12eac72dbSBarry Smith /* 22eac72dbSBarry Smith Include file for the matrix component of PETSc 32eac72dbSBarry Smith */ 426bd1501SBarry Smith #ifndef PETSCMAT_H 526bd1501SBarry Smith #define PETSCMAT_H 6ac09b921SBarry Smith 72c8e378dSBarry Smith #include <petscvec.h> 82eac72dbSBarry Smith 9ac09b921SBarry Smith /* SUBMANSEC = Mat */ 10ac09b921SBarry Smith 11d9274352SBarry Smith /*S 128f6c3df8SBarry Smith Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without 138f6c3df8SBarry Smith an explicit sparse representation (such as matrix-free operators) 142eac72dbSBarry Smith 15d91e6319SBarry Smith Level: beginner 16d91e6319SBarry Smith 17db781477SPatrick Sanan .seealso: `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()` 18d9274352SBarry Smith S*/ 19d9274352SBarry Smith typedef struct _p_Mat *Mat; 20d9274352SBarry Smith 2176bdecfbSBarry Smith /*J 228f6c3df8SBarry Smith MatType - String with the name of a PETSc matrix type 23d9274352SBarry Smith 24d9274352SBarry Smith Level: beginner 25d9274352SBarry Smith 26db781477SPatrick Sanan .seealso: `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()` 2776bdecfbSBarry Smith J*/ 2819fd82e9SBarry Smith typedef const char *MatType; 29273d9f13SBarry Smith #define MATSAME "same" 305a11e1b2SBarry Smith #define MATMAIJ "maij" 31273d9f13SBarry Smith #define MATSEQMAIJ "seqmaij" 32273d9f13SBarry Smith #define MATMPIMAIJ "mpimaij" 3349bd79ccSDebojyoti Ghosh #define MATKAIJ "kaij" 3449bd79ccSDebojyoti Ghosh #define MATSEQKAIJ "seqkaij" 3549bd79ccSDebojyoti Ghosh #define MATMPIKAIJ "mpikaij" 36273d9f13SBarry Smith #define MATIS "is" 375a11e1b2SBarry Smith #define MATAIJ "aij" 38273d9f13SBarry Smith #define MATSEQAIJ "seqaij" 39273d9f13SBarry Smith #define MATMPIAIJ "mpiaij" 405a11e1b2SBarry Smith #define MATAIJCRL "aijcrl" 415a11e1b2SBarry Smith #define MATSEQAIJCRL "seqaijcrl" 425a11e1b2SBarry Smith #define MATMPIAIJCRL "mpiaijcrl" 439ae82921SPaul Mullowney #define MATAIJCUSPARSE "aijcusparse" 449ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE "seqaijcusparse" 459ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE "mpiaijcusparse" 4647d993e7Ssuyashtn #define MATAIJHIPSPARSE "aijhipsparse" 4747d993e7Ssuyashtn #define MATSEQAIJHIPSPARSE "seqaijhipsparse" 4847d993e7Ssuyashtn #define MATMPIAIJHIPSPARSE "mpiaijhipsparse" 498c3ff71bSJunchao Zhang #define MATAIJKOKKOS "aijkokkos" 508c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS "seqaijkokkos" 518c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS "mpiaijkokkos" 52d67ff14aSKarl Rupp #define MATAIJVIENNACL "aijviennacl" 53d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL "seqaijviennacl" 54d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL "mpiaijviennacl" 555a11e1b2SBarry Smith #define MATAIJPERM "aijperm" 565a11e1b2SBarry Smith #define MATSEQAIJPERM "seqaijperm" 575a11e1b2SBarry Smith #define MATMPIAIJPERM "mpiaijperm" 584dfdc2d9SRichard Tran Mills #define MATAIJSELL "aijsell" 594dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL "seqaijsell" 604dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL "mpiaijsell" 614a2a386eSRichard Tran Mills #define MATAIJMKL "aijmkl" 624a2a386eSRichard Tran Mills #define MATSEQAIJMKL "seqaijmkl" 634a2a386eSRichard Tran Mills #define MATMPIAIJMKL "mpiaijmkl" 64b5b72c8aSIrina Sokolova #define MATBAIJMKL "baijmkl" 65b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL "seqbaijmkl" 66b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL "mpibaijmkl" 67273d9f13SBarry Smith #define MATSHELL "shell" 68c1fff1c6SRichard Tran Mills #define MATCENTERING "centering" 695a11e1b2SBarry Smith #define MATDENSE "dense" 70637a0070SStefano Zampini #define MATDENSECUDA "densecuda" 7147d993e7Ssuyashtn #define MATDENSEHIP "densehip" 72209238afSKris Buschelman #define MATSEQDENSE "seqdense" 73bfc799aaSStefano Zampini #define MATSEQDENSECUDA "seqdensecuda" 7447d993e7Ssuyashtn #define MATSEQDENSEHIP "seqdensehip" 75273d9f13SBarry Smith #define MATMPIDENSE "mpidense" 76637a0070SStefano Zampini #define MATMPIDENSECUDA "mpidensecuda" 7747d993e7Ssuyashtn #define MATMPIDENSEHIP "mpidensehip" 78db31f6deSJed Brown #define MATELEMENTAL "elemental" 79d24d4204SJose E. Roman #define MATSCALAPACK "scalapack" 805a11e1b2SBarry Smith #define MATBAIJ "baij" 81273d9f13SBarry Smith #define MATSEQBAIJ "seqbaij" 82273d9f13SBarry Smith #define MATMPIBAIJ "mpibaij" 83273d9f13SBarry Smith #define MATMPIADJ "mpiadj" 845a11e1b2SBarry Smith #define MATSBAIJ "sbaij" 85273d9f13SBarry Smith #define MATSEQSBAIJ "seqsbaij" 86273d9f13SBarry Smith #define MATMPISBAIJ "mpisbaij" 87cebc7f6cSBarry Smith #define MATMFFD "mffd" 88c8a8475eSBarry Smith #define MATNORMAL "normal" 89c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN "normalh" 90ab92ecdeSBarry Smith #define MATLRC "lrc" 912a6744ebSBarry Smith #define MATSCATTER "scatter" 92421e10b8SBarry Smith #define MATBLOCKMAT "blockmat" 93793850ffSBarry Smith #define MATCOMPOSITE "composite" 941f8c7532SHong Zhang #define MATFFT "fft" 951f8c7532SHong Zhang #define MATFFTW "fftw" 96e133240eSMatthew G Knepley #define MATSEQCUFFT "seqcufft" 9747d993e7Ssuyashtn #define MATSEQHIPFFT "seqhipfft" 98013e2dc7SBarry Smith #define MATTRANSPOSEMAT PETSC_DEPRECATED_MACRO("GCC warning \"MATTRANSPOSEMAT macro is deprecated use MATTRANSPOSEVIRTUAL (since version 3.18)\"") "transpose" 99013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL "transpose" 100013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose" 10172ca8751SBarry Smith #define MATSCHURCOMPLEMENT "schurcomplement" 1021d6018f0SLisandro Dalcin #define MATPYTHON "python" 10363c07aadSStefano Zampini #define MATHYPRE "hypre" 104f91d8e95SBarry Smith #define MATHYPRESTRUCT "hyprestruct" 105a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT "hypresstruct" 106ee1cef2cSJed Brown #define MATSUBMATRIX "submatrix" 1072c0dbf93SJed Brown #define MATLOCALREF "localref" 108d8588912SDave May #define MATNEST "nest" 109c094ef40SMatthew G. Knepley #define MATPREALLOCATOR "preallocator" 110d4002b98SHong Zhang #define MATSELL "sell" 111d4002b98SHong Zhang #define MATSEQSELL "seqsell" 112d4002b98SHong Zhang #define MATMPISELL "mpisell" 113a3b2e22bSHong Zhang #define MATDUMMY "dummy" 114cd929ea3SAlp Dener #define MATLMVM "lmvm" 11578e4361aSAlp Dener #define MATLMVMDFP "lmvmdfp" 11678e4361aSAlp Dener #define MATLMVMBFGS "lmvmbfgs" 11778e4361aSAlp Dener #define MATLMVMSR1 "lmvmsr1" 118864588a7SAlp Dener #define MATLMVMBROYDEN "lmvmbroyden" 119864588a7SAlp Dener #define MATLMVMBADBROYDEN "lmvmbadbroyden" 120864588a7SAlp Dener #define MATLMVMSYMBROYDEN "lmvmsymbroyden" 121864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN "lmvmsymbadbroyden" 122864588a7SAlp Dener #define MATLMVMDIAGBROYDEN "lmvmdiagbroyden" 1233423f386SBarry Smith #define MATCONSTANTDIAGONAL "constantdiagonal" 124c7a4214aSPierre Jolivet #define MATHTOOL "htool" 12553022affSStefano Zampini #define MATH2OPUS "h2opus" 126773941d6SBarry Smith 12776bdecfbSBarry Smith /*J 1283ca39a21SBarry Smith MatSolverType - String with the name of a PETSc matrix solver type. 1299989ab13SBarry Smith 130c2b89b5dSBarry Smith For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc 1319989ab13SBarry Smith 1329989ab13SBarry Smith Level: beginner 1339989ab13SBarry Smith 1343f498edaSToby Isaac Notes: MATSOLVERUMFPACK, MATSOLVERCHOLMOD, MATSOLVERKLU, MATSOLVERSPQR form the SuiteSparse package for which you can use --download-suitesparse 135c7ccbb75SBarry Smith 136db781477SPatrick Sanan .seealso: `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()` 13776bdecfbSBarry Smith J*/ 138ea799195SBarry Smith typedef const char *MatSolverType; 1392692d6eeSBarry Smith #define MATSOLVERSUPERLU "superlu" 1402692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST "superlu_dist" 14108f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK "strumpack" 1422692d6eeSBarry Smith #define MATSOLVERUMFPACK "umfpack" 14320db9a53SJed Brown #define MATSOLVERCHOLMOD "cholmod" 144d89f5e7aSBarry Smith #define MATSOLVERKLU "klu" 145418810c4SBarry Smith #define MATSOLVERSPARSEELEMENTAL "sparseelemental" 146d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL "elemental" 147d24d4204SJose E. Roman #define MATSOLVERSCALAPACK "scalapack" 1482692d6eeSBarry Smith #define MATSOLVERESSL "essl" 1492692d6eeSBarry Smith #define MATSOLVERLUSOL "lusol" 1502692d6eeSBarry Smith #define MATSOLVERMUMPS "mumps" 151d615f992SSatish Balay #define MATSOLVERMKL_PARDISO "mkl_pardiso" 152d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO "mkl_cpardiso" 1532692d6eeSBarry Smith #define MATSOLVERPASTIX "pastix" 1542692d6eeSBarry Smith #define MATSOLVERMATLAB "matlab" 1552692d6eeSBarry Smith #define MATSOLVERPETSC "petsc" 1562692d6eeSBarry Smith #define MATSOLVERBAS "bas" 1579ae82921SPaul Mullowney #define MATSOLVERCUSPARSE "cusparse" 158bddcd29dSMark Adams #define MATSOLVERCUSPARSEBAND "cusparseband" 159bfc799aaSStefano Zampini #define MATSOLVERCUDA "cuda" 16047d993e7Ssuyashtn #define MATSOLVERHIPSPARSE "hipsparse" 16147d993e7Ssuyashtn #define MATSOLVERHIPSPARSEBAND "hipsparseband" 16247d993e7Ssuyashtn #define MATSOLVERHIP "hip" 163930e68a5SMark Adams #define MATSOLVERKOKKOS "kokkos" 1648f7e8f9dSMark Adams #define MATSOLVERKOKKOSDEVICE "kokkosdevice" 165a2fc1e05SToby Isaac #define MATSOLVERSPQR "spqr" 166c0cdd4a1SDahai Guo 167b24902e0SBarry Smith /*E 168b24902e0SBarry Smith MatFactorType - indicates what type of factorization is requested 169b24902e0SBarry Smith 170b24902e0SBarry Smith Level: beginner 171b24902e0SBarry Smith 172af0996ceSBarry Smith Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 173b24902e0SBarry Smith 174db781477SPatrick Sanan .seealso: `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()` 175b24902e0SBarry Smith E*/ 1769371c9d4SSatish Balay typedef enum { 1779371c9d4SSatish Balay MAT_FACTOR_NONE, 1789371c9d4SSatish Balay MAT_FACTOR_LU, 1799371c9d4SSatish Balay MAT_FACTOR_CHOLESKY, 1809371c9d4SSatish Balay MAT_FACTOR_ILU, 1819371c9d4SSatish Balay MAT_FACTOR_ICC, 1829371c9d4SSatish Balay MAT_FACTOR_ILUDT, 1839371c9d4SSatish Balay MAT_FACTOR_QR, 1849371c9d4SSatish Balay MAT_FACTOR_NUM_TYPES 1859371c9d4SSatish Balay } MatFactorType; 186014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[]; 187e92e720dSBarry Smith 188ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *); 189ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *); 190f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *); 191d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatFactorGetCanUseOrdering() (since version 3.15)") static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b) 192d71ae5a4SJacob Faibussowitsch { 1939371c9d4SSatish Balay return MatFactorGetCanUseOrdering(A, b); 1949371c9d4SSatish Balay } 195ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *); 196014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *); 1977abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType); 1982430ea28SJose E. Roman PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatSolverFunction)(Mat, MatFactorType, Mat *); 1992430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFunction); 2002430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFunction *); 20125ef9dfeSBarry Smith typedef MatSolverType MatSolverPackage PETSC_DEPRECATED_TYPEDEF("Use MatSolverType (since version 3.9)"); 202d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSolverTypeRegister() (since version 3.9)") static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFunction f) 203d71ae5a4SJacob Faibussowitsch { 2049371c9d4SSatish Balay return MatSolverTypeRegister(stype, mtype, ftype, f); 2059371c9d4SSatish Balay } 206d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSolverTypeGet() (since version 3.9)") static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFunction *f) 207d71ae5a4SJacob Faibussowitsch { 2089371c9d4SSatish Balay return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f); 2099371c9d4SSatish Balay } 2109989ab13SBarry Smith 2114222ddf1SHong Zhang /*E 2124222ddf1SHong Zhang MatProductType - indicates what type of matrix product is requested 2134222ddf1SHong Zhang 2144222ddf1SHong Zhang Level: beginner 2154222ddf1SHong Zhang 216db781477SPatrick Sanan .seealso: `MatProductSetType()` 2174222ddf1SHong Zhang E*/ 2189371c9d4SSatish Balay typedef enum { 2199371c9d4SSatish Balay MATPRODUCT_UNSPECIFIED = 0, 2209371c9d4SSatish Balay MATPRODUCT_AB, 2219371c9d4SSatish Balay MATPRODUCT_AtB, 2229371c9d4SSatish Balay MATPRODUCT_ABt, 2239371c9d4SSatish Balay MATPRODUCT_PtAP, 2249371c9d4SSatish Balay MATPRODUCT_RARt, 2259371c9d4SSatish Balay MATPRODUCT_ABC 2269371c9d4SSatish Balay } MatProductType; 227544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[]; 2284222ddf1SHong Zhang 2294222ddf1SHong Zhang /*J 2304222ddf1SHong Zhang MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation 2314222ddf1SHong Zhang 2324222ddf1SHong Zhang Level: beginner 2334222ddf1SHong Zhang 234db781477SPatrick Sanan .seealso: `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType` 2354222ddf1SHong Zhang J*/ 2364222ddf1SHong Zhang typedef const char *MatProductAlgorithm; 2373e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT "default" 2383e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED "sorted" 2393e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE "scalable" 2403e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST "scalable_fast" 2413e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP "heap" 2423e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP "btheap" 2433e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED "llcondensed" 2443e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE "rowmerge" 2453e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT "outerproduct" 2463e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB "at*b" 2473e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP "rap" 2483e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE "nonscalable" 2493e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI "seqmpi" 2503e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND "backend" 2513e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING "overlapping" 2523e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED "merged" 2533e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE "allatonce" 2543e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged" 2553e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV "allgatherv" 2563e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC "cyclic" 2573e662e0bSHong Zhang #if defined(PETSC_HAVE_HYPRE) 2583e662e0bSHong Zhang #define MATPRODUCTALGORITHMHYPRE "hypre" 2593e662e0bSHong Zhang #endif 2604222ddf1SHong Zhang 2614222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *); 2624222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat); 2634222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType); 2644222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm); 2654222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal); 2664222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat); 2674222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat); 2684222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat); 2694222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat); 2704417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat); 2716718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer); 272c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *); 273c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *); 2744222ddf1SHong Zhang 275c06d978dSMatthew Knepley /* Logging support */ 2760700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */ 277014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID; 278335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID; 279014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID; 280014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID; 281014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID; 282014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID; 283014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID; 284014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID; 285c06d978dSMatthew Knepley 286ceb03754SKris Buschelman /*E 2877dae84e0SHong Zhang MatReuse - Indicates if matrices obtained from a previous call to MatCreateSubMatrices(), MatCreateSubMatrix(), MatConvert() or several other functions 288cf37664fSBarry Smith are to be reused to store the new matrix values. 289cf37664fSBarry Smith 290cf37664fSBarry Smith $ MAT_INITIAL_MATRIX - create a new matrix 291cf37664fSBarry Smith $ MAT_REUSE_MATRIX - reuse the matrix created with a previous call that used MAT_INITIAL_MATRIX 292cf37664fSBarry Smith $ MAT_INPLACE_MATRIX - replace the first input matrix with the new matrix (not applicable to all functions) 293cf37664fSBarry Smith $ MAT_IGNORE_MATRIX - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions) 294ceb03754SKris Buschelman 295ceb03754SKris Buschelman Level: beginner 296ceb03754SKris Buschelman 297af0996ceSBarry Smith Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 298ceb03754SKris Buschelman 299db781477SPatrick Sanan .seealso: `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()` 300ceb03754SKris Buschelman E*/ 3019371c9d4SSatish Balay typedef enum { 3029371c9d4SSatish Balay MAT_INITIAL_MATRIX, 3039371c9d4SSatish Balay MAT_REUSE_MATRIX, 3049371c9d4SSatish Balay MAT_IGNORE_MATRIX, 3059371c9d4SSatish Balay MAT_INPLACE_MATRIX 3069371c9d4SSatish Balay } MatReuse; 307ceb03754SKris Buschelman 3085494a064SHong Zhang /*E 3097dae84e0SHong Zhang MatCreateSubMatrixOption - Indicates if matrices obtained from a call to MatCreateSubMatrices() 310446c23c1SPierre Jolivet include the matrix values. Currently it is only used by MatGetSeqNonzeroStructure(). 3115494a064SHong Zhang 3125494a064SHong Zhang Level: beginner 3135494a064SHong Zhang 314db781477SPatrick Sanan .seealso: `MatGetSeqNonzeroStructure()` 3155494a064SHong Zhang E*/ 3169371c9d4SSatish Balay typedef enum { 3179371c9d4SSatish Balay MAT_DO_NOT_GET_VALUES, 3189371c9d4SSatish Balay MAT_GET_VALUES 3199371c9d4SSatish Balay } MatCreateSubMatrixOption; 3205494a064SHong Zhang 321607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void); 322c06d978dSMatthew Knepley 323014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *); 324014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt); 32519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType); 3260d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *); 3270d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType); 328014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat); 329fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]); 330bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat)); 33123bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]); 332014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]); 33326cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]); 33426cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]); 335014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]); 336014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]); 33784d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool); 338f69a0ea3SMatthew Knepley 339140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList; 340140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList; 341140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList; 34228988994SBarry Smith 3433b224e63SBarry Smith /*E 344aa6c7ce3SBarry Smith MatStructure - Indicates if two matrices have the same nonzero structure 3453b224e63SBarry Smith 3463b224e63SBarry Smith Level: beginner 3473b224e63SBarry Smith 348531d0c6aSBarry Smith $ SAME_NONZERO_PATTERN - the two matrices have identical nonzero patterns 349531d0c6aSBarry Smith $ DIFFERENT_NONZERO_PATTERN - the two matrices may have different nonzero patterns 350531d0c6aSBarry Smith $ SUBSET_NONZERO_PATTERN - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix 351531d0c6aSBarry Smith $ UNKNOWN_NONZERO_PATTERN - there is no known relationship between the nonzero patterns. In this case the implementations may try to detect a relationship to optimize the operation 352531d0c6aSBarry Smith 353531d0c6aSBarry Smith Developer Notes: 354d60b7d5cSBarry Smith Any additions/changes here MUST also be made in src/mat/f90-mod/petscmat.h 3553b224e63SBarry Smith 356db781477SPatrick Sanan .seealso: `MatCopy()`, `MatAXPY()`, `MatAYPX()` 3573b224e63SBarry Smith E*/ 3589371c9d4SSatish Balay typedef enum { 3599371c9d4SSatish Balay DIFFERENT_NONZERO_PATTERN, 3609371c9d4SSatish Balay SUBSET_NONZERO_PATTERN, 3619371c9d4SSatish Balay SAME_NONZERO_PATTERN, 3629371c9d4SSatish Balay UNKNOWN_NONZERO_PATTERN 3639371c9d4SSatish Balay } MatStructure; 364d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[]; 3653b224e63SBarry Smith 3669779e05dSSatish Balay #if defined PETSC_HAVE_MKL_SPARSE 367ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 368ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 36980095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 370ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 37180095d54SIrina Sokolova #endif 372cd929ea3SAlp Dener 373d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 374d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 375d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]); 376d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 37780095d54SIrina Sokolova 378014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 379014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 380014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 381014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 382014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 3838f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 3846a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]); 385014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *); 3863b00a383SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *); 3873b00a383SHong Zhang 388014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 389014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 390014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 3917e8381f9SStefano Zampini 392e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]); 39382a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]); 3947e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode); 395d21a29f3SJed Brown 396014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *); 397014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 398d21a29f3SJed Brown 399014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 400014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 40138f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 402014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 4034cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]); 404dfb205c3SBarry Smith 405014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *); 406c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *); 407014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *); 408c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *); 409986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *); 410267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *); 411c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *); 412014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 413014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 414c0cdd4a1SDahai Guo 415014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *); 416014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter); 417014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *); 418014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *); 419014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat); 420014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat); 4219371c9d4SSatish Balay typedef enum { 4229371c9d4SSatish Balay MAT_COMPOSITE_MERGE_RIGHT, 4239371c9d4SSatish Balay MAT_COMPOSITE_MERGE_LEFT 4249371c9d4SSatish Balay } MatCompositeMergeType; 4258c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType); 426014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *); 4279371c9d4SSatish Balay typedef enum { 4289371c9d4SSatish Balay MAT_COMPOSITE_ADDITIVE, 4299371c9d4SSatish Balay MAT_COMPOSITE_MULTIPLICATIVE 4309371c9d4SSatish Balay } MatCompositeType; 431014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType); 4326dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *); 4333b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure); 4343b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *); 4356d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *); 4368b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *); 43703049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *); 4386d7c1e57SBarry Smith 43919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *); 440014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *); 441dedccee8SHong Zhang 442014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *); 4438060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *); 444d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *); 44506511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *); 446fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *); 44765f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *); 44854e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *); 44954e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS); 450014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *); 4513423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *); 4521472f72bSBarry Smith 453978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE) 454d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 455978814f1SStefano Zampini #endif 456978814f1SStefano Zampini 457014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]); 458ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]); 4591d6018f0SLisandro Dalcin 460846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat); 461014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat); 462014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *); 463e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *); 46421c89e3eSBarry Smith 465014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat); 466014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat); 467014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat); 468014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *); 469014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *); 470713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **); 4710da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *); 472479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat); 4738a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *); 47499cafbc1SBarry Smith 4758ed539a5SBarry Smith /* ------------------------------------------------------------*/ 476014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 4778a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode); 478014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 479014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]); 480014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]); 481014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]); 48273a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom); 48384cb2905SBarry Smith 4842ef4de8bSBarry Smith /*S 4852ef4de8bSBarry Smith MatStencil - Data structure (C struct) for storing information about a single row or 48687497f52SBarry Smith column of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()` 48762ef0227SBarry Smith 48862ef0227SBarry Smith The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored). 48987497f52SBarry Smith The c represents the the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored. 49062ef0227SBarry Smith 49187497f52SBarry Smith For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`. 492be479b30SJed Brown 49387497f52SBarry Smith Fortran usage is different, see `MatSetValuesStencil()` for details. 4942ef4de8bSBarry Smith 4952ef4de8bSBarry Smith Level: beginner 4962ef4de8bSBarry Smith 497db781477SPatrick Sanan .seealso: `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()` 4982ef4de8bSBarry Smith S*/ 499435da068SBarry Smith typedef struct { 500c1ac3661SBarry Smith PetscInt k, j, i, c; 501435da068SBarry Smith } MatStencil; 5022ef4de8bSBarry Smith 503014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 504014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 505014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt); 506435da068SBarry Smith 507d91e6319SBarry Smith /*E 50887497f52SBarry Smith MatAssemblyType - Indicates if the matrix is now to be used, for example in a solver, or if you plan 50962ef0227SBarry Smith to continue to add or insert values to it 510d91e6319SBarry Smith 511d91e6319SBarry Smith Level: beginner 512d91e6319SBarry Smith 513db781477SPatrick Sanan .seealso: `MatAssemblyBegin()`, `MatAssemblyEnd()` 514d91e6319SBarry Smith E*/ 5159371c9d4SSatish Balay typedef enum { 5169371c9d4SSatish Balay MAT_FLUSH_ASSEMBLY = 1, 5179371c9d4SSatish Balay MAT_FINAL_ASSEMBLY = 0 5189371c9d4SSatish Balay } MatAssemblyType; 519014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType); 520014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType); 521014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *); 5224f9c727eSBarry Smith 523d91e6319SBarry Smith /*E 524d91e6319SBarry Smith MatOption - Options that may be set for a matrix and its behavior or storage 525d91e6319SBarry Smith 526d91e6319SBarry Smith Level: beginner 527d91e6319SBarry Smith 52895452b02SPatrick Sanan Developer Notes: 52995452b02SPatrick Sanan Entries that are negative need not be called collectively by all processes. 530382164b0SBarry Smith 53187497f52SBarry Smith Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 53287497f52SBarry Smith 53387497f52SBarry Smith Any additions/changes here must also be made in src/mat/interface/dlregismat.c in MatOptions[] 53487497f52SBarry Smith 535db781477SPatrick Sanan .seealso: `MatSetOption()` 536d91e6319SBarry Smith E*/ 5379371c9d4SSatish Balay typedef enum { 5389371c9d4SSatish Balay MAT_OPTION_MIN = -3, 539c5e4d11fSDmitry Karpeev MAT_UNUSED_NONZERO_LOCATION_ERR = -2, 54092d4d306SBarry Smith MAT_ROW_ORIENTED = -1, 541382164b0SBarry Smith MAT_SYMMETRIC = 1, 542382164b0SBarry Smith MAT_STRUCTURALLY_SYMMETRIC = 2, 5438c78258cSHong Zhang MAT_FORCE_DIAGONAL_ENTRIES = 3, 544382164b0SBarry Smith MAT_IGNORE_OFF_PROC_ENTRIES = 4, 545382164b0SBarry Smith MAT_USE_HASH_TABLE = 5, 546382164b0SBarry Smith MAT_KEEP_NONZERO_PATTERN = 6, 547382164b0SBarry Smith MAT_IGNORE_ZERO_ENTRIES = 7, 548382164b0SBarry Smith MAT_USE_INODES = 8, 549382164b0SBarry Smith MAT_HERMITIAN = 9, 550382164b0SBarry Smith MAT_SYMMETRY_ETERNAL = 10, 551c5e4d11fSDmitry Karpeev MAT_NEW_NONZERO_LOCATION_ERR = 11, 552382164b0SBarry Smith MAT_IGNORE_LOWER_TRIANGULAR = 12, 553382164b0SBarry Smith MAT_ERROR_LOWER_TRIANGULAR = 13, 554382164b0SBarry Smith MAT_GETROW_UPPERTRIANGULAR = 14, 555382164b0SBarry Smith MAT_SPD = 15, 55692d4d306SBarry Smith MAT_NO_OFF_PROC_ZERO_ROWS = 16, 55792d4d306SBarry Smith MAT_NO_OFF_PROC_ENTRIES = 17, 55892d4d306SBarry Smith MAT_NEW_NONZERO_LOCATIONS = 18, 559c5e4d11fSDmitry Karpeev MAT_NEW_NONZERO_ALLOCATION_ERR = 19, 560c5e4d11fSDmitry Karpeev MAT_SUBSET_OFF_PROC_ENTRIES = 20, 561c10200c1SHong Zhang MAT_SUBMAT_SINGLEIS = 21, 562957cac9fSHong Zhang MAT_STRUCTURE_ONLY = 22, 563071fcb05SBarry Smith MAT_SORTED_FULL = 23, 5641a2c6b5cSJunchao Zhang MAT_FORM_EXPLICIT_TRANSPOSE = 24, 565b94d7dedSBarry Smith MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25, 566b94d7dedSBarry Smith MAT_SPD_ETERNAL = 26, 5679371c9d4SSatish Balay MAT_OPTION_MAX = 27 5689371c9d4SSatish Balay } MatOption; 569e057df02SPaul Mullowney 5700f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions; 571014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOption(Mat, MatOption, PetscBool); 5727d68702bSBarry Smith PETSC_EXTERN PetscErrorCode MatGetOption(Mat, MatOption, PetscBool *); 573856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode MatPropagateSymmetryOptions(Mat, Mat); 57419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetType(Mat, MatType *); 57584cb2905SBarry Smith 576014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 577014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 578014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 579014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowUpperTriangular(Mat); 580014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowUpperTriangular(Mat); 581014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnVector(Mat, Vec, PetscInt); 5828c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetArray(Mat, PetscScalar *[]); 5838f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]); 584d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]); 5858c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArray(Mat, PetscScalar *[]); 5868f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]); 587d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]); 58821e72a00SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *); 589bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 5904099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetType(Mat, MatType); 591ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatSeqAIJKron(Mat, Mat, MatReuse, Mat *); 592388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *)); 5934099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList; 594cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJGetArray(Mat, PetscScalar *[]); 595cda14afcSprj- PETSC_EXTERN PetscErrorCode MatSeqBAIJRestoreArray(Mat, PetscScalar *[]); 5968397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJGetArray(Mat, PetscScalar *[]); 5978397e458SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]); 5988c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArray(Mat, PetscScalar *[]); 5998c778c55SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArray(Mat, PetscScalar *[]); 600d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDensePlaceArray(Mat, const PetscScalar[]); 601d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseReplaceArray(Mat, const PetscScalar[]); 602d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode MatDenseResetArray(Mat); 6038572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetArrayRead(Mat, const PetscScalar *[]); 6048572280aSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayRead(Mat, const PetscScalar *[]); 6056947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetArrayWrite(Mat, PetscScalar *[]); 6066947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWrite(Mat, PetscScalar *[]); 607014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSize(Mat, PetscInt *); 608014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSize(Mat, PetscInt); 609014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBlockSizes(Mat, PetscInt *, PetscInt *); 610014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizes(Mat, PetscInt, PetscInt); 61133d57670SJed Brown PETSC_EXTERN PetscErrorCode MatSetBlockSizesFromMats(Mat, Mat, Mat); 6120da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetVariableBlockSizes(Mat, PetscInt, PetscInt *); 6130da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt **); 6140da83c2eSBarry Smith 61586aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]); 61686aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]); 6176947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *); 6186947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *); 6196947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *); 6206947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *); 6216947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *); 6226947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *); 623a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 6245ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *); 6251620fd73SBarry Smith 626014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec); 627014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec); 628014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec); 629014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec); 630014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec); 631014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *); 632014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *); 633014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec); 634014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec); 635014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat); 636bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat); 637eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat); 638f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec); 639f5edf698SHong Zhang 640d91e6319SBarry Smith /*E 641d91e6319SBarry Smith MatDuplicateOption - Indicates if a duplicated sparse matrix should have 642d91e6319SBarry Smith its numerical values copied over or just its nonzero structure. 643d91e6319SBarry Smith 644d91e6319SBarry Smith Level: beginner 645d91e6319SBarry Smith 646af0996ceSBarry Smith Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 647d91e6319SBarry Smith 64887497f52SBarry Smith $ `MAT_DO_NOT_COPY_VALUES` - Create a matrix using the same nonzero pattern as the original matrix, 6490018da39SRichard Tran Mills $ with zeros for the numerical values. 65087497f52SBarry Smith $ `MAT_COPY_VALUES` - Create a matrix with the same nonzero pattern as the original matrix 6510018da39SRichard Tran Mills $ and with the same numerical values. 65287497f52SBarry Smith $ `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix 6530018da39SRichard Tran Mills $ and does not copy it, using zeros for the numerical values. The parent and 6540018da39SRichard Tran Mills $ child matrices will share their index (i and j) arrays, and you cannot 6550018da39SRichard Tran Mills $ insert new nonzero entries into either matrix. 6560018da39SRichard Tran Mills 65787497f52SBarry Smith Note: 65887497f52SBarry Smith Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in 65987497f52SBarry Smith this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified. 66070dcbbb9SBarry Smith 661db781477SPatrick Sanan .seealso: `MatDuplicate()` 662d91e6319SBarry Smith E*/ 6639371c9d4SSatish Balay typedef enum { 6649371c9d4SSatish Balay MAT_DO_NOT_COPY_VALUES, 6659371c9d4SSatish Balay MAT_COPY_VALUES, 6669371c9d4SSatish Balay MAT_SHARE_NONZERO_PATTERN 6679371c9d4SSatish Balay } MatDuplicateOption; 6682e8a6d31SBarry Smith 66919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *); 670014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *); 67194a9d846SBarry Smith 672014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure); 673014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer); 674014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *); 675014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *); 676014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *); 677014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *); 678014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *); 679b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *); 680b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *); 681014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *); 682014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer); 6837b80b807SBarry Smith 6841a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 6851a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 6861a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 6871a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 688d4fbbf0eSBarry Smith 689d91e6319SBarry Smith /*S 69087497f52SBarry Smith MatInfo - Context of matrix information, used with `MatGetInfo()` 691d91e6319SBarry Smith 69287497f52SBarry Smith In Fortran this is simply a double precision array of dimension `MAT_INFO_SIZE` 693d91e6319SBarry Smith 694d91e6319SBarry Smith Level: intermediate 695d91e6319SBarry Smith 696db781477SPatrick Sanan .seealso: `MatGetInfo()`, `MatInfoType` 697d91e6319SBarry Smith S*/ 6984e220ebcSLois Curfman McInnes typedef struct { 699b0a32e0cSBarry Smith PetscLogDouble block_size; /* block size */ 700b0a32e0cSBarry Smith PetscLogDouble nz_allocated, nz_used, nz_unneeded; /* number of nonzeros */ 701b0a32e0cSBarry Smith PetscLogDouble memory; /* memory allocated */ 702b0a32e0cSBarry Smith PetscLogDouble assemblies; /* number of matrix assemblies called */ 703b0a32e0cSBarry Smith PetscLogDouble mallocs; /* number of mallocs during MatSetValues() */ 704b0a32e0cSBarry Smith PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */ 705b0a32e0cSBarry Smith PetscLogDouble factor_mallocs; /* number of mallocs during factorization */ 7064e220ebcSLois Curfman McInnes } MatInfo; 7074e220ebcSLois Curfman McInnes 708d9274352SBarry Smith /*E 709d9274352SBarry Smith MatInfoType - Indicates if you want information about the local part of the matrix, 710d9274352SBarry Smith the entire parallel matrix or the maximum over all the local parts. 711d9274352SBarry Smith 712d9274352SBarry Smith Level: beginner 713d9274352SBarry Smith 714af0996ceSBarry Smith Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 715d9274352SBarry Smith 716db781477SPatrick Sanan .seealso: `MatGetInfo()`, `MatInfo` 717d9274352SBarry Smith E*/ 7189371c9d4SSatish Balay typedef enum { 7199371c9d4SSatish Balay MAT_LOCAL = 1, 7209371c9d4SSatish Balay MAT_GLOBAL_MAX = 2, 7219371c9d4SSatish Balay MAT_GLOBAL_SUM = 3 7229371c9d4SSatish Balay } MatInfoType; 723014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *); 724014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec); 725014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]); 726014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]); 727014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]); 728014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]); 729014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec); 730014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *); 7317fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *); 7327fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat); 733014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *); 734014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *); 735014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec); 736014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode); 737a52676ecSHong Zhang 738014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *); 739014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *); 740014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *); 741014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 742014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 743e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 744e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 745a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 746a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 747cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 7484222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 749447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 75086919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *); 7517b80b807SBarry Smith 752014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *); 753014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *); 754857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *); 755857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *); 756857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *); 757857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *); 758857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *); 759857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *); 760857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *); 761014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat); 7621b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat); 763014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 764014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec); 765014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 766014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 767014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 768014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec); 7697b80b807SBarry Smith 770014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *); 771014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *); 772014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *); 773014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **); 774014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *); 775014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **); 776566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *); 7775ef9f2a5SBarry Smith 7787dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 779d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatrices() (since version 3.8)") static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 780d71ae5a4SJacob Faibussowitsch { 7819371c9d4SSatish Balay return MatCreateSubMatrices(mat, n, irow, icol, scall, submat); 7829371c9d4SSatish Balay } 7837dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 784d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatricesMPI() (since version 3.8)") static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 785d71ae5a4SJacob Faibussowitsch { 7869371c9d4SSatish Balay return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat); 7879371c9d4SSatish Balay } 788014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]); 789df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]); 7907dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *); 791d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatrix() (since version 3.8)") static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat) 792d71ae5a4SJacob Faibussowitsch { 7939371c9d4SSatish Balay return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat); 7949371c9d4SSatish Balay } 795014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *); 796014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *); 797014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *); 798014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *); 7997b80b807SBarry Smith 800014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *); 801014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *); 802014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat); 803014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *); 8048a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *); 805014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *); 806ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *); 807f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *); 808014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *); 809014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]); 8108efafbd8SBarry Smith 811014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt); 812aa1e27eaSFande Kong PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov); 813d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool); 8147b80b807SBarry Smith 815014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 81622440eb1SKris Buschelman 8177bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 8182df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 8197bab7c10SHong Zhang 820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *); 821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *); 82222440eb1SKris Buschelman 823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *); 825bc011b1eSHong Zhang 826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure); 827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure); 8281c741599SHong Zhang 829014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar); 830014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar); 8317b80b807SBarry Smith 832014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping); 833014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 834a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *); 83581fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout); 836014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 837014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 838014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 839014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 840e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 841014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 842014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 843052efed2SBarry Smith 844014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt); 845014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *); 84690f02eecSBarry Smith 847014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec); 848014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec); 849014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec); 85030b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *); 85130b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *); 85230b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *); 8532a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *); 854d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateVecs() (since version 3.6)") static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y) 855d71ae5a4SJacob Faibussowitsch { 8569371c9d4SSatish Balay return MatCreateVecs(mat, x, y); 8579371c9d4SSatish Balay } 85853cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *); 859014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *); 860014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *); 8613a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *); 8629c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *); 863bd481603SBarry Smith 864bd481603SBarry Smith /*MC 8651620fd73SBarry Smith MatSetValue - Set a single entry into a matrix. 8661620fd73SBarry Smith 8671620fd73SBarry Smith Not collective 8681620fd73SBarry Smith 869a9834a7dSSatish Balay Synopsis: 870a9834a7dSSatish Balay #include <petscmat.h> 871a9834a7dSSatish Balay PetscErrorCode MatSetValue(Mat m,PetscInt row,PetscInt col,PetscScalar value,InsertMode mode) 872a9834a7dSSatish Balay 8731620fd73SBarry Smith Input Parameters: 8741620fd73SBarry Smith + m - the matrix 8751620fd73SBarry Smith . row - the row location of the entry 8761620fd73SBarry Smith . col - the column location of the entry 8771620fd73SBarry Smith . value - the value to insert 87887497f52SBarry Smith - mode - either `INSERT_VALUES` or `ADD_VALUES` 8791620fd73SBarry Smith 8801620fd73SBarry Smith Notes: 88187497f52SBarry Smith For efficiency one should use `MatSetValues()` and set several values simultaneously. 8821620fd73SBarry Smith 8831620fd73SBarry Smith Level: beginner 8841620fd73SBarry Smith 885db781477SPatrick Sanan .seealso: `MatGetValue()`, `MatSetValues()`, `MatSetValueLocal()`, `MatSetValuesLocal()` 8861620fd73SBarry Smith M*/ 887d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValue(Mat v, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 888d71ae5a4SJacob Faibussowitsch { 8899371c9d4SSatish Balay return MatSetValues(v, 1, &i, 1, &j, &va, mode); 8909371c9d4SSatish Balay } 8911620fd73SBarry Smith 892e5e5a7b5SPatrick Sanan /*@C 893e5e5a7b5SPatrick Sanan MatGetValue - Gets a single value from a matrix 8941620fd73SBarry Smith 895e5e5a7b5SPatrick Sanan Not Collective; can only return a value owned by the given process 896e5e5a7b5SPatrick Sanan 897e5e5a7b5SPatrick Sanan Input Parameters: 898e5e5a7b5SPatrick Sanan + mat - the matrix 899e5e5a7b5SPatrick Sanan . row - the row location of the entry 900e5e5a7b5SPatrick Sanan - col - the column location of the entry 901e5e5a7b5SPatrick Sanan 902e5e5a7b5SPatrick Sanan Output Parameter: 903e5e5a7b5SPatrick Sanan . va - the value 904e5e5a7b5SPatrick Sanan 905e5e5a7b5SPatrick Sanan Notes: 90687497f52SBarry Smith For efficiency one should use `MatGetValues()` and get several values simultaneously. 907e5e5a7b5SPatrick Sanan 90887497f52SBarry Smith See notes for `MatGetValues()`. 909e5e5a7b5SPatrick Sanan 910e5e5a7b5SPatrick Sanan Level: advanced 911e5e5a7b5SPatrick Sanan 912db781477SPatrick Sanan .seealso: `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()` 913e5e5a7b5SPatrick Sanan @*/ 914d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va) 915d71ae5a4SJacob Faibussowitsch { 9169371c9d4SSatish Balay return MatGetValues(mat, 1, &row, 1, &col, va); 9179371c9d4SSatish Balay } 918e5e5a7b5SPatrick Sanan 919e5e5a7b5SPatrick Sanan /*MC 920e5e5a7b5SPatrick Sanan MatSetValueLocal - Inserts or adds a single value into a matrix, 921e5e5a7b5SPatrick Sanan using a local numbering of the nodes. 922e5e5a7b5SPatrick Sanan 923e5e5a7b5SPatrick Sanan Not Collective 924e5e5a7b5SPatrick Sanan 925e5e5a7b5SPatrick Sanan Input Parameters: 926e5e5a7b5SPatrick Sanan + m - the matrix 927e5e5a7b5SPatrick Sanan . row - the row location of the entry 928e5e5a7b5SPatrick Sanan . col - the column location of the entry 929e5e5a7b5SPatrick Sanan . value - the value to insert 93087497f52SBarry Smith - mode - either `INSERT_VALUES` or `ADD_VALUES` 931e5e5a7b5SPatrick Sanan 932e5e5a7b5SPatrick Sanan Notes: 93387497f52SBarry Smith For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously. 934e5e5a7b5SPatrick Sanan 93587497f52SBarry Smith See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used. 936e5e5a7b5SPatrick Sanan 937e5e5a7b5SPatrick Sanan Level: intermediate 938e5e5a7b5SPatrick Sanan 939db781477SPatrick Sanan .seealso: `MatSetValue()`, `MatSetValuesLocal()` 940e5e5a7b5SPatrick Sanan M*/ 941d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValueLocal(Mat v, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 942d71ae5a4SJacob Faibussowitsch { 9439371c9d4SSatish Balay return MatSetValuesLocal(v, 1, &i, 1, &j, &va, mode); 9449371c9d4SSatish Balay } 9451620fd73SBarry Smith 9461620fd73SBarry Smith /*MC 947d0609cedSBarry Smith MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per 948bd481603SBarry Smith row in a matrix providing the data that one can use to correctly preallocate the matrix. 949bd481603SBarry Smith 950bd481603SBarry Smith Synopsis: 951aaa7dc30SBarry Smith #include <petscmat.h> 952d0609cedSBarry Smith PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz) 953bd481603SBarry Smith 954d083f849SBarry Smith Collective 955bd481603SBarry Smith 956bd481603SBarry Smith Input Parameters: 957bd481603SBarry Smith + comm - the communicator that will share the eventually allocated matrix 958859fcb39SBarry Smith . nrows - the number of LOCAL rows in the matrix 959859fcb39SBarry Smith - ncols - the number of LOCAL columns in the matrix 960bd481603SBarry Smith 961bd481603SBarry Smith Output Parameters: 962bd481603SBarry Smith + dnz - the array that will be passed to the matrix preallocation routines 963a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 964bd481603SBarry Smith 965bd481603SBarry Smith Level: intermediate 966bd481603SBarry Smith 967bd481603SBarry Smith Notes: 968d0609cedSBarry Smith This is a macro that handles its own error checking, it does not return an error code. 969d0609cedSBarry Smith 970a7f22e61SSatish Balay See Users-Manual: ch_performance for more details. 971bd481603SBarry Smith 9721d73ed98SBarry Smith Do not malloc or free dnz and onz, that is handled internally by these routines 973bd481603SBarry Smith 974d0609cedSBarry Smith Developer Notes: 9751620fd73SBarry Smith This is a MACRO not a function because it has a leading { that is closed by PetscPreallocateFinalize(). 9761620fd73SBarry Smith 977db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 978db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 979bd481603SBarry Smith M*/ 9809371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \ 9819371c9d4SSatish Balay do { \ 9825f80ce2aSJacob Faibussowitsch PetscInt __nrows = (nrows), __ncols = (ncols), __rstart, __start, __end = 0; \ 9839566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \ 9849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \ 9859371c9d4SSatish Balay __start = __end - __ncols; \ 9869371c9d4SSatish Balay (void)__start; \ 9879566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \ 9885f80ce2aSJacob Faibussowitsch __rstart -= __nrows 9897c922b88SBarry Smith 990d0609cedSBarry Smith #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO("GCC warning \"Use MatPreallocateBegin() (since version 3.18)\"") MatPreallocateBegin(__VA_ARGS__) 991d0609cedSBarry Smith 992bd481603SBarry Smith /*MC 993bd481603SBarry Smith MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be 994bd481603SBarry Smith inserted using a local number of the rows and columns 995bd481603SBarry Smith 996bd481603SBarry Smith Synopsis: 997aaa7dc30SBarry Smith #include <petscmat.h> 998c1ac3661SBarry Smith PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 999bd481603SBarry Smith 1000bd481603SBarry Smith Not Collective 1001bd481603SBarry Smith 1002bd481603SBarry Smith Input Parameters: 1003784ac674SJed Brown + map - the row mapping from local numbering to global numbering 1004bd481603SBarry Smith . nrows - the number of rows indicated 10051d73ed98SBarry Smith . rows - the indices of the rows 1006784ac674SJed Brown . cmap - the column mapping from local to global numbering 1007bd481603SBarry Smith . ncols - the number of columns in the matrix 1008bd481603SBarry Smith . cols - the columns indicated 1009bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1010a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1011bd481603SBarry Smith 1012bd481603SBarry Smith Level: intermediate 1013bd481603SBarry Smith 1014bd481603SBarry Smith Notes: 1015a7f22e61SSatish Balay See Users-Manual: ch_performance for more details. 1016bd481603SBarry Smith 10171d73ed98SBarry Smith Do not malloc or free dnz and onz, that is handled internally by these routines 1018bd481603SBarry Smith 1019db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1020db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()` 1021bd481603SBarry Smith M*/ 102294bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 10239371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1024c4f061fbSSatish Balay 1025bd481603SBarry Smith /*MC 1026c1154cd5SBarry Smith MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1027c1154cd5SBarry Smith inserted using a local number of the rows and columns. This version removes any duplicate columns in cols 1028c1154cd5SBarry Smith 1029c1154cd5SBarry Smith Synopsis: 1030c1154cd5SBarry Smith #include <petscmat.h> 1031c1154cd5SBarry Smith PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1032c1154cd5SBarry Smith 1033c1154cd5SBarry Smith Not Collective 1034c1154cd5SBarry Smith 1035c1154cd5SBarry Smith Input Parameters: 1036c1154cd5SBarry Smith + map - the row mapping from local numbering to global numbering 1037c1154cd5SBarry Smith . nrows - the number of rows indicated 1038c1154cd5SBarry Smith . rows - the indices of the rows (these values are mapped to the global values) 1039c1154cd5SBarry Smith . cmap - the column mapping from local to global numbering 1040c1154cd5SBarry Smith . ncols - the number of columns in the matrix (this value will be changed if duplicate columns are found) 1041c1154cd5SBarry Smith . cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed) 1042c1154cd5SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1043a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1044c1154cd5SBarry Smith 1045c1154cd5SBarry Smith Level: intermediate 1046c1154cd5SBarry Smith 1047c1154cd5SBarry Smith Notes: 1048c1154cd5SBarry Smith See Users-Manual: ch_performance for more details. 1049c1154cd5SBarry Smith 1050c1154cd5SBarry Smith Do not malloc or free dnz and onz, that is handled internally by these routines 1051c1154cd5SBarry Smith 1052db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1053db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1054c1154cd5SBarry Smith M*/ 105594bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 10569371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1057c1154cd5SBarry Smith 1058c1154cd5SBarry Smith /*MC 1059d6e23781SBarry Smith MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1060bd481603SBarry Smith inserted using a local number of the rows and columns 1061bd481603SBarry Smith 1062bd481603SBarry Smith Synopsis: 1063aaa7dc30SBarry Smith #include <petscmat.h> 1064d6e23781SBarry Smith PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1065d6e23781SBarry Smith 1066d6e23781SBarry Smith Not Collective 1067d6e23781SBarry Smith 1068d6e23781SBarry Smith Input Parameters: 1069d6e23781SBarry Smith + map - the row mapping from local numbering to global numbering 1070d6e23781SBarry Smith . nrows - the number of rows indicated 1071d6e23781SBarry Smith . rows - the indices of the rows 1072d6e23781SBarry Smith . cmap - the column mapping from local to global numbering 1073d6e23781SBarry Smith . ncols - the number of columns in the matrix 1074d6e23781SBarry Smith . cols - the columns indicated 1075d6e23781SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1076a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1077d6e23781SBarry Smith 1078d6e23781SBarry Smith Level: intermediate 1079d6e23781SBarry Smith 1080d6e23781SBarry Smith Notes: 1081d6e23781SBarry Smith See Users-Manual: ch_performance for more details. 1082d6e23781SBarry Smith 1083d6e23781SBarry Smith Do not malloc or free dnz and onz, that is handled internally by these routines 1084d6e23781SBarry Smith 1085db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1086db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()` 1087d6e23781SBarry Smith M*/ 108894bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 10899371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1090d6e23781SBarry Smith 1091d6e23781SBarry Smith /*MC 1092d6e23781SBarry Smith MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1093d6e23781SBarry Smith inserted using a local number of the rows and columns 1094d6e23781SBarry Smith 1095d6e23781SBarry Smith Synopsis: 1096d6e23781SBarry Smith #include <petscmat.h> 1097d6e23781SBarry Smith PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1098bd481603SBarry Smith 1099bd481603SBarry Smith Not Collective 1100bd481603SBarry Smith 1101bd481603SBarry Smith Input Parameters: 1102bd481603SBarry Smith + map - the mapping between local numbering and global numbering 1103bd481603SBarry Smith . nrows - the number of rows indicated 11041d73ed98SBarry Smith . rows - the indices of the rows 1105bd481603SBarry Smith . ncols - the number of columns in the matrix 1106bd481603SBarry Smith . cols - the columns indicated 1107bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1108a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1109bd481603SBarry Smith 1110bd481603SBarry Smith Level: intermediate 1111bd481603SBarry Smith 1112bd481603SBarry Smith Notes: 1113a7f22e61SSatish Balay See Users-Manual: ch_performance for more details. 1114bd481603SBarry Smith 1115bd481603SBarry Smith Do not malloc or free dnz and onz that is handled internally by these routines 1116bd481603SBarry Smith 1117db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()` 1118db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1119bd481603SBarry Smith M*/ 112094bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \ 11219371c9d4SSatish Balay PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));) 1122e83a5d19SLisandro Dalcin 1123bd481603SBarry Smith /*MC 1124bd481603SBarry Smith MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1125bd481603SBarry Smith inserted using a local number of the rows and columns 1126bd481603SBarry Smith 1127bd481603SBarry Smith Synopsis: 1128aaa7dc30SBarry Smith #include <petscmat.h> 1129c1ac3661SBarry Smith PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1130bd481603SBarry Smith 1131bd481603SBarry Smith Not Collective 1132bd481603SBarry Smith 1133bd481603SBarry Smith Input Parameters: 113464075487SBarry Smith + row - the row 1135bd481603SBarry Smith . ncols - the number of columns in the matrix 1136a50f8bf6SHong Zhang - cols - the columns indicated 1137a50f8bf6SHong Zhang 1138a50f8bf6SHong Zhang Output Parameters: 1139a50f8bf6SHong Zhang + dnz - the array that will be passed to the matrix preallocation routines 1140a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1141bd481603SBarry Smith 1142bd481603SBarry Smith Level: intermediate 1143bd481603SBarry Smith 1144bd481603SBarry Smith Notes: 1145a7f22e61SSatish Balay See Users-Manual: ch_performance for more details. 1146bd481603SBarry Smith 1147bd481603SBarry Smith Do not malloc or free dnz and onz that is handled internally by these routines 1148bd481603SBarry Smith 1149d0609cedSBarry Smith This is a MACRO not a function because it uses variables declared in MatPreallocateBegin(). 11501620fd73SBarry Smith 1151db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1152db781477SPatrick Sanan `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1153bd481603SBarry Smith M*/ 11549371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \ 11559371c9d4SSatish Balay PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \ 115664075487SBarry Smith if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \ 1157a6042fd4SStefano Zampini else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 11589371c9d4SSatish Balay }) 11597c922b88SBarry Smith 1160bd481603SBarry Smith /*MC 1161d6e23781SBarry Smith MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1162bd481603SBarry Smith inserted using a local number of the rows and columns 1163bd481603SBarry Smith 1164bd481603SBarry Smith Synopsis: 1165aaa7dc30SBarry Smith #include <petscmat.h> 1166d6e23781SBarry Smith PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1167bd481603SBarry Smith 1168bd481603SBarry Smith Not Collective 1169bd481603SBarry Smith 1170bd481603SBarry Smith Input Parameters: 1171bd481603SBarry Smith + nrows - the number of rows indicated 11721d73ed98SBarry Smith . rows - the indices of the rows 1173bd481603SBarry Smith . ncols - the number of columns in the matrix 1174bd481603SBarry Smith . cols - the columns indicated 1175bd481603SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1176a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1177bd481603SBarry Smith 1178bd481603SBarry Smith Level: intermediate 1179bd481603SBarry Smith 1180bd481603SBarry Smith Notes: 1181a7f22e61SSatish Balay See Users-Manual: ch_performance for more details. 1182bd481603SBarry Smith 1183bd481603SBarry Smith Do not malloc or free dnz and onz that is handled internally by these routines 1184bd481603SBarry Smith 1185d0609cedSBarry Smith This is a MACRO not a function because it uses variables declared in MatPreallocateBegin(). 11861620fd73SBarry Smith 1187db781477SPatrick Sanan .seealso: `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`, 1188db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1189bd481603SBarry Smith M*/ 119094bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \ 11919371c9d4SSatish Balay PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \ 1192d3d32019SBarry Smith if (cols[__i] >= __end) onz[row - __rstart]++; \ 1193a6042fd4SStefano Zampini else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 11949371c9d4SSatish Balay }) 1195d3d32019SBarry Smith 1196bd481603SBarry Smith /*MC 1197a6042fd4SStefano Zampini MatPreallocateLocation - An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists 119816371a99SBarry Smith 119916371a99SBarry Smith Synopsis: 1200aaa7dc30SBarry Smith #include <petscmat.h> 120116371a99SBarry Smith PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz) 120216371a99SBarry Smith 120316371a99SBarry Smith Not Collective 120416371a99SBarry Smith 120516371a99SBarry Smith Input Parameters: 1206a2b725a8SWilliam Gropp + A - matrix 120716371a99SBarry Smith . row - row where values exist (must be local to this process) 120816371a99SBarry Smith . ncols - number of columns 120916371a99SBarry Smith . cols - columns with nonzeros 121016371a99SBarry Smith . dnz - the array that will be passed to the matrix preallocation routines 1211a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 121216371a99SBarry Smith 121316371a99SBarry Smith Level: intermediate 121416371a99SBarry Smith 121516371a99SBarry Smith Notes: 1216a7f22e61SSatish Balay See Users-Manual: ch_performance for more details. 121716371a99SBarry Smith 121816371a99SBarry Smith Do not malloc or free dnz and onz that is handled internally by these routines 121916371a99SBarry Smith 122016371a99SBarry Smith This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines. 122116371a99SBarry Smith 1222db781477SPatrick Sanan .seealso: `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1223db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 122416371a99SBarry Smith M*/ 1225d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz)) 122616371a99SBarry Smith 122716371a99SBarry Smith /*MC 1228d0609cedSBarry Smith MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per 1229bd481603SBarry Smith row in a matrix providing the data that one can use to correctly preallocate the matrix. 1230bd481603SBarry Smith 1231bd481603SBarry Smith Synopsis: 1232aaa7dc30SBarry Smith #include <petscmat.h> 1233d0609cedSBarry Smith PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz) 1234bd481603SBarry Smith 1235d083f849SBarry Smith Collective 1236bd481603SBarry Smith 1237bd481603SBarry Smith Input Parameters: 123816371a99SBarry Smith + dnz - the array that was be passed to the matrix preallocation routines 1239a6042fd4SStefano Zampini - onz - the other array passed to the matrix preallocation routines 1240bd481603SBarry Smith 1241bd481603SBarry Smith Level: intermediate 1242bd481603SBarry Smith 1243bd481603SBarry Smith Notes: 1244d0609cedSBarry Smith This is a macro that handles its own error checking, it does not return an error code. 1245d0609cedSBarry Smith 1246a7f22e61SSatish Balay See Users-Manual: ch_performance for more details. 1247bd481603SBarry Smith 1248d0609cedSBarry Smith Do not malloc or free dnz and onz, that is handled internally by these routines 1249bd481603SBarry Smith 1250d0609cedSBarry Smith Developer Notes: 1251d0609cedSBarry Smith This is a MACRO not a function because it closes the { started in MatPreallocateBegin(). 12521620fd73SBarry Smith 1253db781477SPatrick Sanan .seealso: `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1254db781477SPatrick Sanan `MatPreallocateSymmetricSetLocalBlock()` 1255bd481603SBarry Smith M*/ 12569371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \ 12579371c9d4SSatish Balay PetscCall(PetscFree2(dnz, onz)); \ 12589371c9d4SSatish Balay } \ 12599371c9d4SSatish Balay while (0) 1260d0609cedSBarry Smith 1261d0609cedSBarry Smith #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO("GCC warning \"Use MatPreallocateEnd() (since version 3.18)\"") MatPreallocateEnd(__VA_ARGS__) 12627c922b88SBarry Smith 12637b80b807SBarry Smith /* Routines unique to particular data structures */ 1264014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *); 1265698d4c6aSKris Buschelman 1266014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *); 1267014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *); 1268698d4c6aSKris Buschelman 1269014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]); 1270014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]); 1271014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1272014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1273014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1274014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool); 12757b80b807SBarry Smith 1276a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4 1277a96a251dSBarry Smith 1278014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1279014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1280014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]); 128119b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt); 1282273d9f13SBarry Smith 1283014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1284014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1285014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1286014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1287014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1288014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1289014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1290014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]); 1291b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *); 1292252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *); 1293014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]); 1294014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]); 12959230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 12969230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 1297014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *); 1298273d9f13SBarry Smith 129949a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *); 1300ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt); 1301d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatDenseSetLDA() (since version 3.14)") static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda) 1302d71ae5a4SJacob Faibussowitsch { 13039371c9d4SSatish Balay return MatDenseSetLDA(A, lda); 13049371c9d4SSatish Balay } 1305014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *); 13061b807ce4Svictorle 1307621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1308621e819fSSatish Balay 1309014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat); 1310014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat); 13112e8a6d31SBarry Smith 1312014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *); 13137cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *); 13147b80b807SBarry Smith /* 13157b80b807SBarry Smith These routines are not usually accessed directly, rather solving is 131694b7f48cSBarry Smith done through the KSP and PC interfaces. 13177b80b807SBarry Smith */ 13187b80b807SBarry Smith 131976bdecfbSBarry Smith /*J 13208f6c3df8SBarry Smith MatOrderingType - String with the name of a PETSc matrix ordering 1321d9274352SBarry Smith 1322d9274352SBarry Smith Level: beginner 1323d9274352SBarry Smith 13242c7c0729SBarry Smith Notes: 132587497f52SBarry Smith If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and utilizes one built into the factorization package 13262c7c0729SBarry Smith 1327db781477SPatrick Sanan .seealso: `MatGetOrdering()` 132876bdecfbSBarry Smith J*/ 132919fd82e9SBarry Smith typedef const char *MatOrderingType; 13302692d6eeSBarry Smith #define MATORDERINGNATURAL "natural" 13312692d6eeSBarry Smith #define MATORDERINGND "nd" 13322692d6eeSBarry Smith #define MATORDERING1WD "1wd" 13332692d6eeSBarry Smith #define MATORDERINGRCM "rcm" 13342692d6eeSBarry Smith #define MATORDERINGQMD "qmd" 13352692d6eeSBarry Smith #define MATORDERINGROWLENGTH "rowlength" 1336510184a7SJed Brown #define MATORDERINGWBM "wbm" 1337fc1bef75SJed Brown #define MATORDERINGSPECTRAL "spectral" 1338312e372aSBarry Smith #define MATORDERINGAMD "amd" /* only works if UMFPACK is installed with PETSc */ 1339048412efSPablo Brubeck #define MATORDERINGMETISND "metisnd" /* only works if METIS is installed with PETSc */ 13409bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */ 13412c7c0729SBarry Smith #define MATORDERINGEXTERNAL "external" /* uses an ordering type internal to the factorization package */ 1342b12f92e5SBarry Smith 134319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrdering(Mat, MatOrderingType, IS *, IS *); 1344140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode MatGetOrderingList(PetscFunctionList *); 1345bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *)); 1346140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList; 1347d4fbbf0eSBarry Smith 1348013e2dc7SBarry Smith #include "petscmatcoarsen.h" 1349013e2dc7SBarry Smith 1350014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS); 1351fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *); 1352a2ce50c7SBarry Smith 13534ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *); 13544ac6704cSBarry Smith 1355d91e6319SBarry Smith /*S 1356ec5066bdSBarry Smith MatFactorShiftType - Numeric Shift for factorizations 1357d90ac83dSHong Zhang 1358d90ac83dSHong Zhang Level: beginner 1359d90ac83dSHong Zhang 1360db781477SPatrick Sanan .seealso: `MatGetFactor()` 1361d90ac83dSHong Zhang S*/ 13629371c9d4SSatish Balay typedef enum { 13639371c9d4SSatish Balay MAT_SHIFT_NONE, 13649371c9d4SSatish Balay MAT_SHIFT_NONZERO, 13659371c9d4SSatish Balay MAT_SHIFT_POSITIVE_DEFINITE, 13669371c9d4SSatish Balay MAT_SHIFT_INBLOCKS 13679371c9d4SSatish Balay } MatFactorShiftType; 13686a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[]; 13695e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[]; 1370d90ac83dSHong Zhang 1371d90ac83dSHong Zhang /*S 1372ec5066bdSBarry Smith MatFactorError - indicates what type of error was generated in a matrix factorization 13739aa7eafdSHong Zhang 13749aa7eafdSHong Zhang Level: beginner 13759aa7eafdSHong Zhang 137687497f52SBarry Smith Developer Note: 137795452b02SPatrick Sanan Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 137800e125f8SBarry Smith 1379db781477SPatrick Sanan .seealso: `MatGetFactor()` 13809aa7eafdSHong Zhang S*/ 13819371c9d4SSatish Balay typedef enum { 13829371c9d4SSatish Balay MAT_FACTOR_NOERROR, 13839371c9d4SSatish Balay MAT_FACTOR_STRUCT_ZEROPIVOT, 13849371c9d4SSatish Balay MAT_FACTOR_NUMERIC_ZEROPIVOT, 13859371c9d4SSatish Balay MAT_FACTOR_OUTMEMORY, 13869371c9d4SSatish Balay MAT_FACTOR_OTHER 13879371c9d4SSatish Balay } MatFactorError; 13889aa7eafdSHong Zhang 138900e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *); 1390b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat); 13917b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *); 139200e125f8SBarry Smith 13939aa7eafdSHong Zhang /*S 1394422a814eSBarry Smith MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization 1395b00f7748SHong Zhang 139687497f52SBarry Smith In Fortran these are simply double precision arrays of size `MAT_FACTORINFO_SIZE`, that is use 139761cad860SBarry Smith $ MatFactorInfo info(MAT_FACTORINFO_SIZE) 1398b00f7748SHong Zhang 139995452b02SPatrick Sanan Notes: 140087497f52SBarry Smith These are not usually directly used by users, instead use `PC` type of `PCLU`, `PCILU`, `PCCHOLESKY` or `PCICC`. 1401b00f7748SHong Zhang 140287497f52SBarry Smith You can use `MatFactorInfoInitialize()` to set default values. 140361cad860SBarry Smith 1404b00f7748SHong Zhang Level: developer 1405b00f7748SHong Zhang 1406db781477SPatrick Sanan .seealso: `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, `MatICCFactorSymbolic()`, `MatICCFactor()`, 1407db781477SPatrick Sanan `MatFactorInfoInitialize()` 1408b00f7748SHong Zhang 1409b00f7748SHong Zhang S*/ 1410b00f7748SHong Zhang typedef struct { 141115e8a5b3SHong Zhang PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */ 141285317021SBarry Smith PetscReal usedt; 141315e8a5b3SHong Zhang PetscReal dt; /* drop tolerance */ 1414b00f7748SHong Zhang PetscReal dtcol; /* tolerance for pivoting */ 141515e8a5b3SHong Zhang PetscReal dtcount; /* maximum nonzeros to be allowed per row */ 141667e28bfeSBarry Smith PetscReal fill; /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */ 1417348344bbSBarry Smith PetscReal levels; /* ICC/ILU(levels) */ 1418bcd9e38bSBarry Smith PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 1419bcd9e38bSBarry Smith factorization may be faster if do not pivot */ 142015e8a5b3SHong Zhang PetscReal zeropivot; /* pivot is called zero if less than this */ 1421f4db908eSBarry Smith PetscReal shifttype; /* type of shift added to matrix factor to prevent zero pivots */ 1422f4db908eSBarry Smith PetscReal shiftamount; /* how large the shift is */ 142315e8a5b3SHong Zhang } MatFactorInfo; 1424ffa6d0a5SLois Curfman McInnes 1425014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *); 14269a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *); 14279a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 14289a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *); 14299a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *); 14309a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *); 14319a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 14329a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 14339a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 14349a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *); 14359a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *); 14363f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *); 14373f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 14383f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *); 1439014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *); 1440014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec); 1441014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec); 1442014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec); 1443014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec); 1444014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec); 1445014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec); 1446014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs); 14477c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat); 14487c2f51b8SStefano Zampini 14499371c9d4SSatish Balay typedef enum { 14509371c9d4SSatish Balay MAT_FACTOR_SCHUR_UNFACTORED, 14519371c9d4SSatish Balay MAT_FACTOR_SCHUR_FACTORED, 14529371c9d4SSatish Balay MAT_FACTOR_SCHUR_INVERTED 14539371c9d4SSatish Balay } MatFactorSchurStatus; 14548e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS); 14557c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 14567c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus); 14575a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat); 14587c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 14595a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec); 14605a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec); 14616dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat); 1462bb5a7306SBarry Smith 14638a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat); 1464d91e6319SBarry Smith /*E 1465d91e6319SBarry Smith MatSORType - What type of (S)SOR to perform 1466bb1eb677SSatish Balay 1467d91e6319SBarry Smith Level: beginner 1468d91e6319SBarry Smith 1469d9274352SBarry Smith May be bitwise ORd together 1470d9274352SBarry Smith 147187497f52SBarry Smith Developer Notes: 1472af0996ceSBarry Smith Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 1473d91e6319SBarry Smith 147487497f52SBarry Smith `MatSORType` may be bitwise ORd together, so do not change the numerical values 14754e7234bfSBarry Smith 1476db781477SPatrick Sanan .seealso: `MatSOR()` 1477d91e6319SBarry Smith E*/ 14789371c9d4SSatish Balay typedef enum { 14799371c9d4SSatish Balay SOR_FORWARD_SWEEP = 1, 14809371c9d4SSatish Balay SOR_BACKWARD_SWEEP = 2, 14819371c9d4SSatish Balay SOR_SYMMETRIC_SWEEP = 3, 14829371c9d4SSatish Balay SOR_LOCAL_FORWARD_SWEEP = 4, 14839371c9d4SSatish Balay SOR_LOCAL_BACKWARD_SWEEP = 8, 14849371c9d4SSatish Balay SOR_LOCAL_SYMMETRIC_SWEEP = 12, 14859371c9d4SSatish Balay SOR_ZERO_INITIAL_GUESS = 16, 14869371c9d4SSatish Balay SOR_EISENSTAT = 32, 14879371c9d4SSatish Balay SOR_APPLY_UPPER = 64, 14889371c9d4SSatish Balay SOR_APPLY_LOWER = 128 14899371c9d4SSatish Balay } MatSORType; 1490014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec); 14918ed539a5SBarry Smith 14927086a01eSPeter Brune /*S 14937086a01eSPeter Brune MatColoring - Object for managing the coloring of matrices. 14947086a01eSPeter Brune 14957086a01eSPeter Brune Level: beginner 14967086a01eSPeter Brune 1497ec5066bdSBarry Smith Notes: 149887497f52SBarry Smith Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 149987497f52SBarry Smith matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors). 1500ec5066bdSBarry Smith 150187497f52SBarry Smith Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This 1502ec5066bdSBarry Smith same object can also be used to efficiently convert data created by Automatic Differentation tools to PETSc sparse matrices. 1503ec5066bdSBarry Smith 1504db781477SPatrick Sanan .seealso: `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`, `MatOrdering`, `MatPartitioning`, `MatColoringType` 15057086a01eSPeter Brune S*/ 1506d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring; 1507d4db15c4SBarry Smith 1508d4db15c4SBarry Smith /*J 1509d4db15c4SBarry Smith MatColoringType - String with the name of a PETSc matrix coloring 1510d9274352SBarry Smith 1511d9274352SBarry Smith Level: beginner 1512d9274352SBarry Smith 1513db781477SPatrick Sanan .seealso: `MatColoringSetType()`, `MatColoring` 151476bdecfbSBarry Smith J*/ 151519fd82e9SBarry Smith typedef const char *MatColoringType; 15165567d71aSPeter Brune #define MATCOLORINGJP "jp" 1517b9acb617SPeter Brune #define MATCOLORINGPOWER "power" 15182692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural" 15192692d6eeSBarry Smith #define MATCOLORINGSL "sl" 15202692d6eeSBarry Smith #define MATCOLORINGLF "lf" 15212692d6eeSBarry Smith #define MATCOLORINGID "id" 15228121bdceSPeter Brune #define MATCOLORINGGREEDY "greedy" 1523b12f92e5SBarry Smith 15248ac6da0aSPeter Brune /*E 15258ac6da0aSPeter Brune MatColoringWeightType - Type of weight scheme 15268ac6da0aSPeter Brune 15278ac6da0aSPeter Brune Not Collective 15288ac6da0aSPeter Brune 152987497f52SBarry Smith + `MAT_COLORING_RANDOM` - Random weights 153087497f52SBarry Smith . `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering. 153187497f52SBarry Smith - `MAT_COLORING_LF` - Last-first weighting. 15328ac6da0aSPeter Brune 15338ac6da0aSPeter Brune Level: intermediate 15348ac6da0aSPeter Brune 153587497f52SBarry Smith Developer Note: 1536af0996ceSBarry Smith Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 1537ec5066bdSBarry Smith 1538db781477SPatrick Sanan .seealso: `MatColoring`, `MatColoringCreate()` 15398ac6da0aSPeter Brune E*/ 15409371c9d4SSatish Balay typedef enum { 15419371c9d4SSatish Balay MAT_COLORING_WEIGHT_RANDOM, 15429371c9d4SSatish Balay MAT_COLORING_WEIGHT_LEXICAL, 15439371c9d4SSatish Balay MAT_COLORING_WEIGHT_LF, 15449371c9d4SSatish Balay MAT_COLORING_WEIGHT_SL 15459371c9d4SSatish Balay } MatColoringWeightType; 15468ac6da0aSPeter Brune 1547335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *); 1548d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *); 1549335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *); 1550335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer); 1551335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType); 1552335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring); 1553335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt); 1554335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *); 1555335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt); 1556335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *); 1557335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *); 1558335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring)); 1559014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *); 15608ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType); 1561c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *); 15628ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm); 1563bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring); 1564d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatColoringTest() (since version 3.10)") static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring) 1565d71ae5a4SJacob Faibussowitsch { 15669371c9d4SSatish Balay return MatColoringTest(matcoloring, iscoloring); 15679371c9d4SSatish Balay } 1568bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring); 1569639f9d9dSBarry Smith 1570d9274352SBarry Smith /*S 157187497f52SBarry Smith MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring 1572639f9d9dSBarry Smith 1573d9274352SBarry Smith Level: beginner 1574d9274352SBarry Smith 1575ec5066bdSBarry Smith Notes: 157687497f52SBarry Smith This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()` 1577ec5066bdSBarry Smith 157887497f52SBarry Smith .seealso: `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()` 1579d9274352SBarry Smith S*/ 1580e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring; 1581639f9d9dSBarry Smith 1582014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *); 1583014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *); 1584014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer); 1585014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *); 1586014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **); 1587014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal); 1588014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring); 1589d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *); 1590014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec); 1591edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]); 1592f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring); 1593f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt); 1594bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *); 1595b1683b59SHong Zhang 1596b1683b59SHong Zhang /*S 1597b9af6bddSHong Zhang MatTransposeColoring - Object for computing a sparse matrix product C=A*B^T via coloring 1598b1683b59SHong Zhang 1599b1683b59SHong Zhang Level: beginner 1600b1683b59SHong Zhang 1601db781477SPatrick Sanan .seealso: `MatTransposeColoringCreate()` 1602b1683b59SHong Zhang S*/ 1603b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring; 1604b1683b59SHong Zhang 1605014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *); 1606014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat); 1607014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat); 1608014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *); 1609b1683b59SHong Zhang 1610d9274352SBarry Smith /*S 1611d9274352SBarry Smith MatPartitioning - Object for managing the partitioning of a matrix or graph 1612d9274352SBarry Smith 1613d9274352SBarry Smith Level: beginner 1614d9274352SBarry Smith 161587497f52SBarry Smith Note: 161687497f52SBarry Smith There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations 161787497f52SBarry Smith via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`) 1618ec5066bdSBarry Smith 1619ec5066bdSBarry Smith Developers Note: 1620*d5b43468SJose E. Roman It is an extra maintenance and documentation cost to have two objects with the same functionality. 1621ec5066bdSBarry Smith 1622db781477SPatrick Sanan .seealso: `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()` 1623d9274352SBarry Smith S*/ 162491e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning; 1625d9274352SBarry Smith 162676bdecfbSBarry Smith /*J 16278f6c3df8SBarry Smith MatPartitioningType - String with the name of a PETSc matrix partitioning 1628d9274352SBarry Smith 1629d9274352SBarry Smith Level: beginner 16300d04baf8SBarry Smith dm 163187497f52SBarry Smith .seealso: `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()` 163276bdecfbSBarry Smith J*/ 163319fd82e9SBarry Smith typedef const char *MatPartitioningType; 16342692d6eeSBarry Smith #define MATPARTITIONINGCURRENT "current" 1635aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE "average" 16362692d6eeSBarry Smith #define MATPARTITIONINGSQUARE "square" 16372692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis" 16382692d6eeSBarry Smith #define MATPARTITIONINGCHACO "chaco" 16392692d6eeSBarry Smith #define MATPARTITIONINGPARTY "party" 164050d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch" 164188d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch" 164271306c60Sjroman 1643014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *); 164419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType); 1645014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt); 1646014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat); 1647252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt); 1648014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]); 1649014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]); 1650ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool); 1651ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *); 1652014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *); 1653fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *); 1654668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS); 1655f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *); 1656014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *); 1657bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning)); 1658014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer); 1659fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]); 1660014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning); 166119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *); 1662ca161407SBarry Smith 166327538973SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part); 1664014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning); 1665014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *); 16660752156aSBarry Smith 16679371c9d4SSatish Balay typedef enum { 16689371c9d4SSatish Balay MP_CHACO_MULTILEVEL = 1, 16699371c9d4SSatish Balay MP_CHACO_SPECTRAL = 2, 16709371c9d4SSatish Balay MP_CHACO_LINEAR = 4, 16719371c9d4SSatish Balay MP_CHACO_RANDOM = 5, 16729371c9d4SSatish Balay MP_CHACO_SCATTERED = 6 16739371c9d4SSatish Balay } MPChacoGlobalType; 16746a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[]; 16759371c9d4SSatish Balay typedef enum { 16769371c9d4SSatish Balay MP_CHACO_KERNIGHAN = 1, 16779371c9d4SSatish Balay MP_CHACO_NONE = 2 16789371c9d4SSatish Balay } MPChacoLocalType; 16796a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[]; 16809371c9d4SSatish Balay typedef enum { 16819371c9d4SSatish Balay MP_CHACO_LANCZOS = 0, 16829371c9d4SSatish Balay MP_CHACO_RQI = 1 16839371c9d4SSatish Balay } MPChacoEigenType; 16846a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[]; 1685b6956c12SJose Roman 1686014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType); 1687014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *); 1688014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType); 1689014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *); 1690014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal); 1691014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType); 1692014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *); 1693014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal); 1694014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *); 1695014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt); 1696014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *); 169771306c60Sjroman 169871306c60Sjroman #define MP_PARTY_OPT "opt" 169971306c60Sjroman #define MP_PARTY_LIN "lin" 170071306c60Sjroman #define MP_PARTY_SCA "sca" 170171306c60Sjroman #define MP_PARTY_RAN "ran" 170271306c60Sjroman #define MP_PARTY_GBF "gbf" 170371306c60Sjroman #define MP_PARTY_GCF "gcf" 170471306c60Sjroman #define MP_PARTY_BUB "bub" 170571306c60Sjroman #define MP_PARTY_DEF "def" 1706014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *); 170771306c60Sjroman #define MP_PARTY_HELPFUL_SETS "hs" 170871306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl" 170971306c60Sjroman #define MP_PARTY_NONE "no" 1710014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *); 1711014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal); 1712014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool); 1713014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool); 171471306c60Sjroman 17159371c9d4SSatish Balay typedef enum { 17169371c9d4SSatish Balay MP_PTSCOTCH_DEFAULT, 17179371c9d4SSatish Balay MP_PTSCOTCH_QUALITY, 17189371c9d4SSatish Balay MP_PTSCOTCH_SPEED, 17199371c9d4SSatish Balay MP_PTSCOTCH_BALANCE, 17209371c9d4SSatish Balay MP_PTSCOTCH_SAFETY, 17219371c9d4SSatish Balay MP_PTSCOTCH_SCALABILITY 17229371c9d4SSatish Balay } MPPTScotchStrategyType; 17236a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[]; 1724e0f1cffaSJose Roman 1725014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal); 1726014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *); 1727014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType); 1728014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *); 172971306c60Sjroman 1730b43b03e9SMark F. Adams /* 17316294fa2bSFande Kong * hierarchical partitioning 17326294fa2bSFande Kong */ 17334e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *); 17344e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *); 17354e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt); 17364e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt); 17376294fa2bSFande Kong 1738014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *); 1739591294e4SBarry Smith 17400752156aSBarry Smith /* 1741c786d857SStefano Zampini If you add entries here you must also add them to src/mat/f90-mod/petscmat.h 1742c786d857SStefano Zampini If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx 1743d4fbbf0eSBarry Smith */ 17449371c9d4SSatish Balay typedef enum { 17459371c9d4SSatish Balay MATOP_SET_VALUES = 0, 17461c1c02c0SLois Curfman McInnes MATOP_GET_ROW = 1, 17471c1c02c0SLois Curfman McInnes MATOP_RESTORE_ROW = 2, 17481c1c02c0SLois Curfman McInnes MATOP_MULT = 3, 17491c1c02c0SLois Curfman McInnes MATOP_MULT_ADD = 4, 17507c922b88SBarry Smith MATOP_MULT_TRANSPOSE = 5, 17517c922b88SBarry Smith MATOP_MULT_TRANSPOSE_ADD = 6, 17521c1c02c0SLois Curfman McInnes MATOP_SOLVE = 7, 17531c1c02c0SLois Curfman McInnes MATOP_SOLVE_ADD = 8, 17547c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE = 9, 17557c922b88SBarry Smith MATOP_SOLVE_TRANSPOSE_ADD = 10, 17561c1c02c0SLois Curfman McInnes MATOP_LUFACTOR = 11, 17571c1c02c0SLois Curfman McInnes MATOP_CHOLESKYFACTOR = 12, 1758a714c06dSBarry Smith MATOP_SOR = 13, 17591c1c02c0SLois Curfman McInnes MATOP_TRANSPOSE = 14, 17601c1c02c0SLois Curfman McInnes MATOP_GETINFO = 15, 17611c1c02c0SLois Curfman McInnes MATOP_EQUAL = 16, 17621c1c02c0SLois Curfman McInnes MATOP_GET_DIAGONAL = 17, 17631c1c02c0SLois Curfman McInnes MATOP_DIAGONAL_SCALE = 18, 17641c1c02c0SLois Curfman McInnes MATOP_NORM = 19, 17651c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_BEGIN = 20, 17661c1c02c0SLois Curfman McInnes MATOP_ASSEMBLY_END = 21, 1767d519adbfSMatthew Knepley MATOP_SET_OPTION = 22, 1768d519adbfSMatthew Knepley MATOP_ZERO_ENTRIES = 23, 1769d519adbfSMatthew Knepley MATOP_ZERO_ROWS = 24, 1770d519adbfSMatthew Knepley MATOP_LUFACTOR_SYMBOLIC = 25, 1771d519adbfSMatthew Knepley MATOP_LUFACTOR_NUMERIC = 26, 1772d519adbfSMatthew Knepley MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27, 1773d519adbfSMatthew Knepley MATOP_CHOLESKY_FACTOR_NUMERIC = 28, 1774e5f2d425SStefano Zampini MATOP_SETUP = 29, 1775d519adbfSMatthew Knepley MATOP_ILUFACTOR_SYMBOLIC = 30, 1776d519adbfSMatthew Knepley MATOP_ICCFACTOR_SYMBOLIC = 31, 1777a5b7ff6bSBarry Smith MATOP_GET_DIAGONAL_BLOCK = 32, 1778e5f2d425SStefano Zampini MATOP_SET_INF = 33, 1779d519adbfSMatthew Knepley MATOP_DUPLICATE = 34, 1780d519adbfSMatthew Knepley MATOP_FORWARD_SOLVE = 35, 1781d519adbfSMatthew Knepley MATOP_BACKWARD_SOLVE = 36, 1782d519adbfSMatthew Knepley MATOP_ILUFACTOR = 37, 1783d519adbfSMatthew Knepley MATOP_ICCFACTOR = 38, 1784d519adbfSMatthew Knepley MATOP_AXPY = 39, 17857dae84e0SHong Zhang MATOP_CREATE_SUBMATRICES = 40, 1786d519adbfSMatthew Knepley MATOP_INCREASE_OVERLAP = 41, 1787d519adbfSMatthew Knepley MATOP_GET_VALUES = 42, 1788d519adbfSMatthew Knepley MATOP_COPY = 43, 1789d519adbfSMatthew Knepley MATOP_GET_ROW_MAX = 44, 1790d519adbfSMatthew Knepley MATOP_SCALE = 45, 1791d519adbfSMatthew Knepley MATOP_SHIFT = 46, 179235153367SBarry Smith MATOP_DIAGONAL_SET = 47, 17939d39f69dSJed Brown MATOP_ZERO_ROWS_COLUMNS = 48, 17949d39f69dSJed Brown MATOP_SET_RANDOM = 49, 1795d519adbfSMatthew Knepley MATOP_GET_ROW_IJ = 50, 1796d519adbfSMatthew Knepley MATOP_RESTORE_ROW_IJ = 51, 1797d519adbfSMatthew Knepley MATOP_GET_COLUMN_IJ = 52, 1798d519adbfSMatthew Knepley MATOP_RESTORE_COLUMN_IJ = 53, 1799d519adbfSMatthew Knepley MATOP_FDCOLORING_CREATE = 54, 1800d519adbfSMatthew Knepley MATOP_COLORING_PATCH = 55, 1801d519adbfSMatthew Knepley MATOP_SET_UNFACTORED = 56, 1802d519adbfSMatthew Knepley MATOP_PERMUTE = 57, 1803d519adbfSMatthew Knepley MATOP_SET_VALUES_BLOCKED = 58, 18047dae84e0SHong Zhang MATOP_CREATE_SUBMATRIX = 59, 1805d519adbfSMatthew Knepley MATOP_DESTROY = 60, 1806d519adbfSMatthew Knepley MATOP_VIEW = 61, 1807d519adbfSMatthew Knepley MATOP_CONVERT_FROM = 62, 1808e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_63=63 */ 18097bab7c10SHong Zhang MATOP_MATMAT_MULT_SYMBOLIC = 64, 18107bab7c10SHong Zhang MATOP_MATMAT_MULT_NUMERIC = 65, 1811d519adbfSMatthew Knepley MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66, 1812d519adbfSMatthew Knepley MATOP_SET_VALUES_LOCAL = 67, 1813d519adbfSMatthew Knepley MATOP_ZERO_ROWS_LOCAL = 68, 1814d519adbfSMatthew Knepley MATOP_GET_ROW_MAX_ABS = 69, 1815d519adbfSMatthew Knepley MATOP_GET_ROW_MIN_ABS = 70, 1816d519adbfSMatthew Knepley MATOP_CONVERT = 71, 1817e5f2d425SStefano Zampini MATOP_HAS_OPERATION = 72, 18189d39f69dSJed Brown /* MATOP_PLACEHOLDER_73=73, */ 1819d519adbfSMatthew Knepley MATOP_SET_VALUES_ADIFOR = 74, 1820d519adbfSMatthew Knepley MATOP_FD_COLORING_APPLY = 75, 1821d519adbfSMatthew Knepley MATOP_SET_FROM_OPTIONS = 76, 1822e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_77=77, */ 1823e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_78=78, */ 18249d39f69dSJed Brown MATOP_FIND_ZERO_DIAGONALS = 79, 1825d519adbfSMatthew Knepley MATOP_MULT_MULTIPLE = 80, 1826d519adbfSMatthew Knepley MATOP_SOLVE_MULTIPLE = 81, 1827d519adbfSMatthew Knepley MATOP_GET_INERTIA = 82, 1828d519adbfSMatthew Knepley MATOP_LOAD = 83, 1829d519adbfSMatthew Knepley MATOP_IS_SYMMETRIC = 84, 1830d519adbfSMatthew Knepley MATOP_IS_HERMITIAN = 85, 1831d519adbfSMatthew Knepley MATOP_IS_STRUCTURALLY_SYMMETRIC = 86, 1832820469bcSHong Zhang MATOP_SET_VALUES_BLOCKEDLOCAL = 87, 1833b41ce5d5SBarry Smith MATOP_CREATE_VECS = 88, 1834e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_89=89, */ 1835d519adbfSMatthew Knepley MATOP_MAT_MULT_SYMBOLIC = 90, 1836d519adbfSMatthew Knepley MATOP_MAT_MULT_NUMERIC = 91, 1837e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_92=92, */ 1838d519adbfSMatthew Knepley MATOP_PTAP_SYMBOLIC = 93, 1839d519adbfSMatthew Knepley MATOP_PTAP_NUMERIC = 94, 1840e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_95=95, */ 1841bda6c4cbSBarry Smith MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96, 1842bda6c4cbSBarry Smith MATOP_MAT_TRANSPOSE_MULT_NUMER = 97, 1843e5f2d425SStefano Zampini MATOP_BIND_TO_CPU = 98, 18447a3c3d58SStefano Zampini MATOP_PRODUCTSETFROMOPTIONS = 99, 18457a3c3d58SStefano Zampini MATOP_PRODUCTSYMBOLIC = 100, 18467a3c3d58SStefano Zampini MATOP_PRODUCTNUMERIC = 101, 1847d519adbfSMatthew Knepley MATOP_CONJUGATE = 102, 1848e5f2d425SStefano Zampini MATOP_VIEW_NATIVE = 103, 1849d519adbfSMatthew Knepley MATOP_SET_VALUES_ROW = 104, 1850d519adbfSMatthew Knepley MATOP_REAL_PART = 105, 1851bda6c4cbSBarry Smith MATOP_IMAGINARY_PART = 106, 1852bda6c4cbSBarry Smith MATOP_GET_ROW_UPPER_TRIANGULAR = 107, 1853bda6c4cbSBarry Smith MATOP_RESTORE_ROW_UPPER_TRIANG = 108, 1854bda6c4cbSBarry Smith MATOP_MAT_SOLVE = 109, 185529eadf9eSStefano Zampini MATOP_MAT_SOLVE_TRANSPOSE = 110, 1856d519adbfSMatthew Knepley MATOP_GET_ROW_MIN = 111, 18570e8d04f7SBarry Smith MATOP_GET_COLUMN_VECTOR = 112, 1858d519adbfSMatthew Knepley MATOP_MISSING_DIAGONAL = 113, 18590e8d04f7SBarry Smith MATOP_GET_SEQ_NONZERO_STRUCTUR = 114, 186089c6957cSBarry Smith MATOP_CREATE = 115, 186189c6957cSBarry Smith MATOP_GET_GHOSTS = 116, 18620e8d04f7SBarry Smith MATOP_GET_LOCAL_SUB_MATRIX = 117, 18630e8d04f7SBarry Smith MATOP_RESTORE_LOCALSUB_MATRIX = 118, 1864eeffb40dSHong Zhang MATOP_MULT_DIAGONAL_BLOCK = 119, 18650e8d04f7SBarry Smith MATOP_HERMITIAN_TRANSPOSE = 120, 18660e8d04f7SBarry Smith MATOP_MULT_HERMITIAN_TRANSPOSE = 121, 18670e8d04f7SBarry Smith MATOP_MULT_HERMITIAN_TRANS_ADD = 122, 18680e8d04f7SBarry Smith MATOP_GET_MULTI_PROC_BLOCK = 123, 18699d39f69dSJed Brown MATOP_FIND_NONZERO_ROWS = 124, 18700e8d04f7SBarry Smith MATOP_GET_COLUMN_NORMS = 125, 18719d39f69dSJed Brown MATOP_INVERT_BLOCK_DIAGONAL = 126, 1872e5f2d425SStefano Zampini MATOP_INVERT_VBLOCK_DIAGONAL = 127, 1873b41ce5d5SBarry Smith MATOP_CREATE_SUB_MATRICES_MPI = 128, 18742b8ad9a3SHong Zhang MATOP_SET_VALUES_BATCH = 129, 1875e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_130=130, */ 18760e8d04f7SBarry Smith MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131, 1877e9b602ebSSatish Balay MATOP_TRANSPOSE_MAT_MULT_NUMER = 132, 18780e8d04f7SBarry Smith MATOP_TRANSPOSE_COLORING_CREAT = 133, 18790e8d04f7SBarry Smith MATOP_TRANS_COLORING_APPLY_SPT = 134, 18800e8d04f7SBarry Smith MATOP_TRANS_COLORING_APPLY_DEN = 135, 1881e5f2d425SStefano Zampini /* MATOP_PLACEHOLDER_136=136, */ 18820e8d04f7SBarry Smith MATOP_RART_SYMBOLIC = 137, 18830e8d04f7SBarry Smith MATOP_RART_NUMERIC = 138, 1884e09a3074SHong Zhang MATOP_SET_BLOCK_SIZES = 139, 1885f9426fe0SMark Adams MATOP_AYPX = 140, 18861919a2e2SJed Brown MATOP_RESIDUAL = 141, 18879c8f2541SHong Zhang MATOP_FDCOLORING_SETUP = 142, 1888e5f2d425SStefano Zampini MATOP_FIND_OFFBLOCK_ENTRIES = 143, 18892d033e1fSHong Zhang MATOP_MPICONCATENATESEQ = 144, 1890bb01b7b0SPatrick Sanan MATOP_DESTROYSUBMATRICES = 145, 1891e265f6d6SPatrick Sanan MATOP_TRANSPOSE_SOLVE = 146, 1892e265f6d6SPatrick Sanan MATOP_GET_VALUES_LOCAL = 147 1893fae171e0SBarry Smith } MatOperation; 18940c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void)); 1895976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void)); 1896976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *); 189794342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *); 1898d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatProductClear() (since version 3.14)") static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A) 1899d71ae5a4SJacob Faibussowitsch { 19009371c9d4SSatish Balay return MatProductClear(A); 19019371c9d4SSatish Balay } 1902014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void)); 1903014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void)); 1904014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *); 1905800f99ffSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *)); 1906db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType); 1907f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 1908f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 19090c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat); 1910b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType); 1911b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *); 1912112a2221SBarry Smith 191390ace30eSBarry Smith /* 191490ace30eSBarry Smith Codes for matrices stored on disk. By default they are 191590ace30eSBarry Smith stored in a universal format. By changing the format with 19166a9046bcSBarry Smith PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will 191790ace30eSBarry Smith be stored in a way natural for the matrix, for example dense matrices 191890ace30eSBarry Smith would be stored as dense. Matrices stored this way may only be 1919f4403165SShri Abhyankar read into matrices of the same type. 192090ace30eSBarry Smith */ 192190ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1 192290ace30eSBarry Smith 1923014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal); 192475d48cdbSStefano Zampini 19258546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType); 192675d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 192775d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool); 1928f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool); 1929014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *); 19303b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *); 1931014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat); 1932e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 193325ef9dfeSBarry Smith PETSC_EXTERN PETSC_DEPRECATED_FUNCTION("Use the MatConvert() interface (since version 3.10)") PetscErrorCode MatISGetMPIXAIJ(Mat, MatReuse, Mat *); 19341f4e1ec7SBarry Smith 1935d9274352SBarry Smith /*S 1936d9274352SBarry Smith MatNullSpace - Object that removes a null space from a vector, i.e. 1937cb6b9846SMatthew Knepley orthogonalizes the vector to a subspace 1938d9274352SBarry Smith 1939f7a9e4ceSBarry Smith Level: advanced 1940d9274352SBarry Smith 194187497f52SBarry Smith .seealso: `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()` 1942d9274352SBarry Smith S*/ 194374637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace; 1944d9274352SBarry Smith 1945014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *); 1946014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *); 1947014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *); 1948d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec); 1949014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *); 19505fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *); 19515fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace); 1952014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace); 1953014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace); 1954014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *); 1955014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *); 1956014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer); 1957014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **); 1958014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *); 195974637425SBarry Smith 1960014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS); 1961014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal); 1962014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *); 19633f1d51d7SBarry Smith 1964014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *); 1965014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *); 1966014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *); 1967c4f061fbSSatish Balay 19680bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *); 19690bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *); 19700bacdadaSStefano Zampini 1971d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatComputeOperator() (since version 3.12)") static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B) 1972d71ae5a4SJacob Faibussowitsch { 19739371c9d4SSatish Balay return MatComputeOperator(A, NULL, B); 19749371c9d4SSatish Balay } 1975d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatComputeOperatorTranspose() (since version 3.12)") static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B) 1976d71ae5a4SJacob Faibussowitsch { 19779371c9d4SSatish Balay return MatComputeOperatorTranspose(A, NULL, B); 19789371c9d4SSatish Balay } 1979b0a32e0cSBarry Smith 198049bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *); 198149bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *); 1982a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **); 1983a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 1984a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **); 1985a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **); 1986a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **); 1987a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 1988a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **); 1989a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **); 1990dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat); 1991dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]); 1992dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]); 1993910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *); 199449bd79ccSDebojyoti Ghosh 1995014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec); 199604f1ad80SBarry Smith 1997014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 1998014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec); 1999014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *); 2000014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *)); 2001014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec)); 2002014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt); 2003014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat); 2004014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal); 2005014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt); 2006014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *); 2007014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]); 2008014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *); 2009014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *); 2010e884886fSBarry Smith 20116370053bSBarry Smith /*S 20126370053bSBarry Smith MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free 20136370053bSBarry Smith Jacobian vector products 2014e884886fSBarry Smith 201595452b02SPatrick Sanan Notes: 201687497f52SBarry Smith `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure 20176370053bSBarry Smith 201887497f52SBarry Smith MatMFFD*() methods actually take the Mat as their first argument. Not a `MatMFFD` data structure 20196370053bSBarry Smith 20206370053bSBarry Smith Level: developer 20216370053bSBarry Smith 2022db781477SPatrick Sanan .seealso: `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()` 20236370053bSBarry Smith S*/ 2024e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD; 2025e884886fSBarry Smith 202676bdecfbSBarry Smith /*J 2027e884886fSBarry Smith MatMFFDType - algorithm used to compute the h used in computing matrix-vector products via differencing of the function 2028e884886fSBarry Smith 2029e884886fSBarry Smith Level: beginner 2030e884886fSBarry Smith 2031db781477SPatrick Sanan .seealso: `MatMFFDSetType()`, `MatMFFDRegister()` 203276bdecfbSBarry Smith J*/ 203319fd82e9SBarry Smith typedef const char *MatMFFDType; 2034e884886fSBarry Smith #define MATMFFD_DS "ds" 2035e884886fSBarry Smith #define MATMFFD_WP "wp" 2036e884886fSBarry Smith 203719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType); 2038bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD)); 2039e884886fSBarry Smith 2040014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal); 2041014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool); 2042e884886fSBarry Smith 204361ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType); 204461ab5df0SBarry Smith 2045014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *); 2046014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *); 20477dbadf16SMatthew Knepley 204853022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS 204953022affSStefano Zampini PETSC_EXTERN_TYPEDEF typedef PetscScalar (*MatH2OpusKernel)(PetscInt, PetscReal[], PetscReal[], void *); 205053022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernel, void *, PetscReal, PetscInt, PetscInt, Mat *); 205153022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *); 205253022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal); 205353022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat); 205453022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal); 205553022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool); 205653022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *); 205753022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *); 205853022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *); 2059300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar); 2060a0d2e7d8SStefano Zampini #endif 2061a0d2e7d8SStefano Zampini 2062c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL 206398e73e17SPierre Jolivet PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatHtoolKernel)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *); 2064c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernel, void *, Mat *); 2065c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernel, void *); 206698e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *); 206798e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *); 206898e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool); 2069c7a4214aSPierre Jolivet /*E 207087497f52SBarry Smith MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL` 2071c7a4214aSPierre Jolivet 2072c7a4214aSPierre Jolivet Level: beginner 2073c7a4214aSPierre Jolivet 2074c7a4214aSPierre Jolivet Values: 207587497f52SBarry Smith + `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation 207687497f52SBarry Smith . `MAT_HTOOL_COMPRESSOR_FULL_ACA` - full adaptive cross approximation 207787497f52SBarry Smith - `MAT_HTOOL_COMPRESSOR_SVD` - singular value decomposition 2078c7a4214aSPierre Jolivet 2079db781477SPatrick Sanan .seealso: `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType` 2080c7a4214aSPierre Jolivet E*/ 20819371c9d4SSatish Balay typedef enum { 20829371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA, 20839371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_FULL_ACA, 20849371c9d4SSatish Balay MAT_HTOOL_COMPRESSOR_SVD 20859371c9d4SSatish Balay } MatHtoolCompressorType; 208698e73e17SPierre Jolivet /*E 208787497f52SBarry Smith MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL` 208898e73e17SPierre Jolivet 208998e73e17SPierre Jolivet Level: beginner 209098e73e17SPierre Jolivet 209198e73e17SPierre Jolivet Values: 209287497f52SBarry Smith + `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default) - axis computed via principle component analysis, split uniformly 209387497f52SBarry Smith . `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC` - axis computed via principle component analysis, split barycentrically 209487497f52SBarry Smith . `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR` - axis along the largest extent of the bounding box, split uniformly 209587497f52SBarry Smith - `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically 209698e73e17SPierre Jolivet 209798e73e17SPierre Jolivet Notes: higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types 209898e73e17SPierre Jolivet 2099db781477SPatrick Sanan .seealso: `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType` 210098e73e17SPierre Jolivet E*/ 21019371c9d4SSatish Balay typedef enum { 21029371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_PCA_REGULAR, 21039371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC, 21049371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR, 21059371c9d4SSatish Balay MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC 21069371c9d4SSatish Balay } MatHtoolClusteringType; 2107c7a4214aSPierre Jolivet #endif 2108c7a4214aSPierre Jolivet 210997969023SHong Zhang #ifdef PETSC_HAVE_MUMPS 2110014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt); 2111bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *); 2112b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal); 2113bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *); 2114bc6112feSHong Zhang 2115ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *); 2116ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *); 2117ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *); 2118ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *); 211989a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat); 21200e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat); 212197969023SHong Zhang #endif 212223a5497aSJed Brown 2123b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO 2124d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt); 2125b500a6b7SJose David Bermeol #endif 2126b500a6b7SJose David Bermeol 2127d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO 2128d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt); 2129d305a81bSVasiliy Kozyrev #endif 2130d305a81bSVasiliy Kozyrev 2131d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU 2132014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal); 2133d954db57SHong Zhang #endif 2134d954db57SHong Zhang 2135fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST 2136fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *); 2137fb785984SHong Zhang #endif 2138fb785984SHong Zhang 2139575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK 2140542aee0fSPieter Ghysels /*E 214187497f52SBarry Smith MatSTRUMPACKReordering - sparsity reducing ordering to be used in `STRUMPACK` 2142542aee0fSPieter Ghysels 2143542aee0fSPieter Ghysels Level: intermediate 2144542aee0fSPieter Ghysels E*/ 21459371c9d4SSatish Balay typedef enum { 21469371c9d4SSatish Balay MAT_STRUMPACK_NATURAL = 0, 214734f43fa5SPieter Ghysels MAT_STRUMPACK_METIS = 1, 214834f43fa5SPieter Ghysels MAT_STRUMPACK_PARMETIS = 2, 214934f43fa5SPieter Ghysels MAT_STRUMPACK_SCOTCH = 3, 215034f43fa5SPieter Ghysels MAT_STRUMPACK_PTSCOTCH = 4, 21519371c9d4SSatish Balay MAT_STRUMPACK_RCM = 5 21529371c9d4SSatish Balay } MatSTRUMPACKReordering; 215334f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering); 2154575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool); 215534f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSRelTol(Mat, PetscReal); 2156d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSTRUMPACKSetHSSRelTol() (since version 3.9)") static inline PetscErrorCode MatSTRUMPACKSetHSSRelCompTol(Mat mat, PetscReal rtol) 2157d71ae5a4SJacob Faibussowitsch { 21589371c9d4SSatish Balay return MatSTRUMPACKSetHSSRelTol(mat, rtol); 21599371c9d4SSatish Balay } 216034f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSAbsTol(Mat, PetscReal); 216134f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMinSepSize(Mat, PetscInt); 2162d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSTRUMPACKSetHSSMinSepSize() (since version 3.9)") static inline PetscErrorCode MatSTRUMPACKSetHSSMinSize(Mat mat, PetscInt hssminsize) 2163d71ae5a4SJacob Faibussowitsch { 21649371c9d4SSatish Balay return MatSTRUMPACKSetHSSMinSepSize(mat, hssminsize); 21659371c9d4SSatish Balay } 216634f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMaxRank(Mat, PetscInt); 2167a36bf211SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSLeafSize(Mat, PetscInt); 2168575704cbSPieter Ghysels #endif 2169575704cbSPieter Ghysels 2170b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool); 21712216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *); 2172d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatBindToCPU (since v3.13)") static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg) 2173d71ae5a4SJacob Faibussowitsch { 21749371c9d4SSatish Balay return MatBindToCPU(A, flg); 21759371c9d4SSatish Balay } 217665a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool); 2177e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *); 2178e7e92044SBarry Smith 2179042217e8SBarry Smith typedef struct _n_SplitCSRMat *PetscSplitCSRDataStructure; 2180042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatCUSPARSEGetDeviceMatWrite(Mat, PetscSplitCSRDataStructure *); 2181a587d139SMark 2182a587d139SMark #ifdef PETSC_HAVE_KOKKOS_KERNELS 2183042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatKokkosGetDeviceMatWrite(Mat, PetscSplitCSRDataStructure *); 2184042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJKokkosSetDeviceMat(Mat, PetscSplitCSRDataStructure); 2185042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJKokkosGetDeviceMat(Mat, PetscSplitCSRDataStructure *); 2186a587d139SMark #endif 2187a587d139SMark 2188aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA 21893f9c0db1SPaul Mullowney /*E 2190e057df02SPaul Mullowney MatCUSPARSEStorageFormat - indicates the storage format for CUSPARSE (GPU) 21912692e278SPaul Mullowney matrices. 2192e057df02SPaul Mullowney 2193e057df02SPaul Mullowney Not Collective 2194e057df02SPaul Mullowney 219587497f52SBarry Smith + `MAT_CUSPARSE_CSR` - Compressed Sparse Row 219687497f52SBarry Smith . `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later). 219787497f52SBarry Smith - `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later). 2198e057df02SPaul Mullowney 2199e057df02SPaul Mullowney Level: intermediate 2200e057df02SPaul Mullowney 220187497f52SBarry Smith Developer Note: 2202af0996ceSBarry Smith Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 2203e057df02SPaul Mullowney 2204db781477SPatrick Sanan .seealso: `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation` 2205e057df02SPaul Mullowney E*/ 2206e057df02SPaul Mullowney 22079371c9d4SSatish Balay typedef enum { 22089371c9d4SSatish Balay MAT_CUSPARSE_CSR, 22099371c9d4SSatish Balay MAT_CUSPARSE_ELL, 22109371c9d4SSatish Balay MAT_CUSPARSE_HYB 22119371c9d4SSatish Balay } MatCUSPARSEStorageFormat; 2212e057df02SPaul Mullowney 2213e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */ 2214e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[]; 2215e057df02SPaul Mullowney 22163f9c0db1SPaul Mullowney /*E 2217e057df02SPaul Mullowney MatCUSPARSEFormatOperation - indicates the operation of CUSPARSE (GPU) 22182692e278SPaul Mullowney matrices whose operation should use a particular storage format. 2219e057df02SPaul Mullowney 2220e057df02SPaul Mullowney Not Collective 2221e057df02SPaul Mullowney 222287497f52SBarry Smith + `MAT_CUSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel MatMult 222387497f52SBarry Smith . `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel MatMult 222487497f52SBarry Smith . `MAT_CUSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) MatMult 222587497f52SBarry Smith - `MAT_CUSPARSE_ALL` - sets the storage format for all CUSPARSE (GPU) matrices 2226e057df02SPaul Mullowney 2227e057df02SPaul Mullowney Level: intermediate 2228e057df02SPaul Mullowney 2229db781477SPatrick Sanan .seealso: `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat` 2230e057df02SPaul Mullowney E*/ 22319371c9d4SSatish Balay typedef enum { 22329371c9d4SSatish Balay MAT_CUSPARSE_MULT_DIAG, 22339371c9d4SSatish Balay MAT_CUSPARSE_MULT_OFFDIAG, 22349371c9d4SSatish Balay MAT_CUSPARSE_MULT, 22359371c9d4SSatish Balay MAT_CUSPARSE_ALL 22369371c9d4SSatish Balay } MatCUSPARSEFormatOperation; 2237e057df02SPaul Mullowney 223810e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 223910e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2240e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat); 2241365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool); 22425f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 22435f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 22445f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **); 22455f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **); 22465f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **); 22475f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **); 22485f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **); 22495f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **); 2250637a0070SStefano Zampini 2251637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 2252637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 2253637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat, PetscScalar[]); 2254637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqDenseCUDASetPreallocation(Mat, PetscScalar[]); 2255637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **); 2256637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **); 2257637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **); 2258637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **); 2259637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **); 2260637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **); 2261637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *); 2262d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *); 2263637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat); 22643fa6b06aSMark Adams 22659ae82921SPaul Mullowney #endif 22669ae82921SPaul Mullowney 226747d993e7Ssuyashtn #ifdef PETSC_HAVE_HIP 226847d993e7Ssuyashtn /*E 226947d993e7Ssuyashtn MatHIPSPARSEStorageFormat - indicates the storage format for HIPSPARSE (GPU) 227047d993e7Ssuyashtn matrices. 227147d993e7Ssuyashtn 227247d993e7Ssuyashtn Not Collective 227347d993e7Ssuyashtn 227447d993e7Ssuyashtn + MAT_HIPSPARSE_CSR - Compressed Sparse Row 227547d993e7Ssuyashtn . MAT_HIPSPARSE_ELL - Ellpack 227647d993e7Ssuyashtn - MAT_HIPSPARSE_HYB - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later). 227747d993e7Ssuyashtn 227847d993e7Ssuyashtn Level: intermediate 227947d993e7Ssuyashtn 228047d993e7Ssuyashtn Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 228147d993e7Ssuyashtn 228247d993e7Ssuyashtn .seealso: `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation` 228347d993e7Ssuyashtn E*/ 228447d993e7Ssuyashtn 228547d993e7Ssuyashtn typedef enum { 228647d993e7Ssuyashtn MAT_HIPSPARSE_CSR, 228747d993e7Ssuyashtn MAT_HIPSPARSE_ELL, 228847d993e7Ssuyashtn MAT_HIPSPARSE_HYB 228947d993e7Ssuyashtn } MatHIPSPARSEStorageFormat; 229047d993e7Ssuyashtn 229147d993e7Ssuyashtn /* these will be strings associated with enumerated type defined above */ 229247d993e7Ssuyashtn PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[]; 229347d993e7Ssuyashtn 229447d993e7Ssuyashtn /*E 229547d993e7Ssuyashtn MatHIPSPARSEFormatOperation - indicates the operation of HIPSPARSE (GPU) 229647d993e7Ssuyashtn matrices whose operation should use a particular storage format. 229747d993e7Ssuyashtn 229847d993e7Ssuyashtn Not Collective 229947d993e7Ssuyashtn 230047d993e7Ssuyashtn + MAT_HIPSPARSE_MULT_DIAG - sets the storage format for the diagonal matrix in the parallel MatMult 230147d993e7Ssuyashtn . MAT_HIPSPARSE_MULT_OFFDIAG - sets the storage format for the offdiagonal matrix in the parallel MatMult 230247d993e7Ssuyashtn . MAT_HIPSPARSE_MULT - sets the storage format for the entire matrix in the serial (single GPU) MatMult 230347d993e7Ssuyashtn - MAT_HIPSPARSE_ALL - sets the storage format for all HIPSPARSE (GPU) matrices 230447d993e7Ssuyashtn 230547d993e7Ssuyashtn Level: intermediate 230647d993e7Ssuyashtn 230747d993e7Ssuyashtn .seealso: `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat` 230847d993e7Ssuyashtn E*/ 230947d993e7Ssuyashtn typedef enum { 231047d993e7Ssuyashtn MAT_HIPSPARSE_MULT_DIAG, 231147d993e7Ssuyashtn MAT_HIPSPARSE_MULT_OFFDIAG, 231247d993e7Ssuyashtn MAT_HIPSPARSE_MULT, 231347d993e7Ssuyashtn MAT_HIPSPARSE_ALL 231447d993e7Ssuyashtn } MatHIPSPARSEFormatOperation; 231547d993e7Ssuyashtn 231647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 231747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 231847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat); 231947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool); 232047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 232147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 232247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **); 232347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **); 232447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **); 232547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **); 232647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **); 232747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **); 232847d993e7Ssuyashtn 232947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 233047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 233147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatMPIDenseHIPSetPreallocation(Mat, PetscScalar[]); 233247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqDenseHIPSetPreallocation(Mat, PetscScalar[]); 233347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **); 233447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **); 233547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **); 233647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **); 233747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **); 233847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **); 233947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *); 234047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *); 234147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat); 234247d993e7Ssuyashtn 234347d993e7Ssuyashtn #endif 234447d993e7Ssuyashtn 2345d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL) 2346d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2347d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2348d67ff14aSKarl Rupp #endif 2349d67ff14aSKarl Rupp 235054efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW) 2351014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec); 2352014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec); 23532a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *); 235454efbe56SHong Zhang #endif 235554efbe56SHong Zhang 2356d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 2357d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2358d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt); 2359d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *); 2360d24d4204SJose E. Roman #endif 2361d24d4204SJose E. Roman 2362014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *); 2363014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *); 2364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]); 2365014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]); 2366014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***); 2367014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *); 236819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType); 2369014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]); 2370014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat); 2371d8588912SDave May 23724325cce7SMatthew G Knepley PETSC_EXTERN PetscErrorCode MatChop(Mat, PetscReal); 2373e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *); 23744325cce7SMatthew G Knepley 2375b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **); 237653dd7562SDmitry Karpeev 2377c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat); 2378c094ef40SMatthew G. Knepley 2379539c167fSBarry Smith PETSC_INTERN PetscErrorCode MatHeaderMerge(Mat, Mat *); 2380539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *); 23811a2c6b5cSJunchao Zhang 23827ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *); 238372833a62Smarkadams4 23842d776b49SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, Mat *); 238523a5497aSJed Brown #endif 2386