xref: /petsc/include/petscmat.h (revision eb495b2a1ce91d3cefa3ff27dc46615c7b2f0cbf)
12eac72dbSBarry Smith /*
22eac72dbSBarry Smith      Include file for the matrix component of PETSc
32eac72dbSBarry Smith */
426bd1501SBarry Smith #ifndef PETSCMAT_H
526bd1501SBarry Smith #define PETSCMAT_H
6ac09b921SBarry Smith 
72c8e378dSBarry Smith #include <petscvec.h>
82eac72dbSBarry Smith 
9ac09b921SBarry Smith /* SUBMANSEC = Mat */
10ac09b921SBarry Smith 
11d9274352SBarry Smith /*S
128f6c3df8SBarry Smith      Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without
138f6c3df8SBarry Smith            an explicit sparse representation (such as matrix-free operators)
142eac72dbSBarry Smith 
15d91e6319SBarry Smith    Level: beginner
16d91e6319SBarry Smith 
172ef1f0ffSBarry Smith    Note:
1816a05f60SBarry Smith    See [](doc_matrix), [](chapter_matrices) and `MatType` for available matrix types
192ef1f0ffSBarry Smith 
2016a05f60SBarry Smith .seealso: [](doc_matrix), [](chapter_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()`
21d9274352SBarry Smith S*/
22d9274352SBarry Smith typedef struct _p_Mat *Mat;
23d9274352SBarry Smith 
2476bdecfbSBarry Smith /*J
258f6c3df8SBarry Smith     MatType - String with the name of a PETSc matrix type
26d9274352SBarry Smith 
27d9274352SBarry Smith    Level: beginner
28d9274352SBarry Smith 
292ef1f0ffSBarry Smith    Note:
302ef1f0ffSBarry Smith    [](doc_matrix) for a table of available matrix types
312ef1f0ffSBarry Smith 
3216a05f60SBarry Smith .seealso: [](doc_matrix), [](chapter_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()`
3376bdecfbSBarry Smith J*/
3419fd82e9SBarry Smith typedef const char *MatType;
35273d9f13SBarry Smith #define MATSAME                      "same"
365a11e1b2SBarry Smith #define MATMAIJ                      "maij"
37273d9f13SBarry Smith #define MATSEQMAIJ                   "seqmaij"
38273d9f13SBarry Smith #define MATMPIMAIJ                   "mpimaij"
3949bd79ccSDebojyoti Ghosh #define MATKAIJ                      "kaij"
4049bd79ccSDebojyoti Ghosh #define MATSEQKAIJ                   "seqkaij"
4149bd79ccSDebojyoti Ghosh #define MATMPIKAIJ                   "mpikaij"
42273d9f13SBarry Smith #define MATIS                        "is"
435a11e1b2SBarry Smith #define MATAIJ                       "aij"
44273d9f13SBarry Smith #define MATSEQAIJ                    "seqaij"
45273d9f13SBarry Smith #define MATMPIAIJ                    "mpiaij"
465a11e1b2SBarry Smith #define MATAIJCRL                    "aijcrl"
475a11e1b2SBarry Smith #define MATSEQAIJCRL                 "seqaijcrl"
485a11e1b2SBarry Smith #define MATMPIAIJCRL                 "mpiaijcrl"
499ae82921SPaul Mullowney #define MATAIJCUSPARSE               "aijcusparse"
509ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE            "seqaijcusparse"
519ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE            "mpiaijcusparse"
5247d993e7Ssuyashtn #define MATAIJHIPSPARSE              "aijhipsparse"
5347d993e7Ssuyashtn #define MATSEQAIJHIPSPARSE           "seqaijhipsparse"
5447d993e7Ssuyashtn #define MATMPIAIJHIPSPARSE           "mpiaijhipsparse"
558c3ff71bSJunchao Zhang #define MATAIJKOKKOS                 "aijkokkos"
568c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS              "seqaijkokkos"
578c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS              "mpiaijkokkos"
58d67ff14aSKarl Rupp #define MATAIJVIENNACL               "aijviennacl"
59d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL            "seqaijviennacl"
60d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL            "mpiaijviennacl"
615a11e1b2SBarry Smith #define MATAIJPERM                   "aijperm"
625a11e1b2SBarry Smith #define MATSEQAIJPERM                "seqaijperm"
635a11e1b2SBarry Smith #define MATMPIAIJPERM                "mpiaijperm"
644dfdc2d9SRichard Tran Mills #define MATAIJSELL                   "aijsell"
654dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL                "seqaijsell"
664dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL                "mpiaijsell"
674a2a386eSRichard Tran Mills #define MATAIJMKL                    "aijmkl"
684a2a386eSRichard Tran Mills #define MATSEQAIJMKL                 "seqaijmkl"
694a2a386eSRichard Tran Mills #define MATMPIAIJMKL                 "mpiaijmkl"
70b5b72c8aSIrina Sokolova #define MATBAIJMKL                   "baijmkl"
71b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL                "seqbaijmkl"
72b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL                "mpibaijmkl"
73273d9f13SBarry Smith #define MATSHELL                     "shell"
74c1fff1c6SRichard Tran Mills #define MATCENTERING                 "centering"
755a11e1b2SBarry Smith #define MATDENSE                     "dense"
76637a0070SStefano Zampini #define MATDENSECUDA                 "densecuda"
7747d993e7Ssuyashtn #define MATDENSEHIP                  "densehip"
78209238afSKris Buschelman #define MATSEQDENSE                  "seqdense"
79bfc799aaSStefano Zampini #define MATSEQDENSECUDA              "seqdensecuda"
8047d993e7Ssuyashtn #define MATSEQDENSEHIP               "seqdensehip"
81273d9f13SBarry Smith #define MATMPIDENSE                  "mpidense"
82637a0070SStefano Zampini #define MATMPIDENSECUDA              "mpidensecuda"
8347d993e7Ssuyashtn #define MATMPIDENSEHIP               "mpidensehip"
84db31f6deSJed Brown #define MATELEMENTAL                 "elemental"
85d24d4204SJose E. Roman #define MATSCALAPACK                 "scalapack"
865a11e1b2SBarry Smith #define MATBAIJ                      "baij"
87273d9f13SBarry Smith #define MATSEQBAIJ                   "seqbaij"
88273d9f13SBarry Smith #define MATMPIBAIJ                   "mpibaij"
89273d9f13SBarry Smith #define MATMPIADJ                    "mpiadj"
905a11e1b2SBarry Smith #define MATSBAIJ                     "sbaij"
91273d9f13SBarry Smith #define MATSEQSBAIJ                  "seqsbaij"
92273d9f13SBarry Smith #define MATMPISBAIJ                  "mpisbaij"
93cebc7f6cSBarry Smith #define MATMFFD                      "mffd"
94c8a8475eSBarry Smith #define MATNORMAL                    "normal"
95c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN           "normalh"
96ab92ecdeSBarry Smith #define MATLRC                       "lrc"
972a6744ebSBarry Smith #define MATSCATTER                   "scatter"
98421e10b8SBarry Smith #define MATBLOCKMAT                  "blockmat"
99793850ffSBarry Smith #define MATCOMPOSITE                 "composite"
1001f8c7532SHong Zhang #define MATFFT                       "fft"
1011f8c7532SHong Zhang #define MATFFTW                      "fftw"
102e133240eSMatthew G Knepley #define MATSEQCUFFT                  "seqcufft"
10347d993e7Ssuyashtn #define MATSEQHIPFFT                 "seqhipfft"
104013e2dc7SBarry Smith #define MATTRANSPOSEMAT              PETSC_DEPRECATED_MACRO("GCC warning \"MATTRANSPOSEMAT macro is deprecated use MATTRANSPOSEVIRTUAL (since version 3.18)\"") "transpose"
105013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL          "transpose"
106013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose"
10772ca8751SBarry Smith #define MATSCHURCOMPLEMENT           "schurcomplement"
1081d6018f0SLisandro Dalcin #define MATPYTHON                    "python"
10963c07aadSStefano Zampini #define MATHYPRE                     "hypre"
110f91d8e95SBarry Smith #define MATHYPRESTRUCT               "hyprestruct"
111a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT              "hypresstruct"
112ee1cef2cSJed Brown #define MATSUBMATRIX                 "submatrix"
1132c0dbf93SJed Brown #define MATLOCALREF                  "localref"
114d8588912SDave May #define MATNEST                      "nest"
115c094ef40SMatthew G. Knepley #define MATPREALLOCATOR              "preallocator"
116d4002b98SHong Zhang #define MATSELL                      "sell"
117d4002b98SHong Zhang #define MATSEQSELL                   "seqsell"
118d4002b98SHong Zhang #define MATMPISELL                   "mpisell"
119a3b2e22bSHong Zhang #define MATDUMMY                     "dummy"
120cd929ea3SAlp Dener #define MATLMVM                      "lmvm"
12178e4361aSAlp Dener #define MATLMVMDFP                   "lmvmdfp"
12278e4361aSAlp Dener #define MATLMVMBFGS                  "lmvmbfgs"
12378e4361aSAlp Dener #define MATLMVMSR1                   "lmvmsr1"
124864588a7SAlp Dener #define MATLMVMBROYDEN               "lmvmbroyden"
125864588a7SAlp Dener #define MATLMVMBADBROYDEN            "lmvmbadbroyden"
126864588a7SAlp Dener #define MATLMVMSYMBROYDEN            "lmvmsymbroyden"
127864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN         "lmvmsymbadbroyden"
128864588a7SAlp Dener #define MATLMVMDIAGBROYDEN           "lmvmdiagbroyden"
1293423f386SBarry Smith #define MATCONSTANTDIAGONAL          "constantdiagonal"
130c7a4214aSPierre Jolivet #define MATHTOOL                     "htool"
13153022affSStefano Zampini #define MATH2OPUS                    "h2opus"
132773941d6SBarry Smith 
13376bdecfbSBarry Smith /*J
13416a05f60SBarry Smith     MatSolverType - String with the name of a PETSc factorization based matrix solver type.
1359989ab13SBarry Smith 
136c2b89b5dSBarry Smith     For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc
1379989ab13SBarry Smith 
1389989ab13SBarry Smith    Level: beginner
1399989ab13SBarry Smith 
1402ef1f0ffSBarry Smith    Note:
14116a05f60SBarry Smith    `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as
14216a05f60SBarry Smith    a ./configure option to install them
143c7ccbb75SBarry Smith 
1442ef1f0ffSBarry Smith .seealso: [](sec_matfactor), [](chapter_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()`
14576bdecfbSBarry Smith J*/
146ea799195SBarry Smith typedef const char *MatSolverType;
1472692d6eeSBarry Smith #define MATSOLVERSUPERLU         "superlu"
1482692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST    "superlu_dist"
14908f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK       "strumpack"
1502692d6eeSBarry Smith #define MATSOLVERUMFPACK         "umfpack"
15120db9a53SJed Brown #define MATSOLVERCHOLMOD         "cholmod"
152d89f5e7aSBarry Smith #define MATSOLVERKLU             "klu"
153418810c4SBarry Smith #define MATSOLVERSPARSEELEMENTAL "sparseelemental"
154d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL       "elemental"
155d24d4204SJose E. Roman #define MATSOLVERSCALAPACK       "scalapack"
1562692d6eeSBarry Smith #define MATSOLVERESSL            "essl"
1572692d6eeSBarry Smith #define MATSOLVERLUSOL           "lusol"
1582692d6eeSBarry Smith #define MATSOLVERMUMPS           "mumps"
159d615f992SSatish Balay #define MATSOLVERMKL_PARDISO     "mkl_pardiso"
160d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO    "mkl_cpardiso"
1612692d6eeSBarry Smith #define MATSOLVERPASTIX          "pastix"
1622692d6eeSBarry Smith #define MATSOLVERMATLAB          "matlab"
1632692d6eeSBarry Smith #define MATSOLVERPETSC           "petsc"
1642692d6eeSBarry Smith #define MATSOLVERBAS             "bas"
1659ae82921SPaul Mullowney #define MATSOLVERCUSPARSE        "cusparse"
166bddcd29dSMark Adams #define MATSOLVERCUSPARSEBAND    "cusparseband"
167bfc799aaSStefano Zampini #define MATSOLVERCUDA            "cuda"
16847d993e7Ssuyashtn #define MATSOLVERHIPSPARSE       "hipsparse"
16947d993e7Ssuyashtn #define MATSOLVERHIPSPARSEBAND   "hipsparseband"
17047d993e7Ssuyashtn #define MATSOLVERHIP             "hip"
171930e68a5SMark Adams #define MATSOLVERKOKKOS          "kokkos"
1728f7e8f9dSMark Adams #define MATSOLVERKOKKOSDEVICE    "kokkosdevice"
173a2fc1e05SToby Isaac #define MATSOLVERSPQR            "spqr"
174c0cdd4a1SDahai Guo 
175b24902e0SBarry Smith /*E
176b24902e0SBarry Smith     MatFactorType - indicates what type of factorization is requested
177b24902e0SBarry Smith 
1782ef1f0ffSBarry Smith     Values:
1792ef1f0ffSBarry Smith +  `MAT_FACTOR_LU` - LU factorization
1802ef1f0ffSBarry Smith .  `MAT_FACTOR_CHOLESKY` - Cholesky factorization
1812ef1f0ffSBarry Smith .  `MAT_FACTOR_ILU` - ILU factorization
1822ef1f0ffSBarry Smith .  `MAT_FACTOR_ICC` - incomplete Cholesky factorization
1832ef1f0ffSBarry Smith .  `MAT_FACTOR_ILUDT` - ILU factorization with drop tolerance
1842ef1f0ffSBarry Smith -  `MAT_FACTOR_QR` - QR factorization
185b24902e0SBarry Smith 
18616a05f60SBarry Smith     Level: beginner
18716a05f60SBarry Smith 
1882ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()`
189b24902e0SBarry Smith E*/
1909371c9d4SSatish Balay typedef enum {
1919371c9d4SSatish Balay   MAT_FACTOR_NONE,
1929371c9d4SSatish Balay   MAT_FACTOR_LU,
1939371c9d4SSatish Balay   MAT_FACTOR_CHOLESKY,
1949371c9d4SSatish Balay   MAT_FACTOR_ILU,
1959371c9d4SSatish Balay   MAT_FACTOR_ICC,
1969371c9d4SSatish Balay   MAT_FACTOR_ILUDT,
1979371c9d4SSatish Balay   MAT_FACTOR_QR,
1989371c9d4SSatish Balay   MAT_FACTOR_NUM_TYPES
1999371c9d4SSatish Balay } MatFactorType;
200014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[];
201e92e720dSBarry Smith 
202ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *);
203ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *);
204f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *);
205d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatFactorGetCanUseOrdering() (since version 3.15)") static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b)
206d71ae5a4SJacob Faibussowitsch {
2079371c9d4SSatish Balay   return MatFactorGetCanUseOrdering(A, b);
2089371c9d4SSatish Balay }
209ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *);
210014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *);
2117abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType);
2122430ea28SJose E. Roman PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatSolverFunction)(Mat, MatFactorType, Mat *);
2132430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode            MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFunction);
2142430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode            MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFunction *);
21525ef9dfeSBarry Smith typedef MatSolverType MatSolverPackage PETSC_DEPRECATED_TYPEDEF("Use MatSolverType (since version 3.9)");
216d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSolverTypeRegister() (since version 3.9)") static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFunction f)
217d71ae5a4SJacob Faibussowitsch {
2189371c9d4SSatish Balay   return MatSolverTypeRegister(stype, mtype, ftype, f);
2199371c9d4SSatish Balay }
220d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSolverTypeGet() (since version 3.9)") static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFunction *f)
221d71ae5a4SJacob Faibussowitsch {
2229371c9d4SSatish Balay   return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f);
2239371c9d4SSatish Balay }
2249989ab13SBarry Smith 
2254222ddf1SHong Zhang /*E
2264222ddf1SHong Zhang     MatProductType - indicates what type of matrix product is requested
2274222ddf1SHong Zhang 
2282ef1f0ffSBarry Smith     Values:
2292ef1f0ffSBarry Smith +  `MATPRODUCT_AB` - product of two matrices
2302ef1f0ffSBarry Smith .  `MATPRODUCT_AtB` - product of the transpose of a given matrix with a matrix
2312ef1f0ffSBarry Smith .  `MATPRODUCT_ABt` - product of a matrix with the transpose of another given matrix
2322ef1f0ffSBarry Smith .  `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself
2332ef1f0ffSBarry Smith .  `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix
2342ef1f0ffSBarry Smith -  `MATPRODUCT_ABC` - the product of three matrices
2352ef1f0ffSBarry Smith 
23616a05f60SBarry Smith     Level: beginner
23716a05f60SBarry Smith 
2382ef1f0ffSBarry Smith .seealso: [](sec_matmatproduct), [](chapter_matrices), `MatProductSetType()`
2394222ddf1SHong Zhang E*/
2409371c9d4SSatish Balay typedef enum {
2419371c9d4SSatish Balay   MATPRODUCT_UNSPECIFIED = 0,
2429371c9d4SSatish Balay   MATPRODUCT_AB,
2439371c9d4SSatish Balay   MATPRODUCT_AtB,
2449371c9d4SSatish Balay   MATPRODUCT_ABt,
2459371c9d4SSatish Balay   MATPRODUCT_PtAP,
2469371c9d4SSatish Balay   MATPRODUCT_RARt,
2479371c9d4SSatish Balay   MATPRODUCT_ABC
2489371c9d4SSatish Balay } MatProductType;
249544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[];
2504222ddf1SHong Zhang 
2514222ddf1SHong Zhang /*J
2524222ddf1SHong Zhang     MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation
2534222ddf1SHong Zhang 
2544222ddf1SHong Zhang    Level: beginner
2554222ddf1SHong Zhang 
2562ef1f0ffSBarry Smith .seealso: [](sec_matmatproduct), [](chapter_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType`
2574222ddf1SHong Zhang J*/
2584222ddf1SHong Zhang typedef const char *MatProductAlgorithm;
2593e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT         "default"
2603e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED          "sorted"
2613e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE        "scalable"
2623e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST    "scalable_fast"
2633e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP            "heap"
2643e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP           "btheap"
2653e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED     "llcondensed"
2663e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE        "rowmerge"
2673e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT    "outerproduct"
2683e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB             "at*b"
2693e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP             "rap"
2703e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE     "nonscalable"
2713e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI          "seqmpi"
2723e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND         "backend"
2733e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING     "overlapping"
2743e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED          "merged"
2753e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE       "allatonce"
2763e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged"
2773e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV      "allgatherv"
2783e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC          "cyclic"
2793e662e0bSHong Zhang #if defined(PETSC_HAVE_HYPRE)
2803e662e0bSHong Zhang   #define MATPRODUCTALGORITHMHYPRE "hypre"
2813e662e0bSHong Zhang #endif
2824222ddf1SHong Zhang 
2834222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *);
2844222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat);
2854222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType);
2864222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm);
2874222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal);
2884222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat);
2894222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat);
2904222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat);
2914222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat);
2924417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat);
2936718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer);
294c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *);
295c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *);
2964222ddf1SHong Zhang 
297c06d978dSMatthew Knepley /* Logging support */
2980700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */
299014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID;
300335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID;
301014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID;
302014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID;
303014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID;
304014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID;
305014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID;
306014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID;
307c06d978dSMatthew Knepley 
308ceb03754SKris Buschelman /*E
3092ef1f0ffSBarry Smith     MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions
310cf37664fSBarry Smith      are to be reused to store the new matrix values.
311cf37664fSBarry Smith 
3122ef1f0ffSBarry Smith    Values:
3132ef1f0ffSBarry Smith +  `MAT_INITIAL_MATRIX` - create a new matrix
3142ef1f0ffSBarry Smith .  `MAT_REUSE_MATRIX` - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX`
3152ef1f0ffSBarry Smith .  `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions)
3162ef1f0ffSBarry Smith -  `MAT_IGNORE_MATRIX` - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions)
317ceb03754SKris Buschelman 
318ceb03754SKris Buschelman     Level: beginner
319ceb03754SKris Buschelman 
3202ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()`
321ceb03754SKris Buschelman E*/
3229371c9d4SSatish Balay typedef enum {
3239371c9d4SSatish Balay   MAT_INITIAL_MATRIX,
3249371c9d4SSatish Balay   MAT_REUSE_MATRIX,
3259371c9d4SSatish Balay   MAT_IGNORE_MATRIX,
3269371c9d4SSatish Balay   MAT_INPLACE_MATRIX
3279371c9d4SSatish Balay } MatReuse;
328ceb03754SKris Buschelman 
3295494a064SHong Zhang /*E
3302ef1f0ffSBarry Smith     MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()`
3312ef1f0ffSBarry Smith      include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`.
3325494a064SHong Zhang 
3332ef1f0ffSBarry Smith     Level: developer
3345494a064SHong Zhang 
3352ef1f0ffSBarry Smith     Values:
3362ef1f0ffSBarry Smith +  `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values
3372ef1f0ffSBarry Smith -  `MAT_GET_VALUES` - copy the matrix values
3382ef1f0ffSBarry Smith 
3392ef1f0ffSBarry Smith     Developer Note:
3402ef1f0ffSBarry Smith     Why is not just a boolean used for this information?
3412ef1f0ffSBarry Smith 
3422ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()`
3435494a064SHong Zhang E*/
3449371c9d4SSatish Balay typedef enum {
3459371c9d4SSatish Balay   MAT_DO_NOT_GET_VALUES,
3469371c9d4SSatish Balay   MAT_GET_VALUES
3479371c9d4SSatish Balay } MatCreateSubMatrixOption;
3485494a064SHong Zhang 
349607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void);
350c06d978dSMatthew Knepley 
351014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *);
352014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt);
35319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType);
3540d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *);
3550d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType);
356014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat);
357fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]);
358bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat));
35923bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]);
360014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]);
36126cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]);
36226cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]);
363014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]);
364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]);
36584d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool);
366f69a0ea3SMatthew Knepley 
367140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList;
368140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList;
369140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList;
37028988994SBarry Smith 
3713b224e63SBarry Smith /*E
372aa6c7ce3SBarry Smith     MatStructure - Indicates if two matrices have the same nonzero structure
3733b224e63SBarry Smith 
3742ef1f0ffSBarry Smith    Values:
3752ef1f0ffSBarry Smith +  `SAME_NONZERO_PATTERN`  - the two matrices have identical nonzero patterns
3762ef1f0ffSBarry Smith .  `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns
3772ef1f0ffSBarry Smith .  `SUBSET_NONZERO_PATTERN` - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix
3782ef1f0ffSBarry Smith -  `UNKNOWN_NONZERO_PATTERN` - there is no known relationship between the nonzero patterns. In this case the implementations
3792ef1f0ffSBarry Smith                                may try to detect a relationship to optimize the operation
380531d0c6aSBarry Smith 
38116a05f60SBarry Smith     Level: beginner
38216a05f60SBarry Smith 
3832ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()`
3843b224e63SBarry Smith E*/
3859371c9d4SSatish Balay typedef enum {
3869371c9d4SSatish Balay   DIFFERENT_NONZERO_PATTERN,
3879371c9d4SSatish Balay   SUBSET_NONZERO_PATTERN,
3889371c9d4SSatish Balay   SAME_NONZERO_PATTERN,
3899371c9d4SSatish Balay   UNKNOWN_NONZERO_PATTERN
3909371c9d4SSatish Balay } MatStructure;
391d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[];
3923b224e63SBarry Smith 
3939779e05dSSatish Balay #if defined                 PETSC_HAVE_MKL_SPARSE
394ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
395ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
39680095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
397ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
39880095d54SIrina Sokolova #endif
399cd929ea3SAlp Dener 
400d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
401d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
402d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]);
403d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
40480095d54SIrina Sokolova 
405014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
406014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
407014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
408014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
409014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4108f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4116a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]);
412014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *);
4133b00a383SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *);
4143b00a383SHong Zhang 
415014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
416014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
417014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4187e8381f9SStefano Zampini 
419e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]);
42082a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]);
4217e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode);
422d21a29f3SJed Brown 
423014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *);
424014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
425d21a29f3SJed Brown 
426014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
427014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
42838f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
429014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4304cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]);
431dfb205c3SBarry Smith 
432014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *);
433c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *);
434014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *);
435c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *);
436986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *);
437267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *);
438c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *);
439014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
440014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
441c0cdd4a1SDahai Guo 
442014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *);
443014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter);
444014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *);
445014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *);
446014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat);
447014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat);
4489371c9d4SSatish Balay typedef enum {
4499371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_RIGHT,
4509371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_LEFT
4519371c9d4SSatish Balay } MatCompositeMergeType;
4528c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType);
453014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *);
4549371c9d4SSatish Balay typedef enum {
4559371c9d4SSatish Balay   MAT_COMPOSITE_ADDITIVE,
4569371c9d4SSatish Balay   MAT_COMPOSITE_MULTIPLICATIVE
4579371c9d4SSatish Balay } MatCompositeType;
458014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType);
4596dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *);
4603b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure);
4613b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *);
4626d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *);
4638b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *);
46403049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *);
4656d7c1e57SBarry Smith 
46619fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *);
467014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *);
468dedccee8SHong Zhang 
469014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *);
4708060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *);
471d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *);
47206511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *);
473fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *);
47465f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *);
47554e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *);
47654e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS);
477014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *);
4783423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *);
4791472f72bSBarry Smith 
480978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE)
481d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
482978814f1SStefano Zampini #endif
483978814f1SStefano Zampini 
484014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]);
485ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]);
4861d6018f0SLisandro Dalcin 
487846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat);
488014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat);
489014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *);
490e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *);
49121c89e3eSBarry Smith 
492014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat);
493014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat);
494014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat);
495014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *);
496014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *);
497713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **);
4980da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *);
499479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat);
5008a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *);
50199cafbc1SBarry Smith 
502014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
5038a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode);
504014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
505014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]);
506014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]);
507014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]);
50873a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom);
50984cb2905SBarry Smith 
5102ef4de8bSBarry Smith /*S
5112ef1f0ffSBarry Smith      MatStencil - Data structure (C struct) for storing information about rows and
5122ef1f0ffSBarry Smith         columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()`
51362ef0227SBarry Smith 
5142ef1f0ffSBarry Smith    Level: beginner
5152ef1f0ffSBarry Smith 
5162ef1f0ffSBarry Smith    Notes:
51762ef0227SBarry Smith    The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored).
51887497f52SBarry Smith    The c represents the the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored.
51962ef0227SBarry Smith 
52087497f52SBarry Smith    For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`.
521be479b30SJed Brown 
5222ef1f0ffSBarry Smith    For staggered grids, see `DMStagStencil`
5232ef4de8bSBarry Smith 
5242ef1f0ffSBarry Smith    Fortran Note:
5252ef1f0ffSBarry Smith    See `MatSetValuesStencil()` for details.
5262ef4de8bSBarry Smith 
5272ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`,
5282ef1f0ffSBarry Smith           `DMStagStencil`
5292ef4de8bSBarry Smith S*/
530435da068SBarry Smith typedef struct {
531c1ac3661SBarry Smith   PetscInt k, j, i, c;
532435da068SBarry Smith } MatStencil;
5332ef4de8bSBarry Smith 
534014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
535014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
536014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt);
537435da068SBarry Smith 
538d91e6319SBarry Smith /*E
5392ef1f0ffSBarry Smith     MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use
540d91e6319SBarry Smith 
5412ef1f0ffSBarry Smith     Values:
5422ef1f0ffSBarry Smith +   `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix
5432ef1f0ffSBarry Smith -   `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted
5442ef1f0ffSBarry Smith 
54516a05f60SBarry Smith     Level: beginner
54616a05f60SBarry Smith 
5472ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()`
548d91e6319SBarry Smith E*/
5499371c9d4SSatish Balay typedef enum {
5509371c9d4SSatish Balay   MAT_FLUSH_ASSEMBLY = 1,
5519371c9d4SSatish Balay   MAT_FINAL_ASSEMBLY = 0
5529371c9d4SSatish Balay } MatAssemblyType;
553014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType);
554014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType);
555014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *);
5564f9c727eSBarry Smith 
557d91e6319SBarry Smith /*E
5582ef1f0ffSBarry Smith     MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage
559d91e6319SBarry Smith 
560d91e6319SBarry Smith     Level: beginner
561d91e6319SBarry Smith 
5622ef1f0ffSBarry Smith    Note:
5632ef1f0ffSBarry Smith    See `MatSetOption()` for the use of the options
5642ef1f0ffSBarry Smith 
5652ef1f0ffSBarry Smith    Developer Note:
56695452b02SPatrick Sanan    Entries that are negative need not be called collectively by all processes.
567382164b0SBarry Smith 
5682ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatSetOption()`
569d91e6319SBarry Smith E*/
5709371c9d4SSatish Balay typedef enum {
5719371c9d4SSatish Balay   MAT_OPTION_MIN                  = -3,
572c5e4d11fSDmitry Karpeev   MAT_UNUSED_NONZERO_LOCATION_ERR = -2,
57392d4d306SBarry Smith   MAT_ROW_ORIENTED                = -1,
574382164b0SBarry Smith   MAT_SYMMETRIC                   = 1,
575382164b0SBarry Smith   MAT_STRUCTURALLY_SYMMETRIC      = 2,
5768c78258cSHong Zhang   MAT_FORCE_DIAGONAL_ENTRIES      = 3,
577382164b0SBarry Smith   MAT_IGNORE_OFF_PROC_ENTRIES     = 4,
578382164b0SBarry Smith   MAT_USE_HASH_TABLE              = 5,
579382164b0SBarry Smith   MAT_KEEP_NONZERO_PATTERN        = 6,
580382164b0SBarry Smith   MAT_IGNORE_ZERO_ENTRIES         = 7,
581382164b0SBarry Smith   MAT_USE_INODES                  = 8,
582382164b0SBarry Smith   MAT_HERMITIAN                   = 9,
583382164b0SBarry Smith   MAT_SYMMETRY_ETERNAL            = 10,
584c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_LOCATION_ERR    = 11,
585382164b0SBarry Smith   MAT_IGNORE_LOWER_TRIANGULAR     = 12,
586382164b0SBarry Smith   MAT_ERROR_LOWER_TRIANGULAR      = 13,
587382164b0SBarry Smith   MAT_GETROW_UPPERTRIANGULAR      = 14,
588382164b0SBarry Smith   MAT_SPD                         = 15,
58992d4d306SBarry Smith   MAT_NO_OFF_PROC_ZERO_ROWS       = 16,
59092d4d306SBarry Smith   MAT_NO_OFF_PROC_ENTRIES         = 17,
59192d4d306SBarry Smith   MAT_NEW_NONZERO_LOCATIONS       = 18,
592c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_ALLOCATION_ERR  = 19,
593c5e4d11fSDmitry Karpeev   MAT_SUBSET_OFF_PROC_ENTRIES     = 20,
594c10200c1SHong Zhang   MAT_SUBMAT_SINGLEIS             = 21,
595957cac9fSHong Zhang   MAT_STRUCTURE_ONLY              = 22,
596071fcb05SBarry Smith   MAT_SORTED_FULL                 = 23,
5971a2c6b5cSJunchao Zhang   MAT_FORM_EXPLICIT_TRANSPOSE     = 24,
598b94d7dedSBarry Smith   MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25,
599b94d7dedSBarry Smith   MAT_SPD_ETERNAL                 = 26,
6009371c9d4SSatish Balay   MAT_OPTION_MAX                  = 27
6019371c9d4SSatish Balay } MatOption;
602e057df02SPaul Mullowney 
6030f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions;
604014dd563SJed Brown PETSC_EXTERN PetscErrorCode     MatSetOption(Mat, MatOption, PetscBool);
6057d68702bSBarry Smith PETSC_EXTERN PetscErrorCode     MatGetOption(Mat, MatOption, PetscBool *);
606856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode     MatPropagateSymmetryOptions(Mat, Mat);
60719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode     MatGetType(Mat, MatType *);
60884cb2905SBarry Smith 
609014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
610014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
611014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
612014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRowUpperTriangular(Mat);
613014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRowUpperTriangular(Mat);
614014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetColumnVector(Mat, Vec, PetscInt);
6158c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArray(Mat, PetscScalar *[]);
6168f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]);
617d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]);
6188c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArray(Mat, PetscScalar *[]);
6198f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]);
620d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]);
62121e72a00SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *);
622bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
6234099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetType(Mat, MatType);
624ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode    MatSeqAIJKron(Mat, Mat, MatReuse, Mat *);
625388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode    MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *));
6264099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList;
627cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJGetArray(Mat, PetscScalar *[]);
628cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJRestoreArray(Mat, PetscScalar *[]);
6298397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJGetArray(Mat, PetscScalar *[]);
6308397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]);
6318c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArray(Mat, PetscScalar *[]);
6328c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArray(Mat, PetscScalar *[]);
633d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDensePlaceArray(Mat, const PetscScalar[]);
634d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseReplaceArray(Mat, const PetscScalar[]);
635d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseResetArray(Mat);
6368572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArrayRead(Mat, const PetscScalar *[]);
6378572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayRead(Mat, const PetscScalar *[]);
6386947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWrite(Mat, PetscScalar *[]);
6396947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWrite(Mat, PetscScalar *[]);
640cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *);
641cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]);
642cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *);
643cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]);
644cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *);
645cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]);
646014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSize(Mat, PetscInt *);
647014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSize(Mat, PetscInt);
648014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSizes(Mat, PetscInt *, PetscInt *);
649014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizes(Mat, PetscInt, PetscInt);
65033d57670SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizesFromMats(Mat, Mat, Mat);
6510da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode    MatSetVariableBlockSizes(Mat, PetscInt, PetscInt *);
6520da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode    MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt **);
6530da83c2eSBarry Smith 
65486aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]);
65586aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]);
6566947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *);
6576947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *);
6586947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *);
6596947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *);
6606947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *);
6616947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *);
662a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
6635ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *);
6641620fd73SBarry Smith 
665014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec);
666014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec);
667014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec);
668014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec);
669014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec);
670014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *);
671014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *);
672014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec);
673014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec);
674014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat);
675bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat);
676eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat);
677f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec);
678f5edf698SHong Zhang 
679d91e6319SBarry Smith /*E
680d91e6319SBarry Smith     MatDuplicateOption - Indicates if a duplicated sparse matrix should have
681d91e6319SBarry Smith   its numerical values copied over or just its nonzero structure.
682d91e6319SBarry Smith 
6832ef1f0ffSBarry Smith     Values:
6842ef1f0ffSBarry Smith +   `MAT_DO_NOT_COPY_VALUES`    - Create a matrix using the same nonzero pattern as the original matrix,
6852ef1f0ffSBarry Smith                                with zeros for the numerical values
6862ef1f0ffSBarry Smith .   `MAT_COPY_VALUES`           - Create a matrix with the same nonzero pattern as the original matrix
6872ef1f0ffSBarry Smith                                and with the same numerical values.
6882ef1f0ffSBarry Smith -   `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix
6892ef1f0ffSBarry Smith                                and does not copy it, using zeros for the numerical values. The parent and
6902ef1f0ffSBarry Smith                                child matrices will share their index (i and j) arrays, and you cannot
6912ef1f0ffSBarry Smith                                insert new nonzero entries into either matrix
6920018da39SRichard Tran Mills 
69316a05f60SBarry Smith     Level: beginner
69416a05f60SBarry Smith 
69587497f52SBarry Smith   Note:
69687497f52SBarry Smith   Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in
69787497f52SBarry Smith   this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified.
69870dcbbb9SBarry Smith 
6992ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatDuplicate()`
700d91e6319SBarry Smith E*/
7019371c9d4SSatish Balay typedef enum {
7029371c9d4SSatish Balay   MAT_DO_NOT_COPY_VALUES,
7039371c9d4SSatish Balay   MAT_COPY_VALUES,
7049371c9d4SSatish Balay   MAT_SHARE_NONZERO_PATTERN
7059371c9d4SSatish Balay } MatDuplicateOption;
7062e8a6d31SBarry Smith 
70719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *);
708014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *);
70994a9d846SBarry Smith 
710014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure);
711014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer);
712014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *);
713014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *);
714014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *);
715014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *);
716014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *);
717b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *);
718b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *);
719014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *);
720014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer);
7217b80b807SBarry Smith 
7221a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7231a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7241a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7251a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
726d4fbbf0eSBarry Smith 
727d91e6319SBarry Smith /*S
72887497f52SBarry Smith      MatInfo - Context of matrix information, used with `MatGetInfo()`
729d91e6319SBarry Smith 
730d91e6319SBarry Smith    Level: intermediate
731d91e6319SBarry Smith 
7322ef1f0ffSBarry Smith    Fortran Note:
7332ef1f0ffSBarry Smith    Information is stored as a double-precision array of dimension `MAT_INFO_SIZE`
7342ef1f0ffSBarry Smith 
7352ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatGetInfo()`, `MatInfoType`
736d91e6319SBarry Smith S*/
7374e220ebcSLois Curfman McInnes typedef struct {
738b0a32e0cSBarry Smith   PetscLogDouble block_size;                          /* block size */
739b0a32e0cSBarry Smith   PetscLogDouble nz_allocated, nz_used, nz_unneeded;  /* number of nonzeros */
740b0a32e0cSBarry Smith   PetscLogDouble memory;                              /* memory allocated */
741b0a32e0cSBarry Smith   PetscLogDouble assemblies;                          /* number of matrix assemblies called */
742b0a32e0cSBarry Smith   PetscLogDouble mallocs;                             /* number of mallocs during MatSetValues() */
743b0a32e0cSBarry Smith   PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */
744b0a32e0cSBarry Smith   PetscLogDouble factor_mallocs;                      /* number of mallocs during factorization */
7454e220ebcSLois Curfman McInnes } MatInfo;
7464e220ebcSLois Curfman McInnes 
747d9274352SBarry Smith /*E
748d9274352SBarry Smith     MatInfoType - Indicates if you want information about the local part of the matrix,
749d9274352SBarry Smith      the entire parallel matrix or the maximum over all the local parts.
750d9274352SBarry Smith 
7512ef1f0ffSBarry Smith     Values:
7522ef1f0ffSBarry Smith +   `MAT_LOCAL` - values for each MPI process part of the matrix
7532ef1f0ffSBarry Smith .   `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes
7542ef1f0ffSBarry Smith -   `MAT_GLOBAL_SUM` - sum of each value over all MPI processes
755d9274352SBarry Smith 
75616a05f60SBarry Smith     Level: beginner
75716a05f60SBarry Smith 
7582ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatGetInfo()`, `MatInfo`
759d9274352SBarry Smith E*/
7609371c9d4SSatish Balay typedef enum {
7619371c9d4SSatish Balay   MAT_LOCAL      = 1,
7629371c9d4SSatish Balay   MAT_GLOBAL_MAX = 2,
7639371c9d4SSatish Balay   MAT_GLOBAL_SUM = 3
7649371c9d4SSatish Balay } MatInfoType;
765014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *);
766014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec);
767014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]);
768014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]);
769014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]);
770014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]);
771014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec);
772014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *);
7737fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *);
7747fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat);
775014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *);
776014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *);
777014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec);
778014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode);
779a52676ecSHong Zhang 
780014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *);
781014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *);
782014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *);
783014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
784014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
785e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
786e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
787a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
788a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
789cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
7904222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
791447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
79286919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *);
7937b80b807SBarry Smith 
794014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *);
795014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *);
796857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *);
797857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *);
798857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *);
799857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *);
800857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *);
801857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *);
802857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *);
803014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat);
8041b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat);
805014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
806014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec);
807014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
808014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
809014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
810014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec);
8117b80b807SBarry Smith 
812014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *);
813014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *);
814014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *);
815014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **);
816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *);
817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **);
818566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *);
8195ef9f2a5SBarry Smith 
8207dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
821d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatrices() (since version 3.8)") static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
822d71ae5a4SJacob Faibussowitsch {
8239371c9d4SSatish Balay   return MatCreateSubMatrices(mat, n, irow, icol, scall, submat);
8249371c9d4SSatish Balay }
8257dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
826d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatricesMPI() (since version 3.8)") static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
827d71ae5a4SJacob Faibussowitsch {
8289371c9d4SSatish Balay   return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat);
8299371c9d4SSatish Balay }
830014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]);
831df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]);
8327dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *);
833d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateSubMatrix() (since version 3.8)") static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat)
834d71ae5a4SJacob Faibussowitsch {
8359371c9d4SSatish Balay   return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat);
8369371c9d4SSatish Balay }
837014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *);
838014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *);
839014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *);
840014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *);
8417b80b807SBarry Smith 
842014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *);
843014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *);
844014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat);
845014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *);
8468a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *);
847014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
848ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *);
849f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *);
850014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *);
851014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]);
8528efafbd8SBarry Smith 
853014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt);
854aa1e27eaSFande Kong PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov);
855d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool);
8567b80b807SBarry Smith 
857014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
85822440eb1SKris Buschelman 
8597bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
8602df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
8617bab7c10SHong Zhang 
862014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *);
863014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *);
86422440eb1SKris Buschelman 
865014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
866014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *);
867bc011b1eSHong Zhang 
868014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure);
869014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure);
8701c741599SHong Zhang 
871014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar);
872014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar);
8737b80b807SBarry Smith 
874014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping);
875014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
876a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *);
87781fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout);
878014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
879014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
880014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
881014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
882e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
883014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
884014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
885052efed2SBarry Smith 
886014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt);
887014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *);
88890f02eecSBarry Smith 
889014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec);
890014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec);
891014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec);
89230b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *);
89330b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *);
89430b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *);
8952a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *);
896d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatCreateVecs() (since version 3.6)") static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y)
897d71ae5a4SJacob Faibussowitsch {
8989371c9d4SSatish Balay   return MatCreateVecs(mat, x, y);
8999371c9d4SSatish Balay }
90053cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *);
901014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *);
902014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *);
9033a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *);
9049c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *);
905bd481603SBarry Smith 
906bd481603SBarry Smith /*MC
9071620fd73SBarry Smith    MatSetValue - Set a single entry into a matrix.
9081620fd73SBarry Smith 
90920f4b53cSBarry Smith    Not Collective
9101620fd73SBarry Smith 
911a9834a7dSSatish Balay    Synopsis:
912a9834a7dSSatish Balay      #include <petscmat.h>
913a9834a7dSSatish Balay      PetscErrorCode MatSetValue(Mat m,PetscInt row,PetscInt col,PetscScalar value,InsertMode mode)
914a9834a7dSSatish Balay 
9151620fd73SBarry Smith    Input Parameters:
9161620fd73SBarry Smith +  m - the matrix
91716a05f60SBarry Smith .  i - the row location of the entry
91816a05f60SBarry Smith .  j - the column location of the entry
91916a05f60SBarry Smith .  va - the value to insert
92087497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
9211620fd73SBarry Smith 
9221620fd73SBarry Smith    Level: beginner
9231620fd73SBarry Smith 
9242ef1f0ffSBarry Smith    Note:
9252ef1f0ffSBarry Smith    For efficiency one should use `MatSetValues()` and set several values simultaneously.
9262ef1f0ffSBarry Smith 
9272ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `InsertMode`, `MatGetValue()`, `MatSetValues()`,
9282ef1f0ffSBarry Smith           `MatSetValueLocal()`, `MatSetValuesLocal()`
9291620fd73SBarry Smith M*/
93016a05f60SBarry Smith static inline PetscErrorCode MatSetValue(Mat m, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
931d71ae5a4SJacob Faibussowitsch {
93216a05f60SBarry Smith   return MatSetValues(m, 1, &i, 1, &j, &va, mode);
9339371c9d4SSatish Balay }
9341620fd73SBarry Smith 
935e5e5a7b5SPatrick Sanan /*@C
936e5e5a7b5SPatrick Sanan    MatGetValue - Gets a single value from a matrix
9371620fd73SBarry Smith 
938e5e5a7b5SPatrick Sanan    Not Collective; can only return a value owned by the given process
939e5e5a7b5SPatrick Sanan 
940e5e5a7b5SPatrick Sanan    Input Parameters:
941e5e5a7b5SPatrick Sanan +  mat - the matrix
942e5e5a7b5SPatrick Sanan .  row - the row location of the entry
943e5e5a7b5SPatrick Sanan -  col - the column location of the entry
944e5e5a7b5SPatrick Sanan 
945e5e5a7b5SPatrick Sanan    Output Parameter:
946e5e5a7b5SPatrick Sanan .  va - the value
947e5e5a7b5SPatrick Sanan 
9482ef1f0ffSBarry Smith    Level: advanced
9492ef1f0ffSBarry Smith 
950e5e5a7b5SPatrick Sanan    Notes:
9512ef1f0ffSBarry Smith    The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd` before this call
9522ef1f0ffSBarry Smith 
95387497f52SBarry Smith    For efficiency one should use `MatGetValues()` and get several values simultaneously.
954e5e5a7b5SPatrick Sanan 
95587497f52SBarry Smith    See notes for `MatGetValues()`.
956e5e5a7b5SPatrick Sanan 
9572ef1f0ffSBarry Smith .seealso: [](chapter_matrices),  `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()`
958e5e5a7b5SPatrick Sanan @*/
959d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va)
960d71ae5a4SJacob Faibussowitsch {
9619371c9d4SSatish Balay   return MatGetValues(mat, 1, &row, 1, &col, va);
9629371c9d4SSatish Balay }
963e5e5a7b5SPatrick Sanan 
964e5e5a7b5SPatrick Sanan /*MC
9652ef1f0ffSBarry Smith    MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes.
966e5e5a7b5SPatrick Sanan 
967e5e5a7b5SPatrick Sanan    Not Collective
968e5e5a7b5SPatrick Sanan 
969e5e5a7b5SPatrick Sanan    Input Parameters:
970e5e5a7b5SPatrick Sanan +  m - the matrix
97116a05f60SBarry Smith .  i - the row location of the entry
97216a05f60SBarry Smith .  j - the column location of the entry
97316a05f60SBarry Smith .  va - the value to insert
97487497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
975e5e5a7b5SPatrick Sanan 
9762ef1f0ffSBarry Smith    Level: intermediate
9772ef1f0ffSBarry Smith 
978e5e5a7b5SPatrick Sanan    Notes:
97987497f52SBarry Smith    For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously.
980e5e5a7b5SPatrick Sanan 
98187497f52SBarry Smith    See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used.
982e5e5a7b5SPatrick Sanan 
9832ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatSetValue()`, `MatSetValuesLocal()`
984e5e5a7b5SPatrick Sanan M*/
98516a05f60SBarry Smith static inline PetscErrorCode MatSetValueLocal(Mat m, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
986d71ae5a4SJacob Faibussowitsch {
98716a05f60SBarry Smith   return MatSetValuesLocal(m, 1, &i, 1, &j, &va, mode);
9889371c9d4SSatish Balay }
9891620fd73SBarry Smith 
9901620fd73SBarry Smith /*MC
991d0609cedSBarry Smith    MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per
992bd481603SBarry Smith        row in a matrix providing the data that one can use to correctly preallocate the matrix.
993bd481603SBarry Smith 
994bd481603SBarry Smith    Synopsis:
995aaa7dc30SBarry Smith    #include <petscmat.h>
996d0609cedSBarry Smith    PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz)
997bd481603SBarry Smith 
998d083f849SBarry Smith    Collective
999bd481603SBarry Smith 
1000bd481603SBarry Smith    Input Parameters:
1001bd481603SBarry Smith +  comm - the communicator that will share the eventually allocated matrix
1002859fcb39SBarry Smith .  nrows - the number of LOCAL rows in the matrix
1003859fcb39SBarry Smith -  ncols - the number of LOCAL columns in the matrix
1004bd481603SBarry Smith 
1005bd481603SBarry Smith    Output Parameters:
1006bd481603SBarry Smith +  dnz - the array that will be passed to the matrix preallocation routines
1007a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1008bd481603SBarry Smith 
10092ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1010bd481603SBarry Smith 
1011bd481603SBarry Smith    Notes:
10122ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
10132ef1f0ffSBarry Smith    the use of this routine
10142ef1f0ffSBarry Smith 
1015d0609cedSBarry Smith    This is a macro that handles its own error checking, it does not return an error code.
1016d0609cedSBarry Smith 
10172ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1018bd481603SBarry Smith 
10192ef1f0ffSBarry Smith    Developer Note:
10202ef1f0ffSBarry Smith     This is a MACRO not a function because it has a leading { that is closed by `PetscPreallocateFinalize()`.
1021bd481603SBarry Smith 
10222ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1023db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1024bd481603SBarry Smith M*/
10259371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \
10269371c9d4SSatish Balay   do { \
10273ba16761SJacob Faibussowitsch     PetscInt              __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \
10283ba16761SJacob Faibussowitsch     PetscInt PETSC_UNUSED __start; \
10299566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \
10309566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \
10319371c9d4SSatish Balay     __start = __end - __ncols; \
10329371c9d4SSatish Balay     (void)__start; \
10339566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \
10345f80ce2aSJacob Faibussowitsch   __rstart -= __nrows
10357c922b88SBarry Smith 
1036d0609cedSBarry Smith #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO("GCC warning \"Use MatPreallocateBegin() (since version 3.18)\"") MatPreallocateBegin(__VA_ARGS__)
1037d0609cedSBarry Smith 
1038bd481603SBarry Smith /*MC
1039bd481603SBarry Smith    MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1040bd481603SBarry Smith        inserted using a local number of the rows and columns
1041bd481603SBarry Smith 
1042bd481603SBarry Smith    Synopsis:
1043aaa7dc30SBarry Smith    #include <petscmat.h>
1044c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1045bd481603SBarry Smith 
1046bd481603SBarry Smith    Not Collective
1047bd481603SBarry Smith 
1048bd481603SBarry Smith    Input Parameters:
1049784ac674SJed Brown +  map - the row mapping from local numbering to global numbering
1050bd481603SBarry Smith .  nrows - the number of rows indicated
10511d73ed98SBarry Smith .  rows - the indices of the rows
1052784ac674SJed Brown .  cmap - the column mapping from local to global numbering
1053bd481603SBarry Smith .  ncols - the number of columns in the matrix
1054bd481603SBarry Smith .  cols - the columns indicated
1055bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1056a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1057bd481603SBarry Smith 
10582ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1059bd481603SBarry Smith 
1060bd481603SBarry Smith    Notes:
10612ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
10622ef1f0ffSBarry Smith    the use of this routine
1063bd481603SBarry Smith 
10642ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1065bd481603SBarry Smith 
10662ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1067db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()`
1068bd481603SBarry Smith M*/
106994bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
10709371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1071c4f061fbSSatish Balay 
1072bd481603SBarry Smith /*MC
1073c1154cd5SBarry Smith    MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1074c1154cd5SBarry Smith        inserted using a local number of the rows and columns. This version removes any duplicate columns in cols
1075c1154cd5SBarry Smith 
1076c1154cd5SBarry Smith    Synopsis:
1077c1154cd5SBarry Smith    #include <petscmat.h>
1078c1154cd5SBarry Smith    PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1079c1154cd5SBarry Smith 
1080c1154cd5SBarry Smith    Not Collective
1081c1154cd5SBarry Smith 
1082c1154cd5SBarry Smith    Input Parameters:
1083c1154cd5SBarry Smith +  map - the row mapping from local numbering to global numbering
1084c1154cd5SBarry Smith .  nrows - the number of rows indicated
1085c1154cd5SBarry Smith .  rows - the indices of the rows (these values are mapped to the global values)
1086c1154cd5SBarry Smith .  cmap - the column mapping from local to global numbering
1087c1154cd5SBarry Smith .  ncols - the number of columns in the matrix   (this value will be changed if duplicate columns are found)
1088c1154cd5SBarry Smith .  cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed)
1089c1154cd5SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1090a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1091c1154cd5SBarry Smith 
10922ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1093c1154cd5SBarry Smith 
1094c1154cd5SBarry Smith    Notes:
10952ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
10962ef1f0ffSBarry Smith    the use of this routine
1097c1154cd5SBarry Smith 
10982ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1099c1154cd5SBarry Smith 
11002ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1101db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1102c1154cd5SBarry Smith M*/
110394bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11049371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1105c1154cd5SBarry Smith 
1106c1154cd5SBarry Smith /*MC
1107d6e23781SBarry Smith    MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1108bd481603SBarry Smith        inserted using a local number of the rows and columns
1109bd481603SBarry Smith 
1110bd481603SBarry Smith    Synopsis:
1111aaa7dc30SBarry Smith    #include <petscmat.h>
1112d6e23781SBarry Smith    PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1113d6e23781SBarry Smith 
1114d6e23781SBarry Smith    Not Collective
1115d6e23781SBarry Smith 
1116d6e23781SBarry Smith    Input Parameters:
1117d6e23781SBarry Smith +  map - the row mapping from local numbering to global numbering
1118d6e23781SBarry Smith .  nrows - the number of rows indicated
1119d6e23781SBarry Smith .  rows - the indices of the rows
1120d6e23781SBarry Smith .  cmap - the column mapping from local to global numbering
1121d6e23781SBarry Smith .  ncols - the number of columns in the matrix
1122d6e23781SBarry Smith .  cols - the columns indicated
1123d6e23781SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1124a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1125d6e23781SBarry Smith 
11262ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1127d6e23781SBarry Smith 
1128d6e23781SBarry Smith    Notes:
11292ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11302ef1f0ffSBarry Smith    the use of this routine
1131d6e23781SBarry Smith 
11322ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1133d6e23781SBarry Smith 
11342ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1135db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`
1136d6e23781SBarry Smith M*/
113794bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11389371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1139d6e23781SBarry Smith 
1140d6e23781SBarry Smith /*MC
1141d6e23781SBarry Smith    MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1142d6e23781SBarry Smith        inserted using a local number of the rows and columns
1143d6e23781SBarry Smith 
1144d6e23781SBarry Smith    Synopsis:
1145d6e23781SBarry Smith    #include <petscmat.h>
1146d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1147bd481603SBarry Smith 
1148bd481603SBarry Smith    Not Collective
1149bd481603SBarry Smith 
1150bd481603SBarry Smith    Input Parameters:
1151bd481603SBarry Smith +  map - the mapping between local numbering and global numbering
1152bd481603SBarry Smith .  nrows - the number of rows indicated
11531d73ed98SBarry Smith .  rows - the indices of the rows
1154bd481603SBarry Smith .  ncols - the number of columns in the matrix
1155bd481603SBarry Smith .  cols - the columns indicated
1156bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1157a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1158bd481603SBarry Smith 
11592ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1160bd481603SBarry Smith 
1161bd481603SBarry Smith    Notes:
11622ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11632ef1f0ffSBarry Smith    the use of this routine
1164bd481603SBarry Smith 
11652ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1166bd481603SBarry Smith 
11672ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`
1168db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1169bd481603SBarry Smith M*/
117094bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \
11719371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));)
1172e83a5d19SLisandro Dalcin 
1173bd481603SBarry Smith /*MC
1174bd481603SBarry Smith    MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1175bd481603SBarry Smith        inserted using a local number of the rows and columns
1176bd481603SBarry Smith 
1177bd481603SBarry Smith    Synopsis:
1178aaa7dc30SBarry Smith    #include <petscmat.h>
1179c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1180bd481603SBarry Smith 
1181bd481603SBarry Smith    Not Collective
1182bd481603SBarry Smith 
1183bd481603SBarry Smith    Input Parameters:
118464075487SBarry Smith +  row - the row
1185bd481603SBarry Smith .  ncols - the number of columns in the matrix
1186a50f8bf6SHong Zhang -  cols - the columns indicated
1187a50f8bf6SHong Zhang 
1188a50f8bf6SHong Zhang    Output Parameters:
1189a50f8bf6SHong Zhang +  dnz - the array that will be passed to the matrix preallocation routines
1190a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1191bd481603SBarry Smith 
11922ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1193bd481603SBarry Smith 
1194bd481603SBarry Smith    Notes:
11952ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11962ef1f0ffSBarry Smith    the use of this routine
1197bd481603SBarry Smith 
11982ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1199bd481603SBarry Smith 
1200d0609cedSBarry Smith    This is a MACRO not a function because it uses variables declared in MatPreallocateBegin().
12011620fd73SBarry Smith 
12022ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1203db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1204bd481603SBarry Smith M*/
12059371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \
12069371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \
120764075487SBarry Smith     if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \
1208a6042fd4SStefano Zampini     else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12099371c9d4SSatish Balay   })
12107c922b88SBarry Smith 
1211bd481603SBarry Smith /*MC
1212d6e23781SBarry Smith    MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1213bd481603SBarry Smith        inserted using a local number of the rows and columns
1214bd481603SBarry Smith 
1215bd481603SBarry Smith    Synopsis:
1216aaa7dc30SBarry Smith    #include <petscmat.h>
1217d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1218bd481603SBarry Smith 
1219bd481603SBarry Smith    Not Collective
1220bd481603SBarry Smith 
1221bd481603SBarry Smith    Input Parameters:
1222bd481603SBarry Smith +  nrows - the number of rows indicated
12231d73ed98SBarry Smith .  rows - the indices of the rows
1224bd481603SBarry Smith .  ncols - the number of columns in the matrix
1225bd481603SBarry Smith .  cols - the columns indicated
1226bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1227a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1228bd481603SBarry Smith 
12292ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1230bd481603SBarry Smith 
1231bd481603SBarry Smith    Notes:
12322ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12332ef1f0ffSBarry Smith    the use of this routine
1234bd481603SBarry Smith 
12352ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1236bd481603SBarry Smith 
1237d0609cedSBarry Smith    This is a MACRO not a function because it uses variables declared in MatPreallocateBegin().
12381620fd73SBarry Smith 
12392ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`,
1240db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1241bd481603SBarry Smith M*/
124294bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \
12439371c9d4SSatish Balay   PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \
1244d3d32019SBarry Smith     if (cols[__i] >= __end) onz[row - __rstart]++; \
1245a6042fd4SStefano Zampini     else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12469371c9d4SSatish Balay   })
1247d3d32019SBarry Smith 
1248bd481603SBarry Smith /*MC
1249a6042fd4SStefano Zampini    MatPreallocateLocation -  An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists
125016371a99SBarry Smith 
125116371a99SBarry Smith    Synopsis:
1252aaa7dc30SBarry Smith    #include <petscmat.h>
125316371a99SBarry Smith    PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz)
125416371a99SBarry Smith 
125516371a99SBarry Smith    Not Collective
125616371a99SBarry Smith 
125716371a99SBarry Smith    Input Parameters:
1258a2b725a8SWilliam Gropp +  A - matrix
125916371a99SBarry Smith .  row - row where values exist (must be local to this process)
126016371a99SBarry Smith .  ncols - number of columns
126116371a99SBarry Smith .  cols - columns with nonzeros
126216371a99SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1263a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
126416371a99SBarry Smith 
12652ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
126616371a99SBarry Smith 
126716371a99SBarry Smith    Notes:
12682ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12692ef1f0ffSBarry Smith    the use of this routine
127016371a99SBarry Smith 
12712ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
127216371a99SBarry Smith 
127316371a99SBarry Smith    This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines.
127416371a99SBarry Smith 
12752ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1276db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
127716371a99SBarry Smith M*/
1278d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz))
127916371a99SBarry Smith 
128016371a99SBarry Smith /*MC
1281d0609cedSBarry Smith    MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per
1282bd481603SBarry Smith        row in a matrix providing the data that one can use to correctly preallocate the matrix.
1283bd481603SBarry Smith 
1284bd481603SBarry Smith    Synopsis:
1285aaa7dc30SBarry Smith    #include <petscmat.h>
1286d0609cedSBarry Smith    PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz)
1287bd481603SBarry Smith 
1288d083f849SBarry Smith    Collective
1289bd481603SBarry Smith 
1290bd481603SBarry Smith    Input Parameters:
129116371a99SBarry Smith +  dnz - the array that was be passed to the matrix preallocation routines
1292a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1293bd481603SBarry Smith 
12942ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1295bd481603SBarry Smith 
1296bd481603SBarry Smith    Notes:
12972ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12982ef1f0ffSBarry Smith    the use of this routine
1299d0609cedSBarry Smith 
13002ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1301bd481603SBarry Smith 
13022ef1f0ffSBarry Smith    Developer Note:
1303d0609cedSBarry Smith     This is a MACRO not a function because it closes the { started in MatPreallocateBegin().
13041620fd73SBarry Smith 
13052ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1306db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1307bd481603SBarry Smith M*/
13089371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \
13099371c9d4SSatish Balay   PetscCall(PetscFree2(dnz, onz)); \
13109371c9d4SSatish Balay   } \
13119371c9d4SSatish Balay   while (0)
1312d0609cedSBarry Smith 
1313d0609cedSBarry Smith #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO("GCC warning \"Use MatPreallocateEnd() (since version 3.18)\"") MatPreallocateEnd(__VA_ARGS__)
13147c922b88SBarry Smith 
13157b80b807SBarry Smith /* Routines unique to particular data structures */
1316014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *);
1317698d4c6aSKris Buschelman 
1318014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *);
1319014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *);
1320698d4c6aSKris Buschelman 
1321014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]);
1322014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]);
1323014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1324014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1325014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1326014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool);
13277b80b807SBarry Smith 
1328a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4
1329a96a251dSBarry Smith 
1330014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1331014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1332014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]);
133319b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt);
1334273d9f13SBarry Smith 
1335014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1336014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1337014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1338014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1339014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1340014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1341014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1342014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]);
1343b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *);
1344252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *);
1345014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]);
1346014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]);
13479230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
13489230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
1349014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *);
1350273d9f13SBarry Smith 
135149a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *);
1352ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt);
1353d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatDenseSetLDA() (since version 3.14)") static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda)
1354d71ae5a4SJacob Faibussowitsch {
13559371c9d4SSatish Balay   return MatDenseSetLDA(A, lda);
13569371c9d4SSatish Balay }
1357014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *);
13581b807ce4Svictorle 
1359621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1360621e819fSSatish Balay 
1361014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat);
1362014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat);
13632e8a6d31SBarry Smith 
1364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *);
13657cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *);
13667b80b807SBarry Smith /*
13677b80b807SBarry Smith   These routines are not usually accessed directly, rather solving is
136894b7f48cSBarry Smith   done through the KSP and PC interfaces.
13697b80b807SBarry Smith */
13707b80b807SBarry Smith 
137176bdecfbSBarry Smith /*J
13722ef1f0ffSBarry Smith     MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used
13732ef1f0ffSBarry Smith     to reduce fill in sparse factorizations.
1374d9274352SBarry Smith 
1375d9274352SBarry Smith    Level: beginner
1376d9274352SBarry Smith 
13772c7c0729SBarry Smith    Notes:
137816a05f60SBarry Smith    If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one
137916a05f60SBarry Smith    of its own.
13802c7c0729SBarry Smith 
13812ef1f0ffSBarry Smith    There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()`
13822ef1f0ffSBarry Smith 
13832ef1f0ffSBarry Smith    Developer Note:
13842ef1f0ffSBarry Smith    This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning`
13852ef1f0ffSBarry Smith 
13862ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`,
13872ef1f0ffSBarry Smith           `PCFactorSetOrderingType()`
138876bdecfbSBarry Smith J*/
138919fd82e9SBarry Smith typedef const char *MatOrderingType;
13902692d6eeSBarry Smith #define MATORDERINGNATURAL       "natural"
13912692d6eeSBarry Smith #define MATORDERINGND            "nd"
13922692d6eeSBarry Smith #define MATORDERING1WD           "1wd"
13932692d6eeSBarry Smith #define MATORDERINGRCM           "rcm"
13942692d6eeSBarry Smith #define MATORDERINGQMD           "qmd"
13952692d6eeSBarry Smith #define MATORDERINGROWLENGTH     "rowlength"
1396510184a7SJed Brown #define MATORDERINGWBM           "wbm"
1397fc1bef75SJed Brown #define MATORDERINGSPECTRAL      "spectral"
1398312e372aSBarry Smith #define MATORDERINGAMD           "amd"           /* only works if UMFPACK is installed with PETSc */
1399048412efSPablo Brubeck #define MATORDERINGMETISND       "metisnd"       /* only works if METIS is installed with PETSc */
14009bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */
14012c7c0729SBarry Smith #define MATORDERINGEXTERNAL      "external"      /* uses an ordering type internal to the factorization package */
1402b12f92e5SBarry Smith 
140319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrdering(Mat, MatOrderingType, IS *, IS *);
1404140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrderingList(PetscFunctionList *);
1405bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode    MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *));
1406140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList;
1407d4fbbf0eSBarry Smith 
1408013e2dc7SBarry Smith #include "petscmatcoarsen.h"
1409013e2dc7SBarry Smith 
1410014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS);
1411fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *);
1412a2ce50c7SBarry Smith 
14134ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *);
14144ac6704cSBarry Smith 
1415d91e6319SBarry Smith /*S
14162ef1f0ffSBarry Smith     MatFactorShiftType - Type of numeric shift used for factorizations
1417d90ac83dSHong Zhang 
14182ef1f0ffSBarry Smith    Values:
14192ef1f0ffSBarry Smith +  `MAT_SHIFT_NONE` - do not shift the matrix diagonal entries
14202ef1f0ffSBarry Smith .  `MAT_SHIFT_NONZERO` - shift the entries to be non-zero
14212ef1f0ffSBarry Smith .  `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite
14222ef1f0ffSBarry Smith -  `MAT_SHIFT_INBLOCKS` - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ`
1423d90ac83dSHong Zhang 
14242ef1f0ffSBarry Smith    Level: intermediate
14252ef1f0ffSBarry Smith 
14262ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()`
1427d90ac83dSHong Zhang S*/
14289371c9d4SSatish Balay typedef enum {
14299371c9d4SSatish Balay   MAT_SHIFT_NONE,
14309371c9d4SSatish Balay   MAT_SHIFT_NONZERO,
14319371c9d4SSatish Balay   MAT_SHIFT_POSITIVE_DEFINITE,
14329371c9d4SSatish Balay   MAT_SHIFT_INBLOCKS
14339371c9d4SSatish Balay } MatFactorShiftType;
14346a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[];
14355e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[];
1436d90ac83dSHong Zhang 
1437d90ac83dSHong Zhang /*S
1438ec5066bdSBarry Smith     MatFactorError - indicates what type of error was generated in a matrix factorization
14399aa7eafdSHong Zhang 
14402ef1f0ffSBarry Smith     Values:
14412ef1f0ffSBarry Smith +   `MAT_FACTOR_NOERROR` - there was no error during the factorization
14422ef1f0ffSBarry Smith .   `MAT_FACTOR_STRUCT_ZEROPIVOT` - there was a missing entry in a diagonal location of the matrix
14432ef1f0ffSBarry Smith .   `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization
14442ef1f0ffSBarry Smith .   `MAT_FACTOR_OUTMEMORY` - the factorization has run out of memory
14452ef1f0ffSBarry Smith -   `MAT_FACTOR_OTHER` - some other error has occurred.
14469aa7eafdSHong Zhang 
14472ef1f0ffSBarry Smith     Level: intermediate
144800e125f8SBarry Smith 
14492ef1f0ffSBarry Smith     Note:
14502ef1f0ffSBarry Smith     When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason`
14512ef1f0ffSBarry Smith 
14522ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`,
14532ef1f0ffSBarry Smith           `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason`
14549aa7eafdSHong Zhang S*/
14559371c9d4SSatish Balay typedef enum {
14569371c9d4SSatish Balay   MAT_FACTOR_NOERROR,
14579371c9d4SSatish Balay   MAT_FACTOR_STRUCT_ZEROPIVOT,
14589371c9d4SSatish Balay   MAT_FACTOR_NUMERIC_ZEROPIVOT,
14599371c9d4SSatish Balay   MAT_FACTOR_OUTMEMORY,
14609371c9d4SSatish Balay   MAT_FACTOR_OTHER
14619371c9d4SSatish Balay } MatFactorError;
14629aa7eafdSHong Zhang 
146300e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *);
1464b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat);
14657b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *);
146600e125f8SBarry Smith 
14679aa7eafdSHong Zhang /*S
1468422a814eSBarry Smith    MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization
1469b00f7748SHong Zhang 
1470b00f7748SHong Zhang    Level: developer
1471b00f7748SHong Zhang 
14722ef1f0ffSBarry Smith    Note:
14732ef1f0ffSBarry Smith    You can use `MatFactorInfoInitialize()` to set default values.
1474b00f7748SHong Zhang 
14752ef1f0ffSBarry Smith    Fortran Note:
14762ef1f0ffSBarry Smith    The data is available in a double precision arrays of size `MAT_FACTORINFO_SIZE`
14772ef1f0ffSBarry Smith 
14782ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`,
14792ef1f0ffSBarry Smith           `MatICCFactorSymbolic()`, `MatICCFactor()`,  `MatFactorInfoInitialize()`
1480b00f7748SHong Zhang S*/
1481b00f7748SHong Zhang typedef struct {
148215e8a5b3SHong Zhang   PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */
148385317021SBarry Smith   PetscReal usedt;
148415e8a5b3SHong Zhang   PetscReal dt;            /* drop tolerance */
1485b00f7748SHong Zhang   PetscReal dtcol;         /* tolerance for pivoting */
148615e8a5b3SHong Zhang   PetscReal dtcount;       /* maximum nonzeros to be allowed per row */
148767e28bfeSBarry Smith   PetscReal fill;          /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */
1488348344bbSBarry Smith   PetscReal levels;        /* ICC/ILU(levels) */
1489bcd9e38bSBarry Smith   PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0
1490bcd9e38bSBarry Smith                                    factorization may be faster if do not pivot */
149115e8a5b3SHong Zhang   PetscReal zeropivot;     /* pivot is called zero if less than this */
1492f4db908eSBarry Smith   PetscReal shifttype;     /* type of shift added to matrix factor to prevent zero pivots */
1493f4db908eSBarry Smith   PetscReal shiftamount;   /* how large the shift is */
149415e8a5b3SHong Zhang } MatFactorInfo;
1495ffa6d0a5SLois Curfman McInnes 
1496014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *);
14979a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *);
14989a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
14999a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *);
15009a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *);
15019a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *);
15029a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15039a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15049a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15059a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *);
15069a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *);
15073f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *);
15083f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15093f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *);
1510014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *);
1511014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec);
1512014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec);
1513014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec);
1514014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec);
1515014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec);
1516014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec);
1517014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs);
15187c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat);
15197c2f51b8SStefano Zampini 
15209371c9d4SSatish Balay typedef enum {
15219371c9d4SSatish Balay   MAT_FACTOR_SCHUR_UNFACTORED,
15229371c9d4SSatish Balay   MAT_FACTOR_SCHUR_FACTORED,
15239371c9d4SSatish Balay   MAT_FACTOR_SCHUR_INVERTED
15249371c9d4SSatish Balay } MatFactorSchurStatus;
15258e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS);
15267c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15277c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus);
15285a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat);
15297c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15305a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec);
15315a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec);
15326dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat);
1533bb5a7306SBarry Smith 
15348a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat);
1535d91e6319SBarry Smith /*E
1536d91e6319SBarry Smith     MatSORType - What type of (S)SOR to perform
1537bb1eb677SSatish Balay 
15382ef1f0ffSBarry Smith    Values:
15392ef1f0ffSBarry Smith +  `SOR_FORWARD_SWEEP` - do a sweep from the first row of the matrix to the last
15402ef1f0ffSBarry Smith .  `SOR_BACKWARD_SWEEP` -  do a sweep from the last row to the first
15412ef1f0ffSBarry Smith .  `SOR_SYMMETRIC_SWEEP` - do a sweep from the first row to the last and then back to the first
15422ef1f0ffSBarry Smith .  `SOR_LOCAL_FORWARD_SWEEP` - each MPI rank does its own forward sweep with no communication
15432ef1f0ffSBarry Smith .  `SOR_LOCAL_BACKWARD_SWEEP` - each MPI rank does its own backward sweep with no communication
15442ef1f0ffSBarry Smith .  `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI rank does its own symmetric sweep with no communication
15452ef1f0ffSBarry Smith .  `SOR_ZERO_INITIAL_GUESS` - indicates the initial solution is zero so the sweep can avoid unneeded computation
15462ef1f0ffSBarry Smith .  `SOR_EISENSTAT` - apply the Eisentat application of SOR, see `PCEISENSTAT`
15472ef1f0ffSBarry Smith .  `SOR_APPLY_UPPER` - multiply by the upper triangular portion of the matrix
15482ef1f0ffSBarry Smith -  `SOR_APPLY_LOWER` - multiply by the lower triangular portion of the matrix
15492ef1f0ffSBarry Smith 
1550d91e6319SBarry Smith     Level: beginner
1551d91e6319SBarry Smith 
15522ef1f0ffSBarry Smith    Note:
15532ef1f0ffSBarry Smith    These may be bitwise ORd together
1554d9274352SBarry Smith 
15552ef1f0ffSBarry Smith    Developer Note:
15562ef1f0ffSBarry Smith    Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below
1557d91e6319SBarry Smith 
15582ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatSOR()`
1559d91e6319SBarry Smith E*/
15609371c9d4SSatish Balay typedef enum {
15619371c9d4SSatish Balay   SOR_FORWARD_SWEEP         = 1,
15629371c9d4SSatish Balay   SOR_BACKWARD_SWEEP        = 2,
15639371c9d4SSatish Balay   SOR_SYMMETRIC_SWEEP       = 3,
15649371c9d4SSatish Balay   SOR_LOCAL_FORWARD_SWEEP   = 4,
15659371c9d4SSatish Balay   SOR_LOCAL_BACKWARD_SWEEP  = 8,
15669371c9d4SSatish Balay   SOR_LOCAL_SYMMETRIC_SWEEP = 12,
15679371c9d4SSatish Balay   SOR_ZERO_INITIAL_GUESS    = 16,
15689371c9d4SSatish Balay   SOR_EISENSTAT             = 32,
15699371c9d4SSatish Balay   SOR_APPLY_UPPER           = 64,
15709371c9d4SSatish Balay   SOR_APPLY_LOWER           = 128
15719371c9d4SSatish Balay } MatSORType;
1572014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
15738ed539a5SBarry Smith 
15747086a01eSPeter Brune /*S
15757086a01eSPeter Brune      MatColoring - Object for managing the coloring of matrices.
15767086a01eSPeter Brune 
15777086a01eSPeter Brune    Level: beginner
15787086a01eSPeter Brune 
1579ec5066bdSBarry Smith    Notes:
158087497f52SBarry Smith    Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
158187497f52SBarry Smith    matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors).
1582ec5066bdSBarry Smith 
158387497f52SBarry Smith    Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This
15842ef1f0ffSBarry Smith    same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices.
1585ec5066bdSBarry Smith 
15862ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`,
15872ef1f0ffSBarry Smith           `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`,  `MatColoringSetWeightType()`,
15882ef1f0ffSBarry Smith           `MatColoringSetWeights()`, `MatCoarsenType`,  `MatCoarsen`
15897086a01eSPeter Brune S*/
1590d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring;
1591d4db15c4SBarry Smith 
1592d4db15c4SBarry Smith /*J
1593d4db15c4SBarry Smith     MatColoringType - String with the name of a PETSc matrix coloring
1594d9274352SBarry Smith 
1595d9274352SBarry Smith    Level: beginner
1596d9274352SBarry Smith 
15972ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring`
159876bdecfbSBarry Smith J*/
159919fd82e9SBarry Smith typedef const char *MatColoringType;
16005567d71aSPeter Brune #define MATCOLORINGJP      "jp"
1601b9acb617SPeter Brune #define MATCOLORINGPOWER   "power"
16022692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural"
16032692d6eeSBarry Smith #define MATCOLORINGSL      "sl"
16042692d6eeSBarry Smith #define MATCOLORINGLF      "lf"
16052692d6eeSBarry Smith #define MATCOLORINGID      "id"
16068121bdceSPeter Brune #define MATCOLORINGGREEDY  "greedy"
1607b12f92e5SBarry Smith 
16088ac6da0aSPeter Brune /*E
16092ef1f0ffSBarry Smith    MatColoringWeightType - Type of weight scheme used for the coloring algorithm
16108ac6da0aSPeter Brune 
16112ef1f0ffSBarry Smith     Values:
161287497f52SBarry Smith +   `MAT_COLORING_RANDOM`  - Random weights
161387497f52SBarry Smith .   `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering.
161487497f52SBarry Smith -   `MAT_COLORING_LF`      - Last-first weighting.
16158ac6da0aSPeter Brune 
16168ac6da0aSPeter Brune     Level: intermediate
16178ac6da0aSPeter Brune 
16182ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()`
16198ac6da0aSPeter Brune E*/
16209371c9d4SSatish Balay typedef enum {
16219371c9d4SSatish Balay   MAT_COLORING_WEIGHT_RANDOM,
16229371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LEXICAL,
16239371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LF,
16249371c9d4SSatish Balay   MAT_COLORING_WEIGHT_SL
16259371c9d4SSatish Balay } MatColoringWeightType;
16268ac6da0aSPeter Brune 
1627335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *);
1628d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *);
1629335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *);
1630335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer);
1631335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType);
1632335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring);
1633335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt);
1634335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *);
1635335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt);
1636335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *);
1637335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *);
1638335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring));
1639014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *);
16408ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType);
1641c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *);
16428ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm);
1643bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring);
1644d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatColoringTest() (since version 3.10)") static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring)
1645d71ae5a4SJacob Faibussowitsch {
16469371c9d4SSatish Balay   return MatColoringTest(matcoloring, iscoloring);
16479371c9d4SSatish Balay }
1648bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring);
1649639f9d9dSBarry Smith 
1650d9274352SBarry Smith /*S
165187497f52SBarry Smith      MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring
1652639f9d9dSBarry Smith 
1653d9274352SBarry Smith    Level: beginner
1654d9274352SBarry Smith 
1655ec5066bdSBarry Smith    Notes:
165687497f52SBarry Smith    This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()`
1657ec5066bdSBarry Smith 
16582ef1f0ffSBarry Smith    The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object
16592ef1f0ffSBarry Smith 
16602ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()`
1661d9274352SBarry Smith S*/
1662e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring;
1663639f9d9dSBarry Smith 
1664014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *);
1665014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *);
1666014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer);
1667014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *);
1668014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **);
1669014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal);
1670014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring);
1671d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *);
1672014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec);
1673edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]);
1674f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring);
1675f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt);
1676bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *);
1677b1683b59SHong Zhang 
1678b1683b59SHong Zhang /*S
1679b9af6bddSHong Zhang      MatTransposeColoring - Object for computing a sparse matrix product C=A*B^T via coloring
1680b1683b59SHong Zhang 
16812ef1f0ffSBarry Smith    Level: developer
1682b1683b59SHong Zhang 
16832ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()`
1684b1683b59SHong Zhang S*/
1685b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring;
1686b1683b59SHong Zhang 
1687014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *);
1688014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat);
1689014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat);
1690014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *);
1691b1683b59SHong Zhang 
1692d9274352SBarry Smith /*S
1693d9274352SBarry Smith      MatPartitioning - Object for managing the partitioning of a matrix or graph
1694d9274352SBarry Smith 
1695d9274352SBarry Smith    Level: beginner
1696d9274352SBarry Smith 
169787497f52SBarry Smith    Note:
169887497f52SBarry Smith      There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations
169987497f52SBarry Smith      via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`)
1700ec5066bdSBarry Smith 
1701ec5066bdSBarry Smith    Developers Note:
17022ef1f0ffSBarry Smith      It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed
1703ec5066bdSBarry Smith 
17042ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`,
17052ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
1706d9274352SBarry Smith S*/
170791e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning;
1708d9274352SBarry Smith 
170976bdecfbSBarry Smith /*J
17108f6c3df8SBarry Smith     MatPartitioningType - String with the name of a PETSc matrix partitioning
1711d9274352SBarry Smith 
1712d9274352SBarry Smith    Level: beginner
17130d04baf8SBarry Smith dm
17142ef1f0ffSBarry Smith .seealso: [](chapter_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`,
17152ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
171676bdecfbSBarry Smith J*/
171719fd82e9SBarry Smith typedef const char *MatPartitioningType;
17182692d6eeSBarry Smith #define MATPARTITIONINGCURRENT  "current"
1719aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE  "average"
17202692d6eeSBarry Smith #define MATPARTITIONINGSQUARE   "square"
17212692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis"
17222692d6eeSBarry Smith #define MATPARTITIONINGCHACO    "chaco"
17232692d6eeSBarry Smith #define MATPARTITIONINGPARTY    "party"
172450d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch"
172588d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch"
172671306c60Sjroman 
1727014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *);
172819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType);
1729014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt);
1730014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat);
1731252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt);
1732014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]);
1733014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]);
1734ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool);
1735ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *);
1736014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *);
1737fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *);
1738668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS);
1739f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *);
1740014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *);
1741bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning));
1742014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer);
1743fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]);
1744014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning);
174519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *);
1746ca161407SBarry Smith 
174727538973SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part);
1748014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning);
1749014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *);
17500752156aSBarry Smith 
17519371c9d4SSatish Balay typedef enum {
17529371c9d4SSatish Balay   MP_CHACO_MULTILEVEL = 1,
17539371c9d4SSatish Balay   MP_CHACO_SPECTRAL   = 2,
17549371c9d4SSatish Balay   MP_CHACO_LINEAR     = 4,
17559371c9d4SSatish Balay   MP_CHACO_RANDOM     = 5,
17569371c9d4SSatish Balay   MP_CHACO_SCATTERED  = 6
17579371c9d4SSatish Balay } MPChacoGlobalType;
17586a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[];
17599371c9d4SSatish Balay typedef enum {
17609371c9d4SSatish Balay   MP_CHACO_KERNIGHAN = 1,
17619371c9d4SSatish Balay   MP_CHACO_NONE      = 2
17629371c9d4SSatish Balay } MPChacoLocalType;
17636a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[];
17649371c9d4SSatish Balay typedef enum {
17659371c9d4SSatish Balay   MP_CHACO_LANCZOS = 0,
17669371c9d4SSatish Balay   MP_CHACO_RQI     = 1
17679371c9d4SSatish Balay } MPChacoEigenType;
17686a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[];
1769b6956c12SJose Roman 
1770014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType);
1771014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *);
1772014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType);
1773014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *);
1774014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal);
1775014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType);
1776014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *);
1777014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal);
1778014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *);
1779014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt);
1780014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *);
178171306c60Sjroman 
178271306c60Sjroman #define MP_PARTY_OPT "opt"
178371306c60Sjroman #define MP_PARTY_LIN "lin"
178471306c60Sjroman #define MP_PARTY_SCA "sca"
178571306c60Sjroman #define MP_PARTY_RAN "ran"
178671306c60Sjroman #define MP_PARTY_GBF "gbf"
178771306c60Sjroman #define MP_PARTY_GCF "gcf"
178871306c60Sjroman #define MP_PARTY_BUB "bub"
178971306c60Sjroman #define MP_PARTY_DEF "def"
1790014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *);
179171306c60Sjroman #define MP_PARTY_HELPFUL_SETS  "hs"
179271306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl"
179371306c60Sjroman #define MP_PARTY_NONE          "no"
1794014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *);
1795014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal);
1796014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool);
1797014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool);
179871306c60Sjroman 
17999371c9d4SSatish Balay typedef enum {
18009371c9d4SSatish Balay   MP_PTSCOTCH_DEFAULT,
18019371c9d4SSatish Balay   MP_PTSCOTCH_QUALITY,
18029371c9d4SSatish Balay   MP_PTSCOTCH_SPEED,
18039371c9d4SSatish Balay   MP_PTSCOTCH_BALANCE,
18049371c9d4SSatish Balay   MP_PTSCOTCH_SAFETY,
18059371c9d4SSatish Balay   MP_PTSCOTCH_SCALABILITY
18069371c9d4SSatish Balay } MPPTScotchStrategyType;
18076a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[];
1808e0f1cffaSJose Roman 
1809014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal);
1810014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *);
1811014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType);
1812014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *);
181371306c60Sjroman 
1814b43b03e9SMark F. Adams /*
18156294fa2bSFande Kong  * hierarchical partitioning
18166294fa2bSFande Kong  */
18174e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *);
18184e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *);
18194e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt);
18204e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt);
18216294fa2bSFande Kong 
1822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *);
1823591294e4SBarry Smith 
18240752156aSBarry Smith /*
1825c786d857SStefano Zampini     If you add entries here you must also add them to src/mat/f90-mod/petscmat.h
1826c786d857SStefano Zampini     If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx
1827d4fbbf0eSBarry Smith */
18289371c9d4SSatish Balay typedef enum {
18299371c9d4SSatish Balay   MATOP_SET_VALUES               = 0,
18301c1c02c0SLois Curfman McInnes   MATOP_GET_ROW                  = 1,
18311c1c02c0SLois Curfman McInnes   MATOP_RESTORE_ROW              = 2,
18321c1c02c0SLois Curfman McInnes   MATOP_MULT                     = 3,
18331c1c02c0SLois Curfman McInnes   MATOP_MULT_ADD                 = 4,
18347c922b88SBarry Smith   MATOP_MULT_TRANSPOSE           = 5,
18357c922b88SBarry Smith   MATOP_MULT_TRANSPOSE_ADD       = 6,
18361c1c02c0SLois Curfman McInnes   MATOP_SOLVE                    = 7,
18371c1c02c0SLois Curfman McInnes   MATOP_SOLVE_ADD                = 8,
18387c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE          = 9,
18397c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE_ADD      = 10,
18401c1c02c0SLois Curfman McInnes   MATOP_LUFACTOR                 = 11,
18411c1c02c0SLois Curfman McInnes   MATOP_CHOLESKYFACTOR           = 12,
1842a714c06dSBarry Smith   MATOP_SOR                      = 13,
18431c1c02c0SLois Curfman McInnes   MATOP_TRANSPOSE                = 14,
18441c1c02c0SLois Curfman McInnes   MATOP_GETINFO                  = 15,
18451c1c02c0SLois Curfman McInnes   MATOP_EQUAL                    = 16,
18461c1c02c0SLois Curfman McInnes   MATOP_GET_DIAGONAL             = 17,
18471c1c02c0SLois Curfman McInnes   MATOP_DIAGONAL_SCALE           = 18,
18481c1c02c0SLois Curfman McInnes   MATOP_NORM                     = 19,
18491c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_BEGIN           = 20,
18501c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_END             = 21,
1851d519adbfSMatthew Knepley   MATOP_SET_OPTION               = 22,
1852d519adbfSMatthew Knepley   MATOP_ZERO_ENTRIES             = 23,
1853d519adbfSMatthew Knepley   MATOP_ZERO_ROWS                = 24,
1854d519adbfSMatthew Knepley   MATOP_LUFACTOR_SYMBOLIC        = 25,
1855d519adbfSMatthew Knepley   MATOP_LUFACTOR_NUMERIC         = 26,
1856d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27,
1857d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_NUMERIC  = 28,
1858e5f2d425SStefano Zampini   MATOP_SETUP                    = 29,
1859d519adbfSMatthew Knepley   MATOP_ILUFACTOR_SYMBOLIC       = 30,
1860d519adbfSMatthew Knepley   MATOP_ICCFACTOR_SYMBOLIC       = 31,
1861a5b7ff6bSBarry Smith   MATOP_GET_DIAGONAL_BLOCK       = 32,
1862e5f2d425SStefano Zampini   MATOP_SET_INF                  = 33,
1863d519adbfSMatthew Knepley   MATOP_DUPLICATE                = 34,
1864d519adbfSMatthew Knepley   MATOP_FORWARD_SOLVE            = 35,
1865d519adbfSMatthew Knepley   MATOP_BACKWARD_SOLVE           = 36,
1866d519adbfSMatthew Knepley   MATOP_ILUFACTOR                = 37,
1867d519adbfSMatthew Knepley   MATOP_ICCFACTOR                = 38,
1868d519adbfSMatthew Knepley   MATOP_AXPY                     = 39,
18697dae84e0SHong Zhang   MATOP_CREATE_SUBMATRICES       = 40,
1870d519adbfSMatthew Knepley   MATOP_INCREASE_OVERLAP         = 41,
1871d519adbfSMatthew Knepley   MATOP_GET_VALUES               = 42,
1872d519adbfSMatthew Knepley   MATOP_COPY                     = 43,
1873d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX              = 44,
1874d519adbfSMatthew Knepley   MATOP_SCALE                    = 45,
1875d519adbfSMatthew Knepley   MATOP_SHIFT                    = 46,
187635153367SBarry Smith   MATOP_DIAGONAL_SET             = 47,
18779d39f69dSJed Brown   MATOP_ZERO_ROWS_COLUMNS        = 48,
18789d39f69dSJed Brown   MATOP_SET_RANDOM               = 49,
1879d519adbfSMatthew Knepley   MATOP_GET_ROW_IJ               = 50,
1880d519adbfSMatthew Knepley   MATOP_RESTORE_ROW_IJ           = 51,
1881d519adbfSMatthew Knepley   MATOP_GET_COLUMN_IJ            = 52,
1882d519adbfSMatthew Knepley   MATOP_RESTORE_COLUMN_IJ        = 53,
1883d519adbfSMatthew Knepley   MATOP_FDCOLORING_CREATE        = 54,
1884d519adbfSMatthew Knepley   MATOP_COLORING_PATCH           = 55,
1885d519adbfSMatthew Knepley   MATOP_SET_UNFACTORED           = 56,
1886d519adbfSMatthew Knepley   MATOP_PERMUTE                  = 57,
1887d519adbfSMatthew Knepley   MATOP_SET_VALUES_BLOCKED       = 58,
18887dae84e0SHong Zhang   MATOP_CREATE_SUBMATRIX         = 59,
1889d519adbfSMatthew Knepley   MATOP_DESTROY                  = 60,
1890d519adbfSMatthew Knepley   MATOP_VIEW                     = 61,
1891d519adbfSMatthew Knepley   MATOP_CONVERT_FROM             = 62,
1892e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_63=63 */
18937bab7c10SHong Zhang   MATOP_MATMAT_MULT_SYMBOLIC    = 64,
18947bab7c10SHong Zhang   MATOP_MATMAT_MULT_NUMERIC     = 65,
1895d519adbfSMatthew Knepley   MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66,
1896d519adbfSMatthew Knepley   MATOP_SET_VALUES_LOCAL        = 67,
1897d519adbfSMatthew Knepley   MATOP_ZERO_ROWS_LOCAL         = 68,
1898d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX_ABS         = 69,
1899d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN_ABS         = 70,
1900d519adbfSMatthew Knepley   MATOP_CONVERT                 = 71,
1901e5f2d425SStefano Zampini   MATOP_HAS_OPERATION           = 72,
19029d39f69dSJed Brown   /* MATOP_PLACEHOLDER_73=73, */
1903d519adbfSMatthew Knepley   MATOP_SET_VALUES_ADIFOR = 74,
1904d519adbfSMatthew Knepley   MATOP_FD_COLORING_APPLY = 75,
1905d519adbfSMatthew Knepley   MATOP_SET_FROM_OPTIONS  = 76,
1906e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_77=77, */
1907e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_78=78, */
19089d39f69dSJed Brown   MATOP_FIND_ZERO_DIAGONALS       = 79,
1909d519adbfSMatthew Knepley   MATOP_MULT_MULTIPLE             = 80,
1910d519adbfSMatthew Knepley   MATOP_SOLVE_MULTIPLE            = 81,
1911d519adbfSMatthew Knepley   MATOP_GET_INERTIA               = 82,
1912d519adbfSMatthew Knepley   MATOP_LOAD                      = 83,
1913d519adbfSMatthew Knepley   MATOP_IS_SYMMETRIC              = 84,
1914d519adbfSMatthew Knepley   MATOP_IS_HERMITIAN              = 85,
1915d519adbfSMatthew Knepley   MATOP_IS_STRUCTURALLY_SYMMETRIC = 86,
1916820469bcSHong Zhang   MATOP_SET_VALUES_BLOCKEDLOCAL   = 87,
1917b41ce5d5SBarry Smith   MATOP_CREATE_VECS               = 88,
1918e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_89=89, */
1919d519adbfSMatthew Knepley   MATOP_MAT_MULT_SYMBOLIC = 90,
1920d519adbfSMatthew Knepley   MATOP_MAT_MULT_NUMERIC  = 91,
1921e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_92=92, */
1922d519adbfSMatthew Knepley   MATOP_PTAP_SYMBOLIC = 93,
1923d519adbfSMatthew Knepley   MATOP_PTAP_NUMERIC  = 94,
1924e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_95=95, */
1925bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96,
1926bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_NUMER = 97,
1927e5f2d425SStefano Zampini   MATOP_BIND_TO_CPU              = 98,
19287a3c3d58SStefano Zampini   MATOP_PRODUCTSETFROMOPTIONS    = 99,
19297a3c3d58SStefano Zampini   MATOP_PRODUCTSYMBOLIC          = 100,
19307a3c3d58SStefano Zampini   MATOP_PRODUCTNUMERIC           = 101,
1931d519adbfSMatthew Knepley   MATOP_CONJUGATE                = 102,
1932e5f2d425SStefano Zampini   MATOP_VIEW_NATIVE              = 103,
1933d519adbfSMatthew Knepley   MATOP_SET_VALUES_ROW           = 104,
1934d519adbfSMatthew Knepley   MATOP_REAL_PART                = 105,
1935bda6c4cbSBarry Smith   MATOP_IMAGINARY_PART           = 106,
1936bda6c4cbSBarry Smith   MATOP_GET_ROW_UPPER_TRIANGULAR = 107,
1937bda6c4cbSBarry Smith   MATOP_RESTORE_ROW_UPPER_TRIANG = 108,
1938bda6c4cbSBarry Smith   MATOP_MAT_SOLVE                = 109,
193929eadf9eSStefano Zampini   MATOP_MAT_SOLVE_TRANSPOSE      = 110,
1940d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN              = 111,
19410e8d04f7SBarry Smith   MATOP_GET_COLUMN_VECTOR        = 112,
1942d519adbfSMatthew Knepley   MATOP_MISSING_DIAGONAL         = 113,
19430e8d04f7SBarry Smith   MATOP_GET_SEQ_NONZERO_STRUCTUR = 114,
194489c6957cSBarry Smith   MATOP_CREATE                   = 115,
194589c6957cSBarry Smith   MATOP_GET_GHOSTS               = 116,
19460e8d04f7SBarry Smith   MATOP_GET_LOCAL_SUB_MATRIX     = 117,
19470e8d04f7SBarry Smith   MATOP_RESTORE_LOCALSUB_MATRIX  = 118,
1948eeffb40dSHong Zhang   MATOP_MULT_DIAGONAL_BLOCK      = 119,
19490e8d04f7SBarry Smith   MATOP_HERMITIAN_TRANSPOSE      = 120,
19500e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANSPOSE = 121,
19510e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANS_ADD = 122,
19520e8d04f7SBarry Smith   MATOP_GET_MULTI_PROC_BLOCK     = 123,
19539d39f69dSJed Brown   MATOP_FIND_NONZERO_ROWS        = 124,
19540e8d04f7SBarry Smith   MATOP_GET_COLUMN_NORMS         = 125,
19559d39f69dSJed Brown   MATOP_INVERT_BLOCK_DIAGONAL    = 126,
1956e5f2d425SStefano Zampini   MATOP_INVERT_VBLOCK_DIAGONAL   = 127,
1957b41ce5d5SBarry Smith   MATOP_CREATE_SUB_MATRICES_MPI  = 128,
19582b8ad9a3SHong Zhang   MATOP_SET_VALUES_BATCH         = 129,
1959e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_130=130, */
19600e8d04f7SBarry Smith   MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131,
1961e9b602ebSSatish Balay   MATOP_TRANSPOSE_MAT_MULT_NUMER = 132,
19620e8d04f7SBarry Smith   MATOP_TRANSPOSE_COLORING_CREAT = 133,
19630e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_SPT = 134,
19640e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_DEN = 135,
1965e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_136=136, */
19660e8d04f7SBarry Smith   MATOP_RART_SYMBOLIC         = 137,
19670e8d04f7SBarry Smith   MATOP_RART_NUMERIC          = 138,
1968e09a3074SHong Zhang   MATOP_SET_BLOCK_SIZES       = 139,
1969f9426fe0SMark Adams   MATOP_AYPX                  = 140,
19701919a2e2SJed Brown   MATOP_RESIDUAL              = 141,
19719c8f2541SHong Zhang   MATOP_FDCOLORING_SETUP      = 142,
1972e5f2d425SStefano Zampini   MATOP_FIND_OFFBLOCK_ENTRIES = 143,
19732d033e1fSHong Zhang   MATOP_MPICONCATENATESEQ     = 144,
1974bb01b7b0SPatrick Sanan   MATOP_DESTROYSUBMATRICES    = 145,
1975e265f6d6SPatrick Sanan   MATOP_TRANSPOSE_SOLVE       = 146,
1976e265f6d6SPatrick Sanan   MATOP_GET_VALUES_LOCAL      = 147
1977fae171e0SBarry Smith } MatOperation;
19780c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void));
1979976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void));
1980976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *);
198194342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *);
1982d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatProductClear() (since version 3.14)") static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A)
1983d71ae5a4SJacob Faibussowitsch {
19849371c9d4SSatish Balay   return MatProductClear(A);
19859371c9d4SSatish Balay }
1986014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void));
1987014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void));
1988014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *);
1989800f99ffSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *));
1990db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType);
1991f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
1992f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
19930c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat);
1994b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType);
1995b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *);
1996112a2221SBarry Smith 
199790ace30eSBarry Smith /*
199890ace30eSBarry Smith    Codes for matrices stored on disk. By default they are
199990ace30eSBarry Smith    stored in a universal format. By changing the format with
20006a9046bcSBarry Smith    PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will
200190ace30eSBarry Smith    be stored in a way natural for the matrix, for example dense matrices
200290ace30eSBarry Smith    would be stored as dense. Matrices stored this way may only be
2003f4403165SShri Abhyankar    read into matrices of the same type.
200490ace30eSBarry Smith */
200590ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1
200690ace30eSBarry Smith 
2007014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal);
200875d48cdbSStefano Zampini 
20098546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType);
201075d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
201175d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool);
2012f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool);
2013014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *);
20143b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *);
2015014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat);
2016e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
201725ef9dfeSBarry Smith PETSC_EXTERN                PETSC_DEPRECATED_FUNCTION("Use the MatConvert() interface (since version 3.10)") PetscErrorCode MatISGetMPIXAIJ(Mat, MatReuse, Mat *);
20181f4e1ec7SBarry Smith 
2019d9274352SBarry Smith /*S
2020d9274352SBarry Smith      MatNullSpace - Object that removes a null space from a vector, i.e.
2021cb6b9846SMatthew Knepley          orthogonalizes the vector to a subspace
2022d9274352SBarry Smith 
2023f7a9e4ceSBarry Smith    Level: advanced
2024d9274352SBarry Smith 
20252ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()`
2026d9274352SBarry Smith S*/
202774637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace;
2028d9274352SBarry Smith 
2029014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *);
2030014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *);
2031014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *);
2032d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec);
2033014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *);
20345fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *);
20355fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace);
2036014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace);
2037014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace);
2038014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *);
2039014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *);
2040014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer);
2041014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **);
2042014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *);
204374637425SBarry Smith 
2044014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS);
2045014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal);
2046014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *);
20473f1d51d7SBarry Smith 
2048014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *);
2049014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *);
2050014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *);
2051c4f061fbSSatish Balay 
20520bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *);
20530bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *);
20540bacdadaSStefano Zampini 
2055d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatComputeOperator() (since version 3.12)") static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B)
2056d71ae5a4SJacob Faibussowitsch {
2057f22e26b7SPierre Jolivet   return MatComputeOperator(A, PETSC_NULLPTR, B);
20589371c9d4SSatish Balay }
2059d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatComputeOperatorTranspose() (since version 3.12)") static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B)
2060d71ae5a4SJacob Faibussowitsch {
2061f22e26b7SPierre Jolivet   return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B);
20629371c9d4SSatish Balay }
2063b0a32e0cSBarry Smith 
206449bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *);
206549bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *);
2066a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **);
2067a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2068a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **);
2069a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **);
2070a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **);
2071a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2072a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **);
2073a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **);
2074dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat);
2075dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]);
2076dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]);
2077910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *);
207849bd79ccSDebojyoti Ghosh 
2079014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec);
208004f1ad80SBarry Smith 
2081014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2082014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec);
2083014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *);
2084014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *));
2085014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec));
2086014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt);
2087014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat);
2088014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal);
2089014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt);
2090014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *);
2091014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]);
2092014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *);
2093014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *);
2094e884886fSBarry Smith 
20956370053bSBarry Smith /*S
20966370053bSBarry Smith     MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free
20976370053bSBarry Smith               Jacobian vector products
2098e884886fSBarry Smith 
20992ef1f0ffSBarry Smith     Level: developer
21002ef1f0ffSBarry Smith 
210195452b02SPatrick Sanan     Notes:
210287497f52SBarry Smith     `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure
21036370053bSBarry Smith 
21042ef1f0ffSBarry Smith      MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure
21056370053bSBarry Smith 
21062ef1f0ffSBarry Smith     This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator`
21076370053bSBarry Smith 
21082ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`,
21092ef1f0ffSBarry Smith           `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator`
21106370053bSBarry Smith S*/
2111e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD;
2112e884886fSBarry Smith 
211376bdecfbSBarry Smith /*J
21142ef1f0ffSBarry Smith     MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function
2115e884886fSBarry Smith 
211616a05f60SBarry Smith    Values:
211716a05f60SBarry Smith +   `MATMFFD_DS` - an algorithm described by Dennis and Schnabel
211816a05f60SBarry Smith -   `MATMFFD_WP` - the Walker-Pernice strategy.
211916a05f60SBarry Smith 
2120e884886fSBarry Smith    Level: beginner
2121e884886fSBarry Smith 
21222ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()`
212376bdecfbSBarry Smith J*/
212419fd82e9SBarry Smith typedef const char *MatMFFDType;
2125e884886fSBarry Smith #define MATMFFD_DS "ds"
2126e884886fSBarry Smith #define MATMFFD_WP "wp"
2127e884886fSBarry Smith 
212819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType);
2129bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD));
2130e884886fSBarry Smith 
2131014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal);
2132014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool);
2133e884886fSBarry Smith 
213461ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType);
213561ab5df0SBarry Smith 
2136014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *);
2137014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *);
21387dbadf16SMatthew Knepley 
213953022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS
214053022affSStefano Zampini PETSC_EXTERN_TYPEDEF typedef PetscScalar (*MatH2OpusKernel)(PetscInt, PetscReal[], PetscReal[], void *);
214153022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernel, void *, PetscReal, PetscInt, PetscInt, Mat *);
214253022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *);
214353022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal);
214453022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat);
214553022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal);
214653022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool);
214753022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *);
214853022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *);
214953022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *);
2150300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar);
2151a0d2e7d8SStefano Zampini #endif
2152a0d2e7d8SStefano Zampini 
2153c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL
215498e73e17SPierre Jolivet PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatHtoolKernel)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *);
2155c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernel, void *, Mat *);
2156c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernel, void *);
215798e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *);
215898e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *);
215998e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool);
21602ef1f0ffSBarry Smith 
2161c7a4214aSPierre Jolivet /*E
216287497f52SBarry Smith      MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL`
2163c7a4214aSPierre Jolivet 
2164c7a4214aSPierre Jolivet     Values:
216587497f52SBarry Smith +   `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation
216687497f52SBarry Smith .   `MAT_HTOOL_COMPRESSOR_FULL_ACA` - full adaptive cross approximation
216787497f52SBarry Smith -   `MAT_HTOOL_COMPRESSOR_SVD` - singular value decomposition
2168c7a4214aSPierre Jolivet 
216916a05f60SBarry Smith    Level: intermediate
217016a05f60SBarry Smith 
21712ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType`
2172c7a4214aSPierre Jolivet E*/
21739371c9d4SSatish Balay typedef enum {
21749371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA,
21759371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_FULL_ACA,
21769371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SVD
21779371c9d4SSatish Balay } MatHtoolCompressorType;
21782ef1f0ffSBarry Smith 
217998e73e17SPierre Jolivet /*E
218087497f52SBarry Smith      MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL`
218198e73e17SPierre Jolivet 
218298e73e17SPierre Jolivet     Values:
218387497f52SBarry Smith +   `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default) - axis computed via principle component analysis, split uniformly
218487497f52SBarry Smith .   `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC` - axis computed via principle component analysis, split barycentrically
218587497f52SBarry Smith .   `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR` - axis along the largest extent of the bounding box, split uniformly
218687497f52SBarry Smith -   `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically
218798e73e17SPierre Jolivet 
218816a05f60SBarry Smith    Level: intermediate
218916a05f60SBarry Smith 
21902ef1f0ffSBarry Smith     Note:
21912ef1f0ffSBarry Smith     Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types
219298e73e17SPierre Jolivet 
21932ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType`
219498e73e17SPierre Jolivet E*/
21959371c9d4SSatish Balay typedef enum {
21969371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_REGULAR,
21979371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC,
21989371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR,
21999371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC
22009371c9d4SSatish Balay } MatHtoolClusteringType;
2201c7a4214aSPierre Jolivet #endif
2202c7a4214aSPierre Jolivet 
220397969023SHong Zhang #ifdef PETSC_HAVE_MUMPS
2204014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt);
2205bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *);
2206b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal);
2207bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *);
2208bc6112feSHong Zhang 
2209ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *);
2210ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *);
2211ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *);
2212ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *);
22135c0bae8cSAshish Patel PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **);
221489a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat);
22150e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat);
221697969023SHong Zhang #endif
221723a5497aSJed Brown 
2218b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO
2219d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt);
2220b500a6b7SJose David Bermeol #endif
2221b500a6b7SJose David Bermeol 
2222d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO
2223d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt);
2224d305a81bSVasiliy Kozyrev #endif
2225d305a81bSVasiliy Kozyrev 
2226d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU
2227014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal);
2228d954db57SHong Zhang #endif
2229d954db57SHong Zhang 
2230fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST
2231fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *);
2232fb785984SHong Zhang #endif
2233fb785984SHong Zhang 
2234575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK
2235542aee0fSPieter Ghysels /*E
22362ef1f0ffSBarry Smith     MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK``
2237542aee0fSPieter Ghysels 
22382ef1f0ffSBarry Smith     Values:
22392ef1f0ffSBarry Smith +  `MAT_STRUMPACK_NATURAL` - use the current ordering
22402ef1f0ffSBarry Smith .  `MAT_STRUMPACK_METIS` - use MeTis to compute an ordering
22412ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PARMETIS` - use ParMeTis to compute an ordering
22422ef1f0ffSBarry Smith .  `MAT_STRUMPACK_SCOTCH` - use Scotch to compute an ordering
22432ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PTSCOTCH` - use parallel Scotch to compute an ordering
22442ef1f0ffSBarry Smith -  `MAT_STRUMPACK_RCM` - use an RCM ordering
22452ef1f0ffSBarry Smith 
224616a05f60SBarry Smith     Level: intermediate
224716a05f60SBarry Smith 
22482ef1f0ffSBarry Smith     Developer Note:
22492ef1f0ffSBarry Smith     Should be called `MatSTRUMPACKReorderingType`
22502ef1f0ffSBarry Smith 
22512ef1f0ffSBarry Smith .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetHSSRelTol()`, `MatSTRUMPACKSetReordering()`
2252542aee0fSPieter Ghysels E*/
22539371c9d4SSatish Balay typedef enum {
22549371c9d4SSatish Balay   MAT_STRUMPACK_NATURAL  = 0,
225534f43fa5SPieter Ghysels   MAT_STRUMPACK_METIS    = 1,
225634f43fa5SPieter Ghysels   MAT_STRUMPACK_PARMETIS = 2,
225734f43fa5SPieter Ghysels   MAT_STRUMPACK_SCOTCH   = 3,
225834f43fa5SPieter Ghysels   MAT_STRUMPACK_PTSCOTCH = 4,
22599371c9d4SSatish Balay   MAT_STRUMPACK_RCM      = 5
22609371c9d4SSatish Balay } MatSTRUMPACKReordering;
22612ef1f0ffSBarry Smith 
226234f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering);
2263575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool);
226434f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSRelTol(Mat, PetscReal);
2265d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSTRUMPACKSetHSSRelTol() (since version 3.9)") static inline PetscErrorCode MatSTRUMPACKSetHSSRelCompTol(Mat mat, PetscReal rtol)
2266d71ae5a4SJacob Faibussowitsch {
22679371c9d4SSatish Balay   return MatSTRUMPACKSetHSSRelTol(mat, rtol);
22689371c9d4SSatish Balay }
226934f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSAbsTol(Mat, PetscReal);
227034f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMinSepSize(Mat, PetscInt);
2271d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatSTRUMPACKSetHSSMinSepSize() (since version 3.9)") static inline PetscErrorCode MatSTRUMPACKSetHSSMinSize(Mat mat, PetscInt hssminsize)
2272d71ae5a4SJacob Faibussowitsch {
22739371c9d4SSatish Balay   return MatSTRUMPACKSetHSSMinSepSize(mat, hssminsize);
22749371c9d4SSatish Balay }
227534f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMaxRank(Mat, PetscInt);
2276a36bf211SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSLeafSize(Mat, PetscInt);
2277575704cbSPieter Ghysels #endif
2278575704cbSPieter Ghysels 
2279b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool);
22802216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *);
2281d71ae5a4SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION("Use MatBindToCPU (since v3.13)") static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg)
2282d71ae5a4SJacob Faibussowitsch {
22839371c9d4SSatish Balay   return MatBindToCPU(A, flg);
22849371c9d4SSatish Balay }
228565a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool);
2286e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *);
2287e7e92044SBarry Smith 
2288042217e8SBarry Smith typedef struct _n_SplitCSRMat *PetscSplitCSRDataStructure;
2289042217e8SBarry Smith PETSC_EXTERN PetscErrorCode    MatCUSPARSEGetDeviceMatWrite(Mat, PetscSplitCSRDataStructure *);
2290a587d139SMark 
2291a587d139SMark #ifdef PETSC_HAVE_KOKKOS_KERNELS
2292042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatKokkosGetDeviceMatWrite(Mat, PetscSplitCSRDataStructure *);
2293042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJKokkosSetDeviceMat(Mat, PetscSplitCSRDataStructure);
2294042217e8SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJKokkosGetDeviceMat(Mat, PetscSplitCSRDataStructure *);
2295a587d139SMark #endif
2296a587d139SMark 
2297aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA
22983f9c0db1SPaul Mullowney /*E
22992ef1f0ffSBarry Smith     MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU)
23002692e278SPaul Mullowney     matrices.
2301e057df02SPaul Mullowney 
23022ef1f0ffSBarry Smith     Values:
230387497f52SBarry Smith +   `MAT_CUSPARSE_CSR` - Compressed Sparse Row
230487497f52SBarry Smith .   `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later).
230587497f52SBarry Smith -   `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later).
2306e057df02SPaul Mullowney 
2307e057df02SPaul Mullowney     Level: intermediate
2308e057df02SPaul Mullowney 
23092ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation`
2310e057df02SPaul Mullowney E*/
2311e057df02SPaul Mullowney 
23129371c9d4SSatish Balay typedef enum {
23139371c9d4SSatish Balay   MAT_CUSPARSE_CSR,
23149371c9d4SSatish Balay   MAT_CUSPARSE_ELL,
23159371c9d4SSatish Balay   MAT_CUSPARSE_HYB
23169371c9d4SSatish Balay } MatCUSPARSEStorageFormat;
2317e057df02SPaul Mullowney 
2318e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */
2319e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[];
2320e057df02SPaul Mullowney 
23213f9c0db1SPaul Mullowney /*E
23222ef1f0ffSBarry Smith     MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU)
23232692e278SPaul Mullowney     matrices whose operation should use a particular storage format.
2324e057df02SPaul Mullowney 
23252ef1f0ffSBarry Smith     Values:
232687497f52SBarry Smith +   `MAT_CUSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel MatMult
232787497f52SBarry Smith .   `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel MatMult
232887497f52SBarry Smith .   `MAT_CUSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) MatMult
23292ef1f0ffSBarry Smith -   `MAT_CUSPARSE_ALL` - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices
2330e057df02SPaul Mullowney 
2331e057df02SPaul Mullowney     Level: intermediate
2332e057df02SPaul Mullowney 
23332ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat`
2334e057df02SPaul Mullowney E*/
23359371c9d4SSatish Balay typedef enum {
23369371c9d4SSatish Balay   MAT_CUSPARSE_MULT_DIAG,
23379371c9d4SSatish Balay   MAT_CUSPARSE_MULT_OFFDIAG,
23389371c9d4SSatish Balay   MAT_CUSPARSE_MULT,
23399371c9d4SSatish Balay   MAT_CUSPARSE_ALL
23409371c9d4SSatish Balay } MatCUSPARSEFormatOperation;
2341e057df02SPaul Mullowney 
234210e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
234310e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2344e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat);
2345365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool);
23465f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
23475f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
23485f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **);
23495f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **);
23505f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **);
23515f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **);
23525f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **);
23535f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **);
2354637a0070SStefano Zampini 
2355637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
2356637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
2357637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **);
2358637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **);
2359637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **);
2360637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **);
2361637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **);
2362637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **);
2363637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *);
2364d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *);
2365637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat);
23669ae82921SPaul Mullowney #endif
23679ae82921SPaul Mullowney 
236847d993e7Ssuyashtn #ifdef PETSC_HAVE_HIP
236947d993e7Ssuyashtn /*E
23702ef1f0ffSBarry Smith     MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU)
237147d993e7Ssuyashtn     matrices.
237247d993e7Ssuyashtn 
23732ef1f0ffSBarry Smith     Values:
23742ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_CSR` - Compressed Sparse Row
23752ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_ELL` - Ellpack
23762ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format
237747d993e7Ssuyashtn 
237816a05f60SBarry Smith     Level: intermediate
237916a05f60SBarry Smith 
23802ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation`
238147d993e7Ssuyashtn E*/
238247d993e7Ssuyashtn 
238347d993e7Ssuyashtn typedef enum {
238447d993e7Ssuyashtn   MAT_HIPSPARSE_CSR,
238547d993e7Ssuyashtn   MAT_HIPSPARSE_ELL,
238647d993e7Ssuyashtn   MAT_HIPSPARSE_HYB
238747d993e7Ssuyashtn } MatHIPSPARSEStorageFormat;
238847d993e7Ssuyashtn 
238947d993e7Ssuyashtn /* these will be strings associated with enumerated type defined above */
239047d993e7Ssuyashtn PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[];
239147d993e7Ssuyashtn 
239247d993e7Ssuyashtn /*E
23932ef1f0ffSBarry Smith     MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU)
239447d993e7Ssuyashtn     matrices whose operation should use a particular storage format.
239547d993e7Ssuyashtn 
23962ef1f0ffSBarry Smith     Values:
23972ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()`
2398*eb495b2aSPierre Jolivet .   `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel `MatMult()`
23992ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()`
24002ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_ALL` - sets the storage format for all HIPSPARSE (GPU) matrices
24012ef1f0ffSBarry Smith 
240216a05f60SBarry Smith     Level: intermediate
240316a05f60SBarry Smith 
24042ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat`
240547d993e7Ssuyashtn E*/
240647d993e7Ssuyashtn typedef enum {
240747d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_DIAG,
240847d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_OFFDIAG,
240947d993e7Ssuyashtn   MAT_HIPSPARSE_MULT,
241047d993e7Ssuyashtn   MAT_HIPSPARSE_ALL
241147d993e7Ssuyashtn } MatHIPSPARSEFormatOperation;
241247d993e7Ssuyashtn 
241347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
241447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
241547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat);
241647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool);
241747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
241847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
241947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **);
242047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **);
242147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **);
242247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **);
242347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **);
242447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **);
242547d993e7Ssuyashtn 
242647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
242747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
242847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **);
242947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **);
243047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **);
243147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **);
243247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **);
243347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **);
243447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *);
243547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *);
243647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat);
243747d993e7Ssuyashtn #endif
243847d993e7Ssuyashtn 
2439d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL)
2440d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2441d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2442d67ff14aSKarl Rupp #endif
2443d67ff14aSKarl Rupp 
244454efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW)
2445014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec);
2446014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec);
24472a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *);
244854efbe56SHong Zhang #endif
244954efbe56SHong Zhang 
2450d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
2451d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2452d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt);
2453d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *);
2454d24d4204SJose E. Roman #endif
2455d24d4204SJose E. Roman 
2456014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *);
2457014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *);
2458014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]);
2459014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]);
2460014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***);
2461014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *);
246219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType);
2463014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]);
2464014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat);
2465d8588912SDave May 
24664325cce7SMatthew G Knepley PETSC_EXTERN PetscErrorCode MatChop(Mat, PetscReal);
2467e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *);
24684325cce7SMatthew G Knepley 
2469b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **);
247053dd7562SDmitry Karpeev 
2471c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat);
2472c094ef40SMatthew G. Knepley 
2473539c167fSBarry Smith PETSC_INTERN PetscErrorCode MatHeaderMerge(Mat, Mat *);
2474539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *);
24751a2c6b5cSJunchao Zhang 
24767ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *);
247772833a62Smarkadams4 
24782d776b49SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, Mat *);
2479dec0b466SHong Zhang PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat);
248023a5497aSJed Brown #endif
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