivet E*/
21809371c9d4SSatish Balay typedef enum {
21819371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA,
21829371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_FULL_ACA,
21839371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SVD
21849371c9d4SSatish Balay } MatHtoolCompressorType;
21852ef1f0ffSBarry Smith 
218698e73e17SPierre Jolivet /*E
218787497f52SBarry Smith      MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL`
218898e73e17SPierre Jolivet 
218998e73e17SPierre Jolivet     Values:
219087497f52SBarry Smith +   `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default) - axis computed via principle component analysis, split uniformly
219187497f52SBarry Smith .   `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC` - axis computed via principle component analysis, split barycentrically
219287497f52SBarry Smith .   `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR` - axis along the largest extent of the bounding box, split uniformly
219387497f52SBarry Smith -   `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically
219498e73e17SPierre Jolivet 
219516a05f60SBarry Smith    Level: intermediate
219616a05f60SBarry Smith 
21972ef1f0ffSBarry Smith     Note:
21982ef1f0ffSBarry Smith     Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types
219998e73e17SPierre Jolivet 
22002ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType`
220198e73e17SPierre Jolivet E*/
22029371c9d4SSatish Balay typedef enum {
22039371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_REGULAR,
22049371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC,
22059371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR,
22069371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC
22079371c9d4SSatish Balay } MatHtoolClusteringType;
2208c7a4214aSPierre Jolivet #endif
2209c7a4214aSPierre Jolivet 
221097969023SHong Zhang #ifdef PETSC_HAVE_MUMPS
2211014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt);
2212bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *);
2213b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal);
2214bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *);
2215bc6112feSHong Zhang 
2216ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *);
2217ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *);
2218ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *);
2219ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *);
22205c0bae8cSAshish Patel PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **);
222189a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat);
22220e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat);
222397969023SHong Zhang #endif
222423a5497aSJed Brown 
2225b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO
2226d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt);
2227b500a6b7SJose David Bermeol #endif
2228b500a6b7SJose David Bermeol 
2229d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO
2230d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt);
2231d305a81bSVasiliy Kozyrev #endif
2232d305a81bSVasiliy Kozyrev 
2233d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU
2234014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal);
2235d954db57SHong Zhang #endif
2236d954db57SHong Zhang 
2237fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST
2238fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *);
2239fb785984SHong Zhang #endif
2240fb785984SHong Zhang 
2241575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK
2242542aee0fSPieter Ghysels /*E
22432ef1f0ffSBarry Smith     MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK``
2244542aee0fSPieter Ghysels 
22452ef1f0ffSBarry Smith     Values:
22462ef1f0ffSBarry Smith +  `MAT_STRUMPACK_NATURAL` - use the current ordering
22472ef1f0ffSBarry Smith .  `MAT_STRUMPACK_METIS` - use MeTis to compute an ordering
22482ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PARMETIS` - use ParMeTis to compute an ordering
22492ef1f0ffSBarry Smith .  `MAT_STRUMPACK_SCOTCH` - use Scotch to compute an ordering
22502ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PTSCOTCH` - use parallel Scotch to compute an ordering
22512ef1f0ffSBarry Smith -  `MAT_STRUMPACK_RCM` - use an RCM ordering
22522ef1f0ffSBarry Smith 
225316a05f60SBarry Smith     Level: intermediate
225416a05f60SBarry Smith 
22552ef1f0ffSBarry Smith     Developer Note:
22562ef1f0ffSBarry Smith     Should be called `MatSTRUMPACKReorderingType`
22572ef1f0ffSBarry Smith 
22582ef1f0ffSBarry Smith .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetHSSRelTol()`, `MatSTRUMPACKSetReordering()`
2259542aee0fSPieter Ghysels E*/
22609371c9d4SSatish Balay typedef enum {
22619371c9d4SSatish Balay   MAT_STRUMPACK_NATURAL  = 0,
226234f43fa5SPieter Ghysels   MAT_STRUMPACK_METIS    = 1,
226334f43fa5SPieter Ghysels   MAT_STRUMPACK_PARMETIS = 2,
226434f43fa5SPieter Ghysels   MAT_STRUMPACK_SCOTCH   = 3,
226534f43fa5SPieter Ghysels   MAT_STRUMPACK_PTSCOTCH = 4,
22669371c9d4SSatish Balay   MAT_STRUMPACK_RCM      = 5
22679371c9d4SSatish Balay } MatSTRUMPACKReordering;
22682ef1f0ffSBarry Smith 
226934f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering);
2270575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool);
227134f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSRelTol(Mat, PetscReal);
2272d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSTRUMPACKSetHSSRelTol() (since version 3.9)") static inline PetscErrorCode MatSTRUMPACKSetHSSRelCompTol(Mat mat, PetscReal rtol)
2273d71ae5a4SJacob Faibussowitsch {
22749371c9d4SSatish Balay   return MatSTRUMPACKSetHSSRelTol(mat, rtol);
22759371c9d4SSatish Balay }
227634f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSAbsTol(Mat, PetscReal);
227734f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMinSepSize(Mat, PetscInt);
2278d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSTRUMPACKSetHSSMinSepSize() (since version 3.9)") static inline PetscErrorCode MatSTRUMPACKSetHSSMinSize(Mat mat, PetscInt hssminsize)
2279d71ae5a4SJacob Faibussowitsch {
22809371c9d4SSatish Balay   return MatSTRUMPACKSetHSSMinSepSize(mat, hssminsize);
22819371c9d4SSatish Balay }
228234f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMaxRank(Mat, PetscInt);
2283a36bf211SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSLeafSize(Mat, PetscInt);
2284575704cbSPieter Ghysels #endif
2285575704cbSPieter Ghysels 
2286b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool);
22872216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *);
2288d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatBindToCPU (since v3.13)") static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg)
2289d71ae5a4SJacob Faibussowitsch {
22909371c9d4SSatish Balay   return MatBindToCPU(A, flg);
22919371c9d4SSatish Balay }
229265a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool);
2293e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *);
2294e7e92044SBarry Smith 
2295aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA
22963f9c0db1SPaul Mullowney /*E
22972ef1f0ffSBarry Smith     MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU)
22982692e278SPaul Mullowney     matrices.
2299e057df02SPaul Mullowney 
23002ef1f0ffSBarry Smith     Values:
230187497f52SBarry Smith +   `MAT_CUSPARSE_CSR` - Compressed Sparse Row
230287497f52SBarry Smith .   `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later).
230387497f52SBarry Smith -   `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later).
2304e057df02SPaul Mullowney 
2305e057df02SPaul Mullowney     Level: intermediate
2306e057df02SPaul Mullowney 
23072ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation`
2308e057df02SPaul Mullowney E*/
2309e057df02SPaul Mullowney 
23109371c9d4SSatish Balay typedef enum {
23119371c9d4SSatish Balay   MAT_CUSPARSE_CSR,
23129371c9d4SSatish Balay   MAT_CUSPARSE_ELL,
23139371c9d4SSatish Balay   MAT_CUSPARSE_HYB
23149371c9d4SSatish Balay } MatCUSPARSEStorageFormat;
2315e057df02SPaul Mullowney 
2316e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */
2317e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[];
2318e057df02SPaul Mullowney 
23193f9c0db1SPaul Mullowney /*E
23202ef1f0ffSBarry Smith     MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU)
23212692e278SPaul Mullowney     matrices whose operation should use a particular storage format.
2322e057df02SPaul Mullowney 
23232ef1f0ffSBarry Smith     Values:
232487497f52SBarry Smith +   `MAT_CUSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel MatMult
232587497f52SBarry Smith .   `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel MatMult
232687497f52SBarry Smith .   `MAT_CUSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) MatMult
23272ef1f0ffSBarry Smith -   `MAT_CUSPARSE_ALL` - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices
2328e057df02SPaul Mullowney 
2329e057df02SPaul Mullowney     Level: intermediate
2330e057df02SPaul Mullowney 
23312ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat`
2332e057df02SPaul Mullowney E*/
23339371c9d4SSatish Balay typedef enum {
23349371c9d4SSatish Balay   MAT_CUSPARSE_MULT_DIAG,
23359371c9d4SSatish Balay   MAT_CUSPARSE_MULT_OFFDIAG,
23369371c9d4SSatish Balay   MAT_CUSPARSE_MULT,
23379371c9d4SSatish Balay   MAT_CUSPARSE_ALL
23389371c9d4SSatish Balay } MatCUSPARSEFormatOperation;
2339e057df02SPaul Mullowney 
234010e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
234110e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2342e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat);
2343365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool);
23445f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
23455f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
23465f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **);
23475f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **);
23485f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **);
23495f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **);
23505f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **);
23515f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **);
2352637a0070SStefano Zampini 
2353637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
2354637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
2355637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **);
2356637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **);
2357637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **);
2358637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **);
2359637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **);
2360637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **);
2361637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *);
2362d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *);
2363637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat);
23643d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *);
23652d1451d4SHong Zhang 
23662d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
23672d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
23689ae82921SPaul Mullowney #endif
23699ae82921SPaul Mullowney 
237047d993e7Ssuyashtn #ifdef PETSC_HAVE_HIP
237147d993e7Ssuyashtn /*E
23722ef1f0ffSBarry Smith     MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU)
237347d993e7Ssuyashtn     matrices.
237447d993e7Ssuyashtn 
23752ef1f0ffSBarry Smith     Values:
23762ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_CSR` - Compressed Sparse Row
23772ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_ELL` - Ellpack
23782ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format
237947d993e7Ssuyashtn 
238016a05f60SBarry Smith     Level: intermediate
238116a05f60SBarry Smith 
23822ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation`
238347d993e7Ssuyashtn E*/
238447d993e7Ssuyashtn 
238547d993e7Ssuyashtn typedef enum {
238647d993e7Ssuyashtn   MAT_HIPSPARSE_CSR,
238747d993e7Ssuyashtn   MAT_HIPSPARSE_ELL,
238847d993e7Ssuyashtn   MAT_HIPSPARSE_HYB
238947d993e7Ssuyashtn } MatHIPSPARSEStorageFormat;
239047d993e7Ssuyashtn 
239147d993e7Ssuyashtn /* these will be strings associated with enumerated type defined above */
239247d993e7Ssuyashtn PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[];
239347d993e7Ssuyashtn 
239447d993e7Ssuyashtn /*E
23952ef1f0ffSBarry Smith     MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU)
239647d993e7Ssuyashtn     matrices whose operation should use a particular storage format.
239747d993e7Ssuyashtn 
23982ef1f0ffSBarry Smith     Values:
23992ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()`
2400eb495b2aSPierre Jolivet .   `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel `MatMult()`
24012ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()`
24022ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_ALL` - sets the storage format for all HIPSPARSE (GPU) matrices
24032ef1f0ffSBarry Smith 
240416a05f60SBarry Smith     Level: intermediate
240516a05f60SBarry Smith 
24062ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat`
240747d993e7Ssuyashtn E*/
240847d993e7Ssuyashtn typedef enum {
240947d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_DIAG,
241047d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_OFFDIAG,
241147d993e7Ssuyashtn   MAT_HIPSPARSE_MULT,
241247d993e7Ssuyashtn   MAT_HIPSPARSE_ALL
241347d993e7Ssuyashtn } MatHIPSPARSEFormatOperation;
241447d993e7Ssuyashtn 
241547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
241647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
241747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat);
241847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool);
241947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
242047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
242147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **);
242247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **);
242347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **);
242447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **);
242547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **);
242647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **);
242747d993e7Ssuyashtn 
242847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
242947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
243047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **);
243147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **);
243247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **);
243347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **);
243447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **);
243547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **);
243647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *);
243747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *);
243847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat);
24393d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *);
244047d993e7Ssuyashtn #endif
244147d993e7Ssuyashtn 
2442d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL)
2443d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2444d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2445d67ff14aSKarl Rupp #endif
2446d67ff14aSKarl Rupp 
244754efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW)
2448014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec);
2449014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec);
24502a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *);
245154efbe56SHong Zhang #endif
245254efbe56SHong Zhang 
2453d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
2454d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2455d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt);
2456d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *);
2457d24d4204SJose E. Roman #endif
2458d24d4204SJose E. Roman 
2459014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *);
2460014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *);
2461014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]);
2462014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]);
2463014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***);
2464014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *);
246519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType);
2466014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]);
2467014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat);
2468d8588912SDave May 
24694325cce7SMatthew G Knepley PETSC_EXTERN PetscErrorCode MatChop(Mat, PetscReal);
2470e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *);
24714325cce7SMatthew G Knepley 
2472b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **);
247353dd7562SDmitry Karpeev 
2474c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat);
2475c094ef40SMatthew G. Knepley 
2476539c167fSBarry Smith PETSC_INTERN PetscErrorCode MatHeaderMerge(Mat, Mat *);
2477539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *);
24781a2c6b5cSJunchao Zhang 
24797ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *);
248072833a62Smarkadams4 
24812d776b49SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, Mat *);
2482dec0b466SHong Zhang PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat);
2483ad6ad4e1SHansol  Suh 
2484*d16ceb75SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *);
248523a5497aSJed Brown #endif
2486