xref: /petsc/include/petscmat.h (revision edd03b47ed9fa9b7ef9dd67df42d5194593a501d)
12eac72dbSBarry Smith /*
22eac72dbSBarry Smith      Include file for the matrix component of PETSc
32eac72dbSBarry Smith */
426bd1501SBarry Smith #ifndef PETSCMAT_H
526bd1501SBarry Smith #define PETSCMAT_H
6ac09b921SBarry Smith 
72c8e378dSBarry Smith #include <petscvec.h>
82eac72dbSBarry Smith 
9ac09b921SBarry Smith /* SUBMANSEC = Mat */
10ac09b921SBarry Smith 
11d9274352SBarry Smith /*S
128f6c3df8SBarry Smith      Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without
138f6c3df8SBarry Smith            an explicit sparse representation (such as matrix-free operators)
142eac72dbSBarry Smith 
15d91e6319SBarry Smith    Level: beginner
16d91e6319SBarry Smith 
172ef1f0ffSBarry Smith    Note:
181cc06b55SBarry Smith    See [](doc_matrix), [](ch_matrices) and `MatType` for available matrix types
192ef1f0ffSBarry Smith 
201cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()`
21d9274352SBarry Smith S*/
22d9274352SBarry Smith typedef struct _p_Mat *Mat;
23d9274352SBarry Smith 
2476bdecfbSBarry Smith /*J
258f6c3df8SBarry Smith     MatType - String with the name of a PETSc matrix type
26d9274352SBarry Smith 
27d9274352SBarry Smith    Level: beginner
28d9274352SBarry Smith 
292ef1f0ffSBarry Smith    Note:
302ef1f0ffSBarry Smith    [](doc_matrix) for a table of available matrix types
312ef1f0ffSBarry Smith 
321cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()`
3376bdecfbSBarry Smith J*/
3419fd82e9SBarry Smith typedef const char *MatType;
35273d9f13SBarry Smith #define MATSAME                      "same"
365a11e1b2SBarry Smith #define MATMAIJ                      "maij"
37273d9f13SBarry Smith #define MATSEQMAIJ                   "seqmaij"
38273d9f13SBarry Smith #define MATMPIMAIJ                   "mpimaij"
3949bd79ccSDebojyoti Ghosh #define MATKAIJ                      "kaij"
4049bd79ccSDebojyoti Ghosh #define MATSEQKAIJ                   "seqkaij"
4149bd79ccSDebojyoti Ghosh #define MATMPIKAIJ                   "mpikaij"
42273d9f13SBarry Smith #define MATIS                        "is"
435a11e1b2SBarry Smith #define MATAIJ                       "aij"
44273d9f13SBarry Smith #define MATSEQAIJ                    "seqaij"
45273d9f13SBarry Smith #define MATMPIAIJ                    "mpiaij"
465a11e1b2SBarry Smith #define MATAIJCRL                    "aijcrl"
475a11e1b2SBarry Smith #define MATSEQAIJCRL                 "seqaijcrl"
485a11e1b2SBarry Smith #define MATMPIAIJCRL                 "mpiaijcrl"
499ae82921SPaul Mullowney #define MATAIJCUSPARSE               "aijcusparse"
509ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE            "seqaijcusparse"
519ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE            "mpiaijcusparse"
5247d993e7Ssuyashtn #define MATAIJHIPSPARSE              "aijhipsparse"
5347d993e7Ssuyashtn #define MATSEQAIJHIPSPARSE           "seqaijhipsparse"
5447d993e7Ssuyashtn #define MATMPIAIJHIPSPARSE           "mpiaijhipsparse"
558c3ff71bSJunchao Zhang #define MATAIJKOKKOS                 "aijkokkos"
568c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS              "seqaijkokkos"
578c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS              "mpiaijkokkos"
58d67ff14aSKarl Rupp #define MATAIJVIENNACL               "aijviennacl"
59d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL            "seqaijviennacl"
60d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL            "mpiaijviennacl"
615a11e1b2SBarry Smith #define MATAIJPERM                   "aijperm"
625a11e1b2SBarry Smith #define MATSEQAIJPERM                "seqaijperm"
635a11e1b2SBarry Smith #define MATMPIAIJPERM                "mpiaijperm"
644dfdc2d9SRichard Tran Mills #define MATAIJSELL                   "aijsell"
654dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL                "seqaijsell"
664dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL                "mpiaijsell"
674a2a386eSRichard Tran Mills #define MATAIJMKL                    "aijmkl"
684a2a386eSRichard Tran Mills #define MATSEQAIJMKL                 "seqaijmkl"
694a2a386eSRichard Tran Mills #define MATMPIAIJMKL                 "mpiaijmkl"
70b5b72c8aSIrina Sokolova #define MATBAIJMKL                   "baijmkl"
71b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL                "seqbaijmkl"
72b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL                "mpibaijmkl"
73273d9f13SBarry Smith #define MATSHELL                     "shell"
74c1fff1c6SRichard Tran Mills #define MATCENTERING                 "centering"
755a11e1b2SBarry Smith #define MATDENSE                     "dense"
76637a0070SStefano Zampini #define MATDENSECUDA                 "densecuda"
7747d993e7Ssuyashtn #define MATDENSEHIP                  "densehip"
78209238afSKris Buschelman #define MATSEQDENSE                  "seqdense"
79bfc799aaSStefano Zampini #define MATSEQDENSECUDA              "seqdensecuda"
8047d993e7Ssuyashtn #define MATSEQDENSEHIP               "seqdensehip"
81273d9f13SBarry Smith #define MATMPIDENSE                  "mpidense"
82637a0070SStefano Zampini #define MATMPIDENSECUDA              "mpidensecuda"
8347d993e7Ssuyashtn #define MATMPIDENSEHIP               "mpidensehip"
84db31f6deSJed Brown #define MATELEMENTAL                 "elemental"
85d24d4204SJose E. Roman #define MATSCALAPACK                 "scalapack"
865a11e1b2SBarry Smith #define MATBAIJ                      "baij"
87273d9f13SBarry Smith #define MATSEQBAIJ                   "seqbaij"
88273d9f13SBarry Smith #define MATMPIBAIJ                   "mpibaij"
89273d9f13SBarry Smith #define MATMPIADJ                    "mpiadj"
905a11e1b2SBarry Smith #define MATSBAIJ                     "sbaij"
91273d9f13SBarry Smith #define MATSEQSBAIJ                  "seqsbaij"
92273d9f13SBarry Smith #define MATMPISBAIJ                  "mpisbaij"
93cebc7f6cSBarry Smith #define MATMFFD                      "mffd"
94c8a8475eSBarry Smith #define MATNORMAL                    "normal"
95c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN           "normalh"
96ab92ecdeSBarry Smith #define MATLRC                       "lrc"
972a6744ebSBarry Smith #define MATSCATTER                   "scatter"
98421e10b8SBarry Smith #define MATBLOCKMAT                  "blockmat"
99793850ffSBarry Smith #define MATCOMPOSITE                 "composite"
1001f8c7532SHong Zhang #define MATFFT                       "fft"
1011f8c7532SHong Zhang #define MATFFTW                      "fftw"
102e133240eSMatthew G Knepley #define MATSEQCUFFT                  "seqcufft"
10347d993e7Ssuyashtn #define MATSEQHIPFFT                 "seqhipfft"
104*edd03b47SJacob Faibussowitsch #define MATTRANSPOSEMAT              PETSC_DEPRECATED_MACRO(3, 18, 0, "MATTRANSPOSEVIRTUAL", ) "transpose"
105013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL          "transpose"
106013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose"
10772ca8751SBarry Smith #define MATSCHURCOMPLEMENT           "schurcomplement"
1081d6018f0SLisandro Dalcin #define MATPYTHON                    "python"
10963c07aadSStefano Zampini #define MATHYPRE                     "hypre"
110f91d8e95SBarry Smith #define MATHYPRESTRUCT               "hyprestruct"
111a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT              "hypresstruct"
112ee1cef2cSJed Brown #define MATSUBMATRIX                 "submatrix"
1132c0dbf93SJed Brown #define MATLOCALREF                  "localref"
114d8588912SDave May #define MATNEST                      "nest"
115c094ef40SMatthew G. Knepley #define MATPREALLOCATOR              "preallocator"
116d4002b98SHong Zhang #define MATSELL                      "sell"
117d4002b98SHong Zhang #define MATSEQSELL                   "seqsell"
118d4002b98SHong Zhang #define MATMPISELL                   "mpisell"
1192d1451d4SHong Zhang #define MATSELLCUDA                  "sellcuda"
1202d1451d4SHong Zhang #define MATSEQSELLCUDA               "seqsellcuda"
1212d1451d4SHong Zhang #define MATMPISELLCUDA               "mpisellcuda"
122a3b2e22bSHong Zhang #define MATDUMMY                     "dummy"
123cd929ea3SAlp Dener #define MATLMVM                      "lmvm"
12478e4361aSAlp Dener #define MATLMVMDFP                   "lmvmdfp"
12578e4361aSAlp Dener #define MATLMVMBFGS                  "lmvmbfgs"
12678e4361aSAlp Dener #define MATLMVMSR1                   "lmvmsr1"
127864588a7SAlp Dener #define MATLMVMBROYDEN               "lmvmbroyden"
128864588a7SAlp Dener #define MATLMVMBADBROYDEN            "lmvmbadbroyden"
129864588a7SAlp Dener #define MATLMVMSYMBROYDEN            "lmvmsymbroyden"
130864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN         "lmvmsymbadbroyden"
131864588a7SAlp Dener #define MATLMVMDIAGBROYDEN           "lmvmdiagbroyden"
1323423f386SBarry Smith #define MATCONSTANTDIAGONAL          "constantdiagonal"
133345a4b08SToby Isaac #define MATDIAGONAL                  "diagonal"
134c7a4214aSPierre Jolivet #define MATHTOOL                     "htool"
13553022affSStefano Zampini #define MATH2OPUS                    "h2opus"
136773941d6SBarry Smith 
13776bdecfbSBarry Smith /*J
13816a05f60SBarry Smith     MatSolverType - String with the name of a PETSc factorization based matrix solver type.
1399989ab13SBarry Smith 
140c2b89b5dSBarry Smith     For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc
1419989ab13SBarry Smith 
1429989ab13SBarry Smith    Level: beginner
1439989ab13SBarry Smith 
1442ef1f0ffSBarry Smith    Note:
14516a05f60SBarry Smith    `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as
14616a05f60SBarry Smith    a ./configure option to install them
147c7ccbb75SBarry Smith 
1481cc06b55SBarry Smith .seealso: [](sec_matfactor), [](ch_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()`
14976bdecfbSBarry Smith J*/
150ea799195SBarry Smith typedef const char *MatSolverType;
1512692d6eeSBarry Smith #define MATSOLVERSUPERLU      "superlu"
1522692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST "superlu_dist"
15308f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK    "strumpack"
1542692d6eeSBarry Smith #define MATSOLVERUMFPACK      "umfpack"
15520db9a53SJed Brown #define MATSOLVERCHOLMOD      "cholmod"
156d89f5e7aSBarry Smith #define MATSOLVERKLU          "klu"
157d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL    "elemental"
158d24d4204SJose E. Roman #define MATSOLVERSCALAPACK    "scalapack"
1592692d6eeSBarry Smith #define MATSOLVERESSL         "essl"
1602692d6eeSBarry Smith #define MATSOLVERLUSOL        "lusol"
1612692d6eeSBarry Smith #define MATSOLVERMUMPS        "mumps"
162d615f992SSatish Balay #define MATSOLVERMKL_PARDISO  "mkl_pardiso"
163d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO "mkl_cpardiso"
1642692d6eeSBarry Smith #define MATSOLVERPASTIX       "pastix"
1652692d6eeSBarry Smith #define MATSOLVERMATLAB       "matlab"
1662692d6eeSBarry Smith #define MATSOLVERPETSC        "petsc"
1672692d6eeSBarry Smith #define MATSOLVERBAS          "bas"
1689ae82921SPaul Mullowney #define MATSOLVERCUSPARSE     "cusparse"
169bfc799aaSStefano Zampini #define MATSOLVERCUDA         "cuda"
17047d993e7Ssuyashtn #define MATSOLVERHIPSPARSE    "hipsparse"
17147d993e7Ssuyashtn #define MATSOLVERHIP          "hip"
172930e68a5SMark Adams #define MATSOLVERKOKKOS       "kokkos"
173a2fc1e05SToby Isaac #define MATSOLVERSPQR         "spqr"
174c0cdd4a1SDahai Guo 
175b24902e0SBarry Smith /*E
176b24902e0SBarry Smith     MatFactorType - indicates what type of factorization is requested
177b24902e0SBarry Smith 
1782ef1f0ffSBarry Smith     Values:
1792ef1f0ffSBarry Smith +  `MAT_FACTOR_LU` - LU factorization
1802ef1f0ffSBarry Smith .  `MAT_FACTOR_CHOLESKY` - Cholesky factorization
1812ef1f0ffSBarry Smith .  `MAT_FACTOR_ILU` - ILU factorization
1822ef1f0ffSBarry Smith .  `MAT_FACTOR_ICC` - incomplete Cholesky factorization
1832ef1f0ffSBarry Smith .  `MAT_FACTOR_ILUDT` - ILU factorization with drop tolerance
1842ef1f0ffSBarry Smith -  `MAT_FACTOR_QR` - QR factorization
185b24902e0SBarry Smith 
18616a05f60SBarry Smith     Level: beginner
18716a05f60SBarry Smith 
1881cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()`
189b24902e0SBarry Smith E*/
1909371c9d4SSatish Balay typedef enum {
1919371c9d4SSatish Balay   MAT_FACTOR_NONE,
1929371c9d4SSatish Balay   MAT_FACTOR_LU,
1939371c9d4SSatish Balay   MAT_FACTOR_CHOLESKY,
1949371c9d4SSatish Balay   MAT_FACTOR_ILU,
1959371c9d4SSatish Balay   MAT_FACTOR_ICC,
1969371c9d4SSatish Balay   MAT_FACTOR_ILUDT,
1979371c9d4SSatish Balay   MAT_FACTOR_QR,
1989371c9d4SSatish Balay   MAT_FACTOR_NUM_TYPES
1999371c9d4SSatish Balay } MatFactorType;
200014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[];
201e92e720dSBarry Smith 
202ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *);
203ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *);
204f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *);
205*edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 15, 0, "MatFactorGetCanUseOrdering()", ) static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b)
206d71ae5a4SJacob Faibussowitsch {
2079371c9d4SSatish Balay   return MatFactorGetCanUseOrdering(A, b);
2089371c9d4SSatish Balay }
209ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *);
210014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *);
2117abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType);
2122430ea28SJose E. Roman PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatSolverFunction)(Mat, MatFactorType, Mat *);
2132430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFunction);
2142430ea28SJose E. Roman PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFunction *);
215*edd03b47SJacob Faibussowitsch typedef MatSolverType       MatSolverPackage PETSC_DEPRECATED_TYPEDEF(3, 9, 0, "MatSolverType", );
216*edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeRegister()", ) static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFunction f)
217d71ae5a4SJacob Faibussowitsch {
2189371c9d4SSatish Balay   return MatSolverTypeRegister(stype, mtype, ftype, f);
2199371c9d4SSatish Balay }
220*edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeGet()", ) static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFunction *f)
221d71ae5a4SJacob Faibussowitsch {
2229371c9d4SSatish Balay   return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f);
2239371c9d4SSatish Balay }
2249989ab13SBarry Smith 
2254222ddf1SHong Zhang /*E
2264222ddf1SHong Zhang     MatProductType - indicates what type of matrix product is requested
2274222ddf1SHong Zhang 
2282ef1f0ffSBarry Smith     Values:
2292ef1f0ffSBarry Smith +  `MATPRODUCT_AB` - product of two matrices
2302ef1f0ffSBarry Smith .  `MATPRODUCT_AtB` - product of the transpose of a given matrix with a matrix
2312ef1f0ffSBarry Smith .  `MATPRODUCT_ABt` - product of a matrix with the transpose of another given matrix
2322ef1f0ffSBarry Smith .  `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself
2332ef1f0ffSBarry Smith .  `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix
2342ef1f0ffSBarry Smith -  `MATPRODUCT_ABC` - the product of three matrices
2352ef1f0ffSBarry Smith 
23616a05f60SBarry Smith     Level: beginner
23716a05f60SBarry Smith 
2381cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatProductSetType()`
2394222ddf1SHong Zhang E*/
2409371c9d4SSatish Balay typedef enum {
2419371c9d4SSatish Balay   MATPRODUCT_UNSPECIFIED = 0,
2429371c9d4SSatish Balay   MATPRODUCT_AB,
2439371c9d4SSatish Balay   MATPRODUCT_AtB,
2449371c9d4SSatish Balay   MATPRODUCT_ABt,
2459371c9d4SSatish Balay   MATPRODUCT_PtAP,
2469371c9d4SSatish Balay   MATPRODUCT_RARt,
2479371c9d4SSatish Balay   MATPRODUCT_ABC
2489371c9d4SSatish Balay } MatProductType;
249544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[];
2504222ddf1SHong Zhang 
2514222ddf1SHong Zhang /*J
2524222ddf1SHong Zhang     MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation
2534222ddf1SHong Zhang 
2544222ddf1SHong Zhang    Level: beginner
2554222ddf1SHong Zhang 
2561cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType`
2574222ddf1SHong Zhang J*/
2584222ddf1SHong Zhang typedef const char *MatProductAlgorithm;
2593e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT         "default"
2603e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED          "sorted"
2613e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE        "scalable"
2623e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST    "scalable_fast"
2633e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP            "heap"
2643e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP           "btheap"
2653e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED     "llcondensed"
2663e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE        "rowmerge"
2673e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT    "outerproduct"
2683e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB             "at*b"
2693e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP             "rap"
2703e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE     "nonscalable"
2713e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI          "seqmpi"
2723e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND         "backend"
2733e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING     "overlapping"
2743e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED          "merged"
2753e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE       "allatonce"
2763e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged"
2773e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV      "allgatherv"
2783e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC          "cyclic"
2793e662e0bSHong Zhang #if defined(PETSC_HAVE_HYPRE)
2803e662e0bSHong Zhang   #define MATPRODUCTALGORITHMHYPRE "hypre"
2813e662e0bSHong Zhang #endif
2824222ddf1SHong Zhang 
2834222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *);
2844222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat);
2854222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType);
2864222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm);
2874222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal);
2884222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat);
2894222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat);
2904222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat);
2914222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat);
2924417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat);
2936718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer);
294c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *);
295c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *);
2964222ddf1SHong Zhang 
297c06d978dSMatthew Knepley /* Logging support */
2980700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */
299014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID;
300335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID;
301014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID;
302014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID;
303014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID;
304014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID;
305014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID;
306014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID;
307c06d978dSMatthew Knepley 
308ceb03754SKris Buschelman /*E
3092ef1f0ffSBarry Smith     MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions
310cf37664fSBarry Smith      are to be reused to store the new matrix values.
311cf37664fSBarry Smith 
3122ef1f0ffSBarry Smith    Values:
3132ef1f0ffSBarry Smith +  `MAT_INITIAL_MATRIX` - create a new matrix
3142ef1f0ffSBarry Smith .  `MAT_REUSE_MATRIX` - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX`
3152ef1f0ffSBarry Smith .  `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions)
3162ef1f0ffSBarry Smith -  `MAT_IGNORE_MATRIX` - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions)
317ceb03754SKris Buschelman 
318ceb03754SKris Buschelman     Level: beginner
319ceb03754SKris Buschelman 
3201cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()`
321ceb03754SKris Buschelman E*/
3229371c9d4SSatish Balay typedef enum {
3239371c9d4SSatish Balay   MAT_INITIAL_MATRIX,
3249371c9d4SSatish Balay   MAT_REUSE_MATRIX,
3259371c9d4SSatish Balay   MAT_IGNORE_MATRIX,
3269371c9d4SSatish Balay   MAT_INPLACE_MATRIX
3279371c9d4SSatish Balay } MatReuse;
328ceb03754SKris Buschelman 
3295494a064SHong Zhang /*E
3302ef1f0ffSBarry Smith     MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()`
3312ef1f0ffSBarry Smith      include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`.
3325494a064SHong Zhang 
3332ef1f0ffSBarry Smith     Level: developer
3345494a064SHong Zhang 
3352ef1f0ffSBarry Smith     Values:
3362ef1f0ffSBarry Smith +  `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values
3372ef1f0ffSBarry Smith -  `MAT_GET_VALUES` - copy the matrix values
3382ef1f0ffSBarry Smith 
3392ef1f0ffSBarry Smith     Developer Note:
3402ef1f0ffSBarry Smith     Why is not just a boolean used for this information?
3412ef1f0ffSBarry Smith 
3421cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()`
3435494a064SHong Zhang E*/
3449371c9d4SSatish Balay typedef enum {
3459371c9d4SSatish Balay   MAT_DO_NOT_GET_VALUES,
3469371c9d4SSatish Balay   MAT_GET_VALUES
3479371c9d4SSatish Balay } MatCreateSubMatrixOption;
3485494a064SHong Zhang 
349607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void);
350c06d978dSMatthew Knepley 
351014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *);
352014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt);
35319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType);
3540d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *);
3550d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType);
356014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat);
357fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]);
358bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat));
35923bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]);
360014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]);
36126cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]);
36226cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]);
363014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]);
364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]);
36584d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool);
366f69a0ea3SMatthew Knepley 
367140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList;
368140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList;
369140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList;
37028988994SBarry Smith 
3713b224e63SBarry Smith /*E
372aa6c7ce3SBarry Smith     MatStructure - Indicates if two matrices have the same nonzero structure
3733b224e63SBarry Smith 
3742ef1f0ffSBarry Smith    Values:
3752ef1f0ffSBarry Smith +  `SAME_NONZERO_PATTERN`  - the two matrices have identical nonzero patterns
3762ef1f0ffSBarry Smith .  `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns
3772ef1f0ffSBarry Smith .  `SUBSET_NONZERO_PATTERN` - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix
3782ef1f0ffSBarry Smith -  `UNKNOWN_NONZERO_PATTERN` - there is no known relationship between the nonzero patterns. In this case the implementations
3792ef1f0ffSBarry Smith                                may try to detect a relationship to optimize the operation
380531d0c6aSBarry Smith 
38116a05f60SBarry Smith     Level: beginner
38216a05f60SBarry Smith 
3831cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()`
3843b224e63SBarry Smith E*/
3859371c9d4SSatish Balay typedef enum {
3869371c9d4SSatish Balay   DIFFERENT_NONZERO_PATTERN,
3879371c9d4SSatish Balay   SUBSET_NONZERO_PATTERN,
3889371c9d4SSatish Balay   SAME_NONZERO_PATTERN,
3899371c9d4SSatish Balay   UNKNOWN_NONZERO_PATTERN
3909371c9d4SSatish Balay } MatStructure;
391d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[];
3923b224e63SBarry Smith 
3939779e05dSSatish Balay #if defined                 PETSC_HAVE_MKL_SPARSE
394ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
395ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
39680095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
397ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
39880095d54SIrina Sokolova #endif
399cd929ea3SAlp Dener 
400d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
401d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
402d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]);
403d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
40407e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *);
40507e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *);
40607e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *);
40707e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt);
408b921024eSHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *);
40980095d54SIrina Sokolova 
410014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
411014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
412014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
413014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
414014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4158f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4166a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]);
417014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *);
4183b00a383SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *);
4193b00a383SHong Zhang 
420014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
421014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
422014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4237e8381f9SStefano Zampini 
424e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]);
42582a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]);
4267e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode);
427d21a29f3SJed Brown 
428014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *);
429014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
430d21a29f3SJed Brown 
431014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
432014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
43338f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
434014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4354cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]);
436dfb205c3SBarry Smith 
437014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *);
438c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *);
439014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *);
440c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *);
441986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *);
442267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *);
443bcf2175cSMatthew Knepley PETSC_EXTERN PetscErrorCode MatLRCSetMats(Mat, Mat, Mat, Vec, Mat);
444c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *);
445014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
446014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
447c0cdd4a1SDahai Guo 
448014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *);
449014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter);
450014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *);
451014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *);
452014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat);
453014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat);
4549371c9d4SSatish Balay typedef enum {
4559371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_RIGHT,
4569371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_LEFT
4579371c9d4SSatish Balay } MatCompositeMergeType;
4588c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType);
459014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *);
4609371c9d4SSatish Balay typedef enum {
4619371c9d4SSatish Balay   MAT_COMPOSITE_ADDITIVE,
4629371c9d4SSatish Balay   MAT_COMPOSITE_MULTIPLICATIVE
4639371c9d4SSatish Balay } MatCompositeType;
464014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType);
4656dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *);
4663b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure);
4673b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *);
4686d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *);
4698b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *);
47003049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *);
4716d7c1e57SBarry Smith 
47219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *);
473014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *);
474dedccee8SHong Zhang 
475014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *);
4768060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *);
477d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *);
47806511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *);
479fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *);
48065f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *);
48154e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *);
48254e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS);
483014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *);
4843423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *);
485345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatCreateDiagonal(Vec, Mat *);
486345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetDiagonal(Mat, Vec *);
487345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreDiagonal(Mat, Vec *);
488345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetInverseDiagonal(Mat, Vec *);
489345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreInverseDiagonal(Mat, Vec *);
4901472f72bSBarry Smith 
491978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE)
492d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
493978814f1SStefano Zampini #endif
494978814f1SStefano Zampini 
495014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]);
496ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]);
4971d6018f0SLisandro Dalcin 
498846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat);
499014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat);
500014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *);
501e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *);
50221c89e3eSBarry Smith 
503014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat);
504014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat);
505014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat);
506014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *);
507014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *);
508713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **);
5090da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *);
510479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat);
5118a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *);
51299cafbc1SBarry Smith 
513014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
5148a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode);
515014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
516014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]);
517014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]);
518014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]);
51973a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom);
52084cb2905SBarry Smith 
5212ef4de8bSBarry Smith /*S
5222ef1f0ffSBarry Smith      MatStencil - Data structure (C struct) for storing information about rows and
5232ef1f0ffSBarry Smith         columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()`
52462ef0227SBarry Smith 
5252ef1f0ffSBarry Smith    Level: beginner
5262ef1f0ffSBarry Smith 
5272ef1f0ffSBarry Smith    Notes:
52862ef0227SBarry Smith    The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored).
52987497f52SBarry Smith    The c represents the the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored.
53062ef0227SBarry Smith 
53187497f52SBarry Smith    For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`.
532be479b30SJed Brown 
5332ef1f0ffSBarry Smith    For staggered grids, see `DMStagStencil`
5342ef4de8bSBarry Smith 
5352ef1f0ffSBarry Smith    Fortran Note:
5362ef1f0ffSBarry Smith    See `MatSetValuesStencil()` for details.
5372ef4de8bSBarry Smith 
5381cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`,
5392ef1f0ffSBarry Smith           `DMStagStencil`
5402ef4de8bSBarry Smith S*/
541435da068SBarry Smith typedef struct {
542c1ac3661SBarry Smith   PetscInt k, j, i, c;
543435da068SBarry Smith } MatStencil;
5442ef4de8bSBarry Smith 
545014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
546014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
547014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt);
548435da068SBarry Smith 
549d91e6319SBarry Smith /*E
5502ef1f0ffSBarry Smith     MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use
551d91e6319SBarry Smith 
5522ef1f0ffSBarry Smith     Values:
5532ef1f0ffSBarry Smith +   `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix
5542ef1f0ffSBarry Smith -   `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted
5552ef1f0ffSBarry Smith 
55616a05f60SBarry Smith     Level: beginner
55716a05f60SBarry Smith 
5581cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()`
559d91e6319SBarry Smith E*/
5609371c9d4SSatish Balay typedef enum {
5619371c9d4SSatish Balay   MAT_FLUSH_ASSEMBLY = 1,
5629371c9d4SSatish Balay   MAT_FINAL_ASSEMBLY = 0
5639371c9d4SSatish Balay } MatAssemblyType;
564014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType);
565014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType);
566014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *);
5674f9c727eSBarry Smith 
568d91e6319SBarry Smith /*E
5692ef1f0ffSBarry Smith     MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage
570d91e6319SBarry Smith 
571d91e6319SBarry Smith     Level: beginner
572d91e6319SBarry Smith 
5732ef1f0ffSBarry Smith    Note:
5742ef1f0ffSBarry Smith    See `MatSetOption()` for the use of the options
5752ef1f0ffSBarry Smith 
5762ef1f0ffSBarry Smith    Developer Note:
57795452b02SPatrick Sanan    Entries that are negative need not be called collectively by all processes.
578382164b0SBarry Smith 
5791cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetOption()`
580d91e6319SBarry Smith E*/
5819371c9d4SSatish Balay typedef enum {
5829371c9d4SSatish Balay   MAT_OPTION_MIN                  = -3,
583c5e4d11fSDmitry Karpeev   MAT_UNUSED_NONZERO_LOCATION_ERR = -2,
58492d4d306SBarry Smith   MAT_ROW_ORIENTED                = -1,
585382164b0SBarry Smith   MAT_SYMMETRIC                   = 1,
586382164b0SBarry Smith   MAT_STRUCTURALLY_SYMMETRIC      = 2,
5878c78258cSHong Zhang   MAT_FORCE_DIAGONAL_ENTRIES      = 3,
588382164b0SBarry Smith   MAT_IGNORE_OFF_PROC_ENTRIES     = 4,
589382164b0SBarry Smith   MAT_USE_HASH_TABLE              = 5,
590382164b0SBarry Smith   MAT_KEEP_NONZERO_PATTERN        = 6,
591382164b0SBarry Smith   MAT_IGNORE_ZERO_ENTRIES         = 7,
592382164b0SBarry Smith   MAT_USE_INODES                  = 8,
593382164b0SBarry Smith   MAT_HERMITIAN                   = 9,
594382164b0SBarry Smith   MAT_SYMMETRY_ETERNAL            = 10,
595c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_LOCATION_ERR    = 11,
596382164b0SBarry Smith   MAT_IGNORE_LOWER_TRIANGULAR     = 12,
597382164b0SBarry Smith   MAT_ERROR_LOWER_TRIANGULAR      = 13,
598382164b0SBarry Smith   MAT_GETROW_UPPERTRIANGULAR      = 14,
599382164b0SBarry Smith   MAT_SPD                         = 15,
60092d4d306SBarry Smith   MAT_NO_OFF_PROC_ZERO_ROWS       = 16,
60192d4d306SBarry Smith   MAT_NO_OFF_PROC_ENTRIES         = 17,
60292d4d306SBarry Smith   MAT_NEW_NONZERO_LOCATIONS       = 18,
603c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_ALLOCATION_ERR  = 19,
604c5e4d11fSDmitry Karpeev   MAT_SUBSET_OFF_PROC_ENTRIES     = 20,
605c10200c1SHong Zhang   MAT_SUBMAT_SINGLEIS             = 21,
606957cac9fSHong Zhang   MAT_STRUCTURE_ONLY              = 22,
607071fcb05SBarry Smith   MAT_SORTED_FULL                 = 23,
6081a2c6b5cSJunchao Zhang   MAT_FORM_EXPLICIT_TRANSPOSE     = 24,
609b94d7dedSBarry Smith   MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25,
610b94d7dedSBarry Smith   MAT_SPD_ETERNAL                 = 26,
6119371c9d4SSatish Balay   MAT_OPTION_MAX                  = 27
6129371c9d4SSatish Balay } MatOption;
613e057df02SPaul Mullowney 
6140f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions;
615014dd563SJed Brown PETSC_EXTERN PetscErrorCode     MatSetOption(Mat, MatOption, PetscBool);
6167d68702bSBarry Smith PETSC_EXTERN PetscErrorCode     MatGetOption(Mat, MatOption, PetscBool *);
617856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode     MatPropagateSymmetryOptions(Mat, Mat);
61819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode     MatGetType(Mat, MatType *);
61984cb2905SBarry Smith 
620014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
621014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
622014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
623014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRowUpperTriangular(Mat);
624014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRowUpperTriangular(Mat);
625014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetColumnVector(Mat, Vec, PetscInt);
6268c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArray(Mat, PetscScalar *[]);
6278f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]);
628d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]);
6298c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArray(Mat, PetscScalar *[]);
6308f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]);
631d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]);
63221e72a00SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *);
633bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
6344099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetType(Mat, MatType);
635ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode    MatSeqAIJKron(Mat, Mat, MatReuse, Mat *);
636388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode    MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *));
6374099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList;
638cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJGetArray(Mat, PetscScalar *[]);
639cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJRestoreArray(Mat, PetscScalar *[]);
6408397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJGetArray(Mat, PetscScalar *[]);
6418397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]);
6428c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArray(Mat, PetscScalar *[]);
6438c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArray(Mat, PetscScalar *[]);
644d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDensePlaceArray(Mat, const PetscScalar[]);
645d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseReplaceArray(Mat, const PetscScalar[]);
646d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseResetArray(Mat);
6478572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArrayRead(Mat, const PetscScalar *[]);
6488572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayRead(Mat, const PetscScalar *[]);
6496947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWrite(Mat, PetscScalar *[]);
6506947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWrite(Mat, PetscScalar *[]);
651cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *);
652cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]);
653cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *);
654cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]);
655cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *);
656cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]);
657014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSize(Mat, PetscInt *);
658014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSize(Mat, PetscInt);
659014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSizes(Mat, PetscInt *, PetscInt *);
660014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizes(Mat, PetscInt, PetscInt);
66133d57670SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizesFromMats(Mat, Mat, Mat);
6620da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode    MatSetVariableBlockSizes(Mat, PetscInt, PetscInt *);
6630da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode    MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt **);
6640da83c2eSBarry Smith 
66586aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]);
66686aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]);
6676947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *);
6686947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *);
6696947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *);
6706947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *);
6716947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *);
6726947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *);
673a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
6745ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *);
6751620fd73SBarry Smith 
676014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec);
677014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec);
678014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec);
679014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec);
680014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec);
681014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *);
682014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *);
683014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec);
684014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec);
685014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat);
686bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat);
687eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat);
688f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec);
689f5edf698SHong Zhang 
690d91e6319SBarry Smith /*E
691d91e6319SBarry Smith     MatDuplicateOption - Indicates if a duplicated sparse matrix should have
692d91e6319SBarry Smith   its numerical values copied over or just its nonzero structure.
693d91e6319SBarry Smith 
6942ef1f0ffSBarry Smith     Values:
6952ef1f0ffSBarry Smith +   `MAT_DO_NOT_COPY_VALUES`    - Create a matrix using the same nonzero pattern as the original matrix,
6962ef1f0ffSBarry Smith                                with zeros for the numerical values
6972ef1f0ffSBarry Smith .   `MAT_COPY_VALUES`           - Create a matrix with the same nonzero pattern as the original matrix
6982ef1f0ffSBarry Smith                                and with the same numerical values.
6992ef1f0ffSBarry Smith -   `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix
7002ef1f0ffSBarry Smith                                and does not copy it, using zeros for the numerical values. The parent and
7012ef1f0ffSBarry Smith                                child matrices will share their index (i and j) arrays, and you cannot
7022ef1f0ffSBarry Smith                                insert new nonzero entries into either matrix
7030018da39SRichard Tran Mills 
70416a05f60SBarry Smith     Level: beginner
70516a05f60SBarry Smith 
70687497f52SBarry Smith   Note:
70787497f52SBarry Smith   Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in
70887497f52SBarry Smith   this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified.
70970dcbbb9SBarry Smith 
7101cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicate()`
711d91e6319SBarry Smith E*/
7129371c9d4SSatish Balay typedef enum {
7139371c9d4SSatish Balay   MAT_DO_NOT_COPY_VALUES,
7149371c9d4SSatish Balay   MAT_COPY_VALUES,
7159371c9d4SSatish Balay   MAT_SHARE_NONZERO_PATTERN
7169371c9d4SSatish Balay } MatDuplicateOption;
7172e8a6d31SBarry Smith 
71819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *);
719014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *);
72094a9d846SBarry Smith 
721014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure);
722014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer);
723014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *);
724014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *);
725014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *);
726014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *);
727014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *);
728b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *);
729b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *);
730014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *);
731014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer);
7327b80b807SBarry Smith 
7331a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7341a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7351a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7361a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
737d4fbbf0eSBarry Smith 
738d91e6319SBarry Smith /*S
73987497f52SBarry Smith      MatInfo - Context of matrix information, used with `MatGetInfo()`
740d91e6319SBarry Smith 
741d91e6319SBarry Smith    Level: intermediate
742d91e6319SBarry Smith 
7432ef1f0ffSBarry Smith    Fortran Note:
7442ef1f0ffSBarry Smith    Information is stored as a double-precision array of dimension `MAT_INFO_SIZE`
7452ef1f0ffSBarry Smith 
7461cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetInfo()`, `MatInfoType`
747d91e6319SBarry Smith S*/
7484e220ebcSLois Curfman McInnes typedef struct {
749b0a32e0cSBarry Smith   PetscLogDouble block_size;                          /* block size */
750b0a32e0cSBarry Smith   PetscLogDouble nz_allocated, nz_used, nz_unneeded;  /* number of nonzeros */
751b0a32e0cSBarry Smith   PetscLogDouble memory;                              /* memory allocated */
752b0a32e0cSBarry Smith   PetscLogDouble assemblies;                          /* number of matrix assemblies called */
753b0a32e0cSBarry Smith   PetscLogDouble mallocs;                             /* number of mallocs during MatSetValues() */
754b0a32e0cSBarry Smith   PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */
755b0a32e0cSBarry Smith   PetscLogDouble factor_mallocs;                      /* number of mallocs during factorization */
7564e220ebcSLois Curfman McInnes } MatInfo;
7574e220ebcSLois Curfman McInnes 
758d9274352SBarry Smith /*E
759d9274352SBarry Smith     MatInfoType - Indicates if you want information about the local part of the matrix,
760d9274352SBarry Smith      the entire parallel matrix or the maximum over all the local parts.
761d9274352SBarry Smith 
7622ef1f0ffSBarry Smith     Values:
7632ef1f0ffSBarry Smith +   `MAT_LOCAL` - values for each MPI process part of the matrix
7642ef1f0ffSBarry Smith .   `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes
7652ef1f0ffSBarry Smith -   `MAT_GLOBAL_SUM` - sum of each value over all MPI processes
766d9274352SBarry Smith 
76716a05f60SBarry Smith     Level: beginner
76816a05f60SBarry Smith 
7691cc06b55SBarry Smith .seealso: [](ch_matrices), `MatGetInfo()`, `MatInfo`
770d9274352SBarry Smith E*/
7719371c9d4SSatish Balay typedef enum {
7729371c9d4SSatish Balay   MAT_LOCAL      = 1,
7739371c9d4SSatish Balay   MAT_GLOBAL_MAX = 2,
7749371c9d4SSatish Balay   MAT_GLOBAL_SUM = 3
7759371c9d4SSatish Balay } MatInfoType;
776014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *);
777014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec);
778014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]);
779014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]);
780014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]);
781014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]);
782014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec);
783014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *);
7847fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *);
7857fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat);
786014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *);
787014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *);
788014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec);
789014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode);
790a52676ecSHong Zhang 
791014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *);
792014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *);
793014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *);
794014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
795014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
796e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
797e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
798a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
799a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
800cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
8014222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
802447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
80386919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *);
8047b80b807SBarry Smith 
805014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *);
806014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *);
807857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *);
808857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *);
809857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *);
810857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *);
811857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *);
812857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *);
813857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *);
814014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat);
8151b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat);
816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec);
818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec);
8227b80b807SBarry Smith 
823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *);
824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *);
825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *);
826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **);
827014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *);
828014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **);
829566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *);
8305ef9f2a5SBarry Smith 
8317dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
832*edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrices()", ) static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
833d71ae5a4SJacob Faibussowitsch {
8349371c9d4SSatish Balay   return MatCreateSubMatrices(mat, n, irow, icol, scall, submat);
8359371c9d4SSatish Balay }
8367dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
837*edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatricesMPI()", ) static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
838d71ae5a4SJacob Faibussowitsch {
8399371c9d4SSatish Balay   return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat);
8409371c9d4SSatish Balay }
841014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]);
842df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]);
8437dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *);
844*edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrix()", ) static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat)
845d71ae5a4SJacob Faibussowitsch {
8469371c9d4SSatish Balay   return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat);
8479371c9d4SSatish Balay }
848014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *);
849014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *);
850014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *);
851014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *);
8527b80b807SBarry Smith 
853014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *);
854014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *);
855014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat);
856014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *);
8578a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *);
858014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
859ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *);
860f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *);
861014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *);
862014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]);
8638efafbd8SBarry Smith 
864014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt);
865aa1e27eaSFande Kong PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov);
866d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool);
8677b80b807SBarry Smith 
868014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
86922440eb1SKris Buschelman 
8707bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
8712df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
8727bab7c10SHong Zhang 
873014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *);
874014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *);
87522440eb1SKris Buschelman 
876014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
877014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *);
878bc011b1eSHong Zhang 
879014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure);
880014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure);
8811c741599SHong Zhang 
882014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar);
883014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar);
8847b80b807SBarry Smith 
885014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping);
886014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
887a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *);
88881fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout);
889014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
890014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
891014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
892014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
893e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
894014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
895014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
896052efed2SBarry Smith 
897014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt);
898014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *);
89990f02eecSBarry Smith 
900014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec);
901014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec);
902014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec);
90330b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *);
90430b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *);
90530b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *);
9062a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *);
907*edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 6, 0, "MatCreateVecs()", ) static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y)
908d71ae5a4SJacob Faibussowitsch {
9099371c9d4SSatish Balay   return MatCreateVecs(mat, x, y);
9109371c9d4SSatish Balay }
91153cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *);
912014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *);
913014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *);
9143a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *);
9159c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *);
916bd481603SBarry Smith 
917bd481603SBarry Smith /*MC
9181620fd73SBarry Smith    MatSetValue - Set a single entry into a matrix.
9191620fd73SBarry Smith 
920e1c5b2e2SJose E. Roman    This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()`
921e1c5b2e2SJose E. Roman    MUST be called after all calls to `MatSetValue()` have been completed.
9221620fd73SBarry Smith 
923a9834a7dSSatish Balay    Synopsis:
924a9834a7dSSatish Balay      #include <petscmat.h>
925e1c5b2e2SJose E. Roman      PetscErrorCode MatSetValue(Mat m,PetscInt i,PetscInt j,PetscScalar va,InsertMode mode)
926e1c5b2e2SJose E. Roman 
927e1c5b2e2SJose E. Roman    Not Collective
928a9834a7dSSatish Balay 
9291620fd73SBarry Smith    Input Parameters:
9301620fd73SBarry Smith +  m - the matrix
93116a05f60SBarry Smith .  i - the row location of the entry
93216a05f60SBarry Smith .  j - the column location of the entry
93316a05f60SBarry Smith .  va - the value to insert
93487497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
9351620fd73SBarry Smith 
9361620fd73SBarry Smith    Level: beginner
9371620fd73SBarry Smith 
9382ef1f0ffSBarry Smith    Note:
9392ef1f0ffSBarry Smith    For efficiency one should use `MatSetValues()` and set several values simultaneously.
9402ef1f0ffSBarry Smith 
9411cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `InsertMode`, `MatGetValue()`, `MatSetValues()`,
9422ef1f0ffSBarry Smith           `MatSetValueLocal()`, `MatSetValuesLocal()`
9431620fd73SBarry Smith M*/
94416a05f60SBarry Smith static inline PetscErrorCode MatSetValue(Mat m, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
945d71ae5a4SJacob Faibussowitsch {
94616a05f60SBarry Smith   return MatSetValues(m, 1, &i, 1, &j, &va, mode);
9479371c9d4SSatish Balay }
9481620fd73SBarry Smith 
949e5e5a7b5SPatrick Sanan /*@C
950e5e5a7b5SPatrick Sanan    MatGetValue - Gets a single value from a matrix
9511620fd73SBarry Smith 
952e5e5a7b5SPatrick Sanan    Not Collective; can only return a value owned by the given process
953e5e5a7b5SPatrick Sanan 
954e5e5a7b5SPatrick Sanan    Input Parameters:
955e5e5a7b5SPatrick Sanan +  mat - the matrix
956e5e5a7b5SPatrick Sanan .  row - the row location of the entry
957e5e5a7b5SPatrick Sanan -  col - the column location of the entry
958e5e5a7b5SPatrick Sanan 
959e5e5a7b5SPatrick Sanan    Output Parameter:
960e5e5a7b5SPatrick Sanan .  va - the value
961e5e5a7b5SPatrick Sanan 
9622ef1f0ffSBarry Smith    Level: advanced
9632ef1f0ffSBarry Smith 
964e5e5a7b5SPatrick Sanan    Notes:
9652ef1f0ffSBarry Smith    The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd` before this call
9662ef1f0ffSBarry Smith 
96787497f52SBarry Smith    For efficiency one should use `MatGetValues()` and get several values simultaneously.
968e5e5a7b5SPatrick Sanan 
96987497f52SBarry Smith    See notes for `MatGetValues()`.
970e5e5a7b5SPatrick Sanan 
9711cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()`
972e5e5a7b5SPatrick Sanan @*/
973d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va)
974d71ae5a4SJacob Faibussowitsch {
9759371c9d4SSatish Balay   return MatGetValues(mat, 1, &row, 1, &col, va);
9769371c9d4SSatish Balay }
977e5e5a7b5SPatrick Sanan 
978e5e5a7b5SPatrick Sanan /*MC
9792ef1f0ffSBarry Smith    MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes.
980e5e5a7b5SPatrick Sanan 
981e5e5a7b5SPatrick Sanan    Not Collective
982e5e5a7b5SPatrick Sanan 
983e5e5a7b5SPatrick Sanan    Input Parameters:
984e5e5a7b5SPatrick Sanan +  m - the matrix
98516a05f60SBarry Smith .  i - the row location of the entry
98616a05f60SBarry Smith .  j - the column location of the entry
98716a05f60SBarry Smith .  va - the value to insert
98887497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
989e5e5a7b5SPatrick Sanan 
9902ef1f0ffSBarry Smith    Level: intermediate
9912ef1f0ffSBarry Smith 
992e5e5a7b5SPatrick Sanan    Notes:
99387497f52SBarry Smith    For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously.
994e5e5a7b5SPatrick Sanan 
99587497f52SBarry Smith    See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used.
996e5e5a7b5SPatrick Sanan 
9971cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSetValue()`, `MatSetValuesLocal()`
998e5e5a7b5SPatrick Sanan M*/
99916a05f60SBarry Smith static inline PetscErrorCode MatSetValueLocal(Mat m, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
1000d71ae5a4SJacob Faibussowitsch {
100116a05f60SBarry Smith   return MatSetValuesLocal(m, 1, &i, 1, &j, &va, mode);
10029371c9d4SSatish Balay }
10031620fd73SBarry Smith 
10041620fd73SBarry Smith /*MC
1005d0609cedSBarry Smith    MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per
1006bd481603SBarry Smith        row in a matrix providing the data that one can use to correctly preallocate the matrix.
1007bd481603SBarry Smith 
1008bd481603SBarry Smith    Synopsis:
1009aaa7dc30SBarry Smith    #include <petscmat.h>
1010d0609cedSBarry Smith    PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz)
1011bd481603SBarry Smith 
1012d083f849SBarry Smith    Collective
1013bd481603SBarry Smith 
1014bd481603SBarry Smith    Input Parameters:
1015bd481603SBarry Smith +  comm - the communicator that will share the eventually allocated matrix
1016859fcb39SBarry Smith .  nrows - the number of LOCAL rows in the matrix
1017859fcb39SBarry Smith -  ncols - the number of LOCAL columns in the matrix
1018bd481603SBarry Smith 
1019bd481603SBarry Smith    Output Parameters:
1020bd481603SBarry Smith +  dnz - the array that will be passed to the matrix preallocation routines
1021a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1022bd481603SBarry Smith 
10232ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1024bd481603SBarry Smith 
1025bd481603SBarry Smith    Notes:
10262ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
10272ef1f0ffSBarry Smith    the use of this routine
10282ef1f0ffSBarry Smith 
1029d0609cedSBarry Smith    This is a macro that handles its own error checking, it does not return an error code.
1030d0609cedSBarry Smith 
10312ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1032bd481603SBarry Smith 
10332ef1f0ffSBarry Smith    Developer Note:
10342ef1f0ffSBarry Smith     This is a MACRO not a function because it has a leading { that is closed by `PetscPreallocateFinalize()`.
1035bd481603SBarry Smith 
10361cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1037db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1038bd481603SBarry Smith M*/
10399371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \
10409371c9d4SSatish Balay   do { \
10413ba16761SJacob Faibussowitsch     PetscInt              __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \
10423ba16761SJacob Faibussowitsch     PetscInt PETSC_UNUSED __start; \
10439566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \
10449566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \
10459371c9d4SSatish Balay     __start = __end - __ncols; \
10469371c9d4SSatish Balay     (void)__start; \
10479566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \
10485f80ce2aSJacob Faibussowitsch   __rstart -= __nrows
10497c922b88SBarry Smith 
1050*edd03b47SJacob Faibussowitsch #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateBegin()", ) MatPreallocateBegin(__VA_ARGS__)
1051d0609cedSBarry Smith 
1052bd481603SBarry Smith /*MC
1053bd481603SBarry Smith    MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1054bd481603SBarry Smith        inserted using a local number of the rows and columns
1055bd481603SBarry Smith 
1056bd481603SBarry Smith    Synopsis:
1057aaa7dc30SBarry Smith    #include <petscmat.h>
1058c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1059bd481603SBarry Smith 
1060bd481603SBarry Smith    Not Collective
1061bd481603SBarry Smith 
1062bd481603SBarry Smith    Input Parameters:
1063784ac674SJed Brown +  map - the row mapping from local numbering to global numbering
1064bd481603SBarry Smith .  nrows - the number of rows indicated
10651d73ed98SBarry Smith .  rows - the indices of the rows
1066784ac674SJed Brown .  cmap - the column mapping from local to global numbering
1067bd481603SBarry Smith .  ncols - the number of columns in the matrix
1068bd481603SBarry Smith .  cols - the columns indicated
1069bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1070a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1071bd481603SBarry Smith 
10722ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1073bd481603SBarry Smith 
1074bd481603SBarry Smith    Notes:
10752ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
10762ef1f0ffSBarry Smith    the use of this routine
1077bd481603SBarry Smith 
10782ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1079bd481603SBarry Smith 
10801cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1081db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()`
1082bd481603SBarry Smith M*/
108394bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
10849371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1085c4f061fbSSatish Balay 
1086bd481603SBarry Smith /*MC
1087c1154cd5SBarry Smith    MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1088c1154cd5SBarry Smith        inserted using a local number of the rows and columns. This version removes any duplicate columns in cols
1089c1154cd5SBarry Smith 
1090c1154cd5SBarry Smith    Synopsis:
1091c1154cd5SBarry Smith    #include <petscmat.h>
1092c1154cd5SBarry Smith    PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1093c1154cd5SBarry Smith 
1094c1154cd5SBarry Smith    Not Collective
1095c1154cd5SBarry Smith 
1096c1154cd5SBarry Smith    Input Parameters:
1097c1154cd5SBarry Smith +  map - the row mapping from local numbering to global numbering
1098c1154cd5SBarry Smith .  nrows - the number of rows indicated
1099c1154cd5SBarry Smith .  rows - the indices of the rows (these values are mapped to the global values)
1100c1154cd5SBarry Smith .  cmap - the column mapping from local to global numbering
1101c1154cd5SBarry Smith .  ncols - the number of columns in the matrix   (this value will be changed if duplicate columns are found)
1102c1154cd5SBarry Smith .  cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed)
1103c1154cd5SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1104a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1105c1154cd5SBarry Smith 
11062ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1107c1154cd5SBarry Smith 
1108c1154cd5SBarry Smith    Notes:
11092ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11102ef1f0ffSBarry Smith    the use of this routine
1111c1154cd5SBarry Smith 
11122ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1113c1154cd5SBarry Smith 
11141cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1115db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1116c1154cd5SBarry Smith M*/
111794bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11189371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1119c1154cd5SBarry Smith 
1120c1154cd5SBarry Smith /*MC
1121d6e23781SBarry Smith    MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1122bd481603SBarry Smith        inserted using a local number of the rows and columns
1123bd481603SBarry Smith 
1124bd481603SBarry Smith    Synopsis:
1125aaa7dc30SBarry Smith    #include <petscmat.h>
1126d6e23781SBarry Smith    PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1127d6e23781SBarry Smith 
1128d6e23781SBarry Smith    Not Collective
1129d6e23781SBarry Smith 
1130d6e23781SBarry Smith    Input Parameters:
1131d6e23781SBarry Smith +  map - the row mapping from local numbering to global numbering
1132d6e23781SBarry Smith .  nrows - the number of rows indicated
1133d6e23781SBarry Smith .  rows - the indices of the rows
1134d6e23781SBarry Smith .  cmap - the column mapping from local to global numbering
1135d6e23781SBarry Smith .  ncols - the number of columns in the matrix
1136d6e23781SBarry Smith .  cols - the columns indicated
1137d6e23781SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1138a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1139d6e23781SBarry Smith 
11402ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1141d6e23781SBarry Smith 
1142d6e23781SBarry Smith    Notes:
11432ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11442ef1f0ffSBarry Smith    the use of this routine
1145d6e23781SBarry Smith 
11462ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1147d6e23781SBarry Smith 
11481cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1149db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`
1150d6e23781SBarry Smith M*/
115194bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11529371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1153d6e23781SBarry Smith 
1154d6e23781SBarry Smith /*MC
1155d6e23781SBarry Smith    MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1156d6e23781SBarry Smith        inserted using a local number of the rows and columns
1157d6e23781SBarry Smith 
1158d6e23781SBarry Smith    Synopsis:
1159d6e23781SBarry Smith    #include <petscmat.h>
1160d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1161bd481603SBarry Smith 
1162bd481603SBarry Smith    Not Collective
1163bd481603SBarry Smith 
1164bd481603SBarry Smith    Input Parameters:
1165bd481603SBarry Smith +  map - the mapping between local numbering and global numbering
1166bd481603SBarry Smith .  nrows - the number of rows indicated
11671d73ed98SBarry Smith .  rows - the indices of the rows
1168bd481603SBarry Smith .  ncols - the number of columns in the matrix
1169bd481603SBarry Smith .  cols - the columns indicated
1170bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1171a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1172bd481603SBarry Smith 
11732ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1174bd481603SBarry Smith 
1175bd481603SBarry Smith    Notes:
11762ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11772ef1f0ffSBarry Smith    the use of this routine
1178bd481603SBarry Smith 
11792ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1180bd481603SBarry Smith 
11811cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`
1182db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1183bd481603SBarry Smith M*/
118494bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \
11859371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));)
1186e83a5d19SLisandro Dalcin 
1187bd481603SBarry Smith /*MC
1188bd481603SBarry Smith    MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1189bd481603SBarry Smith        inserted using a local number of the rows and columns
1190bd481603SBarry Smith 
1191bd481603SBarry Smith    Synopsis:
1192aaa7dc30SBarry Smith    #include <petscmat.h>
1193c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1194bd481603SBarry Smith 
1195bd481603SBarry Smith    Not Collective
1196bd481603SBarry Smith 
1197bd481603SBarry Smith    Input Parameters:
119864075487SBarry Smith +  row - the row
1199bd481603SBarry Smith .  ncols - the number of columns in the matrix
1200a50f8bf6SHong Zhang -  cols - the columns indicated
1201a50f8bf6SHong Zhang 
1202a50f8bf6SHong Zhang    Output Parameters:
1203a50f8bf6SHong Zhang +  dnz - the array that will be passed to the matrix preallocation routines
1204a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1205bd481603SBarry Smith 
12062ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1207bd481603SBarry Smith 
1208bd481603SBarry Smith    Notes:
12092ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12102ef1f0ffSBarry Smith    the use of this routine
1211bd481603SBarry Smith 
12122ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1213bd481603SBarry Smith 
1214d0609cedSBarry Smith    This is a MACRO not a function because it uses variables declared in MatPreallocateBegin().
12151620fd73SBarry Smith 
12161cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1217db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1218bd481603SBarry Smith M*/
12199371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \
12209371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \
122164075487SBarry Smith     if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \
1222a6042fd4SStefano Zampini     else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12239371c9d4SSatish Balay   })
12247c922b88SBarry Smith 
1225bd481603SBarry Smith /*MC
1226d6e23781SBarry Smith    MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1227bd481603SBarry Smith        inserted using a local number of the rows and columns
1228bd481603SBarry Smith 
1229bd481603SBarry Smith    Synopsis:
1230aaa7dc30SBarry Smith    #include <petscmat.h>
1231d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1232bd481603SBarry Smith 
1233bd481603SBarry Smith    Not Collective
1234bd481603SBarry Smith 
1235bd481603SBarry Smith    Input Parameters:
1236bd481603SBarry Smith +  nrows - the number of rows indicated
12371d73ed98SBarry Smith .  rows - the indices of the rows
1238bd481603SBarry Smith .  ncols - the number of columns in the matrix
1239bd481603SBarry Smith .  cols - the columns indicated
1240bd481603SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1241a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1242bd481603SBarry Smith 
12432ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1244bd481603SBarry Smith 
1245bd481603SBarry Smith    Notes:
12462ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12472ef1f0ffSBarry Smith    the use of this routine
1248bd481603SBarry Smith 
12492ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1250bd481603SBarry Smith 
1251d0609cedSBarry Smith    This is a MACRO not a function because it uses variables declared in MatPreallocateBegin().
12521620fd73SBarry Smith 
12531cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`,
1254db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1255bd481603SBarry Smith M*/
125694bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \
12579371c9d4SSatish Balay   PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \
1258d3d32019SBarry Smith     if (cols[__i] >= __end) onz[row - __rstart]++; \
1259a6042fd4SStefano Zampini     else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12609371c9d4SSatish Balay   })
1261d3d32019SBarry Smith 
1262bd481603SBarry Smith /*MC
1263a6042fd4SStefano Zampini    MatPreallocateLocation -  An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists
126416371a99SBarry Smith 
126516371a99SBarry Smith    Synopsis:
1266aaa7dc30SBarry Smith    #include <petscmat.h>
126716371a99SBarry Smith    PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz)
126816371a99SBarry Smith 
126916371a99SBarry Smith    Not Collective
127016371a99SBarry Smith 
127116371a99SBarry Smith    Input Parameters:
1272a2b725a8SWilliam Gropp +  A - matrix
127316371a99SBarry Smith .  row - row where values exist (must be local to this process)
127416371a99SBarry Smith .  ncols - number of columns
127516371a99SBarry Smith .  cols - columns with nonzeros
127616371a99SBarry Smith .  dnz - the array that will be passed to the matrix preallocation routines
1277a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
127816371a99SBarry Smith 
12792ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
128016371a99SBarry Smith 
128116371a99SBarry Smith    Notes:
12822ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12832ef1f0ffSBarry Smith    the use of this routine
128416371a99SBarry Smith 
12852ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
128616371a99SBarry Smith 
128716371a99SBarry Smith   This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines.
128816371a99SBarry Smith 
12891cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1290db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
129116371a99SBarry Smith M*/
1292d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz))
129316371a99SBarry Smith 
129416371a99SBarry Smith /*MC
1295d0609cedSBarry Smith    MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per
1296bd481603SBarry Smith        row in a matrix providing the data that one can use to correctly preallocate the matrix.
1297bd481603SBarry Smith 
1298bd481603SBarry Smith    Synopsis:
1299aaa7dc30SBarry Smith    #include <petscmat.h>
1300d0609cedSBarry Smith    PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz)
1301bd481603SBarry Smith 
1302d083f849SBarry Smith    Collective
1303bd481603SBarry Smith 
1304bd481603SBarry Smith    Input Parameters:
130516371a99SBarry Smith +  dnz - the array that was be passed to the matrix preallocation routines
1306a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1307bd481603SBarry Smith 
13082ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1309bd481603SBarry Smith 
1310bd481603SBarry Smith    Notes:
13112ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
13122ef1f0ffSBarry Smith    the use of this routine
1313d0609cedSBarry Smith 
13142ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1315bd481603SBarry Smith 
13162ef1f0ffSBarry Smith    Developer Note:
1317d0609cedSBarry Smith     This is a MACRO not a function because it closes the { started in MatPreallocateBegin().
13181620fd73SBarry Smith 
13191cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1320db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1321bd481603SBarry Smith M*/
13229371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \
13239371c9d4SSatish Balay   PetscCall(PetscFree2(dnz, onz)); \
13249371c9d4SSatish Balay   } \
13259371c9d4SSatish Balay   while (0)
1326d0609cedSBarry Smith 
1327*edd03b47SJacob Faibussowitsch #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateEnd()", ) MatPreallocateEnd(__VA_ARGS__)
13287c922b88SBarry Smith 
13297b80b807SBarry Smith /* Routines unique to particular data structures */
1330014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *);
1331698d4c6aSKris Buschelman 
1332014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *);
1333014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *);
1334698d4c6aSKris Buschelman 
1335014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]);
1336014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]);
1337014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1338014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1339014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1340014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool);
13417b80b807SBarry Smith 
1342a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4
1343a96a251dSBarry Smith 
1344014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1345014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1346014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]);
134719b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt);
1348273d9f13SBarry Smith 
1349014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1350014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1351014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1352014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1353014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1354014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1355014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1356014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]);
1357b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *);
1358252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *);
1359014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]);
1360014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]);
13619230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
13629230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
1363014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *);
1364273d9f13SBarry Smith 
136549a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *);
1366ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt);
1367*edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatDenseSetLDA()", ) static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda)
1368d71ae5a4SJacob Faibussowitsch {
13699371c9d4SSatish Balay   return MatDenseSetLDA(A, lda);
13709371c9d4SSatish Balay }
1371014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *);
13721b807ce4Svictorle 
1373621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1374621e819fSSatish Balay 
1375014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat);
1376014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat);
13772e8a6d31SBarry Smith 
1378014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *);
13797cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *);
13807b80b807SBarry Smith /*
13817b80b807SBarry Smith   These routines are not usually accessed directly, rather solving is
138294b7f48cSBarry Smith   done through the KSP and PC interfaces.
13837b80b807SBarry Smith */
13847b80b807SBarry Smith 
138576bdecfbSBarry Smith /*J
13862ef1f0ffSBarry Smith     MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used
13872ef1f0ffSBarry Smith     to reduce fill in sparse factorizations.
1388d9274352SBarry Smith 
1389d9274352SBarry Smith    Level: beginner
1390d9274352SBarry Smith 
13912c7c0729SBarry Smith    Notes:
139216a05f60SBarry Smith    If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one
139316a05f60SBarry Smith    of its own.
13942c7c0729SBarry Smith 
13952ef1f0ffSBarry Smith    There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()`
13962ef1f0ffSBarry Smith 
13972ef1f0ffSBarry Smith    Developer Note:
13982ef1f0ffSBarry Smith    This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning`
13992ef1f0ffSBarry Smith 
14001cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`,
14012ef1f0ffSBarry Smith           `PCFactorSetOrderingType()`
140276bdecfbSBarry Smith J*/
140319fd82e9SBarry Smith typedef const char *MatOrderingType;
14042692d6eeSBarry Smith #define MATORDERINGNATURAL       "natural"
14052692d6eeSBarry Smith #define MATORDERINGND            "nd"
14062692d6eeSBarry Smith #define MATORDERING1WD           "1wd"
14072692d6eeSBarry Smith #define MATORDERINGRCM           "rcm"
14082692d6eeSBarry Smith #define MATORDERINGQMD           "qmd"
14092692d6eeSBarry Smith #define MATORDERINGROWLENGTH     "rowlength"
1410510184a7SJed Brown #define MATORDERINGWBM           "wbm"
1411fc1bef75SJed Brown #define MATORDERINGSPECTRAL      "spectral"
1412312e372aSBarry Smith #define MATORDERINGAMD           "amd"           /* only works if UMFPACK is installed with PETSc */
1413048412efSPablo Brubeck #define MATORDERINGMETISND       "metisnd"       /* only works if METIS is installed with PETSc */
14149bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */
14152c7c0729SBarry Smith #define MATORDERINGEXTERNAL      "external"      /* uses an ordering type internal to the factorization package */
1416b12f92e5SBarry Smith 
141719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrdering(Mat, MatOrderingType, IS *, IS *);
1418140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrderingList(PetscFunctionList *);
1419bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode    MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *));
1420140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList;
1421d4fbbf0eSBarry Smith 
1422013e2dc7SBarry Smith #include "petscmatcoarsen.h"
1423013e2dc7SBarry Smith 
1424014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS);
1425fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *);
1426a2ce50c7SBarry Smith 
14274ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *);
14284ac6704cSBarry Smith 
1429d91e6319SBarry Smith /*S
14302ef1f0ffSBarry Smith     MatFactorShiftType - Type of numeric shift used for factorizations
1431d90ac83dSHong Zhang 
14322ef1f0ffSBarry Smith    Values:
14332ef1f0ffSBarry Smith +  `MAT_SHIFT_NONE` - do not shift the matrix diagonal entries
14342ef1f0ffSBarry Smith .  `MAT_SHIFT_NONZERO` - shift the entries to be non-zero
14352ef1f0ffSBarry Smith .  `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite
14362ef1f0ffSBarry Smith -  `MAT_SHIFT_INBLOCKS` - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ`
1437d90ac83dSHong Zhang 
14382ef1f0ffSBarry Smith    Level: intermediate
14392ef1f0ffSBarry Smith 
14401cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()`
1441d90ac83dSHong Zhang S*/
14429371c9d4SSatish Balay typedef enum {
14439371c9d4SSatish Balay   MAT_SHIFT_NONE,
14449371c9d4SSatish Balay   MAT_SHIFT_NONZERO,
14459371c9d4SSatish Balay   MAT_SHIFT_POSITIVE_DEFINITE,
14469371c9d4SSatish Balay   MAT_SHIFT_INBLOCKS
14479371c9d4SSatish Balay } MatFactorShiftType;
14486a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[];
14495e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[];
1450d90ac83dSHong Zhang 
1451d90ac83dSHong Zhang /*S
1452ec5066bdSBarry Smith     MatFactorError - indicates what type of error was generated in a matrix factorization
14539aa7eafdSHong Zhang 
14542ef1f0ffSBarry Smith     Values:
14552ef1f0ffSBarry Smith +   `MAT_FACTOR_NOERROR` - there was no error during the factorization
14562ef1f0ffSBarry Smith .   `MAT_FACTOR_STRUCT_ZEROPIVOT` - there was a missing entry in a diagonal location of the matrix
14572ef1f0ffSBarry Smith .   `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization
14582ef1f0ffSBarry Smith .   `MAT_FACTOR_OUTMEMORY` - the factorization has run out of memory
14592ef1f0ffSBarry Smith -   `MAT_FACTOR_OTHER` - some other error has occurred.
14609aa7eafdSHong Zhang 
14612ef1f0ffSBarry Smith     Level: intermediate
146200e125f8SBarry Smith 
14632ef1f0ffSBarry Smith     Note:
14642ef1f0ffSBarry Smith     When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason`
14652ef1f0ffSBarry Smith 
14661cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`,
14672ef1f0ffSBarry Smith           `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason`
14689aa7eafdSHong Zhang S*/
14699371c9d4SSatish Balay typedef enum {
14709371c9d4SSatish Balay   MAT_FACTOR_NOERROR,
14719371c9d4SSatish Balay   MAT_FACTOR_STRUCT_ZEROPIVOT,
14729371c9d4SSatish Balay   MAT_FACTOR_NUMERIC_ZEROPIVOT,
14739371c9d4SSatish Balay   MAT_FACTOR_OUTMEMORY,
14749371c9d4SSatish Balay   MAT_FACTOR_OTHER
14759371c9d4SSatish Balay } MatFactorError;
14769aa7eafdSHong Zhang 
147700e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *);
1478b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat);
14797b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *);
148000e125f8SBarry Smith 
14819aa7eafdSHong Zhang /*S
1482422a814eSBarry Smith    MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization
1483b00f7748SHong Zhang 
1484b00f7748SHong Zhang    Level: developer
1485b00f7748SHong Zhang 
14862ef1f0ffSBarry Smith    Note:
14872ef1f0ffSBarry Smith    You can use `MatFactorInfoInitialize()` to set default values.
1488b00f7748SHong Zhang 
14892ef1f0ffSBarry Smith    Fortran Note:
14902ef1f0ffSBarry Smith    The data is available in a double precision arrays of size `MAT_FACTORINFO_SIZE`
14912ef1f0ffSBarry Smith 
14921cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`,
14932ef1f0ffSBarry Smith           `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()`
1494b00f7748SHong Zhang S*/
1495b00f7748SHong Zhang typedef struct {
149615e8a5b3SHong Zhang   PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */
149785317021SBarry Smith   PetscReal usedt;
149815e8a5b3SHong Zhang   PetscReal dt;            /* drop tolerance */
1499b00f7748SHong Zhang   PetscReal dtcol;         /* tolerance for pivoting */
150015e8a5b3SHong Zhang   PetscReal dtcount;       /* maximum nonzeros to be allowed per row */
150167e28bfeSBarry Smith   PetscReal fill;          /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */
1502348344bbSBarry Smith   PetscReal levels;        /* ICC/ILU(levels) */
1503bcd9e38bSBarry Smith   PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0
1504bcd9e38bSBarry Smith                                    factorization may be faster if do not pivot */
150515e8a5b3SHong Zhang   PetscReal zeropivot;     /* pivot is called zero if less than this */
1506f4db908eSBarry Smith   PetscReal shifttype;     /* type of shift added to matrix factor to prevent zero pivots */
1507f4db908eSBarry Smith   PetscReal shiftamount;   /* how large the shift is */
150815e8a5b3SHong Zhang } MatFactorInfo;
1509ffa6d0a5SLois Curfman McInnes 
1510014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *);
15119a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *);
15129a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15139a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *);
15149a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *);
15159a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *);
15169a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15179a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15189a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15199a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *);
15209a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *);
15213f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *);
15223f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15233f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *);
1524014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *);
1525014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec);
1526014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec);
1527014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec);
1528014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec);
1529014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec);
1530014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec);
1531014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs);
15327c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat);
15337c2f51b8SStefano Zampini 
15349371c9d4SSatish Balay typedef enum {
15359371c9d4SSatish Balay   MAT_FACTOR_SCHUR_UNFACTORED,
15369371c9d4SSatish Balay   MAT_FACTOR_SCHUR_FACTORED,
15379371c9d4SSatish Balay   MAT_FACTOR_SCHUR_INVERTED
15389371c9d4SSatish Balay } MatFactorSchurStatus;
15398e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS);
15407c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15417c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus);
15425a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat);
15437c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15445a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec);
15455a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec);
15466dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat);
1547bb5a7306SBarry Smith 
15488a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat);
1549d91e6319SBarry Smith /*E
1550d91e6319SBarry Smith     MatSORType - What type of (S)SOR to perform
1551bb1eb677SSatish Balay 
15522ef1f0ffSBarry Smith    Values:
15532ef1f0ffSBarry Smith +  `SOR_FORWARD_SWEEP` - do a sweep from the first row of the matrix to the last
15542ef1f0ffSBarry Smith .  `SOR_BACKWARD_SWEEP` -  do a sweep from the last row to the first
15552ef1f0ffSBarry Smith .  `SOR_SYMMETRIC_SWEEP` - do a sweep from the first row to the last and then back to the first
15562ef1f0ffSBarry Smith .  `SOR_LOCAL_FORWARD_SWEEP` - each MPI rank does its own forward sweep with no communication
15572ef1f0ffSBarry Smith .  `SOR_LOCAL_BACKWARD_SWEEP` - each MPI rank does its own backward sweep with no communication
15582ef1f0ffSBarry Smith .  `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI rank does its own symmetric sweep with no communication
15592ef1f0ffSBarry Smith .  `SOR_ZERO_INITIAL_GUESS` - indicates the initial solution is zero so the sweep can avoid unneeded computation
15602ef1f0ffSBarry Smith .  `SOR_EISENSTAT` - apply the Eisentat application of SOR, see `PCEISENSTAT`
15612ef1f0ffSBarry Smith .  `SOR_APPLY_UPPER` - multiply by the upper triangular portion of the matrix
15622ef1f0ffSBarry Smith -  `SOR_APPLY_LOWER` - multiply by the lower triangular portion of the matrix
15632ef1f0ffSBarry Smith 
1564d91e6319SBarry Smith     Level: beginner
1565d91e6319SBarry Smith 
15662ef1f0ffSBarry Smith    Note:
15672ef1f0ffSBarry Smith    These may be bitwise ORd together
1568d9274352SBarry Smith 
15692ef1f0ffSBarry Smith    Developer Note:
15702ef1f0ffSBarry Smith    Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below
1571d91e6319SBarry Smith 
15721cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSOR()`
1573d91e6319SBarry Smith E*/
15749371c9d4SSatish Balay typedef enum {
15759371c9d4SSatish Balay   SOR_FORWARD_SWEEP         = 1,
15769371c9d4SSatish Balay   SOR_BACKWARD_SWEEP        = 2,
15779371c9d4SSatish Balay   SOR_SYMMETRIC_SWEEP       = 3,
15789371c9d4SSatish Balay   SOR_LOCAL_FORWARD_SWEEP   = 4,
15799371c9d4SSatish Balay   SOR_LOCAL_BACKWARD_SWEEP  = 8,
15809371c9d4SSatish Balay   SOR_LOCAL_SYMMETRIC_SWEEP = 12,
15819371c9d4SSatish Balay   SOR_ZERO_INITIAL_GUESS    = 16,
15829371c9d4SSatish Balay   SOR_EISENSTAT             = 32,
15839371c9d4SSatish Balay   SOR_APPLY_UPPER           = 64,
15849371c9d4SSatish Balay   SOR_APPLY_LOWER           = 128
15859371c9d4SSatish Balay } MatSORType;
1586014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
15878ed539a5SBarry Smith 
15887086a01eSPeter Brune /*S
15897086a01eSPeter Brune      MatColoring - Object for managing the coloring of matrices.
15907086a01eSPeter Brune 
15917086a01eSPeter Brune    Level: beginner
15927086a01eSPeter Brune 
1593ec5066bdSBarry Smith    Notes:
159487497f52SBarry Smith    Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
159587497f52SBarry Smith    matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors).
1596ec5066bdSBarry Smith 
159787497f52SBarry Smith    Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This
15982ef1f0ffSBarry Smith    same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices.
1599ec5066bdSBarry Smith 
16001cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`,
16012ef1f0ffSBarry Smith           `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`,
16022ef1f0ffSBarry Smith           `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen`
16037086a01eSPeter Brune S*/
1604d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring;
1605d4db15c4SBarry Smith 
1606d4db15c4SBarry Smith /*J
1607d4db15c4SBarry Smith     MatColoringType - String with the name of a PETSc matrix coloring
1608d9274352SBarry Smith 
1609d9274352SBarry Smith    Level: beginner
1610d9274352SBarry Smith 
16111cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring`
161276bdecfbSBarry Smith J*/
161319fd82e9SBarry Smith typedef const char *MatColoringType;
16145567d71aSPeter Brune #define MATCOLORINGJP      "jp"
1615b9acb617SPeter Brune #define MATCOLORINGPOWER   "power"
16162692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural"
16172692d6eeSBarry Smith #define MATCOLORINGSL      "sl"
16182692d6eeSBarry Smith #define MATCOLORINGLF      "lf"
16192692d6eeSBarry Smith #define MATCOLORINGID      "id"
16208121bdceSPeter Brune #define MATCOLORINGGREEDY  "greedy"
1621b12f92e5SBarry Smith 
16228ac6da0aSPeter Brune /*E
16232ef1f0ffSBarry Smith    MatColoringWeightType - Type of weight scheme used for the coloring algorithm
16248ac6da0aSPeter Brune 
16252ef1f0ffSBarry Smith     Values:
162687497f52SBarry Smith +   `MAT_COLORING_RANDOM`  - Random weights
162787497f52SBarry Smith .   `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering.
162887497f52SBarry Smith -   `MAT_COLORING_LF`      - Last-first weighting.
16298ac6da0aSPeter Brune 
16308ac6da0aSPeter Brune     Level: intermediate
16318ac6da0aSPeter Brune 
16321cc06b55SBarry Smith .seealso: [](ch_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()`
16338ac6da0aSPeter Brune E*/
16349371c9d4SSatish Balay typedef enum {
16359371c9d4SSatish Balay   MAT_COLORING_WEIGHT_RANDOM,
16369371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LEXICAL,
16379371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LF,
16389371c9d4SSatish Balay   MAT_COLORING_WEIGHT_SL
16399371c9d4SSatish Balay } MatColoringWeightType;
16408ac6da0aSPeter Brune 
1641335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *);
1642d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *);
1643335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *);
1644335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer);
1645335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType);
1646335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring);
1647335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt);
1648335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *);
1649335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt);
1650335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *);
1651335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *);
1652335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring));
1653014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *);
16548ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType);
1655c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *);
16568ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm);
1657bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring);
1658*edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatColoringTest()", ) static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring)
1659d71ae5a4SJacob Faibussowitsch {
16609371c9d4SSatish Balay   return MatColoringTest(matcoloring, iscoloring);
16619371c9d4SSatish Balay }
1662bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring);
1663639f9d9dSBarry Smith 
1664d9274352SBarry Smith /*S
166587497f52SBarry Smith      MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring
1666639f9d9dSBarry Smith 
1667d9274352SBarry Smith    Level: beginner
1668d9274352SBarry Smith 
1669ec5066bdSBarry Smith    Notes:
167087497f52SBarry Smith    This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()`
1671ec5066bdSBarry Smith 
16722ef1f0ffSBarry Smith    The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object
16732ef1f0ffSBarry Smith 
16741cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()`
1675d9274352SBarry Smith S*/
1676e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring;
1677639f9d9dSBarry Smith 
1678014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *);
1679014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *);
1680014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer);
1681014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *);
1682014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **);
1683014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal);
1684014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring);
1685d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *);
1686014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec);
1687edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]);
1688f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring);
1689f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt);
1690bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *);
1691b1683b59SHong Zhang 
1692b1683b59SHong Zhang /*S
1693b9af6bddSHong Zhang      MatTransposeColoring - Object for computing a sparse matrix product C=A*B^T via coloring
1694b1683b59SHong Zhang 
16952ef1f0ffSBarry Smith    Level: developer
1696b1683b59SHong Zhang 
16971cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()`
1698b1683b59SHong Zhang S*/
1699b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring;
1700b1683b59SHong Zhang 
1701014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *);
1702014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat);
1703014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat);
1704014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *);
1705b1683b59SHong Zhang 
1706d9274352SBarry Smith /*S
1707d9274352SBarry Smith      MatPartitioning - Object for managing the partitioning of a matrix or graph
1708d9274352SBarry Smith 
1709d9274352SBarry Smith    Level: beginner
1710d9274352SBarry Smith 
171187497f52SBarry Smith    Note:
171287497f52SBarry Smith      There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations
171387497f52SBarry Smith      via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`)
1714ec5066bdSBarry Smith 
1715ec5066bdSBarry Smith    Developers Note:
17162ef1f0ffSBarry Smith      It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed
1717ec5066bdSBarry Smith 
17181cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`,
17192ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
1720d9274352SBarry Smith S*/
172191e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning;
1722d9274352SBarry Smith 
172376bdecfbSBarry Smith /*J
17248f6c3df8SBarry Smith     MatPartitioningType - String with the name of a PETSc matrix partitioning
1725d9274352SBarry Smith 
1726d9274352SBarry Smith    Level: beginner
17270d04baf8SBarry Smith dm
17281cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`,
17292ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
173076bdecfbSBarry Smith J*/
173119fd82e9SBarry Smith typedef const char *MatPartitioningType;
17322692d6eeSBarry Smith #define MATPARTITIONINGCURRENT  "current"
1733aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE  "average"
17342692d6eeSBarry Smith #define MATPARTITIONINGSQUARE   "square"
17352692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis"
17362692d6eeSBarry Smith #define MATPARTITIONINGCHACO    "chaco"
17372692d6eeSBarry Smith #define MATPARTITIONINGPARTY    "party"
173850d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch"
173988d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch"
174071306c60Sjroman 
1741014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *);
174219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType);
1743014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt);
1744014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat);
1745252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt);
1746014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]);
1747014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]);
1748ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool);
1749ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *);
1750014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *);
1751fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *);
1752668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS);
1753f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *);
1754014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *);
1755bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning));
1756014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer);
1757fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]);
1758014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning);
175919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *);
1760ca161407SBarry Smith 
176127538973SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part);
1762014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning);
1763014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *);
17640752156aSBarry Smith 
17659371c9d4SSatish Balay typedef enum {
17669371c9d4SSatish Balay   MP_CHACO_MULTILEVEL = 1,
17679371c9d4SSatish Balay   MP_CHACO_SPECTRAL   = 2,
17689371c9d4SSatish Balay   MP_CHACO_LINEAR     = 4,
17699371c9d4SSatish Balay   MP_CHACO_RANDOM     = 5,
17709371c9d4SSatish Balay   MP_CHACO_SCATTERED  = 6
17719371c9d4SSatish Balay } MPChacoGlobalType;
17726a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[];
17739371c9d4SSatish Balay typedef enum {
17749371c9d4SSatish Balay   MP_CHACO_KERNIGHAN = 1,
17759371c9d4SSatish Balay   MP_CHACO_NONE      = 2
17769371c9d4SSatish Balay } MPChacoLocalType;
17776a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[];
17789371c9d4SSatish Balay typedef enum {
17799371c9d4SSatish Balay   MP_CHACO_LANCZOS = 0,
17809371c9d4SSatish Balay   MP_CHACO_RQI     = 1
17819371c9d4SSatish Balay } MPChacoEigenType;
17826a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[];
1783b6956c12SJose Roman 
1784014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType);
1785014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *);
1786014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType);
1787014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *);
1788014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal);
1789014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType);
1790014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *);
1791014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal);
1792014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *);
1793014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt);
1794014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *);
179571306c60Sjroman 
179671306c60Sjroman #define MP_PARTY_OPT "opt"
179771306c60Sjroman #define MP_PARTY_LIN "lin"
179871306c60Sjroman #define MP_PARTY_SCA "sca"
179971306c60Sjroman #define MP_PARTY_RAN "ran"
180071306c60Sjroman #define MP_PARTY_GBF "gbf"
180171306c60Sjroman #define MP_PARTY_GCF "gcf"
180271306c60Sjroman #define MP_PARTY_BUB "bub"
180371306c60Sjroman #define MP_PARTY_DEF "def"
1804014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *);
180571306c60Sjroman #define MP_PARTY_HELPFUL_SETS  "hs"
180671306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl"
180771306c60Sjroman #define MP_PARTY_NONE          "no"
1808014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *);
1809014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal);
1810014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool);
1811014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool);
181271306c60Sjroman 
18139371c9d4SSatish Balay typedef enum {
18149371c9d4SSatish Balay   MP_PTSCOTCH_DEFAULT,
18159371c9d4SSatish Balay   MP_PTSCOTCH_QUALITY,
18169371c9d4SSatish Balay   MP_PTSCOTCH_SPEED,
18179371c9d4SSatish Balay   MP_PTSCOTCH_BALANCE,
18189371c9d4SSatish Balay   MP_PTSCOTCH_SAFETY,
18199371c9d4SSatish Balay   MP_PTSCOTCH_SCALABILITY
18209371c9d4SSatish Balay } MPPTScotchStrategyType;
18216a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[];
1822e0f1cffaSJose Roman 
1823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal);
1824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *);
1825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType);
1826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *);
182771306c60Sjroman 
1828b43b03e9SMark F. Adams /*
18296294fa2bSFande Kong  * hierarchical partitioning
18306294fa2bSFande Kong  */
18314e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *);
18324e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *);
18334e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt);
18344e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt);
18356294fa2bSFande Kong 
1836014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *);
1837591294e4SBarry Smith 
18380752156aSBarry Smith /*
1839c786d857SStefano Zampini     If you add entries here you must also add them to src/mat/f90-mod/petscmat.h
1840c786d857SStefano Zampini     If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx
1841d4fbbf0eSBarry Smith */
18429371c9d4SSatish Balay typedef enum {
18439371c9d4SSatish Balay   MATOP_SET_VALUES               = 0,
18441c1c02c0SLois Curfman McInnes   MATOP_GET_ROW                  = 1,
18451c1c02c0SLois Curfman McInnes   MATOP_RESTORE_ROW              = 2,
18461c1c02c0SLois Curfman McInnes   MATOP_MULT                     = 3,
18471c1c02c0SLois Curfman McInnes   MATOP_MULT_ADD                 = 4,
18487c922b88SBarry Smith   MATOP_MULT_TRANSPOSE           = 5,
18497c922b88SBarry Smith   MATOP_MULT_TRANSPOSE_ADD       = 6,
18501c1c02c0SLois Curfman McInnes   MATOP_SOLVE                    = 7,
18511c1c02c0SLois Curfman McInnes   MATOP_SOLVE_ADD                = 8,
18527c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE          = 9,
18537c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE_ADD      = 10,
18541c1c02c0SLois Curfman McInnes   MATOP_LUFACTOR                 = 11,
18551c1c02c0SLois Curfman McInnes   MATOP_CHOLESKYFACTOR           = 12,
1856a714c06dSBarry Smith   MATOP_SOR                      = 13,
18571c1c02c0SLois Curfman McInnes   MATOP_TRANSPOSE                = 14,
18581c1c02c0SLois Curfman McInnes   MATOP_GETINFO                  = 15,
18591c1c02c0SLois Curfman McInnes   MATOP_EQUAL                    = 16,
18601c1c02c0SLois Curfman McInnes   MATOP_GET_DIAGONAL             = 17,
18611c1c02c0SLois Curfman McInnes   MATOP_DIAGONAL_SCALE           = 18,
18621c1c02c0SLois Curfman McInnes   MATOP_NORM                     = 19,
18631c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_BEGIN           = 20,
18641c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_END             = 21,
1865d519adbfSMatthew Knepley   MATOP_SET_OPTION               = 22,
1866d519adbfSMatthew Knepley   MATOP_ZERO_ENTRIES             = 23,
1867d519adbfSMatthew Knepley   MATOP_ZERO_ROWS                = 24,
1868d519adbfSMatthew Knepley   MATOP_LUFACTOR_SYMBOLIC        = 25,
1869d519adbfSMatthew Knepley   MATOP_LUFACTOR_NUMERIC         = 26,
1870d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27,
1871d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_NUMERIC  = 28,
1872e5f2d425SStefano Zampini   MATOP_SETUP                    = 29,
1873d519adbfSMatthew Knepley   MATOP_ILUFACTOR_SYMBOLIC       = 30,
1874d519adbfSMatthew Knepley   MATOP_ICCFACTOR_SYMBOLIC       = 31,
1875a5b7ff6bSBarry Smith   MATOP_GET_DIAGONAL_BLOCK       = 32,
1876e5f2d425SStefano Zampini   MATOP_SET_INF                  = 33,
1877d519adbfSMatthew Knepley   MATOP_DUPLICATE                = 34,
1878d519adbfSMatthew Knepley   MATOP_FORWARD_SOLVE            = 35,
1879d519adbfSMatthew Knepley   MATOP_BACKWARD_SOLVE           = 36,
1880d519adbfSMatthew Knepley   MATOP_ILUFACTOR                = 37,
1881d519adbfSMatthew Knepley   MATOP_ICCFACTOR                = 38,
1882d519adbfSMatthew Knepley   MATOP_AXPY                     = 39,
18837dae84e0SHong Zhang   MATOP_CREATE_SUBMATRICES       = 40,
1884d519adbfSMatthew Knepley   MATOP_INCREASE_OVERLAP         = 41,
1885d519adbfSMatthew Knepley   MATOP_GET_VALUES               = 42,
1886d519adbfSMatthew Knepley   MATOP_COPY                     = 43,
1887d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX              = 44,
1888d519adbfSMatthew Knepley   MATOP_SCALE                    = 45,
1889d519adbfSMatthew Knepley   MATOP_SHIFT                    = 46,
189035153367SBarry Smith   MATOP_DIAGONAL_SET             = 47,
18919d39f69dSJed Brown   MATOP_ZERO_ROWS_COLUMNS        = 48,
18929d39f69dSJed Brown   MATOP_SET_RANDOM               = 49,
1893d519adbfSMatthew Knepley   MATOP_GET_ROW_IJ               = 50,
1894d519adbfSMatthew Knepley   MATOP_RESTORE_ROW_IJ           = 51,
1895d519adbfSMatthew Knepley   MATOP_GET_COLUMN_IJ            = 52,
1896d519adbfSMatthew Knepley   MATOP_RESTORE_COLUMN_IJ        = 53,
1897d519adbfSMatthew Knepley   MATOP_FDCOLORING_CREATE        = 54,
1898d519adbfSMatthew Knepley   MATOP_COLORING_PATCH           = 55,
1899d519adbfSMatthew Knepley   MATOP_SET_UNFACTORED           = 56,
1900d519adbfSMatthew Knepley   MATOP_PERMUTE                  = 57,
1901d519adbfSMatthew Knepley   MATOP_SET_VALUES_BLOCKED       = 58,
19027dae84e0SHong Zhang   MATOP_CREATE_SUBMATRIX         = 59,
1903d519adbfSMatthew Knepley   MATOP_DESTROY                  = 60,
1904d519adbfSMatthew Knepley   MATOP_VIEW                     = 61,
1905d519adbfSMatthew Knepley   MATOP_CONVERT_FROM             = 62,
1906e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_63=63 */
19077bab7c10SHong Zhang   MATOP_MATMAT_MULT_SYMBOLIC    = 64,
19087bab7c10SHong Zhang   MATOP_MATMAT_MULT_NUMERIC     = 65,
1909d519adbfSMatthew Knepley   MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66,
1910d519adbfSMatthew Knepley   MATOP_SET_VALUES_LOCAL        = 67,
1911d519adbfSMatthew Knepley   MATOP_ZERO_ROWS_LOCAL         = 68,
1912d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX_ABS         = 69,
1913d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN_ABS         = 70,
1914d519adbfSMatthew Knepley   MATOP_CONVERT                 = 71,
1915e5f2d425SStefano Zampini   MATOP_HAS_OPERATION           = 72,
19169d39f69dSJed Brown   /* MATOP_PLACEHOLDER_73=73, */
1917d519adbfSMatthew Knepley   MATOP_SET_VALUES_ADIFOR = 74,
1918d519adbfSMatthew Knepley   MATOP_FD_COLORING_APPLY = 75,
1919d519adbfSMatthew Knepley   MATOP_SET_FROM_OPTIONS  = 76,
1920e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_77=77, */
1921e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_78=78, */
19229d39f69dSJed Brown   MATOP_FIND_ZERO_DIAGONALS       = 79,
1923d519adbfSMatthew Knepley   MATOP_MULT_MULTIPLE             = 80,
1924d519adbfSMatthew Knepley   MATOP_SOLVE_MULTIPLE            = 81,
1925d519adbfSMatthew Knepley   MATOP_GET_INERTIA               = 82,
1926d519adbfSMatthew Knepley   MATOP_LOAD                      = 83,
1927d519adbfSMatthew Knepley   MATOP_IS_SYMMETRIC              = 84,
1928d519adbfSMatthew Knepley   MATOP_IS_HERMITIAN              = 85,
1929d519adbfSMatthew Knepley   MATOP_IS_STRUCTURALLY_SYMMETRIC = 86,
1930820469bcSHong Zhang   MATOP_SET_VALUES_BLOCKEDLOCAL   = 87,
1931b41ce5d5SBarry Smith   MATOP_CREATE_VECS               = 88,
1932e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_89=89, */
1933d519adbfSMatthew Knepley   MATOP_MAT_MULT_SYMBOLIC = 90,
1934d519adbfSMatthew Knepley   MATOP_MAT_MULT_NUMERIC  = 91,
1935e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_92=92, */
1936d519adbfSMatthew Knepley   MATOP_PTAP_SYMBOLIC = 93,
1937d519adbfSMatthew Knepley   MATOP_PTAP_NUMERIC  = 94,
1938e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_95=95, */
1939bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96,
1940bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_NUMER = 97,
1941e5f2d425SStefano Zampini   MATOP_BIND_TO_CPU              = 98,
19427a3c3d58SStefano Zampini   MATOP_PRODUCTSETFROMOPTIONS    = 99,
19437a3c3d58SStefano Zampini   MATOP_PRODUCTSYMBOLIC          = 100,
19447a3c3d58SStefano Zampini   MATOP_PRODUCTNUMERIC           = 101,
1945d519adbfSMatthew Knepley   MATOP_CONJUGATE                = 102,
1946e5f2d425SStefano Zampini   MATOP_VIEW_NATIVE              = 103,
1947d519adbfSMatthew Knepley   MATOP_SET_VALUES_ROW           = 104,
1948d519adbfSMatthew Knepley   MATOP_REAL_PART                = 105,
1949bda6c4cbSBarry Smith   MATOP_IMAGINARY_PART           = 106,
1950bda6c4cbSBarry Smith   MATOP_GET_ROW_UPPER_TRIANGULAR = 107,
1951bda6c4cbSBarry Smith   MATOP_RESTORE_ROW_UPPER_TRIANG = 108,
1952bda6c4cbSBarry Smith   MATOP_MAT_SOLVE                = 109,
195329eadf9eSStefano Zampini   MATOP_MAT_SOLVE_TRANSPOSE      = 110,
1954d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN              = 111,
19550e8d04f7SBarry Smith   MATOP_GET_COLUMN_VECTOR        = 112,
1956d519adbfSMatthew Knepley   MATOP_MISSING_DIAGONAL         = 113,
19570e8d04f7SBarry Smith   MATOP_GET_SEQ_NONZERO_STRUCTUR = 114,
195889c6957cSBarry Smith   MATOP_CREATE                   = 115,
195989c6957cSBarry Smith   MATOP_GET_GHOSTS               = 116,
19600e8d04f7SBarry Smith   MATOP_GET_LOCAL_SUB_MATRIX     = 117,
19610e8d04f7SBarry Smith   MATOP_RESTORE_LOCALSUB_MATRIX  = 118,
1962eeffb40dSHong Zhang   MATOP_MULT_DIAGONAL_BLOCK      = 119,
19630e8d04f7SBarry Smith   MATOP_HERMITIAN_TRANSPOSE      = 120,
19640e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANSPOSE = 121,
19650e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANS_ADD = 122,
19660e8d04f7SBarry Smith   MATOP_GET_MULTI_PROC_BLOCK     = 123,
19679d39f69dSJed Brown   MATOP_FIND_NONZERO_ROWS        = 124,
19680e8d04f7SBarry Smith   MATOP_GET_COLUMN_NORMS         = 125,
19699d39f69dSJed Brown   MATOP_INVERT_BLOCK_DIAGONAL    = 126,
1970e5f2d425SStefano Zampini   MATOP_INVERT_VBLOCK_DIAGONAL   = 127,
1971b41ce5d5SBarry Smith   MATOP_CREATE_SUB_MATRICES_MPI  = 128,
19722b8ad9a3SHong Zhang   MATOP_SET_VALUES_BATCH         = 129,
1973e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_130=130, */
19740e8d04f7SBarry Smith   MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131,
1975e9b602ebSSatish Balay   MATOP_TRANSPOSE_MAT_MULT_NUMER = 132,
19760e8d04f7SBarry Smith   MATOP_TRANSPOSE_COLORING_CREAT = 133,
19770e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_SPT = 134,
19780e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_DEN = 135,
1979e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_136=136, */
19800e8d04f7SBarry Smith   MATOP_RART_SYMBOLIC         = 137,
19810e8d04f7SBarry Smith   MATOP_RART_NUMERIC          = 138,
1982e09a3074SHong Zhang   MATOP_SET_BLOCK_SIZES       = 139,
1983f9426fe0SMark Adams   MATOP_AYPX                  = 140,
19841919a2e2SJed Brown   MATOP_RESIDUAL              = 141,
19859c8f2541SHong Zhang   MATOP_FDCOLORING_SETUP      = 142,
1986e5f2d425SStefano Zampini   MATOP_FIND_OFFBLOCK_ENTRIES = 143,
19872d033e1fSHong Zhang   MATOP_MPICONCATENATESEQ     = 144,
1988bb01b7b0SPatrick Sanan   MATOP_DESTROYSUBMATRICES    = 145,
1989e265f6d6SPatrick Sanan   MATOP_TRANSPOSE_SOLVE       = 146,
1990e265f6d6SPatrick Sanan   MATOP_GET_VALUES_LOCAL      = 147
1991fae171e0SBarry Smith } MatOperation;
19920c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void));
1993976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void));
1994976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *);
199594342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *);
1996*edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatProductClear()", ) static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A)
1997d71ae5a4SJacob Faibussowitsch {
19989371c9d4SSatish Balay   return MatProductClear(A);
19999371c9d4SSatish Balay }
2000014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void));
2001014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void));
2002014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *);
2003800f99ffSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *));
2004db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType);
2005f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
2006f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
20070c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat);
2008b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType);
2009b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *);
2010112a2221SBarry Smith 
201190ace30eSBarry Smith /*
201290ace30eSBarry Smith    Codes for matrices stored on disk. By default they are
201390ace30eSBarry Smith    stored in a universal format. By changing the format with
20146a9046bcSBarry Smith    PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will
201590ace30eSBarry Smith    be stored in a way natural for the matrix, for example dense matrices
201690ace30eSBarry Smith    would be stored as dense. Matrices stored this way may only be
2017f4403165SShri Abhyankar    read into matrices of the same type.
201890ace30eSBarry Smith */
201990ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1
202090ace30eSBarry Smith 
2021014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal);
202275d48cdbSStefano Zampini 
20238546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType);
202475d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
202575d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool);
2026f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool);
2027014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *);
20283b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *);
2029014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat);
2030e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
2031*edd03b47SJacob Faibussowitsch PETSC_EXTERN PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatConvert()", ) PetscErrorCode MatISGetMPIXAIJ(Mat, MatReuse, Mat *);
20321f4e1ec7SBarry Smith 
2033d9274352SBarry Smith /*S
2034d9274352SBarry Smith      MatNullSpace - Object that removes a null space from a vector, i.e.
2035cb6b9846SMatthew Knepley          orthogonalizes the vector to a subspace
2036d9274352SBarry Smith 
2037f7a9e4ceSBarry Smith    Level: advanced
2038d9274352SBarry Smith 
20391cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()`
2040d9274352SBarry Smith S*/
204174637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace;
2042d9274352SBarry Smith 
2043014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *);
2044014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *);
2045014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *);
2046d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec);
2047014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *);
20485fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *);
20495fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace);
2050014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace);
2051014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace);
2052014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *);
2053014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *);
2054014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer);
2055014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **);
2056014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *);
205774637425SBarry Smith 
2058014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS);
2059014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal);
2060014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *);
20613f1d51d7SBarry Smith 
2062014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *);
2063014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *);
2064014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *);
2065c4f061fbSSatish Balay 
20660bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *);
20670bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *);
20680bacdadaSStefano Zampini 
2069*edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperator()", ) static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B)
2070d71ae5a4SJacob Faibussowitsch {
2071f22e26b7SPierre Jolivet   return MatComputeOperator(A, PETSC_NULLPTR, B);
20729371c9d4SSatish Balay }
2073*edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperatorTranspose()", ) static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B)
2074d71ae5a4SJacob Faibussowitsch {
2075f22e26b7SPierre Jolivet   return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B);
20769371c9d4SSatish Balay }
2077b0a32e0cSBarry Smith 
207849bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *);
207949bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *);
2080a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **);
2081a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2082a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **);
2083a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **);
2084a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **);
2085a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2086a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **);
2087a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **);
2088dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat);
2089dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]);
2090dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]);
2091910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *);
209249bd79ccSDebojyoti Ghosh 
2093014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec);
209404f1ad80SBarry Smith 
2095014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2096014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec);
2097014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *);
2098014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *));
2099014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec));
2100014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt);
2101014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat);
2102014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal);
2103014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt);
2104014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *);
2105014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]);
2106014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *);
2107014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *);
2108e884886fSBarry Smith 
21096370053bSBarry Smith /*S
21106370053bSBarry Smith     MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free
21116370053bSBarry Smith               Jacobian vector products
2112e884886fSBarry Smith 
21132ef1f0ffSBarry Smith     Level: developer
21142ef1f0ffSBarry Smith 
211595452b02SPatrick Sanan     Notes:
211687497f52SBarry Smith     `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure
21176370053bSBarry Smith 
21182ef1f0ffSBarry Smith      MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure
21196370053bSBarry Smith 
21202ef1f0ffSBarry Smith     This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator`
21216370053bSBarry Smith 
21221cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`,
21232ef1f0ffSBarry Smith           `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator`
21246370053bSBarry Smith S*/
2125e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD;
2126e884886fSBarry Smith 
212776bdecfbSBarry Smith /*J
21282ef1f0ffSBarry Smith     MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function
2129e884886fSBarry Smith 
213016a05f60SBarry Smith    Values:
213116a05f60SBarry Smith +   `MATMFFD_DS` - an algorithm described by Dennis and Schnabel
213216a05f60SBarry Smith -   `MATMFFD_WP` - the Walker-Pernice strategy.
213316a05f60SBarry Smith 
2134e884886fSBarry Smith    Level: beginner
2135e884886fSBarry Smith 
21361cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()`
213776bdecfbSBarry Smith J*/
213819fd82e9SBarry Smith typedef const char *MatMFFDType;
2139e884886fSBarry Smith #define MATMFFD_DS "ds"
2140e884886fSBarry Smith #define MATMFFD_WP "wp"
2141e884886fSBarry Smith 
214219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType);
2143bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD));
2144e884886fSBarry Smith 
2145014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal);
2146014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool);
2147e884886fSBarry Smith 
214861ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType);
214961ab5df0SBarry Smith 
2150014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *);
2151014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *);
21527dbadf16SMatthew Knepley 
215353022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS
215453022affSStefano Zampini PETSC_EXTERN_TYPEDEF typedef PetscScalar (*MatH2OpusKernel)(PetscInt, PetscReal[], PetscReal[], void *);
215553022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernel, void *, PetscReal, PetscInt, PetscInt, Mat *);
215653022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *);
215753022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal);
215853022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat);
215953022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal);
216053022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool);
216153022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *);
216253022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *);
216353022affSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *);
2164300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar);
2165a0d2e7d8SStefano Zampini #endif
2166a0d2e7d8SStefano Zampini 
2167c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL
216898e73e17SPierre Jolivet PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatHtoolKernel)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *);
2169c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernel, void *, Mat *);
2170c7a4214aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernel, void *);
217198e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *);
217298e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *);
217398e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool);
21742ef1f0ffSBarry Smith 
2175c7a4214aSPierre Jolivet /*E
217687497f52SBarry Smith      MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL`
2177c7a4214aSPierre Jolivet 
2178c7a4214aSPierre Jolivet     Values:
217987497f52SBarry Smith +   `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation
218087497f52SBarry Smith .   `MAT_HTOOL_COMPRESSOR_FULL_ACA` - full adaptive cross approximation
218187497f52SBarry Smith -   `MAT_HTOOL_COMPRESSOR_SVD` - singular value decomposition
2182c7a4214aSPierre Jolivet 
218316a05f60SBarry Smith    Level: intermediate
218416a05f60SBarry Smith 
21851cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType`
2186c7a4214aSPierre Jolivet E*/
21879371c9d4SSatish Balay typedef enum {
21889371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA,
21899371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_FULL_ACA,
21909371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SVD
21919371c9d4SSatish Balay } MatHtoolCompressorType;
21922ef1f0ffSBarry Smith 
219398e73e17SPierre Jolivet /*E
219487497f52SBarry Smith      MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL`
219598e73e17SPierre Jolivet 
219698e73e17SPierre Jolivet     Values:
219787497f52SBarry Smith +   `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default) - axis computed via principle component analysis, split uniformly
219887497f52SBarry Smith .   `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC` - axis computed via principle component analysis, split barycentrically
219987497f52SBarry Smith .   `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR` - axis along the largest extent of the bounding box, split uniformly
220087497f52SBarry Smith -   `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically
220198e73e17SPierre Jolivet 
220216a05f60SBarry Smith    Level: intermediate
220316a05f60SBarry Smith 
22042ef1f0ffSBarry Smith     Note:
22052ef1f0ffSBarry Smith     Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types
220698e73e17SPierre Jolivet 
22071cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType`
220898e73e17SPierre Jolivet E*/
22099371c9d4SSatish Balay typedef enum {
22109371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_REGULAR,
22119371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC,
22129371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR,
22139371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC
22149371c9d4SSatish Balay } MatHtoolClusteringType;
2215c7a4214aSPierre Jolivet #endif
2216c7a4214aSPierre Jolivet 
221797969023SHong Zhang #ifdef PETSC_HAVE_MUMPS
2218014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt);
2219bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *);
2220b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal);
2221bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *);
2222bc6112feSHong Zhang 
2223ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *);
2224ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *);
2225ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *);
2226ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *);
22275c0bae8cSAshish Patel PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **);
222889a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat);
22290e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat);
223097969023SHong Zhang #endif
223123a5497aSJed Brown 
2232b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO
2233d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt);
2234b500a6b7SJose David Bermeol #endif
2235b500a6b7SJose David Bermeol 
2236d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO
2237d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt);
2238d305a81bSVasiliy Kozyrev #endif
2239d305a81bSVasiliy Kozyrev 
2240d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU
2241014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal);
2242d954db57SHong Zhang #endif
2243d954db57SHong Zhang 
2244fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST
2245fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *);
2246fb785984SHong Zhang #endif
2247fb785984SHong Zhang 
2248575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK
2249542aee0fSPieter Ghysels /*E
22502ef1f0ffSBarry Smith     MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK``
2251542aee0fSPieter Ghysels 
22522ef1f0ffSBarry Smith     Values:
22532ef1f0ffSBarry Smith +  `MAT_STRUMPACK_NATURAL` - use the current ordering
22542ef1f0ffSBarry Smith .  `MAT_STRUMPACK_METIS` - use MeTis to compute an ordering
22552ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PARMETIS` - use ParMeTis to compute an ordering
22562ef1f0ffSBarry Smith .  `MAT_STRUMPACK_SCOTCH` - use Scotch to compute an ordering
22572ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PTSCOTCH` - use parallel Scotch to compute an ordering
22582ef1f0ffSBarry Smith -  `MAT_STRUMPACK_RCM` - use an RCM ordering
22592ef1f0ffSBarry Smith 
226016a05f60SBarry Smith     Level: intermediate
226116a05f60SBarry Smith 
22622ef1f0ffSBarry Smith     Developer Note:
22632ef1f0ffSBarry Smith     Should be called `MatSTRUMPACKReorderingType`
22642ef1f0ffSBarry Smith 
22652ef1f0ffSBarry Smith .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetHSSRelTol()`, `MatSTRUMPACKSetReordering()`
2266542aee0fSPieter Ghysels E*/
22679371c9d4SSatish Balay typedef enum {
22689371c9d4SSatish Balay   MAT_STRUMPACK_NATURAL  = 0,
226934f43fa5SPieter Ghysels   MAT_STRUMPACK_METIS    = 1,
227034f43fa5SPieter Ghysels   MAT_STRUMPACK_PARMETIS = 2,
227134f43fa5SPieter Ghysels   MAT_STRUMPACK_SCOTCH   = 3,
227234f43fa5SPieter Ghysels   MAT_STRUMPACK_PTSCOTCH = 4,
22739371c9d4SSatish Balay   MAT_STRUMPACK_RCM      = 5
22749371c9d4SSatish Balay } MatSTRUMPACKReordering;
22752ef1f0ffSBarry Smith 
227634f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering);
2277575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool);
227834f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSRelTol(Mat, PetscReal);
2279*edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSTRUMPACKSetHSSRelTol()", ) static inline PetscErrorCode MatSTRUMPACKSetHSSRelCompTol(Mat mat, PetscReal rtol)
2280d71ae5a4SJacob Faibussowitsch {
22819371c9d4SSatish Balay   return MatSTRUMPACKSetHSSRelTol(mat, rtol);
22829371c9d4SSatish Balay }
228334f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSAbsTol(Mat, PetscReal);
228434f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMinSepSize(Mat, PetscInt);
2285*edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSTRUMPACKSetHSSMinSepSize()", ) static inline PetscErrorCode MatSTRUMPACKSetHSSMinSize(Mat mat, PetscInt hssminsize)
2286d71ae5a4SJacob Faibussowitsch {
22879371c9d4SSatish Balay   return MatSTRUMPACKSetHSSMinSepSize(mat, hssminsize);
22889371c9d4SSatish Balay }
228934f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMaxRank(Mat, PetscInt);
2290a36bf211SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSLeafSize(Mat, PetscInt);
2291575704cbSPieter Ghysels #endif
2292575704cbSPieter Ghysels 
2293b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool);
22942216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *);
2295*edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 13, 0, "MatBindToCPU()", ) static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg)
2296d71ae5a4SJacob Faibussowitsch {
22979371c9d4SSatish Balay   return MatBindToCPU(A, flg);
22989371c9d4SSatish Balay }
229965a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool);
2300e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *);
2301e7e92044SBarry Smith 
2302aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA
23033f9c0db1SPaul Mullowney /*E
23042ef1f0ffSBarry Smith     MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU)
23052692e278SPaul Mullowney     matrices.
2306e057df02SPaul Mullowney 
23072ef1f0ffSBarry Smith     Values:
230887497f52SBarry Smith +   `MAT_CUSPARSE_CSR` - Compressed Sparse Row
230987497f52SBarry Smith .   `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later).
231087497f52SBarry Smith -   `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later).
2311e057df02SPaul Mullowney 
2312e057df02SPaul Mullowney     Level: intermediate
2313e057df02SPaul Mullowney 
23141cc06b55SBarry Smith .seealso: [](ch_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation`
2315e057df02SPaul Mullowney E*/
2316e057df02SPaul Mullowney 
23179371c9d4SSatish Balay typedef enum {
23189371c9d4SSatish Balay   MAT_CUSPARSE_CSR,
23199371c9d4SSatish Balay   MAT_CUSPARSE_ELL,
23209371c9d4SSatish Balay   MAT_CUSPARSE_HYB
23219371c9d4SSatish Balay } MatCUSPARSEStorageFormat;
2322e057df02SPaul Mullowney 
2323e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */
2324e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[];
2325e057df02SPaul Mullowney 
23263f9c0db1SPaul Mullowney /*E
23272ef1f0ffSBarry Smith     MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU)
23282692e278SPaul Mullowney     matrices whose operation should use a particular storage format.
2329e057df02SPaul Mullowney 
23302ef1f0ffSBarry Smith     Values:
233187497f52SBarry Smith +   `MAT_CUSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel MatMult
233287497f52SBarry Smith .   `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel MatMult
233387497f52SBarry Smith .   `MAT_CUSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) MatMult
23342ef1f0ffSBarry Smith -   `MAT_CUSPARSE_ALL` - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices
2335e057df02SPaul Mullowney 
2336e057df02SPaul Mullowney     Level: intermediate
2337e057df02SPaul Mullowney 
23381cc06b55SBarry Smith .seealso: [](ch_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat`
2339e057df02SPaul Mullowney E*/
23409371c9d4SSatish Balay typedef enum {
23419371c9d4SSatish Balay   MAT_CUSPARSE_MULT_DIAG,
23429371c9d4SSatish Balay   MAT_CUSPARSE_MULT_OFFDIAG,
23439371c9d4SSatish Balay   MAT_CUSPARSE_MULT,
23449371c9d4SSatish Balay   MAT_CUSPARSE_ALL
23459371c9d4SSatish Balay } MatCUSPARSEFormatOperation;
2346e057df02SPaul Mullowney 
234710e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
234810e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2349e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat);
2350365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool);
23515f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
23525f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
23535f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **);
23545f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **);
23555f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **);
23565f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **);
23575f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **);
23585f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **);
2359637a0070SStefano Zampini 
2360637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
2361637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
2362637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **);
2363637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **);
2364637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **);
2365637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **);
2366637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **);
2367637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **);
2368637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *);
2369d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *);
2370637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat);
23713d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *);
23722d1451d4SHong Zhang 
23732d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
23742d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
23759ae82921SPaul Mullowney #endif
23769ae82921SPaul Mullowney 
237747d993e7Ssuyashtn #ifdef PETSC_HAVE_HIP
237847d993e7Ssuyashtn /*E
23792ef1f0ffSBarry Smith     MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU)
238047d993e7Ssuyashtn     matrices.
238147d993e7Ssuyashtn 
23822ef1f0ffSBarry Smith     Values:
23832ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_CSR` - Compressed Sparse Row
23842ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_ELL` - Ellpack
23852ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format
238647d993e7Ssuyashtn 
238716a05f60SBarry Smith     Level: intermediate
238816a05f60SBarry Smith 
23891cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation`
239047d993e7Ssuyashtn E*/
239147d993e7Ssuyashtn 
239247d993e7Ssuyashtn typedef enum {
239347d993e7Ssuyashtn   MAT_HIPSPARSE_CSR,
239447d993e7Ssuyashtn   MAT_HIPSPARSE_ELL,
239547d993e7Ssuyashtn   MAT_HIPSPARSE_HYB
239647d993e7Ssuyashtn } MatHIPSPARSEStorageFormat;
239747d993e7Ssuyashtn 
239847d993e7Ssuyashtn /* these will be strings associated with enumerated type defined above */
239947d993e7Ssuyashtn PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[];
240047d993e7Ssuyashtn 
240147d993e7Ssuyashtn /*E
24022ef1f0ffSBarry Smith     MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU)
240347d993e7Ssuyashtn     matrices whose operation should use a particular storage format.
240447d993e7Ssuyashtn 
24052ef1f0ffSBarry Smith     Values:
24062ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()`
2407eb495b2aSPierre Jolivet .   `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel `MatMult()`
24082ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()`
24092ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_ALL` - sets the storage format for all HIPSPARSE (GPU) matrices
24102ef1f0ffSBarry Smith 
241116a05f60SBarry Smith     Level: intermediate
241216a05f60SBarry Smith 
24131cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat`
241447d993e7Ssuyashtn E*/
241547d993e7Ssuyashtn typedef enum {
241647d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_DIAG,
241747d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_OFFDIAG,
241847d993e7Ssuyashtn   MAT_HIPSPARSE_MULT,
241947d993e7Ssuyashtn   MAT_HIPSPARSE_ALL
242047d993e7Ssuyashtn } MatHIPSPARSEFormatOperation;
242147d993e7Ssuyashtn 
242247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
242347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
242447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat);
242547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool);
242647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
242747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
242847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **);
242947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **);
243047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **);
243147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **);
243247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **);
243347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **);
243447d993e7Ssuyashtn 
243547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
243647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
243747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **);
243847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **);
243947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **);
244047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **);
244147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **);
244247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **);
244347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *);
244447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *);
244547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat);
24463d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *);
244747d993e7Ssuyashtn #endif
244847d993e7Ssuyashtn 
2449d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL)
2450d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2451d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2452d67ff14aSKarl Rupp #endif
2453d67ff14aSKarl Rupp 
245454efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW)
2455014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec);
2456014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec);
24572a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *);
245854efbe56SHong Zhang #endif
245954efbe56SHong Zhang 
2460d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
2461d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2462d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt);
2463d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *);
2464d24d4204SJose E. Roman #endif
2465d24d4204SJose E. Roman 
2466014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *);
2467014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *);
2468014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]);
2469014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]);
2470014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***);
2471014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *);
247219fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType);
2473014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]);
2474014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat);
2475d8588912SDave May 
24764325cce7SMatthew G Knepley PETSC_EXTERN PetscErrorCode MatChop(Mat, PetscReal);
2477e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *);
24784325cce7SMatthew G Knepley 
2479b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **);
248053dd7562SDmitry Karpeev 
2481c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat);
2482c094ef40SMatthew G. Knepley 
2483539c167fSBarry Smith PETSC_INTERN PetscErrorCode MatHeaderMerge(Mat, Mat *);
2484539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *);
24851a2c6b5cSJunchao Zhang 
24867ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *);
248772833a62Smarkadams4 
24882d776b49SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, Mat *);
2489dec0b466SHong Zhang PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat);
2490ad6ad4e1SHansol  Suh 
2491d16ceb75SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *);
249223a5497aSJed Brown #endif
2493