xref: /petsc/include/petscmat.h (revision d5b43468fb8780a8feea140ccd6fa3e6a50411cc)
12eac72dbSBarry Smith /*
22eac72dbSBarry Smith      Include file for the matrix component of PETSc
32eac72dbSBarry Smith */
426bd1501SBarry Smith #ifndef PETSCMAT_H
526bd1501SBarry Smith #define PETSCMAT_H
6ac09b921SBarry Smith 
72c8e378dSBarry Smith #include <petscvec.h>
82eac72dbSBarry Smith 
9ac09b921SBarry Smith /* SUBMANSEC = Mat */
10ac09b921SBarry Smith 
11d9274352SBarry Smith /*S
128f6c3df8SBarry Smith      Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without
138f6c3df8SBarry Smith            an explicit sparse representation (such as matrix-free operators)
142eac72dbSBarry Smith 
15d91e6319SBarry Smith    Level: beginner
16d91e6319SBarry Smith 
17db781477SPatrick Sanan .seealso: `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()`
18d9274352SBarry Smith S*/
19d9274352SBarry Smith typedef struct _p_Mat *Mat;
20d9274352SBarry Smith 
2176bdecfbSBarry Smith /*J
228f6c3df8SBarry Smith     MatType - String with the name of a PETSc matrix type
23d9274352SBarry Smith 
24d9274352SBarry Smith    Level: beginner
25d9274352SBarry Smith 
26db781477SPatrick Sanan .seealso: `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()`
2776bdecfbSBarry Smith J*/
2819fd82e9SBarry Smith typedef const char *MatType;
29273d9f13SBarry Smith #define MATSAME                      "same"
305a11e1b2SBarry Smith #define MATMAIJ                      "maij"
31273d9f13SBarry Smith #define MATSEQMAIJ                   "seqmaij"
32273d9f13SBarry Smith #define MATMPIMAIJ                   "mpimaij"
3349bd79ccSDebojyoti Ghosh #define MATKAIJ                      "kaij"
3449bd79ccSDebojyoti Ghosh #define MATSEQKAIJ                   "seqkaij"
3549bd79ccSDebojyoti Ghosh #define MATMPIKAIJ                   "mpikaij"
36273d9f13SBarry Smith #define MATIS                        "is"
375a11e1b2SBarry Smith #define MATAIJ                       "aij"
38273d9f13SBarry Smith #define MATSEQAIJ                    "seqaij"
39273d9f13SBarry Smith #define MATMPIAIJ                    "mpiaij"
405a11e1b2SBarry Smith #define MATAIJCRL                    "aijcrl"
415a11e1b2SBarry Smith #define MATSEQAIJCRL                 "seqaijcrl"
425a11e1b2SBarry Smith #define MATMPIAIJCRL                 "mpiaijcrl"
439ae82921SPaul Mullowney #define MATAIJCUSPARSE               "aijcusparse"
449ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE            "seqaijcusparse"
459ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE            "mpiaijcusparse"
4647d993e7Ssuyashtn #define MATAIJHIPSPARSE              "aijhipsparse"
4747d993e7Ssuyashtn #define MATSEQAIJHIPSPARSE           "seqaijhipsparse"
4847d993e7Ssuyashtn #define MATMPIAIJHIPSPARSE           "mpiaijhipsparse"
498c3ff71bSJunchao Zhang #define MATAIJKOKKOS                 "aijkokkos"
508c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS              "seqaijkokkos"
518c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS              "mpiaijkokkos"
52d67ff14aSKarl Rupp #define MATAIJVIENNACL               "aijviennacl"
53d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL            "seqaijviennacl"
54d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL            "mpiaijviennacl"
555a11e1b2SBarry Smith #define MATAIJPERM                   "aijperm"
565a11e1b2SBarry Smith #define MATSEQAIJPERM                "seqaijperm"
575a11e1b2SBarry Smith #define MATMPIAIJPERM                "mpiaijperm"
584dfdc2d9SRichard Tran Mills #define MATAIJSELL                   "aijsell"
594dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL                "seqaijsell"
604dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL                "mpiaijsell"
614a2a386eSRichard Tran Mills #define MATAIJMKL                    "aijmkl"
624a2a386eSRichard Tran Mills #define MATSEQAIJMKL                 "seqaijmkl"
634a2a386eSRichard Tran Mills #define MATMPIAIJMKL                 "mpiaijmkl"
64b5b72c8aSIrina Sokolova #define MATBAIJMKL                   "baijmkl"
65b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL                "seqbaijmkl"
66b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL                "mpibaijmkl"
67273d9f13SBarry Smith #define MATSHELL                     "shell"
68c1fff1c6SRichard Tran Mills #define MATCENTERING                 "centering"
695a11e1b2SBarry Smith #define MATDENSE                     "dense"
70637a0070SStefano Zampini #define MATDENSECUDA                 "densecuda"
7147d993e7Ssuyashtn #define MATDENSEHIP                  "densehip"
72209238afSKris Buschelman #define MATSEQDENSE                  "seqdense"
73bfc799aaSStefano Zampini #define MATSEQDENSECUDA              "seqdensecuda"
7447d993e7Ssuyashtn #define MATSEQDENSEHIP               "seqdensehip"
75273d9f13SBarry Smith #define MATMPIDENSE                  "mpidense"
76637a0070SStefano Zampini #define MATMPIDENSECUDA              "mpidensecuda"
7747d993e7Ssuyashtn #define MATMPIDENSEHIP               "mpidensehip"
78db31f6deSJed Brown #define MATELEMENTAL                 "elemental"
79d24d4204SJose E. Roman #define MATSCALAPACK                 "scalapack"
805a11e1b2SBarry Smith #define MATBAIJ                      "baij"
81273d9f13SBarry Smith #define MATSEQBAIJ                   "seqbaij"
82273d9f13SBarry Smith #define MATMPIBAIJ                   "mpibaij"
83273d9f13SBarry Smith #define MATMPIADJ                    "mpiadj"
845a11e1b2SBarry Smith #define MATSBAIJ                     "sbaij"
85273d9f13SBarry Smith #define MATSEQSBAIJ                  "seqsbaij"
86273d9f13SBarry Smith #define MATMPISBAIJ                  "mpisbaij"
87cebc7f6cSBarry Smith #define MATMFFD                      "mffd"
88c8a8475eSBarry Smith #define MATNORMAL                    "normal"
89c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN           "normalh"
90ab92ecdeSBarry Smith #define MATLRC                       "lrc"
912a6744ebSBarry Smith #define MATSCATTER                   "scatter"
92421e10b8SBarry Smith #define MATBLOCKMAT                  "blockmat"
93793850ffSBarry Smith #define MATCOMPOSITE                 "composite"
941f8c7532SHong Zhang #define MATFFT                       "fft"
951f8c7532SHong Zhang #define MATFFTW                      "fftw"
96e133240eSMatthew G Knepley #define MATSEQCUFFT                  "seqcufft"
9747d993e7Ssuyashtn #define MATSEQHIPFFT                 "seqhipfft"
98013e2dc7SBarry Smith #define MATTRANSPOSEMAT              PETSC_DEPRECATED_MACRO("GCC warning \"MATTRANSPOSEMAT macro is deprecated use MATTRANSPOSEVIRTUAL (since version 3.18)\"") "transpose"
99013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL          "transpose"
100013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose"
10172ca8751SBarry Smith #define MATSCHURCOMPLEMENT           "schurcomplement"
1021d6018f0SLisandro Dalcin #define MATPYTHON                    "python"
10363c07aadSStefano Zampini #define MATHYPRE                     "hypre"
104f91d8e95SBarry Smith #define MATHYPRESTRUCT               "hyprestruct"
105a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT              "hypresstruct"
106ee1cef2cSJed Brown #define MATSUBMATRIX                 "submatrix"
1072c0dbf93SJed Brown #define MATLOCALREF                  "localref"
108d8588912SDave May #define MATNEST                      "nest"
109c094ef40SMatthew G. Knepley #define MATPREALLOCATOR              "preallocator"
110d4002b98SHong Zhang #define MATSELL                      "sell"
111d4002b98SHong Zhang #define MATSEQSELL                   "seqsell"
112d4002b98SHong Zhang #define MATMPISELL                   "mpisell"
113a3b2e22bSHong Zhang #define MATDUMMY                     "dummy"
114cd929ea3SAlp Dener #define MATLMVM                      "lmvm"
11578e4361aSAlp Dener #define MATLMVMDFP                   "lmvmdfp"
11678e4361aSAlp Dener #define MATLMVMBFGS                  "lmvmbfgs"
11778e4361aSAlp Dener #define MATLMVMSR1                   "lmvmsr1"
118864588a7SAlp Dener #define MATLMVMBROYDEN               "lmvmbroyden"
119864588a7SAlp Dener #define MATLMVMBADBROYDEN            "lmvmbadbroyden"
120864588a7SAlp Dener #define MATLMVMSYMBROYDEN            "lmvmsymbroyden"
121864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN         "lmvmsymbadbroyden"
122864588a7SAlp Dener #define MATLMVMDIAGBROYDEN           "lmvmdiagbroyden"
1233423f386SBarry Smith #define MATCONSTANTDIAGONAL          "constantdiagonal"
124c7a4214aSPierre Jolivet #define MATHTOOL                     "htool"
12553022affSStefano Zampini #define MATH2OPUS                    "h2opus"
126773941d6SBarry Smith 
12776bdecfbSBarry Smith /*J
1283ca39a21SBarry Smith     MatSolverType - String with the name of a PETSc matrix solver type.
1299989ab13SBarry Smith 
130c2b89b5dSBarry Smith     For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc
1319989ab13SBarry Smith 
1329989ab13SBarry Smith    Level: beginner
1339989ab13SBarry Smith 
1343f498edaSToby Isaac    Notes:  MATSOLVERUMFPACK, MATSOLVERCHOLMOD, MATSOLVERKLU, MATSOLVERSPQR form the SuiteSparse package for which you can use --download-suitesparse
135c7ccbb75SBarry Smith 
136db781477SPatrick Sanan .seealso: `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()`
13776bdecfbSBarry Smith J*/
138ea799195SBarry Smith typedef const char *MatSolverType;
1392692d6eeSBarry Smith #define MATSOLVERSUPERLU         "superlu"
1402692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST    "superlu_dist"
14108f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK       "strumpack"
1422692d6eeSBarry Smith #define MATSOLVERUMFPACK         "umfpack"
14320db9a53SJed Brown #define MATSOLVERCHOLMOD         "cholmod"
144d89f5e7aSBarry Smith #define MATSOLVERKLU             "klu"
145418810c4SBarry Smith #define MATSOLVERSPARSEELEMENTAL "sparseelemental"
146d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL       "elemental"
147d24d4204SJose E. Roman #define MATSOLVERSCALAPACK       "scalapack"
1482692d6eeSBarry Smith #define MATSOLVERESSL            "essl"
1492692d6eeSBarry Smith #define MATSOLVERLUSOL           "lusol"
1502692d6eeSBarry Smith #define MATSOLVERMUMPS           "mumps"
151d615f992SSatish Balay #define MATSOLVERMKL_PARDISO     "mkl_pardiso"
152d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO    "mkl_cpardiso"
1532692d6eeSBarry Smith #define MATSOLVERPASTIX          "pastix"
1542692d6eeSBarry Smith #define MATSOLVERMATLAB          "matlab"
1552692d6eeSBarry Smith #define MATSOLVERPETSC           "petsc"
1562692d6eeSBarry Smith #define MATSOLVERBAS             "bas"
1579ae82921SPaul Mullowney #define MATSOLVERCUSPARSE        "cusparse"
158bddcd29dSMark Adams #define MATSOLVERCUSPARSEBAND    "cusparseband"
159bfc799aaSStefano Zampini #define MATSOLVERCUDA            "cuda"
16047d993e7Ssuyashtn #define MATSOLVERHIPSPARSE       "hipsparse"
16147d993e7Ssuyashtn #define MATSOLVERHIPSPARSEBAND   "hipsparseband"
16247d993e7Ssuyashtn #define MATSOLVERHIP             "hip"
163930e68a5SMark Adams #define MATSOLVERKOKKOS          "kokkos"
1648f7e8f9dSMark Adams #define MATSOLVERKOKKOSDEVICE    "kokkosdevice"
165a2fc1e05SToby Isaac #define MATSOLVERSPQR            "spqr"
166c0cdd4a1SDahai Guo 
167b24902e0SBarry Smith /*E
168b24902e0SBarry Smith     MatFactorType - indicates what type of factorization is requested
169b24902e0SBarry Smith 
170b24902e0SBarry Smith     Level: beginner
171b24902e0SBarry Smith 
172af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
173b24902e0SBarry Smith 
174db781477SPatrick Sanan .seealso: `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()`
175b24902e0SBarry Smith E*/
1769371c9d4SSatish Balay typedef enum {
1779371c9d4SSatish Balay   MAT_FACTOR_NONE,
1789371c9d4SSatish Balay   MAT_FACTOR_LU,
1799371c9d4SSatish Balay   MAT_FACTOR_CHOLESKY,
1809371c9d4SSatish Balay   MAT_FACTOR_ILU,
1819371c9d4SSatish Balay   MAT_FACTOR_ICC,
1829371c9d4SSatish Balay   MAT_FACTOR_ILUDT,
1839371c9d4SSatish Balay   MAT_FACTOR_QR,
1849371c9d4SSatish Balay   MAT_FACTOR_NUM_TYPES
1859371c9d4SSatish Balay } MatFactorType;
186014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[];
187e92e720dSBarry Smith 
188ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *);
189ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *);
190f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *);
191d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatFactorGetCanUseOrdering() (since version 3.15)") static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b)
192d71ae5a4SJacob Faibussowitsch {
1939371c9d4SSatish Balay   return MatFactorGetCanUseOrdering(A, b);
1949371c9d4SSatish Balay }
195ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *);
196014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *);
1977abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType);
1982430ea28SJose E. Roman PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatSolverFunction)(Mat, MatFactorType, Mat *);
1992430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode            MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFunction);
2002430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode            MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFunction *);
20125ef9dfeSBarry Smith typedef MatSolverType MatSolverPackage PETSC_DEPRECATED_TYPEDEF("Use MatSolverType (since version 3.9)");
202d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSolverTypeRegister() (since version 3.9)") static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFunction f)
203d71ae5a4SJacob Faibussowitsch {
2049371c9d4SSatish Balay   return MatSolverTypeRegister(stype, mtype, ftype, f);
2059371c9d4SSatish Balay }
206d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSolverTypeGet() (since version 3.9)") static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFunction *f)
207d71ae5a4SJacob Faibussowitsch {
2089371c9d4SSatish Balay   return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f);
2099371c9d4SSatish Balay }
2109989ab13SBarry Smith 
2114222ddf1SHong Zhang /*E
2124222ddf1SHong Zhang     MatProductType - indicates what type of matrix product is requested
2134222ddf1SHong Zhang 
2144222ddf1SHong Zhang     Level: beginner
2154222ddf1SHong Zhang 
216db781477SPatrick Sanan .seealso: `MatProductSetType()`
2174222ddf1SHong Zhang E*/
2189371c9d4SSatish Balay typedef enum {
2199371c9d4SSatish Balay   MATPRODUCT_UNSPECIFIED = 0,
2209371c9d4SSatish Balay   MATPRODUCT_AB,
2219371c9d4SSatish Balay   MATPRODUCT_AtB,
2229371c9d4SSatish Balay   MATPRODUCT_ABt,
2239371c9d4SSatish Balay   MATPRODUCT_PtAP,
2249371c9d4SSatish Balay   MATPRODUCT_RARt,
2259371c9d4SSatish Balay   MATPRODUCT_ABC
2269371c9d4SSatish Balay } MatProductType;
227544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[];
2284222ddf1SHong Zhang 
2294222ddf1SHong Zhang /*J
2304222ddf1SHong Zhang     MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation
2314222ddf1SHong Zhang 
2324222ddf1SHong Zhang    Level: beginner
2334222ddf1SHong Zhang 
234db781477SPatrick Sanan .seealso: `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType`
2354222ddf1SHong Zhang J*/
2364222ddf1SHong Zhang typedef const char *MatProductAlgorithm;
2373e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT         "default"
2383e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED          "sorted"
2393e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE        "scalable"
2403e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST    "scalable_fast"
2413e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP            "heap"
2423e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP           "btheap"
2433e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED     "llcondensed"
2443e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE        "rowmerge"
2453e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT    "outerproduct"
2463e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB             "at*b"
2473e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP             "rap"
2483e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE     "nonscalable"
2493e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI          "seqmpi"
2503e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND         "backend"
2513e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING     "overlapping"
2523e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED          "merged"
2533e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE       "allatonce"
2543e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged"
2553e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV      "allgatherv"
2563e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC          "cyclic"
2573e662e0bSHong Zhang #if defined(PETSC_HAVE_HYPRE)
2583e662e0bSHong Zhang   #define MATPRODUCTALGORITHMHYPRE "hypre"
2593e662e0bSHong Zhang #endif
2604222ddf1SHong Zhang 
2614222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *);
2624222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat);
2634222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType);
2644222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm);
2654222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal);
2664222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat);
2674222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat);
2684222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat);
2694222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat);
2704417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat);
2716718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer);
272c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *);
273c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *);
2744222ddf1SHong Zhang 
275c06d978dSMatthew Knepley /* Logging support */
2760700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */
277014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID;
278335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID;
279014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID;
280014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID;
281014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID;
282014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID;
283014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID;
284014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID;
285c06d978dSMatthew Knepley 
286ceb03754SKris Buschelman /*E
2877dae84e0SHong Zhang     MatReuse - Indicates if matrices obtained from a previous call to MatCreateSubMatrices(), MatCreateSubMatrix(), MatConvert() or several other functions
288cf37664fSBarry Smith      are to be reused to store the new matrix values.
289cf37664fSBarry Smith 
290cf37664fSBarry Smith $  MAT_INITIAL_MATRIX - create a new matrix
291cf37664fSBarry Smith $  MAT_REUSE_MATRIX - reuse the matrix created with a previous call that used MAT_INITIAL_MATRIX
292cf37664fSBarry Smith $  MAT_INPLACE_MATRIX - replace the first input matrix with the new matrix (not applicable to all functions)
293cf37664fSBarry Smith $  MAT_IGNORE_MATRIX - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions)
294ceb03754SKris Buschelman 
295ceb03754SKris Buschelman     Level: beginner
296ceb03754SKris Buschelman 
297af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
298ceb03754SKris Buschelman 
299db781477SPatrick Sanan .seealso: `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()`
300ceb03754SKris Buschelman E*/
3019371c9d4SSatish Balay typedef enum {
3029371c9d4SSatish Balay   MAT_INITIAL_MATRIX,
3039371c9d4SSatish Balay   MAT_REUSE_MATRIX,
3049371c9d4SSatish Balay   MAT_IGNORE_MATRIX,
3059371c9d4SSatish Balay   MAT_INPLACE_MATRIX
3069371c9d4SSatish Balay } MatReuse;
307ceb03754SKris Buschelman 
3085494a064SHong Zhang /*E
3097dae84e0SHong Zhang     MatCreateSubMatrixOption - Indicates if matrices obtained from a call to MatCreateSubMatrices()
310446c23c1SPierre Jolivet      include the matrix values. Currently it is only used by MatGetSeqNonzeroStructure().
3115494a064SHong Zhang 
3125494a064SHong Zhang     Level: beginner
3135494a064SHong Zhang 
314db781477SPatrick Sanan .seealso: `MatGetSeqNonzeroStructure()`
3155494a064SHong Zhang E*/
3169371c9d4SSatish Balay typedef enum {
3179371c9d4SSatish Balay   MAT_DO_NOT_GET_VALUES,
3189371c9d4SSatish Balay   MAT_GET_VALUES
3199371c9d4SSatish Balay } MatCreateSubMatrixOption;
3205494a064SHong Zhang 
321607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void);
322c06d978dSMatthew Knepley 
323014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *);
324014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt);
32519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType);
3260d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *);
3270d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType);
328014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat);
329fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]);
330bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat));
33123bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]);
332014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]);
33326cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]);
33426cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]);
335014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]);
336014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]);
33784d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool);
338f69a0ea3SMatthew Knepley 
339140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList;
340140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList;
341140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList;
34228988994SBarry Smith 
3433b224e63SBarry Smith /*E
344aa6c7ce3SBarry Smith     MatStructure - Indicates if two matrices have the same nonzero structure
3453b224e63SBarry Smith 
3463b224e63SBarry Smith     Level: beginner
3473b224e63SBarry Smith 
348531d0c6aSBarry Smith $  SAME_NONZERO_PATTERN  - the two matrices have identical nonzero patterns
349531d0c6aSBarry Smith $  DIFFERENT_NONZERO_PATTERN - the two matrices may have different nonzero patterns
350531d0c6aSBarry Smith $  SUBSET_NONZERO_PATTERN - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix
351531d0c6aSBarry Smith $  UNKNOWN_NONZERO_PATTERN - there is no known relationship between the nonzero patterns. In this case the implementations may try to detect a relationship to optimize the operation
352531d0c6aSBarry Smith 
353531d0c6aSBarry Smith    Developer Notes:
354d60b7d5cSBarry Smith      Any additions/changes here MUST also be made in src/mat/f90-mod/petscmat.h
3553b224e63SBarry Smith 
356db781477SPatrick Sanan .seealso: `MatCopy()`, `MatAXPY()`, `MatAYPX()`
3573b224e63SBarry Smith E*/
3589371c9d4SSatish Balay typedef enum {
3599371c9d4SSatish Balay   DIFFERENT_NONZERO_PATTERN,
3609371c9d4SSatish Balay   SUBSET_NONZERO_PATTERN,
3619371c9d4SSatish Balay   SAME_NONZERO_PATTERN,
3629371c9d4SSatish Balay   UNKNOWN_NONZERO_PATTERN
3639371c9d4SSatish Balay } MatStructure;
364d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[];
3653b224e63SBarry Smith 
3669779e05dSSatish Balay #if defined                 PETSC_HAVE_MKL_SPARSE
367ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
368ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
36980095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
370ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
37180095d54SIrina Sokolova #endif
372cd929ea3SAlp Dener 
373d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
374d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
375d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]);
376d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
37780095d54SIrina Sokolova 
378014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
379014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
380014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
381014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
382014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
3838f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
3846a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]);
385014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *);
3863b00a383SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *);
3873b00a383SHong Zhang 
388014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
389014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
390014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
3917e8381f9SStefano Zampini 
392e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]);
39382a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]);
3947e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode);
395d21a29f3SJed Brown 
396014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *);
397014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
398d21a29f3SJed Brown 
399014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
400014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
40138f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
402014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4034cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]);
404dfb205c3SBarry Smith 
405014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *);
406c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *);
407014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *);
408c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *);
409986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *);
410267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *);
411c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *);
412014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
413014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
414c0cdd4a1SDahai Guo 
415014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *);
416014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter);
417014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *);
418014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *);
419014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat);
420014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat);
4219371c9d4SSatish Balay typedef enum {
4229371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_RIGHT,
4239371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_LEFT
4249371c9d4SSatish Balay } MatCompositeMergeType;
4258c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType);
426014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *);
4279371c9d4SSatish Balay typedef enum {
4289371c9d4SSatish Balay   MAT_COMPOSITE_ADDITIVE,
4299371c9d4SSatish Balay   MAT_COMPOSITE_MULTIPLICATIVE
4309371c9d4SSatish Balay } MatCompositeType;
431014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType);
4326dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *);
4333b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure);
4343b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *);
4356d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *);
4368b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *);
43703049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *);
4386d7c1e57SBarry Smith 
43919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *);
440014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *);
441dedccee8SHong Zhang 
442014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *);
4438060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *);
444d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *);
44506511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *);
446fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *);
44765f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *);
44854e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *);
44954e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS);
450014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *);
4513423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *);
4521472f72bSBarry Smith 
453978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE)
454d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
455978814f1SStefano Zampini #endif
456978814f1SStefano Zampini 
457014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]);
458ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]);
4591d6018f0SLisandro Dalcin 
460846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat);
461014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat);
462014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *);
463e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *);
46421c89e3eSBarry Smith 
465014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat);
466014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat);
467014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat);
468014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *);
469014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *);
470713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **);
4710da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *);
472479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat);
4738a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *);
47499cafbc1SBarry Smith 
4758ed539a5SBarry Smith /* ------------------------------------------------------------*/
476014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
4778a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode);
478014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
479014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]);
480014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]);
481014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]);
48273a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom);
48384cb2905SBarry Smith 
4842ef4de8bSBarry Smith /*S
4852ef4de8bSBarry Smith      MatStencil - Data structure (C struct) for storing information about a single row or
48687497f52SBarry Smith         column of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()`
48762ef0227SBarry Smith 
48862ef0227SBarry Smith    The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored).
48987497f52SBarry Smith    The c represents the the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored.
49062ef0227SBarry Smith 
49187497f52SBarry Smith    For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`.
492be479b30SJed Brown 
49387497f52SBarry Smith    Fortran usage is different, see `MatSetValuesStencil()` for details.
4942ef4de8bSBarry Smith 
4952ef4de8bSBarry Smith    Level: beginner
4962ef4de8bSBarry Smith 
497db781477SPatrick Sanan .seealso: `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`
4982ef4de8bSBarry Smith S*/
499435da068SBarry Smith typedef struct {
500c1ac3661SBarry Smith   PetscInt k, j, i, c;
501435da068SBarry Smith } MatStencil;
5022ef4de8bSBarry Smith 
503014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
504014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
505014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt);
506435da068SBarry Smith 
507d91e6319SBarry Smith /*E
50887497f52SBarry Smith     MatAssemblyType - Indicates if the matrix is now to be used, for example in a solver, or if you plan
50962ef0227SBarry Smith      to continue to add or insert values to it
510d91e6319SBarry Smith 
511d91e6319SBarry Smith     Level: beginner
512d91e6319SBarry Smith 
513db781477SPatrick Sanan .seealso: `MatAssemblyBegin()`, `MatAssemblyEnd()`
514d91e6319SBarry Smith E*/
5159371c9d4SSatish Balay typedef enum {
5169371c9d4SSatish Balay   MAT_FLUSH_ASSEMBLY = 1,
5179371c9d4SSatish Balay   MAT_FINAL_ASSEMBLY = 0
5189371c9d4SSatish Balay } MatAssemblyType;
519014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType);
520014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType);
521014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *);
5224f9c727eSBarry Smith 
523d91e6319SBarry Smith /*E
524d91e6319SBarry Smith     MatOption - Options that may be set for a matrix and its behavior or storage
525d91e6319SBarry Smith 
526d91e6319SBarry Smith     Level: beginner
527d91e6319SBarry Smith 
52895452b02SPatrick Sanan    Developer Notes:
52995452b02SPatrick Sanan    Entries that are negative need not be called collectively by all processes.
530382164b0SBarry Smith 
53187497f52SBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
53287497f52SBarry Smith 
53387497f52SBarry Smith    Any additions/changes here must also be made in src/mat/interface/dlregismat.c in MatOptions[]
53487497f52SBarry Smith 
535db781477SPatrick Sanan .seealso: `MatSetOption()`
536d91e6319SBarry Smith E*/
5379371c9d4SSatish Balay typedef enum {
5389371c9d4SSatish Balay   MAT_OPTION_MIN                  = -3,
539c5e4d11fSDmitry Karpeev   MAT_UNUSED_NONZERO_LOCATION_ERR = -2,
54092d4d306SBarry Smith   MAT_ROW_ORIENTED                = -1,
541382164b0SBarry Smith   MAT_SYMMETRIC                   = 1,
542382164b0SBarry Smith   MAT_STRUCTURALLY_SYMMETRIC      = 2,
5438c78258cSHong Zhang   MAT_FORCE_DIAGONAL_ENTRIES      = 3,
544382164b0SBarry Smith   MAT_IGNORE_OFF_PROC_ENTRIES     = 4,
545382164b0SBarry Smith   MAT_USE_HASH_TABLE              = 5,
546382164b0SBarry Smith   MAT_KEEP_NONZERO_PATTERN        = 6,
547382164b0SBarry Smith   MAT_IGNORE_ZERO_ENTRIES         = 7,
548382164b0SBarry Smith   MAT_USE_INODES                  = 8,
549382164b0SBarry Smith   MAT_HERMITIAN                   = 9,
550382164b0SBarry Smith   MAT_SYMMETRY_ETERNAL            = 10,
551c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_LOCATION_ERR    = 11,
552382164b0SBarry Smith   MAT_IGNORE_LOWER_TRIANGULAR     = 12,
553382164b0SBarry Smith   MAT_ERROR_LOWER_TRIANGULAR      = 13,
554382164b0SBarry Smith   MAT_GETROW_UPPERTRIANGULAR      = 14,
555382164b0SBarry Smith   MAT_SPD                         = 15,
55692d4d306SBarry Smith   MAT_NO_OFF_PROC_ZERO_ROWS       = 16,
55792d4d306SBarry Smith   MAT_NO_OFF_PROC_ENTRIES         = 17,
55892d4d306SBarry Smith   MAT_NEW_NONZERO_LOCATIONS       = 18,
559c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_ALLOCATION_ERR  = 19,
560c5e4d11fSDmitry Karpeev   MAT_SUBSET_OFF_PROC_ENTRIES     = 20,
561c10200c1SHong Zhang   MAT_SUBMAT_SINGLEIS             = 21,
562957cac9fSHong Zhang   MAT_STRUCTURE_ONLY              = 22,
563071fcb05SBarry Smith   MAT_SORTED_FULL                 = 23,
5641a2c6b5cSJunchao Zhang   MAT_FORM_EXPLICIT_TRANSPOSE     = 24,
565b94d7dedSBarry Smith   MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25,
566b94d7dedSBarry Smith   MAT_SPD_ETERNAL                 = 26,
5679371c9d4SSatish Balay   MAT_OPTION_MAX                  = 27
5689371c9d4SSatish Balay } MatOption;
569e057df02SPaul Mullowney 
5700f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions;
571014dd563SJed Brown PETSC_EXTERN PetscErrorCode     MatSetOption(Mat, MatOption, PetscBool);
5727d68702bSBarry Smith PETSC_EXTERN PetscErrorCode     MatGetOption(Mat, MatOption, PetscBool *);
573856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode     MatPropagateSymmetryOptions(Mat, Mat);
57419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode     MatGetType(Mat, MatType *);
57584cb2905SBarry Smith 
576014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
577014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
578014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
579014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRowUpperTriangular(Mat);
580014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRowUpperTriangular(Mat);
581014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetColumnVector(Mat, Vec, PetscInt);
5828c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArray(Mat, PetscScalar *[]);
5838f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]);
584d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]);
5858c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArray(Mat, PetscScalar *[]);
5868f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]);
587d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]);
58821e72a00SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *);
589bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
5904099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetType(Mat, MatType);
591ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode    MatSeqAIJKron(Mat, Mat, MatReuse, Mat *);
592388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode    MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *));
5934099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList;
594cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJGetArray(Mat, PetscScalar *[]);
595cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJRestoreArray(Mat, PetscScalar *[]);
5968397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJGetArray(Mat, PetscScalar *[]);
5978397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]);
5988c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArray(Mat, PetscScalar *[]);
5998c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArray(Mat, PetscScalar *[]);
600d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDensePlaceArray(Mat, const PetscScalar[]);
601d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseReplaceArray(Mat, const PetscScalar[]);
602d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseResetArray(Mat);
6038572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArrayRead(Mat, const PetscScalar *[]);
6048572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayRead(Mat, const PetscScalar *[]);
6056947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWrite(Mat, PetscScalar *[]);
6066947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWrite(Mat, PetscScalar *[]);
607014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSize(Mat, PetscInt *);
608014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSize(Mat, PetscInt);
609014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSizes(Mat, PetscInt *, PetscInt *);
610014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizes(Mat, PetscInt, PetscInt);
61133d57670SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizesFromMats(Mat, Mat, Mat);
6120da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode    MatSetVariableBlockSizes(Mat, PetscInt, PetscInt *);
6130da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode    MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt **);
6140da83c2eSBarry Smith 
61586aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]);
61686aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]);
6176947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *);
6186947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *);
6196947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *);
6206947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *);
6216947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *);
6226947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *);
623a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
6245ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *);
6251620fd73SBarry Smith 
626014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec);
627014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec);
628014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec);
629014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec);
630014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec);
631014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *);
632014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *);
633014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec);
634014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec);
635014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat);
636bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat);
637eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat);
638f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec);
639f5edf698SHong Zhang 
640d91e6319SBarry Smith /*E
641d91e6319SBarry Smith     MatDuplicateOption - Indicates if a duplicated sparse matrix should have
642d91e6319SBarry Smith   its numerical values copied over or just its nonzero structure.
643d91e6319SBarry Smith 
644d91e6319SBarry Smith     Level: beginner
645d91e6319SBarry Smith 
646af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
647d91e6319SBarry Smith 
64887497f52SBarry Smith $   `MAT_DO_NOT_COPY_VALUES`    - Create a matrix using the same nonzero pattern as the original matrix,
6490018da39SRichard Tran Mills $                               with zeros for the numerical values.
65087497f52SBarry Smith $   `MAT_COPY_VALUES`           - Create a matrix with the same nonzero pattern as the original matrix
6510018da39SRichard Tran Mills $                               and with the same numerical values.
65287497f52SBarry Smith $   `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix
6530018da39SRichard Tran Mills $                               and does not copy it, using zeros for the numerical values. The parent and
6540018da39SRichard Tran Mills $                               child matrices will share their index (i and j) arrays, and you cannot
6550018da39SRichard Tran Mills $                               insert new nonzero entries into either matrix.
6560018da39SRichard Tran Mills 
65787497f52SBarry Smith   Note:
65887497f52SBarry Smith   Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in
65987497f52SBarry Smith   this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified.
66070dcbbb9SBarry Smith 
661db781477SPatrick Sanan .seealso: `MatDuplicate()`
662d91e6319SBarry Smith E*/
6639371c9d4SSatish Balay typedef enum {
6649371c9d4SSatish Balay   MAT_DO_NOT_COPY_VALUES,
6659371c9d4SSatish Balay   MAT_COPY_VALUES,
6669371c9d4SSatish Balay   MAT_SHARE_NONZERO_PATTERN
6679371c9d4SSatish Balay } MatDuplicateOption;
6682e8a6d31SBarry Smith 
66919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *);
670014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *);
67194a9d846SBarry Smith 
672014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure);
673014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer);
674014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *);
675014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *);
676014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *);
677014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *);
678014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *);
679b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *);
680b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *);
681014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *);
682014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer);
6837b80b807SBarry Smith 
6841a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
6851a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
6861a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
6871a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
688d4fbbf0eSBarry Smith 
689d91e6319SBarry Smith /*S
69087497f52SBarry Smith      MatInfo - Context of matrix information, used with `MatGetInfo()`
691d91e6319SBarry Smith 
69287497f52SBarry Smith    In Fortran this is simply a double precision array of dimension `MAT_INFO_SIZE`
693d91e6319SBarry Smith 
694d91e6319SBarry Smith    Level: intermediate
695d91e6319SBarry Smith 
696db781477SPatrick Sanan .seealso: `MatGetInfo()`, `MatInfoType`
697d91e6319SBarry Smith S*/
6984e220ebcSLois Curfman McInnes typedef struct {
699b0a32e0cSBarry Smith   PetscLogDouble block_size;                          /* block size */
700b0a32e0cSBarry Smith   PetscLogDouble nz_allocated, nz_used, nz_unneeded;  /* number of nonzeros */
701b0a32e0cSBarry Smith   PetscLogDouble memory;                              /* memory allocated */
702b0a32e0cSBarry Smith   PetscLogDouble assemblies;                          /* number of matrix assemblies called */
703b0a32e0cSBarry Smith   PetscLogDouble mallocs;                             /* number of mallocs during MatSetValues() */
704b0a32e0cSBarry Smith   PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */
705b0a32e0cSBarry Smith   PetscLogDouble factor_mallocs;                      /* number of mallocs during factorization */
7064e220ebcSLois Curfman McInnes } MatInfo;
7074e220ebcSLois Curfman McInnes 
708d9274352SBarry Smith /*E
709d9274352SBarry Smith     MatInfoType - Indicates if you want information about the local part of the matrix,
710d9274352SBarry Smith      the entire parallel matrix or the maximum over all the local parts.
711d9274352SBarry Smith 
712d9274352SBarry Smith     Level: beginner
713d9274352SBarry Smith 
714af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
715d9274352SBarry Smith 
716db781477SPatrick Sanan .seealso: `MatGetInfo()`, `MatInfo`
717d9274352SBarry Smith E*/
7189371c9d4SSatish Balay typedef enum {
7199371c9d4SSatish Balay   MAT_LOCAL      = 1,
7209371c9d4SSatish Balay   MAT_GLOBAL_MAX = 2,
7219371c9d4SSatish Balay   MAT_GLOBAL_SUM = 3
7229371c9d4SSatish Balay } MatInfoType;
723014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *);
724014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec);
725014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]);
726014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]);
727014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]);
728014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]);
729014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec);
730014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *);
7317fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *);
7327fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat);
733014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *);
734014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *);
735014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec);
736014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode);
737a52676ecSHong Zhang 
738014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *);
739014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *);
740014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *);
741014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
742014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
743e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
744e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
745a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
746a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
747cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
7484222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
749447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
75086919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *);
7517b80b807SBarry Smith 
752014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *);
753014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *);
754857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *);
755857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *);
756857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *);
757857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *);
758857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *);
759857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *);
760857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *);
761014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat);
7621b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat);
763014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
764014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec);
765014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
766014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
767014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
768014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec);
7697b80b807SBarry Smith 
770014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *);
771014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *);
772014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *);
773014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **);
774014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *);
775014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **);
776566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *);
7775ef9f2a5SBarry Smith 
7787dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
779d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatrices() (since version 3.8)") static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
780d71ae5a4SJacob Faibussowitsch {
7819371c9d4SSatish Balay   return MatCreateSubMatrices(mat, n, irow, icol, scall, submat);
7829371c9d4SSatish Balay }
7837dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
784d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatricesMPI() (since version 3.8)") static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
785d71ae5a4SJacob Faibussowitsch {
7869371c9d4SSatish Balay   return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat);
7879371c9d4SSatish Balay }
788014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]);
789df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]);
7907dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *);
791d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatrix() (since version 3.8)") static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat)
792d71ae5a4SJacob Faibussowitsch {
7939371c9d4SSatish Balay   return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat);
7949371c9d4SSatish Balay }
795014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *);
796014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *);
797014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *);
798014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *);
7997b80b807SBarry Smith 
800014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *);
801014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *);
802014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat);
803014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *);
8048a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *);
805014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
806ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *);
807f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *);
808014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *);
809014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]);
8108efafbd8SBarry Smith 
811014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt);
812aa1e27eaSFande Kong PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov);
813d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool);
8147b80b807SBarry Smith 
815014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
81622440eb1SKris Buschelman 
8177bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
8182df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
8197bab7c10SHong Zhang 
820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *);
821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *);
82222440eb1SKris Buschelman 
823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *);
825bc011b1eSHong Zhang 
826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure);
827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure);
8281c741599SHong Zhang 
829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar);
830014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar);
8317b80b807SBarry Smith 
832014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping);
833014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
834a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *);
83581fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout);
836014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
837014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
838014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
839014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
840e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
841014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
842014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
843052efed2SBarry Smith 
844014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt);
845014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *);
84690f02eecSBarry Smith 
847014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec);
848014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec);
849014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec);
85030b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *);
85130b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *);
85230b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *);
8532a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *);
854d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateVecs() (since version 3.6)") static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y)
855d71ae5a4SJacob Faibussowitsch {
8569371c9d4SSatish Balay   return MatCreateVecs(mat, x, y);
8579371c9d4SSatish Balay }
85853cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *);
859014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *);
860014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *);
8613a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *);
8629c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *);
863bd481603SBarry Smith 
864bd481603SBarry Smith /*MC
8651620fd73SBarry Smith    MatSetValue - Set a single entry into a matrix.
8661620fd73SBarry Smith 
8671620fd73SBarry Smith    Not collective
8681620fd73SBarry Smith 
869a9834a7dSSatish Balay    Synopsis:
870a9834a7dSSatish Balay      #include <petscmat.h>
871a9834a7dSSatish Balay      PetscErrorCode MatSetValue(Mat m,PetscInt row,PetscInt col,PetscScalar value,InsertMode mode)
872a9834a7dSSatish Balay 
8731620fd73SBarry Smith    Input Parameters:
8741620fd73SBarry Smith +  m - the matrix
8751620fd73SBarry Smith .  row - the row location of the entry
8761620fd73SBarry Smith .  col - the column location of the entry
8771620fd73SBarry Smith .  value - the value to insert
87887497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
8791620fd73SBarry Smith 
8801620fd73SBarry Smith    Notes:
88187497f52SBarry Smith    For efficiency one should use `MatSetValues()` and set several values simultaneously.
8821620fd73SBarry Smith 
8831620fd73SBarry Smith    Level: beginner
8841620fd73SBarry Smith 
885db781477SPatrick Sanan .seealso: `MatGetValue()`, `MatSetValues()`, `MatSetValueLocal()`, `MatSetValuesLocal()`
8861620fd73SBarry Smith M*/
887d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValue(Mat v, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
888d71ae5a4SJacob Faibussowitsch {
8899371c9d4SSatish Balay   return MatSetValues(v, 1, &i, 1, &j, &va, mode);
8909371c9d4SSatish Balay }
8911620fd73SBarry Smith 
892e5e5a7b5SPatrick Sanan /*@C
893e5e5a7b5SPatrick Sanan    MatGetValue - Gets a single value from a matrix
8941620fd73SBarry Smith 
895e5e5a7b5SPatrick Sanan    Not Collective; can only return a value owned by the given process
896e5e5a7b5SPatrick Sanan 
897e5e5a7b5SPatrick Sanan    Input Parameters:
898e5e5a7b5SPatrick Sanan +  mat - the matrix
899e5e5a7b5SPatrick Sanan .  row - the row location of the entry
900e5e5a7b5SPatrick Sanan -  col - the column location of the entry
901e5e5a7b5SPatrick Sanan 
902e5e5a7b5SPatrick Sanan    Output Parameter:
903e5e5a7b5SPatrick Sanan .  va - the value
904e5e5a7b5SPatrick Sanan 
905e5e5a7b5SPatrick Sanan    Notes:
90687497f52SBarry Smith    For efficiency one should use `MatGetValues()` and get several values simultaneously.
907e5e5a7b5SPatrick Sanan 
90887497f52SBarry Smith    See notes for `MatGetValues()`.
909e5e5a7b5SPatrick Sanan 
910e5e5a7b5SPatrick Sanan    Level: advanced
911e5e5a7b5SPatrick Sanan 
912db781477SPatrick Sanan .seealso: `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()`
913e5e5a7b5SPatrick Sanan @*/
914d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va)
915d71ae5a4SJacob Faibussowitsch {
9169371c9d4SSatish Balay   return MatGetValues(mat, 1, &row, 1, &col, va);
9179371c9d4SSatish Balay }
918e5e5a7b5SPatrick Sanan 
919e5e5a7b5SPatrick Sanan /*MC
920e5e5a7b5SPatrick Sanan    MatSetValueLocal - Inserts or adds a single value into a matrix,
921e5e5a7b5SPatrick Sanan    using a local numbering of the nodes.
922e5e5a7b5SPatrick Sanan 
923e5e5a7b5SPatrick Sanan    Not Collective
924e5e5a7b5SPatrick Sanan 
925e5e5a7b5SPatrick Sanan    Input Parameters:
926e5e5a7b5SPatrick Sanan +  m - the matrix
927e5e5a7b5SPatrick Sanan .  row - the row location of the entry
928e5e5a7b5SPatrick Sanan .  col - the column location of the entry
929e5e5a7b5SPatrick Sanan .  value - the value to insert
93087497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
931e5e5a7b5SPatrick Sanan 
932e5e5a7b5SPatrick Sanan    Notes:
93387497f52SBarry Smith    For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously.
934e5e5a7b5SPatrick Sanan 
93587497f52SBarry Smith    See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used.
936e5e5a7b5SPatrick Sanan 
937e5e5a7b5SPatrick Sanan    Level: intermediate
938e5e5a7b5SPatrick Sanan 
939db781477SPatrick Sanan .seealso: `MatSetValue()`, `MatSetValuesLocal()`
940e5e5a7b5SPatrick Sanan M*/
941d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValueLocal(Mat v, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
942d71ae5a4SJacob Faibussowitsch {
9439371c9d4SSatish Balay   return MatSetValuesLocal(v, 1, &i, 1, &j, &va, mode);
9449371c9d4SSatish Balay }
9451620fd73SBarry Smith 
9461620fd73SBarry Smith /*MC
947d0609cedSBarry Smith    MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per
948bd481603SBarry Smith        row in a matrix providing the data that one can use to correctly preallocate the matrix.
949bd481603SBarry Smith 
950bd481603SBarry Smith    Synopsis:
951aaa7dc30SBarry Smith    #include <petscmat.h>
952d0609cedSBarry Smith    PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz)
953bd481603SBarry Smith 
954d083f849SBarry Smith    Collective
955bd481603SBarry Smith 
956bd481603SBarry Smith    Input Parameters:
957bd481603SBarry Smith +  comm - the communicator that will share the eventually allocated matrix
958859fcb39SBarry Smith .  nrows - the number of LOCAL rows in the matrix
959859fcb39SBarry Smith -  ncols - the number of LOCAL columns in the matrix
960bd481603SBarry Smith 
961bd481603SBarry Smith    Output Parameters:
962bd481603SBarry Smith +  dnz - the array that will be passed to the matrix preallocation routines
963a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
964bd481603SBarry Smith 
965bd481603SBarry Smith    Level: intermediate
966bd481603SBarry Smith 
967bd481603SBarry Smith    Notes:
968d0609cedSBarry Smith     This is a macro that handles its own error checking, it does not return an error code.
969d0609cedSBarry Smith 
970a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
971bd481603SBarry Smith 
9721d73ed98SBarry Smith     Do not malloc or free dnz and onz, that is handled internally by these routines
973bd481603SBarry Smith 
974d0609cedSBarry Smith    Developer Notes:
9751620fd73SBarry Smith     This is a MACRO not a function because it has a leading { that is closed by PetscPreallocateFinalize().
9761620fd73SBarry Smith 
977db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
978db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
979bd481603SBarry Smith M*/
9809371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \
9819371c9d4SSatish Balay   do { \
9825f80ce2aSJacob Faibussowitsch     PetscInt __nrows = (nrows), __ncols = (ncols), __rstart, __start, __end = 0; \
9839566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \
9849566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \
9859371c9d4SSatish Balay     __start = __end - __ncols; \
9869371c9d4SSatish Balay     (void)__start; \
9879566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \
9885f80ce2aSJacob Faibussowitsch   __rstart -= __nrows
9897c922b88SBarry Smith 
990d0609cedSBarry Smith #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO("GCC warning \"Use MatPreallocateBegin() (since version 3.18)\"") MatPreallocateBegin(__VA_ARGS__)
991d0609cedSBarry Smith 
992bd481603SBarry Smith /*MC
993bd481603SBarry Smith    MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be
994bd481603SBarry Smith        inserted using a local number of the rows and columns
995bd481603SBarry Smith 
996bd481603SBarry Smith    Synopsis:
997aaa7dc30SBarry Smith    #include <petscmat.h>
998c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
999bd481603SBarry Smith 
1000bd481603SBarry Smith    Not Collective
1001bd481603SBarry Smith 
1002bd481603SBarry Smith    Input Parameters:
1003784ac674SJed Brown +  map - the row mapping from local numbering to global numbering
1004bd481603SBarry Smith .  nrows - the number of rows indicated
10051d73ed98SBarry Smith .  rows - the indices of the rows
1006784ac674SJed Brown .  cmap - the column mapping from local to global numbering
1007bd481603SBarry Smith .  ncols - the number of columns in the matrix
1008bd481603SBarry Smith .  cols - the columns indicated
1009bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1010a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1011bd481603SBarry Smith 
1012bd481603SBarry Smith    Level: intermediate
1013bd481603SBarry Smith 
1014bd481603SBarry Smith    Notes:
1015a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
1016bd481603SBarry Smith 
10171d73ed98SBarry Smith    Do not malloc or free dnz and onz, that is handled internally by these routines
1018bd481603SBarry Smith 
1019db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1020db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()`
1021bd481603SBarry Smith M*/
102294bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
10239371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1024c4f061fbSSatish Balay 
1025bd481603SBarry Smith /*MC
1026c1154cd5SBarry Smith    MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1027c1154cd5SBarry Smith        inserted using a local number of the rows and columns. This version removes any duplicate columns in cols
1028c1154cd5SBarry Smith 
1029c1154cd5SBarry Smith    Synopsis:
1030c1154cd5SBarry Smith    #include <petscmat.h>
1031c1154cd5SBarry Smith    PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1032c1154cd5SBarry Smith 
1033c1154cd5SBarry Smith    Not Collective
1034c1154cd5SBarry Smith 
1035c1154cd5SBarry Smith    Input Parameters:
1036c1154cd5SBarry Smith +  map - the row mapping from local numbering to global numbering
1037c1154cd5SBarry Smith .  nrows - the number of rows indicated
1038c1154cd5SBarry Smith .  rows - the indices of the rows (these values are mapped to the global values)
1039c1154cd5SBarry Smith .  cmap - the column mapping from local to global numbering
1040c1154cd5SBarry Smith .  ncols - the number of columns in the matrix   (this value will be changed if duplicate columns are found)
1041c1154cd5SBarry Smith .  cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed)
1042c1154cd5SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1043a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1044c1154cd5SBarry Smith 
1045c1154cd5SBarry Smith    Level: intermediate
1046c1154cd5SBarry Smith 
1047c1154cd5SBarry Smith    Notes:
1048c1154cd5SBarry Smith     See Users-Manual: ch_performance for more details.
1049c1154cd5SBarry Smith 
1050c1154cd5SBarry Smith    Do not malloc or free dnz and onz, that is handled internally by these routines
1051c1154cd5SBarry Smith 
1052db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1053db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1054c1154cd5SBarry Smith M*/
105594bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
10569371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1057c1154cd5SBarry Smith 
1058c1154cd5SBarry Smith /*MC
1059d6e23781SBarry Smith    MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1060bd481603SBarry Smith        inserted using a local number of the rows and columns
1061bd481603SBarry Smith 
1062bd481603SBarry Smith    Synopsis:
1063aaa7dc30SBarry Smith    #include <petscmat.h>
1064d6e23781SBarry Smith    PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1065d6e23781SBarry Smith 
1066d6e23781SBarry Smith    Not Collective
1067d6e23781SBarry Smith 
1068d6e23781SBarry Smith    Input Parameters:
1069d6e23781SBarry Smith +  map - the row mapping from local numbering to global numbering
1070d6e23781SBarry Smith .  nrows - the number of rows indicated
1071d6e23781SBarry Smith .  rows - the indices of the rows
1072d6e23781SBarry Smith .  cmap - the column mapping from local to global numbering
1073d6e23781SBarry Smith .  ncols - the number of columns in the matrix
1074d6e23781SBarry Smith .  cols - the columns indicated
1075d6e23781SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1076a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1077d6e23781SBarry Smith 
1078d6e23781SBarry Smith    Level: intermediate
1079d6e23781SBarry Smith 
1080d6e23781SBarry Smith    Notes:
1081d6e23781SBarry Smith     See Users-Manual: ch_performance for more details.
1082d6e23781SBarry Smith 
1083d6e23781SBarry Smith    Do not malloc or free dnz and onz, that is handled internally by these routines
1084d6e23781SBarry Smith 
1085db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1086db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`
1087d6e23781SBarry Smith M*/
108894bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
10899371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1090d6e23781SBarry Smith 
1091d6e23781SBarry Smith /*MC
1092d6e23781SBarry Smith    MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1093d6e23781SBarry Smith        inserted using a local number of the rows and columns
1094d6e23781SBarry Smith 
1095d6e23781SBarry Smith    Synopsis:
1096d6e23781SBarry Smith    #include <petscmat.h>
1097d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1098bd481603SBarry Smith 
1099bd481603SBarry Smith    Not Collective
1100bd481603SBarry Smith 
1101bd481603SBarry Smith    Input Parameters:
1102bd481603SBarry Smith +  map - the mapping between local numbering and global numbering
1103bd481603SBarry Smith .  nrows - the number of rows indicated
11041d73ed98SBarry Smith .  rows - the indices of the rows
1105bd481603SBarry Smith .  ncols - the number of columns in the matrix
1106bd481603SBarry Smith .  cols - the columns indicated
1107bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1108a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1109bd481603SBarry Smith 
1110bd481603SBarry Smith    Level: intermediate
1111bd481603SBarry Smith 
1112bd481603SBarry Smith    Notes:
1113a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
1114bd481603SBarry Smith 
1115bd481603SBarry Smith    Do not malloc or free dnz and onz that is handled internally by these routines
1116bd481603SBarry Smith 
1117db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`
1118db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1119bd481603SBarry Smith M*/
112094bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \
11219371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));)
1122e83a5d19SLisandro Dalcin 
1123bd481603SBarry Smith /*MC
1124bd481603SBarry Smith    MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1125bd481603SBarry Smith        inserted using a local number of the rows and columns
1126bd481603SBarry Smith 
1127bd481603SBarry Smith    Synopsis:
1128aaa7dc30SBarry Smith    #include <petscmat.h>
1129c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1130bd481603SBarry Smith 
1131bd481603SBarry Smith    Not Collective
1132bd481603SBarry Smith 
1133bd481603SBarry Smith    Input Parameters:
113464075487SBarry Smith +  row - the row
1135bd481603SBarry Smith .  ncols - the number of columns in the matrix
1136a50f8bf6SHong Zhang -  cols - the columns indicated
1137a50f8bf6SHong Zhang 
1138a50f8bf6SHong Zhang    Output Parameters:
1139a50f8bf6SHong Zhang +  dnz - the array that will be passed to the matrix preallocation routines
1140a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1141bd481603SBarry Smith 
1142bd481603SBarry Smith    Level: intermediate
1143bd481603SBarry Smith 
1144bd481603SBarry Smith    Notes:
1145a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
1146bd481603SBarry Smith 
1147bd481603SBarry Smith    Do not malloc or free dnz and onz that is handled internally by these routines
1148bd481603SBarry Smith 
1149d0609cedSBarry Smith    This is a MACRO not a function because it uses variables declared in MatPreallocateBegin().
11501620fd73SBarry Smith 
1151db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1152db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1153bd481603SBarry Smith M*/
11549371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \
11559371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \
115664075487SBarry Smith     if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \
1157a6042fd4SStefano Zampini     else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
11589371c9d4SSatish Balay   })
11597c922b88SBarry Smith 
1160bd481603SBarry Smith /*MC
1161d6e23781SBarry Smith    MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1162bd481603SBarry Smith        inserted using a local number of the rows and columns
1163bd481603SBarry Smith 
1164bd481603SBarry Smith    Synopsis:
1165aaa7dc30SBarry Smith    #include <petscmat.h>
1166d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1167bd481603SBarry Smith 
1168bd481603SBarry Smith    Not Collective
1169bd481603SBarry Smith 
1170bd481603SBarry Smith    Input Parameters:
1171bd481603SBarry Smith +  nrows - the number of rows indicated
11721d73ed98SBarry Smith .  rows - the indices of the rows
1173bd481603SBarry Smith .  ncols - the number of columns in the matrix
1174bd481603SBarry Smith .  cols - the columns indicated
1175bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1176a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1177bd481603SBarry Smith 
1178bd481603SBarry Smith    Level: intermediate
1179bd481603SBarry Smith 
1180bd481603SBarry Smith    Notes:
1181a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
1182bd481603SBarry Smith 
1183bd481603SBarry Smith    Do not malloc or free dnz and onz that is handled internally by these routines
1184bd481603SBarry Smith 
1185d0609cedSBarry Smith    This is a MACRO not a function because it uses variables declared in MatPreallocateBegin().
11861620fd73SBarry Smith 
1187db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`,
1188db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1189bd481603SBarry Smith M*/
119094bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \
11919371c9d4SSatish Balay   PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \
1192d3d32019SBarry Smith     if (cols[__i] >= __end) onz[row - __rstart]++; \
1193a6042fd4SStefano Zampini     else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
11949371c9d4SSatish Balay   })
1195d3d32019SBarry Smith 
1196bd481603SBarry Smith /*MC
1197a6042fd4SStefano Zampini    MatPreallocateLocation -  An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists
119816371a99SBarry Smith 
119916371a99SBarry Smith    Synopsis:
1200aaa7dc30SBarry Smith    #include <petscmat.h>
120116371a99SBarry Smith    PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz)
120216371a99SBarry Smith 
120316371a99SBarry Smith    Not Collective
120416371a99SBarry Smith 
120516371a99SBarry Smith    Input Parameters:
1206a2b725a8SWilliam Gropp +  A - matrix
120716371a99SBarry Smith .  row - row where values exist (must be local to this process)
120816371a99SBarry Smith .  ncols - number of columns
120916371a99SBarry Smith .  cols - columns with nonzeros
121016371a99SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1211a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
121216371a99SBarry Smith 
121316371a99SBarry Smith    Level: intermediate
121416371a99SBarry Smith 
121516371a99SBarry Smith    Notes:
1216a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
121716371a99SBarry Smith 
121816371a99SBarry Smith    Do not malloc or free dnz and onz that is handled internally by these routines
121916371a99SBarry Smith 
122016371a99SBarry Smith    This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines.
122116371a99SBarry Smith 
1222db781477SPatrick Sanan .seealso: `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1223db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
122416371a99SBarry Smith M*/
1225d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz))
122616371a99SBarry Smith 
122716371a99SBarry Smith /*MC
1228d0609cedSBarry Smith    MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per
1229bd481603SBarry Smith        row in a matrix providing the data that one can use to correctly preallocate the matrix.
1230bd481603SBarry Smith 
1231bd481603SBarry Smith    Synopsis:
1232aaa7dc30SBarry Smith    #include <petscmat.h>
1233d0609cedSBarry Smith    PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz)
1234bd481603SBarry Smith 
1235d083f849SBarry Smith    Collective
1236bd481603SBarry Smith 
1237bd481603SBarry Smith    Input Parameters:
123816371a99SBarry Smith +  dnz - the array that was be passed to the matrix preallocation routines
1239a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1240bd481603SBarry Smith 
1241bd481603SBarry Smith    Level: intermediate
1242bd481603SBarry Smith 
1243bd481603SBarry Smith    Notes:
1244d0609cedSBarry Smith     This is a macro that handles its own error checking, it does not return an error code.
1245d0609cedSBarry Smith 
1246a7f22e61SSatish Balay     See Users-Manual: ch_performance for more details.
1247bd481603SBarry Smith 
1248d0609cedSBarry Smith     Do not malloc or free dnz and onz, that is handled internally by these routines
1249bd481603SBarry Smith 
1250d0609cedSBarry Smith    Developer Notes:
1251d0609cedSBarry Smith     This is a MACRO not a function because it closes the { started in MatPreallocateBegin().
12521620fd73SBarry Smith 
1253db781477SPatrick Sanan .seealso: `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1254db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1255bd481603SBarry Smith M*/
12569371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \
12579371c9d4SSatish Balay   PetscCall(PetscFree2(dnz, onz)); \
12589371c9d4SSatish Balay   } \
12599371c9d4SSatish Balay   while (0)
1260d0609cedSBarry Smith 
1261d0609cedSBarry Smith #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO("GCC warning \"Use MatPreallocateEnd() (since version 3.18)\"") MatPreallocateEnd(__VA_ARGS__)
12627c922b88SBarry Smith 
12637b80b807SBarry Smith /* Routines unique to particular data structures */
1264014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *);
1265698d4c6aSKris Buschelman 
1266014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *);
1267014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *);
1268698d4c6aSKris Buschelman 
1269014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]);
1270014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]);
1271014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1272014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1273014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1274014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool);
12757b80b807SBarry Smith 
1276a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4
1277a96a251dSBarry Smith 
1278014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1279014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1280014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]);
128119b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt);
1282273d9f13SBarry Smith 
1283014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1284014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1285014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1286014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1287014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1288014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1289014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1290014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]);
1291b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *);
1292252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *);
1293014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]);
1294014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]);
12959230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
12969230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
1297014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *);
1298273d9f13SBarry Smith 
129949a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *);
1300ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt);
1301d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatDenseSetLDA() (since version 3.14)") static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda)
1302d71ae5a4SJacob Faibussowitsch {
13039371c9d4SSatish Balay   return MatDenseSetLDA(A, lda);
13049371c9d4SSatish Balay }
1305014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *);
13061b807ce4Svictorle 
1307621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1308621e819fSSatish Balay 
1309014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat);
1310014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat);
13112e8a6d31SBarry Smith 
1312014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *);
13137cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *);
13147b80b807SBarry Smith /*
13157b80b807SBarry Smith   These routines are not usually accessed directly, rather solving is
131694b7f48cSBarry Smith   done through the KSP and PC interfaces.
13177b80b807SBarry Smith */
13187b80b807SBarry Smith 
131976bdecfbSBarry Smith /*J
13208f6c3df8SBarry Smith     MatOrderingType - String with the name of a PETSc matrix ordering
1321d9274352SBarry Smith 
1322d9274352SBarry Smith    Level: beginner
1323d9274352SBarry Smith 
13242c7c0729SBarry Smith    Notes:
132587497f52SBarry Smith       If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and utilizes one built into the factorization package
13262c7c0729SBarry Smith 
1327db781477SPatrick Sanan .seealso: `MatGetOrdering()`
132876bdecfbSBarry Smith J*/
132919fd82e9SBarry Smith typedef const char *MatOrderingType;
13302692d6eeSBarry Smith #define MATORDERINGNATURAL       "natural"
13312692d6eeSBarry Smith #define MATORDERINGND            "nd"
13322692d6eeSBarry Smith #define MATORDERING1WD           "1wd"
13332692d6eeSBarry Smith #define MATORDERINGRCM           "rcm"
13342692d6eeSBarry Smith #define MATORDERINGQMD           "qmd"
13352692d6eeSBarry Smith #define MATORDERINGROWLENGTH     "rowlength"
1336510184a7SJed Brown #define MATORDERINGWBM           "wbm"
1337fc1bef75SJed Brown #define MATORDERINGSPECTRAL      "spectral"
1338312e372aSBarry Smith #define MATORDERINGAMD           "amd"           /* only works if UMFPACK is installed with PETSc */
1339048412efSPablo Brubeck #define MATORDERINGMETISND       "metisnd"       /* only works if METIS is installed with PETSc */
13409bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */
13412c7c0729SBarry Smith #define MATORDERINGEXTERNAL      "external"      /* uses an ordering type internal to the factorization package */
1342b12f92e5SBarry Smith 
134319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrdering(Mat, MatOrderingType, IS *, IS *);
1344140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrderingList(PetscFunctionList *);
1345bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode    MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *));
1346140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList;
1347d4fbbf0eSBarry Smith 
1348013e2dc7SBarry Smith #include "petscmatcoarsen.h"
1349013e2dc7SBarry Smith 
1350014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS);
1351fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *);
1352a2ce50c7SBarry Smith 
13534ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *);
13544ac6704cSBarry Smith 
1355d91e6319SBarry Smith /*S
1356ec5066bdSBarry Smith     MatFactorShiftType - Numeric Shift for factorizations
1357d90ac83dSHong Zhang 
1358d90ac83dSHong Zhang    Level: beginner
1359d90ac83dSHong Zhang 
1360db781477SPatrick Sanan .seealso: `MatGetFactor()`
1361d90ac83dSHong Zhang S*/
13629371c9d4SSatish Balay typedef enum {
13639371c9d4SSatish Balay   MAT_SHIFT_NONE,
13649371c9d4SSatish Balay   MAT_SHIFT_NONZERO,
13659371c9d4SSatish Balay   MAT_SHIFT_POSITIVE_DEFINITE,
13669371c9d4SSatish Balay   MAT_SHIFT_INBLOCKS
13679371c9d4SSatish Balay } MatFactorShiftType;
13686a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[];
13695e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[];
1370d90ac83dSHong Zhang 
1371d90ac83dSHong Zhang /*S
1372ec5066bdSBarry Smith     MatFactorError - indicates what type of error was generated in a matrix factorization
13739aa7eafdSHong Zhang 
13749aa7eafdSHong Zhang     Level: beginner
13759aa7eafdSHong Zhang 
137687497f52SBarry Smith     Developer Note:
137795452b02SPatrick Sanan     Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
137800e125f8SBarry Smith 
1379db781477SPatrick Sanan .seealso: `MatGetFactor()`
13809aa7eafdSHong Zhang S*/
13819371c9d4SSatish Balay typedef enum {
13829371c9d4SSatish Balay   MAT_FACTOR_NOERROR,
13839371c9d4SSatish Balay   MAT_FACTOR_STRUCT_ZEROPIVOT,
13849371c9d4SSatish Balay   MAT_FACTOR_NUMERIC_ZEROPIVOT,
13859371c9d4SSatish Balay   MAT_FACTOR_OUTMEMORY,
13869371c9d4SSatish Balay   MAT_FACTOR_OTHER
13879371c9d4SSatish Balay } MatFactorError;
13889aa7eafdSHong Zhang 
138900e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *);
1390b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat);
13917b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *);
139200e125f8SBarry Smith 
13939aa7eafdSHong Zhang /*S
1394422a814eSBarry Smith    MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization
1395b00f7748SHong Zhang 
139687497f52SBarry Smith    In Fortran these are simply double precision arrays of size `MAT_FACTORINFO_SIZE`, that is use
139761cad860SBarry Smith $     MatFactorInfo  info(MAT_FACTORINFO_SIZE)
1398b00f7748SHong Zhang 
139995452b02SPatrick Sanan    Notes:
140087497f52SBarry Smith     These are not usually directly used by users, instead use `PC` type of `PCLU`, `PCILU`, `PCCHOLESKY` or `PCICC`.
1401b00f7748SHong Zhang 
140287497f52SBarry Smith       You can use `MatFactorInfoInitialize()` to set default values.
140361cad860SBarry Smith 
1404b00f7748SHong Zhang    Level: developer
1405b00f7748SHong Zhang 
1406db781477SPatrick Sanan .seealso: `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, `MatICCFactorSymbolic()`, `MatICCFactor()`,
1407db781477SPatrick Sanan           `MatFactorInfoInitialize()`
1408b00f7748SHong Zhang 
1409b00f7748SHong Zhang S*/
1410b00f7748SHong Zhang typedef struct {
141115e8a5b3SHong Zhang   PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */
141285317021SBarry Smith   PetscReal usedt;
141315e8a5b3SHong Zhang   PetscReal dt;            /* drop tolerance */
1414b00f7748SHong Zhang   PetscReal dtcol;         /* tolerance for pivoting */
141515e8a5b3SHong Zhang   PetscReal dtcount;       /* maximum nonzeros to be allowed per row */
141667e28bfeSBarry Smith   PetscReal fill;          /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */
1417348344bbSBarry Smith   PetscReal levels;        /* ICC/ILU(levels) */
1418bcd9e38bSBarry Smith   PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0
1419bcd9e38bSBarry Smith                                    factorization may be faster if do not pivot */
142015e8a5b3SHong Zhang   PetscReal zeropivot;     /* pivot is called zero if less than this */
1421f4db908eSBarry Smith   PetscReal shifttype;     /* type of shift added to matrix factor to prevent zero pivots */
1422f4db908eSBarry Smith   PetscReal shiftamount;   /* how large the shift is */
142315e8a5b3SHong Zhang } MatFactorInfo;
1424ffa6d0a5SLois Curfman McInnes 
1425014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *);
14269a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *);
14279a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
14289a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *);
14299a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *);
14309a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *);
14319a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
14329a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
14339a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
14349a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *);
14359a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *);
14363f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *);
14373f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
14383f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *);
1439014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *);
1440014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec);
1441014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec);
1442014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec);
1443014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec);
1444014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec);
1445014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec);
1446014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs);
14477c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat);
14487c2f51b8SStefano Zampini 
14499371c9d4SSatish Balay typedef enum {
14509371c9d4SSatish Balay   MAT_FACTOR_SCHUR_UNFACTORED,
14519371c9d4SSatish Balay   MAT_FACTOR_SCHUR_FACTORED,
14529371c9d4SSatish Balay   MAT_FACTOR_SCHUR_INVERTED
14539371c9d4SSatish Balay } MatFactorSchurStatus;
14548e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS);
14557c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
14567c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus);
14575a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat);
14587c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
14595a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec);
14605a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec);
14616dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat);
1462bb5a7306SBarry Smith 
14638a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat);
1464d91e6319SBarry Smith /*E
1465d91e6319SBarry Smith     MatSORType - What type of (S)SOR to perform
1466bb1eb677SSatish Balay 
1467d91e6319SBarry Smith     Level: beginner
1468d91e6319SBarry Smith 
1469d9274352SBarry Smith    May be bitwise ORd together
1470d9274352SBarry Smith 
147187497f52SBarry Smith    Developer Notes:
1472af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
1473d91e6319SBarry Smith 
147487497f52SBarry Smith   `MatSORType` may be bitwise ORd together, so do not change the numerical values
14754e7234bfSBarry Smith 
1476db781477SPatrick Sanan .seealso: `MatSOR()`
1477d91e6319SBarry Smith E*/
14789371c9d4SSatish Balay typedef enum {
14799371c9d4SSatish Balay   SOR_FORWARD_SWEEP         = 1,
14809371c9d4SSatish Balay   SOR_BACKWARD_SWEEP        = 2,
14819371c9d4SSatish Balay   SOR_SYMMETRIC_SWEEP       = 3,
14829371c9d4SSatish Balay   SOR_LOCAL_FORWARD_SWEEP   = 4,
14839371c9d4SSatish Balay   SOR_LOCAL_BACKWARD_SWEEP  = 8,
14849371c9d4SSatish Balay   SOR_LOCAL_SYMMETRIC_SWEEP = 12,
14859371c9d4SSatish Balay   SOR_ZERO_INITIAL_GUESS    = 16,
14869371c9d4SSatish Balay   SOR_EISENSTAT             = 32,
14879371c9d4SSatish Balay   SOR_APPLY_UPPER           = 64,
14889371c9d4SSatish Balay   SOR_APPLY_LOWER           = 128
14899371c9d4SSatish Balay } MatSORType;
1490014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
14918ed539a5SBarry Smith 
14927086a01eSPeter Brune /*S
14937086a01eSPeter Brune      MatColoring - Object for managing the coloring of matrices.
14947086a01eSPeter Brune 
14957086a01eSPeter Brune    Level: beginner
14967086a01eSPeter Brune 
1497ec5066bdSBarry Smith     Notes:
149887497f52SBarry Smith        Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
149987497f52SBarry Smith        matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors).
1500ec5066bdSBarry Smith 
150187497f52SBarry Smith        Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This
1502ec5066bdSBarry Smith        same object can also be used to efficiently convert data created by Automatic Differentation tools to PETSc sparse matrices.
1503ec5066bdSBarry Smith 
1504db781477SPatrick Sanan .seealso: `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`, `MatOrdering`, `MatPartitioning`, `MatColoringType`
15057086a01eSPeter Brune S*/
1506d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring;
1507d4db15c4SBarry Smith 
1508d4db15c4SBarry Smith /*J
1509d4db15c4SBarry Smith     MatColoringType - String with the name of a PETSc matrix coloring
1510d9274352SBarry Smith 
1511d9274352SBarry Smith    Level: beginner
1512d9274352SBarry Smith 
1513db781477SPatrick Sanan .seealso: `MatColoringSetType()`, `MatColoring`
151476bdecfbSBarry Smith J*/
151519fd82e9SBarry Smith typedef const char *MatColoringType;
15165567d71aSPeter Brune #define MATCOLORINGJP      "jp"
1517b9acb617SPeter Brune #define MATCOLORINGPOWER   "power"
15182692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural"
15192692d6eeSBarry Smith #define MATCOLORINGSL      "sl"
15202692d6eeSBarry Smith #define MATCOLORINGLF      "lf"
15212692d6eeSBarry Smith #define MATCOLORINGID      "id"
15228121bdceSPeter Brune #define MATCOLORINGGREEDY  "greedy"
1523b12f92e5SBarry Smith 
15248ac6da0aSPeter Brune /*E
15258ac6da0aSPeter Brune    MatColoringWeightType - Type of weight scheme
15268ac6da0aSPeter Brune 
15278ac6da0aSPeter Brune     Not Collective
15288ac6da0aSPeter Brune 
152987497f52SBarry Smith +   `MAT_COLORING_RANDOM`  - Random weights
153087497f52SBarry Smith .   `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering.
153187497f52SBarry Smith -   `MAT_COLORING_LF`      - Last-first weighting.
15328ac6da0aSPeter Brune 
15338ac6da0aSPeter Brune     Level: intermediate
15348ac6da0aSPeter Brune 
153587497f52SBarry Smith    Developer Note:
1536af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
1537ec5066bdSBarry Smith 
1538db781477SPatrick Sanan .seealso: `MatColoring`, `MatColoringCreate()`
15398ac6da0aSPeter Brune E*/
15409371c9d4SSatish Balay typedef enum {
15419371c9d4SSatish Balay   MAT_COLORING_WEIGHT_RANDOM,
15429371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LEXICAL,
15439371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LF,
15449371c9d4SSatish Balay   MAT_COLORING_WEIGHT_SL
15459371c9d4SSatish Balay } MatColoringWeightType;
15468ac6da0aSPeter Brune 
1547335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *);
1548d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *);
1549335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *);
1550335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer);
1551335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType);
1552335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring);
1553335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt);
1554335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *);
1555335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt);
1556335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *);
1557335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *);
1558335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring));
1559014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *);
15608ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType);
1561c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *);
15628ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm);
1563bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring);
1564d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatColoringTest() (since version 3.10)") static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring)
1565d71ae5a4SJacob Faibussowitsch {
15669371c9d4SSatish Balay   return MatColoringTest(matcoloring, iscoloring);
15679371c9d4SSatish Balay }
1568bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring);
1569639f9d9dSBarry Smith 
1570d9274352SBarry Smith /*S
157187497f52SBarry Smith      MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring
1572639f9d9dSBarry Smith 
1573d9274352SBarry Smith    Level: beginner
1574d9274352SBarry Smith 
1575ec5066bdSBarry Smith    Notes:
157687497f52SBarry Smith       This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()`
1577ec5066bdSBarry Smith 
157887497f52SBarry Smith .seealso: `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()`
1579d9274352SBarry Smith S*/
1580e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring;
1581639f9d9dSBarry Smith 
1582014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *);
1583014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *);
1584014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer);
1585014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *);
1586014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **);
1587014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal);
1588014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring);
1589d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *);
1590014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec);
1591edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]);
1592f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring);
1593f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt);
1594bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *);
1595b1683b59SHong Zhang 
1596b1683b59SHong Zhang /*S
1597b9af6bddSHong Zhang      MatTransposeColoring - Object for computing a sparse matrix product C=A*B^T via coloring
1598b1683b59SHong Zhang 
1599b1683b59SHong Zhang    Level: beginner
1600b1683b59SHong Zhang 
1601db781477SPatrick Sanan .seealso: `MatTransposeColoringCreate()`
1602b1683b59SHong Zhang S*/
1603b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring;
1604b1683b59SHong Zhang 
1605014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *);
1606014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat);
1607014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat);
1608014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *);
1609b1683b59SHong Zhang 
1610d9274352SBarry Smith /*S
1611d9274352SBarry Smith      MatPartitioning - Object for managing the partitioning of a matrix or graph
1612d9274352SBarry Smith 
1613d9274352SBarry Smith    Level: beginner
1614d9274352SBarry Smith 
161587497f52SBarry Smith    Note:
161687497f52SBarry Smith      There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations
161787497f52SBarry Smith      via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`)
1618ec5066bdSBarry Smith 
1619ec5066bdSBarry Smith    Developers Note:
1620*d5b43468SJose E. Roman      It is an extra maintenance and documentation cost to have two objects with the same functionality.
1621ec5066bdSBarry Smith 
1622db781477SPatrick Sanan .seealso: `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`
1623d9274352SBarry Smith S*/
162491e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning;
1625d9274352SBarry Smith 
162676bdecfbSBarry Smith /*J
16278f6c3df8SBarry Smith     MatPartitioningType - String with the name of a PETSc matrix partitioning
1628d9274352SBarry Smith 
1629d9274352SBarry Smith    Level: beginner
16300d04baf8SBarry Smith dm
163187497f52SBarry Smith .seealso: `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`
163276bdecfbSBarry Smith J*/
163319fd82e9SBarry Smith typedef const char *MatPartitioningType;
16342692d6eeSBarry Smith #define MATPARTITIONINGCURRENT  "current"
1635aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE  "average"
16362692d6eeSBarry Smith #define MATPARTITIONINGSQUARE   "square"
16372692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis"
16382692d6eeSBarry Smith #define MATPARTITIONINGCHACO    "chaco"
16392692d6eeSBarry Smith #define MATPARTITIONINGPARTY    "party"
164050d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch"
164188d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch"
164271306c60Sjroman 
1643014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *);
164419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType);
1645014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt);
1646014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat);
1647252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt);
1648014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]);
1649014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]);
1650ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool);
1651ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *);
1652014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *);
1653fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *);
1654668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS);
1655f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *);
1656014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *);
1657bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning));
1658014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer);
1659fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]);
1660014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning);
166119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *);
1662ca161407SBarry Smith 
166327538973SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part);
1664014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning);
1665014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *);
16660752156aSBarry Smith 
16679371c9d4SSatish Balay typedef enum {
16689371c9d4SSatish Balay   MP_CHACO_MULTILEVEL = 1,
16699371c9d4SSatish Balay   MP_CHACO_SPECTRAL   = 2,
16709371c9d4SSatish Balay   MP_CHACO_LINEAR     = 4,
16719371c9d4SSatish Balay   MP_CHACO_RANDOM     = 5,
16729371c9d4SSatish Balay   MP_CHACO_SCATTERED  = 6
16739371c9d4SSatish Balay } MPChacoGlobalType;
16746a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[];
16759371c9d4SSatish Balay typedef enum {
16769371c9d4SSatish Balay   MP_CHACO_KERNIGHAN = 1,
16779371c9d4SSatish Balay   MP_CHACO_NONE      = 2
16789371c9d4SSatish Balay } MPChacoLocalType;
16796a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[];
16809371c9d4SSatish Balay typedef enum {
16819371c9d4SSatish Balay   MP_CHACO_LANCZOS = 0,
16829371c9d4SSatish Balay   MP_CHACO_RQI     = 1
16839371c9d4SSatish Balay } MPChacoEigenType;
16846a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[];
1685b6956c12SJose Roman 
1686014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType);
1687014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *);
1688014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType);
1689014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *);
1690014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal);
1691014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType);
1692014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *);
1693014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal);
1694014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *);
1695014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt);
1696014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *);
169771306c60Sjroman 
169871306c60Sjroman #define MP_PARTY_OPT "opt"
169971306c60Sjroman #define MP_PARTY_LIN "lin"
170071306c60Sjroman #define MP_PARTY_SCA "sca"
170171306c60Sjroman #define MP_PARTY_RAN "ran"
170271306c60Sjroman #define MP_PARTY_GBF "gbf"
170371306c60Sjroman #define MP_PARTY_GCF "gcf"
170471306c60Sjroman #define MP_PARTY_BUB "bub"
170571306c60Sjroman #define MP_PARTY_DEF "def"
1706014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *);
170771306c60Sjroman #define MP_PARTY_HELPFUL_SETS  "hs"
170871306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl"
170971306c60Sjroman #define MP_PARTY_NONE          "no"
1710014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *);
1711014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal);
1712014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool);
1713014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool);
171471306c60Sjroman 
17159371c9d4SSatish Balay typedef enum {
17169371c9d4SSatish Balay   MP_PTSCOTCH_DEFAULT,
17179371c9d4SSatish Balay   MP_PTSCOTCH_QUALITY,
17189371c9d4SSatish Balay   MP_PTSCOTCH_SPEED,
17199371c9d4SSatish Balay   MP_PTSCOTCH_BALANCE,
17209371c9d4SSatish Balay   MP_PTSCOTCH_SAFETY,
17219371c9d4SSatish Balay   MP_PTSCOTCH_SCALABILITY
17229371c9d4SSatish Balay } MPPTScotchStrategyType;
17236a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[];
1724e0f1cffaSJose Roman 
1725014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal);
1726014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *);
1727014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType);
1728014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *);
172971306c60Sjroman 
1730b43b03e9SMark F. Adams /*
17316294fa2bSFande Kong  * hierarchical partitioning
17326294fa2bSFande Kong  */
17334e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *);
17344e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *);
17354e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt);
17364e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt);
17376294fa2bSFande Kong 
1738014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *);
1739591294e4SBarry Smith 
17400752156aSBarry Smith /*
1741c786d857SStefano Zampini     If you add entries here you must also add them to src/mat/f90-mod/petscmat.h
1742c786d857SStefano Zampini     If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx
1743d4fbbf0eSBarry Smith */
17449371c9d4SSatish Balay typedef enum {
17459371c9d4SSatish Balay   MATOP_SET_VALUES               = 0,
17461c1c02c0SLois Curfman McInnes   MATOP_GET_ROW                  = 1,
17471c1c02c0SLois Curfman McInnes   MATOP_RESTORE_ROW              = 2,
17481c1c02c0SLois Curfman McInnes   MATOP_MULT                     = 3,
17491c1c02c0SLois Curfman McInnes   MATOP_MULT_ADD                 = 4,
17507c922b88SBarry Smith   MATOP_MULT_TRANSPOSE           = 5,
17517c922b88SBarry Smith   MATOP_MULT_TRANSPOSE_ADD       = 6,
17521c1c02c0SLois Curfman McInnes   MATOP_SOLVE                    = 7,
17531c1c02c0SLois Curfman McInnes   MATOP_SOLVE_ADD                = 8,
17547c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE          = 9,
17557c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE_ADD      = 10,
17561c1c02c0SLois Curfman McInnes   MATOP_LUFACTOR                 = 11,
17571c1c02c0SLois Curfman McInnes   MATOP_CHOLESKYFACTOR           = 12,
1758a714c06dSBarry Smith   MATOP_SOR                      = 13,
17591c1c02c0SLois Curfman McInnes   MATOP_TRANSPOSE                = 14,
17601c1c02c0SLois Curfman McInnes   MATOP_GETINFO                  = 15,
17611c1c02c0SLois Curfman McInnes   MATOP_EQUAL                    = 16,
17621c1c02c0SLois Curfman McInnes   MATOP_GET_DIAGONAL             = 17,
17631c1c02c0SLois Curfman McInnes   MATOP_DIAGONAL_SCALE           = 18,
17641c1c02c0SLois Curfman McInnes   MATOP_NORM                     = 19,
17651c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_BEGIN           = 20,
17661c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_END             = 21,
1767d519adbfSMatthew Knepley   MATOP_SET_OPTION               = 22,
1768d519adbfSMatthew Knepley   MATOP_ZERO_ENTRIES             = 23,
1769d519adbfSMatthew Knepley   MATOP_ZERO_ROWS                = 24,
1770d519adbfSMatthew Knepley   MATOP_LUFACTOR_SYMBOLIC        = 25,
1771d519adbfSMatthew Knepley   MATOP_LUFACTOR_NUMERIC         = 26,
1772d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27,
1773d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_NUMERIC  = 28,
1774e5f2d425SStefano Zampini   MATOP_SETUP                    = 29,
1775d519adbfSMatthew Knepley   MATOP_ILUFACTOR_SYMBOLIC       = 30,
1776d519adbfSMatthew Knepley   MATOP_ICCFACTOR_SYMBOLIC       = 31,
1777a5b7ff6bSBarry Smith   MATOP_GET_DIAGONAL_BLOCK       = 32,
1778e5f2d425SStefano Zampini   MATOP_SET_INF                  = 33,
1779d519adbfSMatthew Knepley   MATOP_DUPLICATE                = 34,
1780d519adbfSMatthew Knepley   MATOP_FORWARD_SOLVE            = 35,
1781d519adbfSMatthew Knepley   MATOP_BACKWARD_SOLVE           = 36,
1782d519adbfSMatthew Knepley   MATOP_ILUFACTOR                = 37,
1783d519adbfSMatthew Knepley   MATOP_ICCFACTOR                = 38,
1784d519adbfSMatthew Knepley   MATOP_AXPY                     = 39,
17857dae84e0SHong Zhang   MATOP_CREATE_SUBMATRICES       = 40,
1786d519adbfSMatthew Knepley   MATOP_INCREASE_OVERLAP         = 41,
1787d519adbfSMatthew Knepley   MATOP_GET_VALUES               = 42,
1788d519adbfSMatthew Knepley   MATOP_COPY                     = 43,
1789d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX              = 44,
1790d519adbfSMatthew Knepley   MATOP_SCALE                    = 45,
1791d519adbfSMatthew Knepley   MATOP_SHIFT                    = 46,
179235153367SBarry Smith   MATOP_DIAGONAL_SET             = 47,
17939d39f69dSJed Brown   MATOP_ZERO_ROWS_COLUMNS        = 48,
17949d39f69dSJed Brown   MATOP_SET_RANDOM               = 49,
1795d519adbfSMatthew Knepley   MATOP_GET_ROW_IJ               = 50,
1796d519adbfSMatthew Knepley   MATOP_RESTORE_ROW_IJ           = 51,
1797d519adbfSMatthew Knepley   MATOP_GET_COLUMN_IJ            = 52,
1798d519adbfSMatthew Knepley   MATOP_RESTORE_COLUMN_IJ        = 53,
1799d519adbfSMatthew Knepley   MATOP_FDCOLORING_CREATE        = 54,
1800d519adbfSMatthew Knepley   MATOP_COLORING_PATCH           = 55,
1801d519adbfSMatthew Knepley   MATOP_SET_UNFACTORED           = 56,
1802d519adbfSMatthew Knepley   MATOP_PERMUTE                  = 57,
1803d519adbfSMatthew Knepley   MATOP_SET_VALUES_BLOCKED       = 58,
18047dae84e0SHong Zhang   MATOP_CREATE_SUBMATRIX         = 59,
1805d519adbfSMatthew Knepley   MATOP_DESTROY                  = 60,
1806d519adbfSMatthew Knepley   MATOP_VIEW                     = 61,
1807d519adbfSMatthew Knepley   MATOP_CONVERT_FROM             = 62,
1808e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_63=63 */
18097bab7c10SHong Zhang   MATOP_MATMAT_MULT_SYMBOLIC    = 64,
18107bab7c10SHong Zhang   MATOP_MATMAT_MULT_NUMERIC     = 65,
1811d519adbfSMatthew Knepley   MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66,
1812d519adbfSMatthew Knepley   MATOP_SET_VALUES_LOCAL        = 67,
1813d519adbfSMatthew Knepley   MATOP_ZERO_ROWS_LOCAL         = 68,
1814d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX_ABS         = 69,
1815d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN_ABS         = 70,
1816d519adbfSMatthew Knepley   MATOP_CONVERT                 = 71,
1817e5f2d425SStefano Zampini   MATOP_HAS_OPERATION           = 72,
18189d39f69dSJed Brown   /* MATOP_PLACEHOLDER_73=73, */
1819d519adbfSMatthew Knepley   MATOP_SET_VALUES_ADIFOR = 74,
1820d519adbfSMatthew Knepley   MATOP_FD_COLORING_APPLY = 75,
1821d519adbfSMatthew Knepley   MATOP_SET_FROM_OPTIONS  = 76,
1822e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_77=77, */
1823e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_78=78, */
18249d39f69dSJed Brown   MATOP_FIND_ZERO_DIAGONALS       = 79,
1825d519adbfSMatthew Knepley   MATOP_MULT_MULTIPLE             = 80,
1826d519adbfSMatthew Knepley   MATOP_SOLVE_MULTIPLE            = 81,
1827d519adbfSMatthew Knepley   MATOP_GET_INERTIA               = 82,
1828d519adbfSMatthew Knepley   MATOP_LOAD                      = 83,
1829d519adbfSMatthew Knepley   MATOP_IS_SYMMETRIC              = 84,
1830d519adbfSMatthew Knepley   MATOP_IS_HERMITIAN              = 85,
1831d519adbfSMatthew Knepley   MATOP_IS_STRUCTURALLY_SYMMETRIC = 86,
1832820469bcSHong Zhang   MATOP_SET_VALUES_BLOCKEDLOCAL   = 87,
1833b41ce5d5SBarry Smith   MATOP_CREATE_VECS               = 88,
1834e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_89=89, */
1835d519adbfSMatthew Knepley   MATOP_MAT_MULT_SYMBOLIC = 90,
1836d519adbfSMatthew Knepley   MATOP_MAT_MULT_NUMERIC  = 91,
1837e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_92=92, */
1838d519adbfSMatthew Knepley   MATOP_PTAP_SYMBOLIC = 93,
1839d519adbfSMatthew Knepley   MATOP_PTAP_NUMERIC  = 94,
1840e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_95=95, */
1841bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96,
1842bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_NUMER = 97,
1843e5f2d425SStefano Zampini   MATOP_BIND_TO_CPU              = 98,
18447a3c3d58SStefano Zampini   MATOP_PRODUCTSETFROMOPTIONS    = 99,
18457a3c3d58SStefano Zampini   MATOP_PRODUCTSYMBOLIC          = 100,
18467a3c3d58SStefano Zampini   MATOP_PRODUCTNUMERIC           = 101,
1847d519adbfSMatthew Knepley   MATOP_CONJUGATE                = 102,
1848e5f2d425SStefano Zampini   MATOP_VIEW_NATIVE              = 103,
1849d519adbfSMatthew Knepley   MATOP_SET_VALUES_ROW           = 104,
1850d519adbfSMatthew Knepley   MATOP_REAL_PART                = 105,
1851bda6c4cbSBarry Smith   MATOP_IMAGINARY_PART           = 106,
1852bda6c4cbSBarry Smith   MATOP_GET_ROW_UPPER_TRIANGULAR = 107,
1853bda6c4cbSBarry Smith   MATOP_RESTORE_ROW_UPPER_TRIANG = 108,
1854bda6c4cbSBarry Smith   MATOP_MAT_SOLVE                = 109,
185529eadf9eSStefano Zampini   MATOP_MAT_SOLVE_TRANSPOSE      = 110,
1856d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN              = 111,
18570e8d04f7SBarry Smith   MATOP_GET_COLUMN_VECTOR        = 112,
1858d519adbfSMatthew Knepley   MATOP_MISSING_DIAGONAL         = 113,
18590e8d04f7SBarry Smith   MATOP_GET_SEQ_NONZERO_STRUCTUR = 114,
186089c6957cSBarry Smith   MATOP_CREATE                   = 115,
186189c6957cSBarry Smith   MATOP_GET_GHOSTS               = 116,
18620e8d04f7SBarry Smith   MATOP_GET_LOCAL_SUB_MATRIX     = 117,
18630e8d04f7SBarry Smith   MATOP_RESTORE_LOCALSUB_MATRIX  = 118,
1864eeffb40dSHong Zhang   MATOP_MULT_DIAGONAL_BLOCK      = 119,
18650e8d04f7SBarry Smith   MATOP_HERMITIAN_TRANSPOSE      = 120,
18660e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANSPOSE = 121,
18670e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANS_ADD = 122,
18680e8d04f7SBarry Smith   MATOP_GET_MULTI_PROC_BLOCK     = 123,
18699d39f69dSJed Brown   MATOP_FIND_NONZERO_ROWS        = 124,
18700e8d04f7SBarry Smith   MATOP_GET_COLUMN_NORMS         = 125,
18719d39f69dSJed Brown   MATOP_INVERT_BLOCK_DIAGONAL    = 126,
1872e5f2d425SStefano Zampini   MATOP_INVERT_VBLOCK_DIAGONAL   = 127,
1873b41ce5d5SBarry Smith   MATOP_CREATE_SUB_MATRICES_MPI  = 128,
18742b8ad9a3SHong Zhang   MATOP_SET_VALUES_BATCH         = 129,
1875e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_130=130, */
18760e8d04f7SBarry Smith   MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131,
1877e9b602ebSSatish Balay   MATOP_TRANSPOSE_MAT_MULT_NUMER = 132,
18780e8d04f7SBarry Smith   MATOP_TRANSPOSE_COLORING_CREAT = 133,
18790e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_SPT = 134,
18800e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_DEN = 135,
1881e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_136=136, */
18820e8d04f7SBarry Smith   MATOP_RART_SYMBOLIC         = 137,
18830e8d04f7SBarry Smith   MATOP_RART_NUMERIC          = 138,
1884e09a3074SHong Zhang   MATOP_SET_BLOCK_SIZES       = 139,
1885f9426fe0SMark Adams   MATOP_AYPX                  = 140,
18861919a2e2SJed Brown   MATOP_RESIDUAL              = 141,
18879c8f2541SHong Zhang   MATOP_FDCOLORING_SETUP      = 142,
1888e5f2d425SStefano Zampini   MATOP_FIND_OFFBLOCK_ENTRIES = 143,
18892d033e1fSHong Zhang   MATOP_MPICONCATENATESEQ     = 144,
1890bb01b7b0SPatrick Sanan   MATOP_DESTROYSUBMATRICES    = 145,
1891e265f6d6SPatrick Sanan   MATOP_TRANSPOSE_SOLVE       = 146,
1892e265f6d6SPatrick Sanan   MATOP_GET_VALUES_LOCAL      = 147
1893fae171e0SBarry Smith } MatOperation;
18940c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void));
1895976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void));
1896976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *);
189794342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *);
1898d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatProductClear() (since version 3.14)") static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A)
1899d71ae5a4SJacob Faibussowitsch {
19009371c9d4SSatish Balay   return MatProductClear(A);
19019371c9d4SSatish Balay }
1902014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void));
1903014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void));
1904014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *);
1905800f99ffSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *));
1906db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType);
1907f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
1908f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
19090c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat);
1910b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType);
1911b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *);
1912112a2221SBarry Smith 
191390ace30eSBarry Smith /*
191490ace30eSBarry Smith    Codes for matrices stored on disk. By default they are
191590ace30eSBarry Smith    stored in a universal format. By changing the format with
19166a9046bcSBarry Smith    PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will
191790ace30eSBarry Smith    be stored in a way natural for the matrix, for example dense matrices
191890ace30eSBarry Smith    would be stored as dense. Matrices stored this way may only be
1919f4403165SShri Abhyankar    read into matrices of the same type.
192090ace30eSBarry Smith */
192190ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1
192290ace30eSBarry Smith 
1923014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal);
192475d48cdbSStefano Zampini 
19258546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType);
192675d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
192775d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool);
1928f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool);
1929014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *);
19303b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *);
1931014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat);
1932e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
193325ef9dfeSBarry Smith PETSC_EXTERN                PETSC_DEPRECATED_FUNCTION("Use the MatConvert() interface (since version 3.10)") PetscErrorCode MatISGetMPIXAIJ(Mat, MatReuse, Mat *);
19341f4e1ec7SBarry Smith 
1935d9274352SBarry Smith /*S
1936d9274352SBarry Smith      MatNullSpace - Object that removes a null space from a vector, i.e.
1937cb6b9846SMatthew Knepley          orthogonalizes the vector to a subspace
1938d9274352SBarry Smith 
1939f7a9e4ceSBarry Smith    Level: advanced
1940d9274352SBarry Smith 
194187497f52SBarry Smith .seealso: `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()`
1942d9274352SBarry Smith S*/
194374637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace;
1944d9274352SBarry Smith 
1945014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *);
1946014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *);
1947014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *);
1948d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec);
1949014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *);
19505fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *);
19515fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace);
1952014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace);
1953014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace);
1954014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *);
1955014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *);
1956014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer);
1957014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **);
1958014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *);
195974637425SBarry Smith 
1960014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS);
1961014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal);
1962014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *);
19633f1d51d7SBarry Smith 
1964014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *);
1965014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *);
1966014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *);
1967c4f061fbSSatish Balay 
19680bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *);
19690bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *);
19700bacdadaSStefano Zampini 
1971d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatComputeOperator() (since version 3.12)") static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B)
1972d71ae5a4SJacob Faibussowitsch {
19739371c9d4SSatish Balay   return MatComputeOperator(A, NULL, B);
19749371c9d4SSatish Balay }
1975d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatComputeOperatorTranspose() (since version 3.12)") static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B)
1976d71ae5a4SJacob Faibussowitsch {
19779371c9d4SSatish Balay   return MatComputeOperatorTranspose(A, NULL, B);
19789371c9d4SSatish Balay }
1979b0a32e0cSBarry Smith 
198049bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *);
198149bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *);
1982a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **);
1983a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
1984a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **);
1985a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **);
1986a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **);
1987a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
1988a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **);
1989a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **);
1990dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat);
1991dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]);
1992dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]);
1993910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *);
199449bd79ccSDebojyoti Ghosh 
1995014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec);
199604f1ad80SBarry Smith 
1997014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
1998014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec);
1999014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *);
2000014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *));
2001014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec));
2002014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt);
2003014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat);
2004014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal);
2005014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt);
2006014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *);
2007014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]);
2008014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *);
2009014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *);
2010e884886fSBarry Smith 
20116370053bSBarry Smith /*S
20126370053bSBarry Smith     MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free
20136370053bSBarry Smith               Jacobian vector products
2014e884886fSBarry Smith 
201595452b02SPatrick Sanan     Notes:
201687497f52SBarry Smith     `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure
20176370053bSBarry Smith 
201887497f52SBarry Smith     MatMFFD*() methods actually take the Mat as their first argument. Not a `MatMFFD` data structure
20196370053bSBarry Smith 
20206370053bSBarry Smith     Level: developer
20216370053bSBarry Smith 
2022db781477SPatrick Sanan .seealso: `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`
20236370053bSBarry Smith S*/
2024e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD;
2025e884886fSBarry Smith 
202676bdecfbSBarry Smith /*J
2027e884886fSBarry Smith     MatMFFDType - algorithm used to compute the h used in computing matrix-vector products via differencing of the function
2028e884886fSBarry Smith 
2029e884886fSBarry Smith    Level: beginner
2030e884886fSBarry Smith 
2031db781477SPatrick Sanan .seealso: `MatMFFDSetType()`, `MatMFFDRegister()`
203276bdecfbSBarry Smith J*/
203319fd82e9SBarry Smith typedef const char *MatMFFDType;
2034e884886fSBarry Smith #define MATMFFD_DS "ds"
2035e884886fSBarry Smith #define MATMFFD_WP "wp"
2036e884886fSBarry Smith 
203719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType);
2038bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD));
2039e884886fSBarry Smith 
2040014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal);
2041014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool);
2042e884886fSBarry Smith 
204361ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType);
204461ab5df0SBarry Smith 
2045014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *);
2046014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *);
20477dbadf16SMatthew Knepley 
204853022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS
204953022affSStefano Zampini PETSC_EXTERN_TYPEDEF typedef PetscScalar (*MatH2OpusKernel)(PetscInt, PetscReal[], PetscReal[], void *);
205053022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernel, void *, PetscReal, PetscInt, PetscInt, Mat *);
205153022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *);
205253022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal);
205353022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat);
205453022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal);
205553022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool);
205653022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *);
205753022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *);
205853022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *);
2059300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar);
2060a0d2e7d8SStefano Zampini #endif
2061a0d2e7d8SStefano Zampini 
2062c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL
206398e73e17SPierre Jolivet PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatHtoolKernel)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *);
2064c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernel, void *, Mat *);
2065c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernel, void *);
206698e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *);
206798e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *);
206898e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool);
2069c7a4214aSPierre Jolivet /*E
207087497f52SBarry Smith      MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL`
2071c7a4214aSPierre Jolivet 
2072c7a4214aSPierre Jolivet    Level: beginner
2073c7a4214aSPierre Jolivet 
2074c7a4214aSPierre Jolivet     Values:
207587497f52SBarry Smith +   `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation
207687497f52SBarry Smith .   `MAT_HTOOL_COMPRESSOR_FULL_ACA` - full adaptive cross approximation
207787497f52SBarry Smith -   `MAT_HTOOL_COMPRESSOR_SVD` - singular value decomposition
2078c7a4214aSPierre Jolivet 
2079db781477SPatrick Sanan .seealso: `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType`
2080c7a4214aSPierre Jolivet E*/
20819371c9d4SSatish Balay typedef enum {
20829371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA,
20839371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_FULL_ACA,
20849371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SVD
20859371c9d4SSatish Balay } MatHtoolCompressorType;
208698e73e17SPierre Jolivet /*E
208787497f52SBarry Smith      MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL`
208898e73e17SPierre Jolivet 
208998e73e17SPierre Jolivet    Level: beginner
209098e73e17SPierre Jolivet 
209198e73e17SPierre Jolivet     Values:
209287497f52SBarry Smith +   `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default) - axis computed via principle component analysis, split uniformly
209387497f52SBarry Smith .   `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC` - axis computed via principle component analysis, split barycentrically
209487497f52SBarry Smith .   `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR` - axis along the largest extent of the bounding box, split uniformly
209587497f52SBarry Smith -   `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically
209698e73e17SPierre Jolivet 
209798e73e17SPierre Jolivet     Notes: higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types
209898e73e17SPierre Jolivet 
2099db781477SPatrick Sanan .seealso: `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType`
210098e73e17SPierre Jolivet E*/
21019371c9d4SSatish Balay typedef enum {
21029371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_REGULAR,
21039371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC,
21049371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR,
21059371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC
21069371c9d4SSatish Balay } MatHtoolClusteringType;
2107c7a4214aSPierre Jolivet #endif
2108c7a4214aSPierre Jolivet 
210997969023SHong Zhang #ifdef PETSC_HAVE_MUMPS
2110014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt);
2111bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *);
2112b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal);
2113bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *);
2114bc6112feSHong Zhang 
2115ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *);
2116ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *);
2117ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *);
2118ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *);
211989a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat);
21200e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat);
212197969023SHong Zhang #endif
212223a5497aSJed Brown 
2123b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO
2124d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt);
2125b500a6b7SJose David Bermeol #endif
2126b500a6b7SJose David Bermeol 
2127d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO
2128d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt);
2129d305a81bSVasiliy Kozyrev #endif
2130d305a81bSVasiliy Kozyrev 
2131d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU
2132014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal);
2133d954db57SHong Zhang #endif
2134d954db57SHong Zhang 
2135fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST
2136fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *);
2137fb785984SHong Zhang #endif
2138fb785984SHong Zhang 
2139575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK
2140542aee0fSPieter Ghysels /*E
214187497f52SBarry Smith     MatSTRUMPACKReordering - sparsity reducing ordering to be used in `STRUMPACK`
2142542aee0fSPieter Ghysels 
2143542aee0fSPieter Ghysels     Level: intermediate
2144542aee0fSPieter Ghysels E*/
21459371c9d4SSatish Balay typedef enum {
21469371c9d4SSatish Balay   MAT_STRUMPACK_NATURAL  = 0,
214734f43fa5SPieter Ghysels   MAT_STRUMPACK_METIS    = 1,
214834f43fa5SPieter Ghysels   MAT_STRUMPACK_PARMETIS = 2,
214934f43fa5SPieter Ghysels   MAT_STRUMPACK_SCOTCH   = 3,
215034f43fa5SPieter Ghysels   MAT_STRUMPACK_PTSCOTCH = 4,
21519371c9d4SSatish Balay   MAT_STRUMPACK_RCM      = 5
21529371c9d4SSatish Balay } MatSTRUMPACKReordering;
215334f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering);
2154575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool);
215534f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSRelTol(Mat, PetscReal);
2156d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSTRUMPACKSetHSSRelTol() (since version 3.9)") static inline PetscErrorCode MatSTRUMPACKSetHSSRelCompTol(Mat mat, PetscReal rtol)
2157d71ae5a4SJacob Faibussowitsch {
21589371c9d4SSatish Balay   return MatSTRUMPACKSetHSSRelTol(mat, rtol);
21599371c9d4SSatish Balay }
216034f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSAbsTol(Mat, PetscReal);
216134f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMinSepSize(Mat, PetscInt);
2162d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSTRUMPACKSetHSSMinSepSize() (since version 3.9)") static inline PetscErrorCode MatSTRUMPACKSetHSSMinSize(Mat mat, PetscInt hssminsize)
2163d71ae5a4SJacob Faibussowitsch {
21649371c9d4SSatish Balay   return MatSTRUMPACKSetHSSMinSepSize(mat, hssminsize);
21659371c9d4SSatish Balay }
216634f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMaxRank(Mat, PetscInt);
2167a36bf211SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSLeafSize(Mat, PetscInt);
2168575704cbSPieter Ghysels #endif
2169575704cbSPieter Ghysels 
2170b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool);
21712216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *);
2172d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatBindToCPU (since v3.13)") static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg)
2173d71ae5a4SJacob Faibussowitsch {
21749371c9d4SSatish Balay   return MatBindToCPU(A, flg);
21759371c9d4SSatish Balay }
217665a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool);
2177e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *);
2178e7e92044SBarry Smith 
2179042217e8SBarry Smith typedef struct _n_SplitCSRMat *PetscSplitCSRDataStructure;
2180042217e8SBarry Smith PETSC_EXTERN PetscErrorCode    MatCUSPARSEGetDeviceMatWrite(Mat, PetscSplitCSRDataStructure *);
2181a587d139SMark 
2182a587d139SMark #ifdef PETSC_HAVE_KOKKOS_KERNELS
2183042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatKokkosGetDeviceMatWrite(Mat, PetscSplitCSRDataStructure *);
2184042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJKokkosSetDeviceMat(Mat, PetscSplitCSRDataStructure);
2185042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJKokkosGetDeviceMat(Mat, PetscSplitCSRDataStructure *);
2186a587d139SMark #endif
2187a587d139SMark 
2188aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA
21893f9c0db1SPaul Mullowney /*E
2190e057df02SPaul Mullowney     MatCUSPARSEStorageFormat - indicates the storage format for CUSPARSE (GPU)
21912692e278SPaul Mullowney     matrices.
2192e057df02SPaul Mullowney 
2193e057df02SPaul Mullowney     Not Collective
2194e057df02SPaul Mullowney 
219587497f52SBarry Smith +   `MAT_CUSPARSE_CSR` - Compressed Sparse Row
219687497f52SBarry Smith .   `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later).
219787497f52SBarry Smith -   `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later).
2198e057df02SPaul Mullowney 
2199e057df02SPaul Mullowney     Level: intermediate
2200e057df02SPaul Mullowney 
220187497f52SBarry Smith    Developer Note:
2202af0996ceSBarry Smith    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
2203e057df02SPaul Mullowney 
2204db781477SPatrick Sanan .seealso: `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation`
2205e057df02SPaul Mullowney E*/
2206e057df02SPaul Mullowney 
22079371c9d4SSatish Balay typedef enum {
22089371c9d4SSatish Balay   MAT_CUSPARSE_CSR,
22099371c9d4SSatish Balay   MAT_CUSPARSE_ELL,
22109371c9d4SSatish Balay   MAT_CUSPARSE_HYB
22119371c9d4SSatish Balay } MatCUSPARSEStorageFormat;
2212e057df02SPaul Mullowney 
2213e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */
2214e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[];
2215e057df02SPaul Mullowney 
22163f9c0db1SPaul Mullowney /*E
2217e057df02SPaul Mullowney     MatCUSPARSEFormatOperation - indicates the operation of CUSPARSE (GPU)
22182692e278SPaul Mullowney     matrices whose operation should use a particular storage format.
2219e057df02SPaul Mullowney 
2220e057df02SPaul Mullowney     Not Collective
2221e057df02SPaul Mullowney 
222287497f52SBarry Smith +   `MAT_CUSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel MatMult
222387497f52SBarry Smith .   `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel MatMult
222487497f52SBarry Smith .   `MAT_CUSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) MatMult
222587497f52SBarry Smith -   `MAT_CUSPARSE_ALL` - sets the storage format for all CUSPARSE (GPU) matrices
2226e057df02SPaul Mullowney 
2227e057df02SPaul Mullowney     Level: intermediate
2228e057df02SPaul Mullowney 
2229db781477SPatrick Sanan .seealso: `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat`
2230e057df02SPaul Mullowney E*/
22319371c9d4SSatish Balay typedef enum {
22329371c9d4SSatish Balay   MAT_CUSPARSE_MULT_DIAG,
22339371c9d4SSatish Balay   MAT_CUSPARSE_MULT_OFFDIAG,
22349371c9d4SSatish Balay   MAT_CUSPARSE_MULT,
22359371c9d4SSatish Balay   MAT_CUSPARSE_ALL
22369371c9d4SSatish Balay } MatCUSPARSEFormatOperation;
2237e057df02SPaul Mullowney 
223810e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
223910e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2240e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat);
2241365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool);
22425f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
22435f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
22445f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **);
22455f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **);
22465f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **);
22475f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **);
22485f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **);
22495f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **);
2250637a0070SStefano Zampini 
2251637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
2252637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
2253637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat, PetscScalar[]);
2254637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqDenseCUDASetPreallocation(Mat, PetscScalar[]);
2255637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **);
2256637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **);
2257637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **);
2258637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **);
2259637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **);
2260637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **);
2261637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *);
2262d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *);
2263637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat);
22643fa6b06aSMark Adams 
22659ae82921SPaul Mullowney #endif
22669ae82921SPaul Mullowney 
226747d993e7Ssuyashtn #ifdef PETSC_HAVE_HIP
226847d993e7Ssuyashtn /*E
226947d993e7Ssuyashtn     MatHIPSPARSEStorageFormat - indicates the storage format for HIPSPARSE (GPU)
227047d993e7Ssuyashtn     matrices.
227147d993e7Ssuyashtn 
227247d993e7Ssuyashtn     Not Collective
227347d993e7Ssuyashtn 
227447d993e7Ssuyashtn +   MAT_HIPSPARSE_CSR - Compressed Sparse Row
227547d993e7Ssuyashtn .   MAT_HIPSPARSE_ELL - Ellpack
227647d993e7Ssuyashtn -   MAT_HIPSPARSE_HYB - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later).
227747d993e7Ssuyashtn 
227847d993e7Ssuyashtn     Level: intermediate
227947d993e7Ssuyashtn 
228047d993e7Ssuyashtn    Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h
228147d993e7Ssuyashtn 
228247d993e7Ssuyashtn .seealso: `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation`
228347d993e7Ssuyashtn E*/
228447d993e7Ssuyashtn 
228547d993e7Ssuyashtn typedef enum {
228647d993e7Ssuyashtn   MAT_HIPSPARSE_CSR,
228747d993e7Ssuyashtn   MAT_HIPSPARSE_ELL,
228847d993e7Ssuyashtn   MAT_HIPSPARSE_HYB
228947d993e7Ssuyashtn } MatHIPSPARSEStorageFormat;
229047d993e7Ssuyashtn 
229147d993e7Ssuyashtn /* these will be strings associated with enumerated type defined above */
229247d993e7Ssuyashtn PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[];
229347d993e7Ssuyashtn 
229447d993e7Ssuyashtn /*E
229547d993e7Ssuyashtn     MatHIPSPARSEFormatOperation - indicates the operation of HIPSPARSE (GPU)
229647d993e7Ssuyashtn     matrices whose operation should use a particular storage format.
229747d993e7Ssuyashtn 
229847d993e7Ssuyashtn     Not Collective
229947d993e7Ssuyashtn 
230047d993e7Ssuyashtn +   MAT_HIPSPARSE_MULT_DIAG - sets the storage format for the diagonal matrix in the parallel MatMult
230147d993e7Ssuyashtn .   MAT_HIPSPARSE_MULT_OFFDIAG - sets the storage format for the offdiagonal matrix in the parallel MatMult
230247d993e7Ssuyashtn .   MAT_HIPSPARSE_MULT - sets the storage format for the entire matrix in the serial (single GPU) MatMult
230347d993e7Ssuyashtn -   MAT_HIPSPARSE_ALL - sets the storage format for all HIPSPARSE (GPU) matrices
230447d993e7Ssuyashtn 
230547d993e7Ssuyashtn     Level: intermediate
230647d993e7Ssuyashtn 
230747d993e7Ssuyashtn .seealso: `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat`
230847d993e7Ssuyashtn E*/
230947d993e7Ssuyashtn typedef enum {
231047d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_DIAG,
231147d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_OFFDIAG,
231247d993e7Ssuyashtn   MAT_HIPSPARSE_MULT,
231347d993e7Ssuyashtn   MAT_HIPSPARSE_ALL
231447d993e7Ssuyashtn } MatHIPSPARSEFormatOperation;
231547d993e7Ssuyashtn 
231647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
231747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
231847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat);
231947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool);
232047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
232147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
232247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **);
232347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **);
232447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **);
232547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **);
232647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **);
232747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **);
232847d993e7Ssuyashtn 
232947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
233047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
233147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatMPIDenseHIPSetPreallocation(Mat, PetscScalar[]);
233247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqDenseHIPSetPreallocation(Mat, PetscScalar[]);
233347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **);
233447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **);
233547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **);
233647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **);
233747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **);
233847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **);
233947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *);
234047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *);
234147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat);
234247d993e7Ssuyashtn 
234347d993e7Ssuyashtn #endif
234447d993e7Ssuyashtn 
2345d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL)
2346d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2347d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2348d67ff14aSKarl Rupp #endif
2349d67ff14aSKarl Rupp 
235054efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW)
2351014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec);
2352014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec);
23532a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *);
235454efbe56SHong Zhang #endif
235554efbe56SHong Zhang 
2356d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
2357d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2358d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt);
2359d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *);
2360d24d4204SJose E. Roman #endif
2361d24d4204SJose E. Roman 
2362014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *);
2363014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *);
2364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]);
2365014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]);
2366014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***);
2367014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *);
236819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType);
2369014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]);
2370014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat);
2371d8588912SDave May 
23724325cce7SMatthew G Knepley PETSC_EXTERN PetscErrorCode MatChop(Mat, PetscReal);
2373e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *);
23744325cce7SMatthew G Knepley 
2375b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **);
237653dd7562SDmitry Karpeev 
2377c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat);
2378c094ef40SMatthew G. Knepley 
2379539c167fSBarry Smith PETSC_INTERN PetscErrorCode MatHeaderMerge(Mat, Mat *);
2380539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *);
23811a2c6b5cSJunchao Zhang 
23827ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *);
238372833a62Smarkadams4 
23842d776b49SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, Mat *);
238523a5497aSJed Brown #endif
2386