xref: /petsc/include/petscmat.h (revision eede4a3f727160250ce1ec46327afa549cd90f45)
12eac72dbSBarry Smith /*
22eac72dbSBarry Smith      Include file for the matrix component of PETSc
32eac72dbSBarry Smith */
4a4963045SJacob Faibussowitsch #pragma once
5ac09b921SBarry Smith 
62c8e378dSBarry Smith #include <petscvec.h>
72eac72dbSBarry Smith 
8ac09b921SBarry Smith /* SUBMANSEC = Mat */
9ac09b921SBarry Smith 
10d9274352SBarry Smith /*S
118f6c3df8SBarry Smith    Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without
12af27ebaaSBarry Smith          an explicit sparse representation (such as matrix-free operators). Also used to hold representations of graphs
13af27ebaaSBarry Smith          for graph operations such as coloring, `MatColoringCreate()`
142eac72dbSBarry Smith 
15d91e6319SBarry Smith    Level: beginner
16d91e6319SBarry Smith 
172ef1f0ffSBarry Smith    Note:
181cc06b55SBarry Smith    See [](doc_matrix), [](ch_matrices) and `MatType` for available matrix types
192ef1f0ffSBarry Smith 
201cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()`
21d9274352SBarry Smith S*/
22d9274352SBarry Smith typedef struct _p_Mat *Mat;
23d9274352SBarry Smith 
2476bdecfbSBarry Smith /*J
258f6c3df8SBarry Smith    MatType - String with the name of a PETSc matrix type
26d9274352SBarry Smith 
27d9274352SBarry Smith    Level: beginner
28d9274352SBarry Smith 
292ef1f0ffSBarry Smith    Note:
302ef1f0ffSBarry Smith    [](doc_matrix) for a table of available matrix types
312ef1f0ffSBarry Smith 
321cc06b55SBarry Smith .seealso: [](doc_matrix), [](ch_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()`
3376bdecfbSBarry Smith J*/
3419fd82e9SBarry Smith typedef const char *MatType;
35273d9f13SBarry Smith #define MATSAME                      "same"
365a11e1b2SBarry Smith #define MATMAIJ                      "maij"
37273d9f13SBarry Smith #define MATSEQMAIJ                   "seqmaij"
38273d9f13SBarry Smith #define MATMPIMAIJ                   "mpimaij"
3949bd79ccSDebojyoti Ghosh #define MATKAIJ                      "kaij"
4049bd79ccSDebojyoti Ghosh #define MATSEQKAIJ                   "seqkaij"
4149bd79ccSDebojyoti Ghosh #define MATMPIKAIJ                   "mpikaij"
42273d9f13SBarry Smith #define MATIS                        "is"
435a11e1b2SBarry Smith #define MATAIJ                       "aij"
44273d9f13SBarry Smith #define MATSEQAIJ                    "seqaij"
45273d9f13SBarry Smith #define MATMPIAIJ                    "mpiaij"
465a11e1b2SBarry Smith #define MATAIJCRL                    "aijcrl"
475a11e1b2SBarry Smith #define MATSEQAIJCRL                 "seqaijcrl"
485a11e1b2SBarry Smith #define MATMPIAIJCRL                 "mpiaijcrl"
499ae82921SPaul Mullowney #define MATAIJCUSPARSE               "aijcusparse"
509ae82921SPaul Mullowney #define MATSEQAIJCUSPARSE            "seqaijcusparse"
519ae82921SPaul Mullowney #define MATMPIAIJCUSPARSE            "mpiaijcusparse"
5247d993e7Ssuyashtn #define MATAIJHIPSPARSE              "aijhipsparse"
5347d993e7Ssuyashtn #define MATSEQAIJHIPSPARSE           "seqaijhipsparse"
5447d993e7Ssuyashtn #define MATMPIAIJHIPSPARSE           "mpiaijhipsparse"
558c3ff71bSJunchao Zhang #define MATAIJKOKKOS                 "aijkokkos"
568c3ff71bSJunchao Zhang #define MATSEQAIJKOKKOS              "seqaijkokkos"
578c3ff71bSJunchao Zhang #define MATMPIAIJKOKKOS              "mpiaijkokkos"
58d67ff14aSKarl Rupp #define MATAIJVIENNACL               "aijviennacl"
59d67ff14aSKarl Rupp #define MATSEQAIJVIENNACL            "seqaijviennacl"
60d67ff14aSKarl Rupp #define MATMPIAIJVIENNACL            "mpiaijviennacl"
615a11e1b2SBarry Smith #define MATAIJPERM                   "aijperm"
625a11e1b2SBarry Smith #define MATSEQAIJPERM                "seqaijperm"
635a11e1b2SBarry Smith #define MATMPIAIJPERM                "mpiaijperm"
644dfdc2d9SRichard Tran Mills #define MATAIJSELL                   "aijsell"
654dfdc2d9SRichard Tran Mills #define MATSEQAIJSELL                "seqaijsell"
664dfdc2d9SRichard Tran Mills #define MATMPIAIJSELL                "mpiaijsell"
674a2a386eSRichard Tran Mills #define MATAIJMKL                    "aijmkl"
684a2a386eSRichard Tran Mills #define MATSEQAIJMKL                 "seqaijmkl"
694a2a386eSRichard Tran Mills #define MATMPIAIJMKL                 "mpiaijmkl"
70b5b72c8aSIrina Sokolova #define MATBAIJMKL                   "baijmkl"
71b5b72c8aSIrina Sokolova #define MATSEQBAIJMKL                "seqbaijmkl"
72b5b72c8aSIrina Sokolova #define MATMPIBAIJMKL                "mpibaijmkl"
73273d9f13SBarry Smith #define MATSHELL                     "shell"
74c1fff1c6SRichard Tran Mills #define MATCENTERING                 "centering"
755a11e1b2SBarry Smith #define MATDENSE                     "dense"
76637a0070SStefano Zampini #define MATDENSECUDA                 "densecuda"
7747d993e7Ssuyashtn #define MATDENSEHIP                  "densehip"
78209238afSKris Buschelman #define MATSEQDENSE                  "seqdense"
79bfc799aaSStefano Zampini #define MATSEQDENSECUDA              "seqdensecuda"
8047d993e7Ssuyashtn #define MATSEQDENSEHIP               "seqdensehip"
81273d9f13SBarry Smith #define MATMPIDENSE                  "mpidense"
82637a0070SStefano Zampini #define MATMPIDENSECUDA              "mpidensecuda"
8347d993e7Ssuyashtn #define MATMPIDENSEHIP               "mpidensehip"
84db31f6deSJed Brown #define MATELEMENTAL                 "elemental"
85d24d4204SJose E. Roman #define MATSCALAPACK                 "scalapack"
865a11e1b2SBarry Smith #define MATBAIJ                      "baij"
87273d9f13SBarry Smith #define MATSEQBAIJ                   "seqbaij"
88273d9f13SBarry Smith #define MATMPIBAIJ                   "mpibaij"
89273d9f13SBarry Smith #define MATMPIADJ                    "mpiadj"
905a11e1b2SBarry Smith #define MATSBAIJ                     "sbaij"
91273d9f13SBarry Smith #define MATSEQSBAIJ                  "seqsbaij"
92273d9f13SBarry Smith #define MATMPISBAIJ                  "mpisbaij"
93cebc7f6cSBarry Smith #define MATMFFD                      "mffd"
94c8a8475eSBarry Smith #define MATNORMAL                    "normal"
95c5e4d11fSDmitry Karpeev #define MATNORMALHERMITIAN           "normalh"
96ab92ecdeSBarry Smith #define MATLRC                       "lrc"
972a6744ebSBarry Smith #define MATSCATTER                   "scatter"
98421e10b8SBarry Smith #define MATBLOCKMAT                  "blockmat"
99793850ffSBarry Smith #define MATCOMPOSITE                 "composite"
1001f8c7532SHong Zhang #define MATFFT                       "fft"
1011f8c7532SHong Zhang #define MATFFTW                      "fftw"
102e133240eSMatthew G Knepley #define MATSEQCUFFT                  "seqcufft"
10347d993e7Ssuyashtn #define MATSEQHIPFFT                 "seqhipfft"
104edd03b47SJacob Faibussowitsch #define MATTRANSPOSEMAT              PETSC_DEPRECATED_MACRO(3, 18, 0, "MATTRANSPOSEVIRTUAL", ) "transpose"
105013e2dc7SBarry Smith #define MATTRANSPOSEVIRTUAL          "transpose"
106013e2dc7SBarry Smith #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose"
10772ca8751SBarry Smith #define MATSCHURCOMPLEMENT           "schurcomplement"
1081d6018f0SLisandro Dalcin #define MATPYTHON                    "python"
10963c07aadSStefano Zampini #define MATHYPRE                     "hypre"
110f91d8e95SBarry Smith #define MATHYPRESTRUCT               "hyprestruct"
111a9e6138eSGlenn Hammond #define MATHYPRESSTRUCT              "hypresstruct"
112ee1cef2cSJed Brown #define MATSUBMATRIX                 "submatrix"
1132c0dbf93SJed Brown #define MATLOCALREF                  "localref"
114d8588912SDave May #define MATNEST                      "nest"
115c094ef40SMatthew G. Knepley #define MATPREALLOCATOR              "preallocator"
116d4002b98SHong Zhang #define MATSELL                      "sell"
117d4002b98SHong Zhang #define MATSEQSELL                   "seqsell"
118d4002b98SHong Zhang #define MATMPISELL                   "mpisell"
1192d1451d4SHong Zhang #define MATSELLCUDA                  "sellcuda"
1202d1451d4SHong Zhang #define MATSEQSELLCUDA               "seqsellcuda"
1212d1451d4SHong Zhang #define MATMPISELLCUDA               "mpisellcuda"
122a3b2e22bSHong Zhang #define MATDUMMY                     "dummy"
123cd929ea3SAlp Dener #define MATLMVM                      "lmvm"
12478e4361aSAlp Dener #define MATLMVMDFP                   "lmvmdfp"
12578e4361aSAlp Dener #define MATLMVMBFGS                  "lmvmbfgs"
12678e4361aSAlp Dener #define MATLMVMSR1                   "lmvmsr1"
127864588a7SAlp Dener #define MATLMVMBROYDEN               "lmvmbroyden"
128864588a7SAlp Dener #define MATLMVMBADBROYDEN            "lmvmbadbroyden"
129864588a7SAlp Dener #define MATLMVMSYMBROYDEN            "lmvmsymbroyden"
130864588a7SAlp Dener #define MATLMVMSYMBADBROYDEN         "lmvmsymbadbroyden"
131864588a7SAlp Dener #define MATLMVMDIAGBROYDEN           "lmvmdiagbroyden"
1323423f386SBarry Smith #define MATCONSTANTDIAGONAL          "constantdiagonal"
133345a4b08SToby Isaac #define MATDIAGONAL                  "diagonal"
134c7a4214aSPierre Jolivet #define MATHTOOL                     "htool"
13553022affSStefano Zampini #define MATH2OPUS                    "h2opus"
136773941d6SBarry Smith 
13776bdecfbSBarry Smith /*J
138af27ebaaSBarry Smith    MatSolverType - String with the name of a PETSc factorization-based matrix solver type.
1399989ab13SBarry Smith 
140c2b89b5dSBarry Smith    For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc
1419989ab13SBarry Smith 
1429989ab13SBarry Smith    Level: beginner
1439989ab13SBarry Smith 
1442ef1f0ffSBarry Smith    Note:
14516a05f60SBarry Smith    `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as
14616a05f60SBarry Smith    a ./configure option to install them
147c7ccbb75SBarry Smith 
1481cc06b55SBarry Smith .seealso: [](sec_matfactor), [](ch_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()`
14976bdecfbSBarry Smith J*/
150ea799195SBarry Smith typedef const char *MatSolverType;
1512692d6eeSBarry Smith #define MATSOLVERSUPERLU      "superlu"
1522692d6eeSBarry Smith #define MATSOLVERSUPERLU_DIST "superlu_dist"
15308f5efcfSPieter Ghysels #define MATSOLVERSTRUMPACK    "strumpack"
1542692d6eeSBarry Smith #define MATSOLVERUMFPACK      "umfpack"
15520db9a53SJed Brown #define MATSOLVERCHOLMOD      "cholmod"
156d89f5e7aSBarry Smith #define MATSOLVERKLU          "klu"
157d89f5e7aSBarry Smith #define MATSOLVERELEMENTAL    "elemental"
158d24d4204SJose E. Roman #define MATSOLVERSCALAPACK    "scalapack"
1592692d6eeSBarry Smith #define MATSOLVERESSL         "essl"
1602692d6eeSBarry Smith #define MATSOLVERLUSOL        "lusol"
1612692d6eeSBarry Smith #define MATSOLVERMUMPS        "mumps"
162d615f992SSatish Balay #define MATSOLVERMKL_PARDISO  "mkl_pardiso"
163d305a81bSVasiliy Kozyrev #define MATSOLVERMKL_CPARDISO "mkl_cpardiso"
1642692d6eeSBarry Smith #define MATSOLVERPASTIX       "pastix"
1652692d6eeSBarry Smith #define MATSOLVERMATLAB       "matlab"
1662692d6eeSBarry Smith #define MATSOLVERPETSC        "petsc"
1672692d6eeSBarry Smith #define MATSOLVERBAS          "bas"
1689ae82921SPaul Mullowney #define MATSOLVERCUSPARSE     "cusparse"
169bfc799aaSStefano Zampini #define MATSOLVERCUDA         "cuda"
17047d993e7Ssuyashtn #define MATSOLVERHIPSPARSE    "hipsparse"
17147d993e7Ssuyashtn #define MATSOLVERHIP          "hip"
172930e68a5SMark Adams #define MATSOLVERKOKKOS       "kokkos"
173a2fc1e05SToby Isaac #define MATSOLVERSPQR         "spqr"
174c0cdd4a1SDahai Guo 
175b24902e0SBarry Smith /*E
176b24902e0SBarry Smith     MatFactorType - indicates what type of factorization is requested
177b24902e0SBarry Smith 
1782ef1f0ffSBarry Smith     Values:
1792ef1f0ffSBarry Smith +  `MAT_FACTOR_LU`       - LU factorization
1802ef1f0ffSBarry Smith .  `MAT_FACTOR_CHOLESKY` - Cholesky factorization
1812ef1f0ffSBarry Smith .  `MAT_FACTOR_ILU`      - ILU factorization
1822ef1f0ffSBarry Smith .  `MAT_FACTOR_ICC`      - incomplete Cholesky factorization
1832ef1f0ffSBarry Smith .  `MAT_FACTOR_ILUDT`    - ILU factorization with drop tolerance
1842ef1f0ffSBarry Smith -  `MAT_FACTOR_QR`       - QR factorization
185b24902e0SBarry Smith 
18616a05f60SBarry Smith     Level: beginner
18716a05f60SBarry Smith 
1881cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()`
189b24902e0SBarry Smith E*/
1909371c9d4SSatish Balay typedef enum {
1919371c9d4SSatish Balay   MAT_FACTOR_NONE,
1929371c9d4SSatish Balay   MAT_FACTOR_LU,
1939371c9d4SSatish Balay   MAT_FACTOR_CHOLESKY,
1949371c9d4SSatish Balay   MAT_FACTOR_ILU,
1959371c9d4SSatish Balay   MAT_FACTOR_ICC,
1969371c9d4SSatish Balay   MAT_FACTOR_ILUDT,
1979371c9d4SSatish Balay   MAT_FACTOR_QR,
1989371c9d4SSatish Balay   MAT_FACTOR_NUM_TYPES
1999371c9d4SSatish Balay } MatFactorType;
200014dd563SJed Brown PETSC_EXTERN const char *const MatFactorTypes[];
201e92e720dSBarry Smith 
202ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *);
203ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *);
204f73b0415SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *);
205edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 15, 0, "MatFactorGetCanUseOrdering()", ) static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b)
206d71ae5a4SJacob Faibussowitsch {
2079371c9d4SSatish Balay   return MatFactorGetCanUseOrdering(A, b);
2089371c9d4SSatish Balay }
209ea799195SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *);
210014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *);
2117abd51d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType);
2128434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode(MatSolverFn)(Mat, MatFactorType, Mat *);
2138434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatSolverFn *MatSolverFunction;
21407e0ed13SBarry Smith 
2158434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFn *);
2168434afd1SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFn **);
217edd03b47SJacob Faibussowitsch typedef MatSolverType       MatSolverPackage PETSC_DEPRECATED_TYPEDEF(3, 9, 0, "MatSolverType", );
2188434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeRegister()", ) static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFn *f)
219d71ae5a4SJacob Faibussowitsch {
2209371c9d4SSatish Balay   return MatSolverTypeRegister(stype, mtype, ftype, f);
2219371c9d4SSatish Balay }
2228434afd1SBarry Smith PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeGet()", ) static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFn **f)
223d71ae5a4SJacob Faibussowitsch {
2249371c9d4SSatish Balay   return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f);
2259371c9d4SSatish Balay }
2269989ab13SBarry Smith 
2274222ddf1SHong Zhang /*E
22895bd0b28SBarry Smith     MatProductType - indicates what type of matrix product to compute
2294222ddf1SHong Zhang 
2302ef1f0ffSBarry Smith     Values:
2312ef1f0ffSBarry Smith +  `MATPRODUCT_AB`   - product of two matrices
2322ef1f0ffSBarry Smith .  `MATPRODUCT_AtB`  - product of the transpose of a given matrix with a matrix
2332ef1f0ffSBarry Smith .  `MATPRODUCT_ABt`  - product of a matrix with the transpose of another given matrix
2342ef1f0ffSBarry Smith .  `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself
2352ef1f0ffSBarry Smith .  `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix
2362ef1f0ffSBarry Smith -  `MATPRODUCT_ABC`  - the product of three matrices
2372ef1f0ffSBarry Smith 
23816a05f60SBarry Smith     Level: beginner
23916a05f60SBarry Smith 
2401cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatProductSetType()`
2414222ddf1SHong Zhang E*/
2429371c9d4SSatish Balay typedef enum {
2439371c9d4SSatish Balay   MATPRODUCT_UNSPECIFIED = 0,
2449371c9d4SSatish Balay   MATPRODUCT_AB,
2459371c9d4SSatish Balay   MATPRODUCT_AtB,
2469371c9d4SSatish Balay   MATPRODUCT_ABt,
2479371c9d4SSatish Balay   MATPRODUCT_PtAP,
2489371c9d4SSatish Balay   MATPRODUCT_RARt,
2499371c9d4SSatish Balay   MATPRODUCT_ABC
2509371c9d4SSatish Balay } MatProductType;
251544a5e07SHong Zhang PETSC_EXTERN const char *const MatProductTypes[];
2524222ddf1SHong Zhang 
2534222ddf1SHong Zhang /*J
2544222ddf1SHong Zhang     MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation
2554222ddf1SHong Zhang 
2564222ddf1SHong Zhang    Level: beginner
2574222ddf1SHong Zhang 
2581cc06b55SBarry Smith .seealso: [](sec_matmatproduct), [](ch_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType`
2594222ddf1SHong Zhang J*/
2604222ddf1SHong Zhang typedef const char *MatProductAlgorithm;
2613e662e0bSHong Zhang #define MATPRODUCTALGORITHMDEFAULT         "default"
2623e662e0bSHong Zhang #define MATPRODUCTALGORITHMSORTED          "sorted"
2633e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLE        "scalable"
2643e662e0bSHong Zhang #define MATPRODUCTALGORITHMSCALABLEFAST    "scalable_fast"
2653e662e0bSHong Zhang #define MATPRODUCTALGORITHMHEAP            "heap"
2663e662e0bSHong Zhang #define MATPRODUCTALGORITHMBHEAP           "btheap"
2673e662e0bSHong Zhang #define MATPRODUCTALGORITHMLLCONDENSED     "llcondensed"
2683e662e0bSHong Zhang #define MATPRODUCTALGORITHMROWMERGE        "rowmerge"
2693e662e0bSHong Zhang #define MATPRODUCTALGORITHMOUTERPRODUCT    "outerproduct"
2703e662e0bSHong Zhang #define MATPRODUCTALGORITHMATB             "at*b"
2713e662e0bSHong Zhang #define MATPRODUCTALGORITHMRAP             "rap"
2723e662e0bSHong Zhang #define MATPRODUCTALGORITHMNONSCALABLE     "nonscalable"
2733e662e0bSHong Zhang #define MATPRODUCTALGORITHMSEQMPI          "seqmpi"
2743e662e0bSHong Zhang #define MATPRODUCTALGORITHMBACKEND         "backend"
2753e662e0bSHong Zhang #define MATPRODUCTALGORITHMOVERLAPPING     "overlapping"
2763e662e0bSHong Zhang #define MATPRODUCTALGORITHMMERGED          "merged"
2773e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCE       "allatonce"
2783e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged"
2793e662e0bSHong Zhang #define MATPRODUCTALGORITHMALLGATHERV      "allgatherv"
2803e662e0bSHong Zhang #define MATPRODUCTALGORITHMCYCLIC          "cyclic"
2813e662e0bSHong Zhang #if defined(PETSC_HAVE_HYPRE)
2823e662e0bSHong Zhang   #define MATPRODUCTALGORITHMHYPRE "hypre"
2833e662e0bSHong Zhang #endif
2844222ddf1SHong Zhang 
2854222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *);
2864222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat);
2874222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType);
2884222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm);
2898fcac130SJose E. Roman PETSC_EXTERN PetscErrorCode MatProductGetAlgorithm(Mat, MatProductAlgorithm *);
2904222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal);
2914222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat);
2924222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat);
2934222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat);
2944222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat);
2954417c5e8SHong Zhang PETSC_EXTERN PetscErrorCode MatProductClear(Mat);
2966718818eSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer);
297c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *);
298c600787bSStefano Zampini PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *);
2994222ddf1SHong Zhang 
300c06d978dSMatthew Knepley /* Logging support */
3010700a824SBarry Smith #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */
302014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_CLASSID;
303335efc43SPeter Brune PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID;
304014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID;
305014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID;
306014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID;
307014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID;
308014dd563SJed Brown PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID;
309014dd563SJed Brown PETSC_EXTERN PetscClassId MATMFFD_CLASSID;
310c06d978dSMatthew Knepley 
311ceb03754SKris Buschelman /*E
3122ef1f0ffSBarry Smith    MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions
313cf37664fSBarry Smith    are to be reused to store the new matrix values.
314cf37664fSBarry Smith 
3152ef1f0ffSBarry Smith    Values:
3162ef1f0ffSBarry Smith +  `MAT_INITIAL_MATRIX` - create a new matrix
3172ef1f0ffSBarry Smith .  `MAT_REUSE_MATRIX`   - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX`
3182ef1f0ffSBarry Smith .  `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions)
3192ef1f0ffSBarry Smith -  `MAT_IGNORE_MATRIX`  - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions)
320ceb03754SKris Buschelman 
321ceb03754SKris Buschelman     Level: beginner
322ceb03754SKris Buschelman 
3231cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()`
324ceb03754SKris Buschelman E*/
3259371c9d4SSatish Balay typedef enum {
3269371c9d4SSatish Balay   MAT_INITIAL_MATRIX,
3279371c9d4SSatish Balay   MAT_REUSE_MATRIX,
3289371c9d4SSatish Balay   MAT_IGNORE_MATRIX,
3299371c9d4SSatish Balay   MAT_INPLACE_MATRIX
3309371c9d4SSatish Balay } MatReuse;
331ceb03754SKris Buschelman 
3325494a064SHong Zhang /*E
3332ef1f0ffSBarry Smith     MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()`
3342ef1f0ffSBarry Smith     include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`.
3355494a064SHong Zhang 
3362ef1f0ffSBarry Smith     Values:
3372ef1f0ffSBarry Smith +  `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values
3382ef1f0ffSBarry Smith -  `MAT_GET_VALUES`        - copy the matrix values
3392ef1f0ffSBarry Smith 
34095bd0b28SBarry Smith     Level: developer
34195bd0b28SBarry Smith 
3422ef1f0ffSBarry Smith     Developer Note:
3432ef1f0ffSBarry Smith     Why is not just a boolean used for this information?
3442ef1f0ffSBarry Smith 
3451cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()`
3465494a064SHong Zhang E*/
3479371c9d4SSatish Balay typedef enum {
3489371c9d4SSatish Balay   MAT_DO_NOT_GET_VALUES,
3499371c9d4SSatish Balay   MAT_GET_VALUES
3509371c9d4SSatish Balay } MatCreateSubMatrixOption;
3515494a064SHong Zhang 
352607a6623SBarry Smith PETSC_EXTERN PetscErrorCode MatInitializePackage(void);
3534bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatFinalizePackage(void);
354c06d978dSMatthew Knepley 
355014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *);
35677433607SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFromOptions(MPI_Comm, const char *, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
357014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt);
35819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType);
3590d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *);
3600d229a57SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType);
361014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat);
362fe2efc57SMark PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]);
363bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat));
36423bebc0bSBarry Smith PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]);
365014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]);
36626cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]);
36726cc229bSBarry Smith PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]);
368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]);
369014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]);
37084d44b13SHong Zhang PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool);
371f69a0ea3SMatthew Knepley 
372140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatList;
373140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatColoringList;
374140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatPartitioningList;
37528988994SBarry Smith 
3763b224e63SBarry Smith /*E
377aa6c7ce3SBarry Smith    MatStructure - Indicates if two matrices have the same nonzero structure
3783b224e63SBarry Smith 
3792ef1f0ffSBarry Smith    Values:
3802ef1f0ffSBarry Smith +  `SAME_NONZERO_PATTERN`      - the two matrices have identical nonzero patterns
3812ef1f0ffSBarry Smith .  `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns
3822ef1f0ffSBarry Smith .  `SUBSET_NONZERO_PATTERN`    - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix
3832ef1f0ffSBarry Smith -  `UNKNOWN_NONZERO_PATTERN`   - there is no known relationship between the nonzero patterns. In this case the implementations
3842ef1f0ffSBarry Smith                                  may try to detect a relationship to optimize the operation
385531d0c6aSBarry Smith 
38616a05f60SBarry Smith    Level: beginner
38716a05f60SBarry Smith 
388af27ebaaSBarry Smith    Note:
389af27ebaaSBarry Smith    Certain matrix operations (such as `MatAXPY()`) can run much faster if the sparsity pattern of the matrices are the same. But actually determining if
390af27ebaaSBarry Smith    the patterns are the same may be costly. This provides a way for users who know something about the sparsity patterns to provide this information
391af27ebaaSBarry Smith    to certain PETSc routines.
392af27ebaaSBarry Smith 
3931cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()`
3943b224e63SBarry Smith E*/
3959371c9d4SSatish Balay typedef enum {
3969371c9d4SSatish Balay   DIFFERENT_NONZERO_PATTERN,
3979371c9d4SSatish Balay   SUBSET_NONZERO_PATTERN,
3989371c9d4SSatish Balay   SAME_NONZERO_PATTERN,
3999371c9d4SSatish Balay   UNKNOWN_NONZERO_PATTERN
4009371c9d4SSatish Balay } MatStructure;
401d60b7d5cSBarry Smith PETSC_EXTERN const char *const MatStructures[];
4023b224e63SBarry Smith 
4039779e05dSSatish Balay #if defined                 PETSC_HAVE_MKL_SPARSE
404ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
405ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
40680095d54SIrina Sokolova PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
407ddee360bSSatish Balay PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
40880095d54SIrina Sokolova #endif
409cd929ea3SAlp Dener 
4104bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
4114bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
4124bf303faSJacob Faibussowitsch 
413d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
414d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
415d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]);
416d4002b98SHong Zhang PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
41707e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *);
41807e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *);
41907e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *);
42007e43b41SHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt);
421b921024eSHong Zhang PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *);
42280095d54SIrina Sokolova 
4234bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
4244bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
425fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
426fa078d78SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMPISELLGetSeqSELL(Mat, Mat *, Mat *, const PetscInt *[]);
4274bf303faSJacob Faibussowitsch 
428014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
429014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
430014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
431014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
432014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4338f8f2f0dSBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4346a3d2595SBarry Smith PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]);
435014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *);
4363b00a383SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *);
4373b00a383SHong Zhang 
438014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
439014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
440014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
4417e8381f9SStefano Zampini 
442e8729f6fSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]);
44382a78a4eSJed Brown PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]);
4447e8381f9SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode);
445d21a29f3SJed Brown 
446014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *);
447014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
448d21a29f3SJed Brown 
449014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
450014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
45138f409ebSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
452014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
4534cce697cSJed Brown PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]);
454dfb205c3SBarry Smith 
455014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *);
456c1fff1c6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *);
457014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *);
458c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *);
459986c4d72SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *);
460267ca84cSJose E. Roman PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *);
461bcf2175cSMatthew Knepley PETSC_EXTERN PetscErrorCode MatLRCSetMats(Mat, Mat, Mat, Vec, Mat);
462c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *);
463014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
464014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
465c0cdd4a1SDahai Guo 
466014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *);
467014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter);
468014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *);
469014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *);
470014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat);
471014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat);
4729371c9d4SSatish Balay typedef enum {
4739371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_RIGHT,
4749371c9d4SSatish Balay   MAT_COMPOSITE_MERGE_LEFT
4759371c9d4SSatish Balay } MatCompositeMergeType;
4768c8613bfSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType);
477014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *);
4780da935d5SPierre Jolivet /*E
4790da935d5SPierre Jolivet     MatCompositeType - indicates what type of `MATCOMPOSITE` is used
4800da935d5SPierre Jolivet 
4810da935d5SPierre Jolivet     Values:
4820da935d5SPierre Jolivet +  `MAT_COMPOSITE_ADDITIVE`       - sum of matrices (default)
4830da935d5SPierre Jolivet -  `MAT_COMPOSITE_MULTIPLICATIVE` - product of matrices
4840da935d5SPierre Jolivet 
4850da935d5SPierre Jolivet     Level: beginner
4860da935d5SPierre Jolivet 
4870da935d5SPierre Jolivet .seealso: [](ch_matrices), `MATCOMPOSITE`, `MatCompositeSetType()`, `MatCompositeGetType()`
4880da935d5SPierre Jolivet E*/
4899371c9d4SSatish Balay typedef enum {
4909371c9d4SSatish Balay   MAT_COMPOSITE_ADDITIVE,
4919371c9d4SSatish Balay   MAT_COMPOSITE_MULTIPLICATIVE
4929371c9d4SSatish Balay } MatCompositeType;
493014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType);
4946dbc55e5SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *);
4953b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure);
4963b35acafSJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *);
4976d0add67SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *);
4988b5c3584SJakub Kruzik PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *);
49903049c21SJunchao Zhang PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *);
5006d7c1e57SBarry Smith 
50119fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *);
502014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *);
503dedccee8SHong Zhang 
504014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *);
5058060fb66Sstefano_zampini PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *);
506d0de2241SAndrew Spott PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *);
50706511a5cSPierre Jolivet PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *);
508fa80d070SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *);
50965f45395SPierre Jolivet PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *);
51054e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *);
51154e05e6cSHong Zhang PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS);
512014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *);
5133423f386SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *);
514345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatCreateDiagonal(Vec, Mat *);
515345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetDiagonal(Mat, Vec *);
516345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreDiagonal(Mat, Vec *);
517345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalGetInverseDiagonal(Mat, Vec *);
518345a4b08SToby Isaac PETSC_EXTERN PetscErrorCode MatDiagonalRestoreInverseDiagonal(Mat, Vec *);
5191472f72bSBarry Smith 
520978814f1SStefano Zampini #if defined(PETSC_HAVE_HYPRE)
521d975228cSstefano_zampini PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
522978814f1SStefano Zampini #endif
523978814f1SStefano Zampini 
524014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]);
525ebead697SStefano Zampini PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]);
5261d6018f0SLisandro Dalcin 
527846b4da1SFande Kong PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat);
528014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetUp(Mat);
529014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroy(Mat *);
530e56f5c9eSBarry Smith PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *);
53121c89e3eSBarry Smith 
532014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatConjugate(Mat);
533014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRealPart(Mat);
534014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat);
535014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *);
536014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *);
537713ccfa9SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **);
5380da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *);
539479a70c0SJed Brown PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat);
5408a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *);
54120c04d79SPierre Jolivet PETSC_EXTERN PetscErrorCode MatComputeVariableBlockEnvelope(Mat);
54299cafbc1SBarry Smith 
543014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
5448a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode);
545014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
546014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]);
547014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]);
548014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]);
54973a71a0fSBarry Smith PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom);
55084cb2905SBarry Smith 
5512ef4de8bSBarry Smith /*S
5522ef1f0ffSBarry Smith    MatStencil - Data structure (C struct) for storing information about rows and
5532ef1f0ffSBarry Smith    columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()`
55462ef0227SBarry Smith 
5552ef1f0ffSBarry Smith    Level: beginner
5562ef1f0ffSBarry Smith 
5572ef1f0ffSBarry Smith    Notes:
55862ef0227SBarry Smith    The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored).
55987497f52SBarry Smith    The c represents the the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored.
56062ef0227SBarry Smith 
56187497f52SBarry Smith    For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`.
562be479b30SJed Brown 
5632ef1f0ffSBarry Smith    For staggered grids, see `DMStagStencil`
5642ef4de8bSBarry Smith 
5652ef1f0ffSBarry Smith    Fortran Note:
5662ef1f0ffSBarry Smith    See `MatSetValuesStencil()` for details.
5672ef4de8bSBarry Smith 
5681cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`,
5692ef1f0ffSBarry Smith           `DMStagStencil`
5702ef4de8bSBarry Smith S*/
571435da068SBarry Smith typedef struct {
572c1ac3661SBarry Smith   PetscInt k, j, i, c;
573435da068SBarry Smith } MatStencil;
5742ef4de8bSBarry Smith 
575014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
576014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
577014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt);
578435da068SBarry Smith 
579d91e6319SBarry Smith /*E
5802ef1f0ffSBarry Smith     MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use
581d91e6319SBarry Smith 
5822ef1f0ffSBarry Smith     Values:
5832ef1f0ffSBarry Smith +   `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix
5842ef1f0ffSBarry Smith -   `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted
5852ef1f0ffSBarry Smith 
58616a05f60SBarry Smith     Level: beginner
58716a05f60SBarry Smith 
5881cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()`
589d91e6319SBarry Smith E*/
5909371c9d4SSatish Balay typedef enum {
5919371c9d4SSatish Balay   MAT_FLUSH_ASSEMBLY = 1,
5929371c9d4SSatish Balay   MAT_FINAL_ASSEMBLY = 0
5939371c9d4SSatish Balay } MatAssemblyType;
594014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType);
595014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType);
596014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *);
5974f9c727eSBarry Smith 
598d91e6319SBarry Smith /*E
5992ef1f0ffSBarry Smith    MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage
600d91e6319SBarry Smith 
601d91e6319SBarry Smith    Level: beginner
602d91e6319SBarry Smith 
6032ef1f0ffSBarry Smith    Note:
6042ef1f0ffSBarry Smith    See `MatSetOption()` for the use of the options
6052ef1f0ffSBarry Smith 
6062ef1f0ffSBarry Smith    Developer Note:
60795452b02SPatrick Sanan    Entries that are negative need not be called collectively by all processes.
608382164b0SBarry Smith 
6091cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatSetOption()`
610d91e6319SBarry Smith E*/
6119371c9d4SSatish Balay typedef enum {
6129371c9d4SSatish Balay   MAT_OPTION_MIN                  = -3,
613c5e4d11fSDmitry Karpeev   MAT_UNUSED_NONZERO_LOCATION_ERR = -2,
61492d4d306SBarry Smith   MAT_ROW_ORIENTED                = -1,
615382164b0SBarry Smith   MAT_SYMMETRIC                   = 1,
616382164b0SBarry Smith   MAT_STRUCTURALLY_SYMMETRIC      = 2,
6178c78258cSHong Zhang   MAT_FORCE_DIAGONAL_ENTRIES      = 3,
618382164b0SBarry Smith   MAT_IGNORE_OFF_PROC_ENTRIES     = 4,
619382164b0SBarry Smith   MAT_USE_HASH_TABLE              = 5,
620382164b0SBarry Smith   MAT_KEEP_NONZERO_PATTERN        = 6,
621382164b0SBarry Smith   MAT_IGNORE_ZERO_ENTRIES         = 7,
622382164b0SBarry Smith   MAT_USE_INODES                  = 8,
623382164b0SBarry Smith   MAT_HERMITIAN                   = 9,
624382164b0SBarry Smith   MAT_SYMMETRY_ETERNAL            = 10,
625c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_LOCATION_ERR    = 11,
626382164b0SBarry Smith   MAT_IGNORE_LOWER_TRIANGULAR     = 12,
627382164b0SBarry Smith   MAT_ERROR_LOWER_TRIANGULAR      = 13,
628382164b0SBarry Smith   MAT_GETROW_UPPERTRIANGULAR      = 14,
629382164b0SBarry Smith   MAT_SPD                         = 15,
63092d4d306SBarry Smith   MAT_NO_OFF_PROC_ZERO_ROWS       = 16,
63192d4d306SBarry Smith   MAT_NO_OFF_PROC_ENTRIES         = 17,
63292d4d306SBarry Smith   MAT_NEW_NONZERO_LOCATIONS       = 18,
633c5e4d11fSDmitry Karpeev   MAT_NEW_NONZERO_ALLOCATION_ERR  = 19,
634c5e4d11fSDmitry Karpeev   MAT_SUBSET_OFF_PROC_ENTRIES     = 20,
635c10200c1SHong Zhang   MAT_SUBMAT_SINGLEIS             = 21,
636957cac9fSHong Zhang   MAT_STRUCTURE_ONLY              = 22,
637071fcb05SBarry Smith   MAT_SORTED_FULL                 = 23,
6381a2c6b5cSJunchao Zhang   MAT_FORM_EXPLICIT_TRANSPOSE     = 24,
639b94d7dedSBarry Smith   MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25,
640b94d7dedSBarry Smith   MAT_SPD_ETERNAL                 = 26,
6419371c9d4SSatish Balay   MAT_OPTION_MAX                  = 27
6429371c9d4SSatish Balay } MatOption;
643e057df02SPaul Mullowney 
6440f8fb01aSBarry Smith PETSC_EXTERN const char *const *MatOptions;
645014dd563SJed Brown PETSC_EXTERN PetscErrorCode     MatSetOption(Mat, MatOption, PetscBool);
6467d68702bSBarry Smith PETSC_EXTERN PetscErrorCode     MatGetOption(Mat, MatOption, PetscBool *);
647856afa8bSStefano Zampini PETSC_EXTERN PetscErrorCode     MatPropagateSymmetryOptions(Mat, Mat);
64819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode     MatGetType(Mat, MatType *);
64984cb2905SBarry Smith 
650014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
651014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
652014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
653014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetRowUpperTriangular(Mat);
654014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatRestoreRowUpperTriangular(Mat);
655014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetColumnVector(Mat, Vec, PetscInt);
6568c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArray(Mat, PetscScalar *[]);
6578f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]);
658d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]);
6598c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArray(Mat, PetscScalar *[]);
6608f1ea47aSStefano Zampini PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]);
661d67d9f35SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]);
66221e72a00SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *);
663bd04181cSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
6644099cc6bSBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqAIJSetType(Mat, MatType);
665ad7e164aSPierre Jolivet PETSC_EXTERN PetscErrorCode    MatSeqAIJKron(Mat, Mat, MatReuse, Mat *);
666388d47a6SSatish Balay PETSC_EXTERN PetscErrorCode    MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *));
6674099cc6bSBarry Smith PETSC_EXTERN PetscFunctionList MatSeqAIJList;
668cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJGetArray(Mat, PetscScalar *[]);
669cda14afcSprj- PETSC_EXTERN PetscErrorCode    MatSeqBAIJRestoreArray(Mat, PetscScalar *[]);
6708397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJGetArray(Mat, PetscScalar *[]);
6718397e458SBarry Smith PETSC_EXTERN PetscErrorCode    MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]);
6728c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArray(Mat, PetscScalar *[]);
6738c778c55SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArray(Mat, PetscScalar *[]);
674d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDensePlaceArray(Mat, const PetscScalar[]);
675d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseReplaceArray(Mat, const PetscScalar[]);
676d3042a70SBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseResetArray(Mat);
6778572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseGetArrayRead(Mat, const PetscScalar *[]);
6788572280aSBarry Smith PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayRead(Mat, const PetscScalar *[]);
6796947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWrite(Mat, PetscScalar *[]);
6806947451fSStefano Zampini PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWrite(Mat, PetscScalar *[]);
681cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *);
682cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]);
683cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *);
684cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]);
685cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *);
686cd3f9d89SJunchao Zhang PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]);
687014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSize(Mat, PetscInt *);
688014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSize(Mat, PetscInt);
689014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatGetBlockSizes(Mat, PetscInt *, PetscInt *);
690014dd563SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizes(Mat, PetscInt, PetscInt);
69133d57670SJed Brown PETSC_EXTERN PetscErrorCode    MatSetBlockSizesFromMats(Mat, Mat, Mat);
6920da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode    MatSetVariableBlockSizes(Mat, PetscInt, PetscInt *);
6930da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode    MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt **);
6940da83c2eSBarry Smith 
69586aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]);
69686aefd0dSHong Zhang PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]);
6976947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *);
6986947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *);
6996947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *);
7006947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *);
7016947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *);
7026947451fSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *);
703a2748737SPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
7045ea7661aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *);
7051620fd73SBarry Smith 
706014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec);
707014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec);
708014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec);
709014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec);
710014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec);
711014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *);
712014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *);
713014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec);
714014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec);
715014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat);
716bdc285e1SStefano Zampini PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat);
717eb3ef3b2SHong Zhang PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat);
718f9426fe0SMark Adams PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec);
719f5edf698SHong Zhang 
720d91e6319SBarry Smith /*E
721d91e6319SBarry Smith   MatDuplicateOption - Indicates if a duplicated sparse matrix should have
722d91e6319SBarry Smith   its numerical values copied over or just its nonzero structure.
723d91e6319SBarry Smith 
7242ef1f0ffSBarry Smith   Values:
7252ef1f0ffSBarry Smith + `MAT_DO_NOT_COPY_VALUES`    - Create a matrix using the same nonzero pattern as the original matrix,
7262ef1f0ffSBarry Smith                                 with zeros for the numerical values
7272ef1f0ffSBarry Smith . `MAT_COPY_VALUES`           - Create a matrix with the same nonzero pattern as the original matrix
7282ef1f0ffSBarry Smith                                 and with the same numerical values.
7292ef1f0ffSBarry Smith - `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix
7302ef1f0ffSBarry Smith                                 and does not copy it, using zeros for the numerical values. The parent and
7312ef1f0ffSBarry Smith                                 child matrices will share their index (i and j) arrays, and you cannot
7322ef1f0ffSBarry Smith                                 insert new nonzero entries into either matrix
7330018da39SRichard Tran Mills 
73416a05f60SBarry Smith   Level: beginner
73516a05f60SBarry Smith 
73687497f52SBarry Smith   Note:
73787497f52SBarry Smith   Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in
73887497f52SBarry Smith   this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified.
73970dcbbb9SBarry Smith 
7401cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDuplicate()`
741d91e6319SBarry Smith E*/
7429371c9d4SSatish Balay typedef enum {
7439371c9d4SSatish Balay   MAT_DO_NOT_COPY_VALUES,
7449371c9d4SSatish Balay   MAT_COPY_VALUES,
7459371c9d4SSatish Balay   MAT_SHARE_NONZERO_PATTERN
7469371c9d4SSatish Balay } MatDuplicateOption;
7472e8a6d31SBarry Smith 
74819fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *);
749014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *);
75094a9d846SBarry Smith 
751014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure);
752014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer);
753014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *);
754014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *);
755014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *);
756014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *);
757014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *);
758b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *);
759b94d7dedSBarry Smith PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *);
760014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *);
761014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer);
7627b80b807SBarry Smith 
7631a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7641a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7651a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
7661a83f524SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
767d4fbbf0eSBarry Smith 
768d91e6319SBarry Smith /*S
76987497f52SBarry Smith    MatInfo - Context of matrix information, used with `MatGetInfo()`
770d91e6319SBarry Smith 
771d91e6319SBarry Smith    Level: intermediate
772d91e6319SBarry Smith 
7732ef1f0ffSBarry Smith    Fortran Note:
7742ef1f0ffSBarry Smith    Information is stored as a double-precision array of dimension `MAT_INFO_SIZE`
7752ef1f0ffSBarry Smith 
7761cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetInfo()`, `MatInfoType`
777d91e6319SBarry Smith S*/
7784e220ebcSLois Curfman McInnes typedef struct {
779b0a32e0cSBarry Smith   PetscLogDouble block_size;                          /* block size */
780b0a32e0cSBarry Smith   PetscLogDouble nz_allocated, nz_used, nz_unneeded;  /* number of nonzeros */
781b0a32e0cSBarry Smith   PetscLogDouble memory;                              /* memory allocated */
782b0a32e0cSBarry Smith   PetscLogDouble assemblies;                          /* number of matrix assemblies called */
783b0a32e0cSBarry Smith   PetscLogDouble mallocs;                             /* number of mallocs during MatSetValues() */
784b0a32e0cSBarry Smith   PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */
785b0a32e0cSBarry Smith   PetscLogDouble factor_mallocs;                      /* number of mallocs during factorization */
7864e220ebcSLois Curfman McInnes } MatInfo;
7874e220ebcSLois Curfman McInnes 
788d9274352SBarry Smith /*E
789d9274352SBarry Smith     MatInfoType - Indicates if you want information about the local part of the matrix,
790d9274352SBarry Smith     the entire parallel matrix or the maximum over all the local parts.
791d9274352SBarry Smith 
7922ef1f0ffSBarry Smith     Values:
7932ef1f0ffSBarry Smith +   `MAT_LOCAL`      - values for each MPI process part of the matrix
7942ef1f0ffSBarry Smith .   `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes
7952ef1f0ffSBarry Smith -   `MAT_GLOBAL_SUM` - sum of each value over all MPI processes
796d9274352SBarry Smith 
79716a05f60SBarry Smith     Level: beginner
79816a05f60SBarry Smith 
7991cc06b55SBarry Smith .seealso: [](ch_matrices), `MatGetInfo()`, `MatInfo`
800d9274352SBarry Smith E*/
8019371c9d4SSatish Balay typedef enum {
8029371c9d4SSatish Balay   MAT_LOCAL      = 1,
8039371c9d4SSatish Balay   MAT_GLOBAL_MAX = 2,
8049371c9d4SSatish Balay   MAT_GLOBAL_SUM = 3
8059371c9d4SSatish Balay } MatInfoType;
806014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *);
807014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec);
808014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]);
809014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]);
810014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]);
811*eede4a3fSMark Adams PETSC_EXTERN PetscErrorCode MatGetRowSumAbs(Mat, Vec);
812014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]);
813014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec);
814014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *);
8157fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *);
8167fb60732SBarry Smith PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat);
817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *);
818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *);
819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec);
820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode);
821a52676ecSHong Zhang 
822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *);
823014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *);
824014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *);
825014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
826014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
827e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
828e573050aSPierre Jolivet PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
829a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
830a52676ecSHong Zhang PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
831cc48ffa7SToby Isaac PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
8324222ddf1SHong Zhang PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
833447fed29SStefano Zampini PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
83486919fd6SHong Zhang PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *);
8357b80b807SBarry Smith 
836014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *);
837014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *);
838857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *);
839857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *);
840857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *);
841857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *);
842857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *);
843857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *);
844857cbf51SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *);
845014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat);
8461b2b9847SBarry Smith PETSC_EXTERN PetscErrorCode MatSetInf(Mat);
847014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
848014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec);
849014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
850014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
851014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
852014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec);
8537b80b807SBarry Smith 
854014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *);
855014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *);
856014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *);
857014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **);
858014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *);
859014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **);
860566876eaSJed Brown PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *);
8615ef9f2a5SBarry Smith 
8627dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
863edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrices()", ) static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
864d71ae5a4SJacob Faibussowitsch {
8659371c9d4SSatish Balay   return MatCreateSubMatrices(mat, n, irow, icol, scall, submat);
8669371c9d4SSatish Balay }
8677dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
868edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatricesMPI()", ) static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
869d71ae5a4SJacob Faibussowitsch {
8709371c9d4SSatish Balay   return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat);
8719371c9d4SSatish Balay }
872014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]);
873df750dc8SHong Zhang PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]);
8747dae84e0SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *);
875edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrix()", ) static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat)
876d71ae5a4SJacob Faibussowitsch {
8779371c9d4SSatish Balay   return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat);
8789371c9d4SSatish Balay }
879014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *);
880014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *);
881014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *);
882014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *);
8837b80b807SBarry Smith 
884014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *);
885014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *);
886014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat);
887014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *);
8888a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *);
889014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
890ed502f03SStefano Zampini PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *);
891f2afee66SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *);
892014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *);
893014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]);
8948efafbd8SBarry Smith 
895014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt);
896aa1e27eaSFande Kong PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov);
897d2b2a242SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool);
8987b80b807SBarry Smith 
899014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
90022440eb1SKris Buschelman 
9017bab7c10SHong Zhang PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
9022df6c5c3SPatrick Farrell PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
9037bab7c10SHong Zhang 
904014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *);
905014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *);
90622440eb1SKris Buschelman 
907014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
908014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *);
909bc011b1eSHong Zhang 
910014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure);
911014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure);
9121c741599SHong Zhang 
913014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar);
914014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar);
9157b80b807SBarry Smith 
916014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping);
917014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
918a93ff8c4SPeter Brune PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *);
91981fa06acSBarry Smith PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout);
920014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
921014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
922014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
923014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
924e265f6d6SPatrick Sanan PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
925014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
926014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
927052efed2SBarry Smith 
928014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt);
929014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *);
93090f02eecSBarry Smith 
931014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec);
932014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec);
933014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec);
93430b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *);
93530b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *);
93630b0564aSStefano Zampini PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *);
9372a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *);
938edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 6, 0, "MatCreateVecs()", ) static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y)
939d71ae5a4SJacob Faibussowitsch {
9409371c9d4SSatish Balay   return MatCreateVecs(mat, x, y);
9419371c9d4SSatish Balay }
94253cd1579SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *);
943014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *);
944014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *);
9453a062f41SBarry Smith PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *);
9469c8f2541SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *);
947bd481603SBarry Smith 
948c8d6c325SJunchao Zhang /*@C
9491620fd73SBarry Smith    MatSetValue - Set a single entry into a matrix.
9501620fd73SBarry Smith 
951e1c5b2e2SJose E. Roman    Not Collective
952a9834a7dSSatish Balay 
9531620fd73SBarry Smith    Input Parameters:
954c8d6c325SJunchao Zhang +  mat  - the matrix
95516a05f60SBarry Smith .  i    - the row location of the entry
95616a05f60SBarry Smith .  j    - the column location of the entry
95716a05f60SBarry Smith .  va   - the value to insert
95887497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
9591620fd73SBarry Smith 
9601620fd73SBarry Smith    Level: beginner
9611620fd73SBarry Smith 
96295bd0b28SBarry Smith    Notes:
96395bd0b28SBarry Smith    This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()`
96495bd0b28SBarry Smith    MUST be called after all calls to `MatSetValue()` have been completed.
96595bd0b28SBarry Smith 
9662ef1f0ffSBarry Smith    For efficiency one should use `MatSetValues()` and set several values simultaneously.
9672ef1f0ffSBarry Smith 
968b43fc34aSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `InsertMode`, `MatGetValue()`, `MatSetValues()`,
9692ef1f0ffSBarry Smith           `MatSetValueLocal()`, `MatSetValuesLocal()`
970c8d6c325SJunchao Zhang @*/
971c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValue(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
972d71ae5a4SJacob Faibussowitsch {
973c8d6c325SJunchao Zhang   return MatSetValues(mat, 1, &i, 1, &j, &va, mode);
9749371c9d4SSatish Balay }
9751620fd73SBarry Smith 
976e5e5a7b5SPatrick Sanan /*@C
977e5e5a7b5SPatrick Sanan    MatGetValue - Gets a single value from a matrix
9781620fd73SBarry Smith 
979e5e5a7b5SPatrick Sanan    Not Collective; can only return a value owned by the given process
980e5e5a7b5SPatrick Sanan 
981e5e5a7b5SPatrick Sanan    Input Parameters:
982e5e5a7b5SPatrick Sanan +  mat - the matrix
983e5e5a7b5SPatrick Sanan .  row - the row location of the entry
984e5e5a7b5SPatrick Sanan -  col - the column location of the entry
985e5e5a7b5SPatrick Sanan 
986e5e5a7b5SPatrick Sanan    Output Parameter:
987e5e5a7b5SPatrick Sanan .  va - the value
988e5e5a7b5SPatrick Sanan 
9892ef1f0ffSBarry Smith    Level: advanced
9902ef1f0ffSBarry Smith 
991e5e5a7b5SPatrick Sanan    Notes:
992b43fc34aSPierre Jolivet    The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd()` before this call
9932ef1f0ffSBarry Smith 
99487497f52SBarry Smith    For efficiency one should use `MatGetValues()` and get several values simultaneously.
995e5e5a7b5SPatrick Sanan 
99687497f52SBarry Smith    See notes for `MatGetValues()`.
997e5e5a7b5SPatrick Sanan 
998b43fc34aSPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()`
999e5e5a7b5SPatrick Sanan @*/
1000d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va)
1001d71ae5a4SJacob Faibussowitsch {
10029371c9d4SSatish Balay   return MatGetValues(mat, 1, &row, 1, &col, va);
10039371c9d4SSatish Balay }
1004e5e5a7b5SPatrick Sanan 
1005c8d6c325SJunchao Zhang /*@C
10062ef1f0ffSBarry Smith    MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes.
1007e5e5a7b5SPatrick Sanan 
1008e5e5a7b5SPatrick Sanan    Not Collective
1009e5e5a7b5SPatrick Sanan 
1010e5e5a7b5SPatrick Sanan    Input Parameters:
1011c8d6c325SJunchao Zhang +  mat  - the matrix
101216a05f60SBarry Smith .  i    - the row location of the entry
101316a05f60SBarry Smith .  j    - the column location of the entry
101416a05f60SBarry Smith .  va   - the value to insert
101587497f52SBarry Smith -  mode - either `INSERT_VALUES` or `ADD_VALUES`
1016e5e5a7b5SPatrick Sanan 
10172ef1f0ffSBarry Smith    Level: intermediate
10182ef1f0ffSBarry Smith 
1019e5e5a7b5SPatrick Sanan    Notes:
102087497f52SBarry Smith    For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously.
1021e5e5a7b5SPatrick Sanan 
102287497f52SBarry Smith    See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used.
1023e5e5a7b5SPatrick Sanan 
10241cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSetValue()`, `MatSetValuesLocal()`
1025c8d6c325SJunchao Zhang @*/
1026c8d6c325SJunchao Zhang static inline PetscErrorCode MatSetValueLocal(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
1027d71ae5a4SJacob Faibussowitsch {
1028c8d6c325SJunchao Zhang   return MatSetValuesLocal(mat, 1, &i, 1, &j, &va, mode);
10299371c9d4SSatish Balay }
10301620fd73SBarry Smith 
10311620fd73SBarry Smith /*MC
1032d0609cedSBarry Smith    MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per
1033bd481603SBarry Smith    row in a matrix providing the data that one can use to correctly preallocate the matrix.
1034bd481603SBarry Smith 
1035bd481603SBarry Smith    Synopsis:
1036aaa7dc30SBarry Smith    #include <petscmat.h>
1037d0609cedSBarry Smith    PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz)
1038bd481603SBarry Smith 
1039d083f849SBarry Smith    Collective
1040bd481603SBarry Smith 
1041bd481603SBarry Smith    Input Parameters:
1042bd481603SBarry Smith +  comm  - the communicator that will share the eventually allocated matrix
1043859fcb39SBarry Smith .  nrows - the number of LOCAL rows in the matrix
1044859fcb39SBarry Smith -  ncols - the number of LOCAL columns in the matrix
1045bd481603SBarry Smith 
1046bd481603SBarry Smith    Output Parameters:
1047bd481603SBarry Smith +  dnz - the array that will be passed to the matrix preallocation routines
1048a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1049bd481603SBarry Smith 
10502ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1051bd481603SBarry Smith 
1052bd481603SBarry Smith    Notes:
10532ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
10542ef1f0ffSBarry Smith    the use of this routine
10552ef1f0ffSBarry Smith 
1056d0609cedSBarry Smith    This is a macro that handles its own error checking, it does not return an error code.
1057d0609cedSBarry Smith 
10582ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1059bd481603SBarry Smith 
10602ef1f0ffSBarry Smith    Developer Note:
1061af27ebaaSBarry Smith    This is a MACRO, not a function, because it has a leading { that is closed by `PetscPreallocateFinalize()`.
1062bd481603SBarry Smith 
10631cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1064db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1065bd481603SBarry Smith M*/
10669371c9d4SSatish Balay #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \
10679371c9d4SSatish Balay   do { \
10683ba16761SJacob Faibussowitsch     PetscInt              __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \
10693ba16761SJacob Faibussowitsch     PetscInt PETSC_UNUSED __start; \
10709566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \
10719566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \
10729371c9d4SSatish Balay     __start = __end - __ncols; \
10739371c9d4SSatish Balay     (void)__start; \
10749566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \
10755f80ce2aSJacob Faibussowitsch   __rstart -= __nrows
10767c922b88SBarry Smith 
1077edd03b47SJacob Faibussowitsch #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateBegin()", ) MatPreallocateBegin(__VA_ARGS__)
1078d0609cedSBarry Smith 
1079bd481603SBarry Smith /*MC
1080bd481603SBarry Smith    MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1081bd481603SBarry Smith    inserted using a local number of the rows and columns
1082bd481603SBarry Smith 
1083bd481603SBarry Smith    Synopsis:
1084aaa7dc30SBarry Smith    #include <petscmat.h>
1085c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1086bd481603SBarry Smith 
1087bd481603SBarry Smith    Not Collective
1088bd481603SBarry Smith 
1089bd481603SBarry Smith    Input Parameters:
1090784ac674SJed Brown +  map   - the row mapping from local numbering to global numbering
1091bd481603SBarry Smith .  nrows - the number of rows indicated
10921d73ed98SBarry Smith .  rows  - the indices of the rows
1093784ac674SJed Brown .  cmap  - the column mapping from local to global numbering
1094bd481603SBarry Smith .  ncols - the number of columns in the matrix
1095bd481603SBarry Smith .  cols  - the columns indicated
1096bd481603SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1097a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1098bd481603SBarry Smith 
10992ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1100bd481603SBarry Smith 
1101bd481603SBarry Smith    Notes:
11022ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11032ef1f0ffSBarry Smith    the use of this routine
1104bd481603SBarry Smith 
11052ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1106bd481603SBarry Smith 
11071cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1108db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()`
1109bd481603SBarry Smith M*/
111094bad497SJacob Faibussowitsch #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11119371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1112c4f061fbSSatish Balay 
1113bd481603SBarry Smith /*MC
1114c1154cd5SBarry Smith    MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1115c1154cd5SBarry Smith    inserted using a local number of the rows and columns. This version removes any duplicate columns in cols
1116c1154cd5SBarry Smith 
1117c1154cd5SBarry Smith    Synopsis:
1118c1154cd5SBarry Smith    #include <petscmat.h>
1119c1154cd5SBarry Smith    PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1120c1154cd5SBarry Smith 
1121c1154cd5SBarry Smith    Not Collective
1122c1154cd5SBarry Smith 
1123c1154cd5SBarry Smith    Input Parameters:
1124c1154cd5SBarry Smith +  map   - the row mapping from local numbering to global numbering
1125c1154cd5SBarry Smith .  nrows - the number of rows indicated
1126c1154cd5SBarry Smith .  rows  - the indices of the rows (these values are mapped to the global values)
1127c1154cd5SBarry Smith .  cmap  - the column mapping from local to global numbering
1128c1154cd5SBarry Smith .  ncols - the number of columns in the matrix   (this value will be changed if duplicate columns are found)
1129c1154cd5SBarry Smith .  cols  - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed)
1130c1154cd5SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1131a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1132c1154cd5SBarry Smith 
11332ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1134c1154cd5SBarry Smith 
1135c1154cd5SBarry Smith    Notes:
11362ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11372ef1f0ffSBarry Smith    the use of this routine
1138c1154cd5SBarry Smith 
11392ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1140c1154cd5SBarry Smith 
11411cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1142db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1143c1154cd5SBarry Smith M*/
114494bad497SJacob Faibussowitsch #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11459371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1146c1154cd5SBarry Smith 
1147c1154cd5SBarry Smith /*MC
1148d6e23781SBarry Smith    MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1149bd481603SBarry Smith    inserted using a local number of the rows and columns
1150bd481603SBarry Smith 
1151bd481603SBarry Smith    Synopsis:
1152aaa7dc30SBarry Smith    #include <petscmat.h>
1153d6e23781SBarry Smith    PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1154d6e23781SBarry Smith 
1155d6e23781SBarry Smith    Not Collective
1156d6e23781SBarry Smith 
1157d6e23781SBarry Smith    Input Parameters:
1158d6e23781SBarry Smith +  map   - the row mapping from local numbering to global numbering
1159d6e23781SBarry Smith .  nrows - the number of rows indicated
1160d6e23781SBarry Smith .  rows  - the indices of the rows
1161d6e23781SBarry Smith .  cmap  - the column mapping from local to global numbering
1162d6e23781SBarry Smith .  ncols - the number of columns in the matrix
1163d6e23781SBarry Smith .  cols  - the columns indicated
1164d6e23781SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1165a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1166d6e23781SBarry Smith 
11672ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1168d6e23781SBarry Smith 
1169d6e23781SBarry Smith    Notes:
11702ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
11712ef1f0ffSBarry Smith    the use of this routine
1172d6e23781SBarry Smith 
11732ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1174d6e23781SBarry Smith 
11751cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1176db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`
1177d6e23781SBarry Smith M*/
117894bad497SJacob Faibussowitsch #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
11799371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1180d6e23781SBarry Smith 
1181d6e23781SBarry Smith /*MC
1182d6e23781SBarry Smith    MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1183d6e23781SBarry Smith    inserted using a local number of the rows and columns
1184d6e23781SBarry Smith 
1185d6e23781SBarry Smith    Synopsis:
1186d6e23781SBarry Smith    #include <petscmat.h>
1187d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1188bd481603SBarry Smith 
1189bd481603SBarry Smith    Not Collective
1190bd481603SBarry Smith 
1191bd481603SBarry Smith    Input Parameters:
1192bd481603SBarry Smith +  map   - the mapping between local numbering and global numbering
1193bd481603SBarry Smith .  nrows - the number of rows indicated
11941d73ed98SBarry Smith .  rows  - the indices of the rows
1195bd481603SBarry Smith .  ncols - the number of columns in the matrix
1196bd481603SBarry Smith .  cols  - the columns indicated
1197bd481603SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1198a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1199bd481603SBarry Smith 
12002ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1201bd481603SBarry Smith 
1202bd481603SBarry Smith    Notes:
12032ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12042ef1f0ffSBarry Smith    the use of this routine
1205bd481603SBarry Smith 
12062ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1207bd481603SBarry Smith 
12081cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`
1209db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1210bd481603SBarry Smith M*/
121194bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \
12129371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));)
1213e83a5d19SLisandro Dalcin 
1214bd481603SBarry Smith /*MC
1215bd481603SBarry Smith    MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1216bd481603SBarry Smith    inserted using a local number of the rows and columns
1217bd481603SBarry Smith 
1218bd481603SBarry Smith    Synopsis:
1219aaa7dc30SBarry Smith    #include <petscmat.h>
1220c1ac3661SBarry Smith    PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1221bd481603SBarry Smith 
1222bd481603SBarry Smith    Not Collective
1223bd481603SBarry Smith 
1224bd481603SBarry Smith    Input Parameters:
122564075487SBarry Smith +  row   - the row
1226bd481603SBarry Smith .  ncols - the number of columns in the matrix
1227a50f8bf6SHong Zhang -  cols  - the columns indicated
1228a50f8bf6SHong Zhang 
1229a50f8bf6SHong Zhang    Output Parameters:
1230a50f8bf6SHong Zhang +  dnz - the array that will be passed to the matrix preallocation routines
1231a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1232bd481603SBarry Smith 
12332ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1234bd481603SBarry Smith 
1235bd481603SBarry Smith    Notes:
12362ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12372ef1f0ffSBarry Smith    the use of this routine
1238bd481603SBarry Smith 
12392ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1240bd481603SBarry Smith 
1241af27ebaaSBarry Smith    This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin().
12421620fd73SBarry Smith 
12431cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1244db781477SPatrick Sanan           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1245bd481603SBarry Smith M*/
12469371c9d4SSatish Balay #define MatPreallocateSet(row, nc, cols, dnz, onz) \
12479371c9d4SSatish Balay   PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \
124864075487SBarry Smith     if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \
1249a6042fd4SStefano Zampini     else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12509371c9d4SSatish Balay   })
12517c922b88SBarry Smith 
1252bd481603SBarry Smith /*MC
1253d6e23781SBarry Smith    MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1254bd481603SBarry Smith    inserted using a local number of the rows and columns
1255bd481603SBarry Smith 
1256bd481603SBarry Smith    Synopsis:
1257aaa7dc30SBarry Smith    #include <petscmat.h>
1258d6e23781SBarry Smith    PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1259bd481603SBarry Smith 
1260bd481603SBarry Smith    Not Collective
1261bd481603SBarry Smith 
1262bd481603SBarry Smith    Input Parameters:
1263bd481603SBarry Smith +  nrows - the number of rows indicated
12641d73ed98SBarry Smith .  rows  - the indices of the rows
1265bd481603SBarry Smith .  ncols - the number of columns in the matrix
1266bd481603SBarry Smith .  cols  - the columns indicated
1267bd481603SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1268a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
1269bd481603SBarry Smith 
12702ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1271bd481603SBarry Smith 
1272bd481603SBarry Smith    Notes:
12732ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
12742ef1f0ffSBarry Smith    the use of this routine
1275bd481603SBarry Smith 
12762ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1277bd481603SBarry Smith 
1278af27ebaaSBarry Smith    This is a MACRO, not a function, because it uses variables declared in MatPreallocateBegin().
12791620fd73SBarry Smith 
12801cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`,
1281db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1282bd481603SBarry Smith M*/
128394bad497SJacob Faibussowitsch #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \
12849371c9d4SSatish Balay   PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \
1285d3d32019SBarry Smith     if (cols[__i] >= __end) onz[row - __rstart]++; \
1286a6042fd4SStefano Zampini     else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
12879371c9d4SSatish Balay   })
1288d3d32019SBarry Smith 
1289bd481603SBarry Smith /*MC
1290a6042fd4SStefano Zampini    MatPreallocateLocation -  An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists
129116371a99SBarry Smith 
129216371a99SBarry Smith    Synopsis:
1293aaa7dc30SBarry Smith    #include <petscmat.h>
129416371a99SBarry Smith    PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz)
129516371a99SBarry Smith 
129616371a99SBarry Smith    Not Collective
129716371a99SBarry Smith 
129816371a99SBarry Smith    Input Parameters:
1299a2b725a8SWilliam Gropp +  A     - matrix
130016371a99SBarry Smith .  row   - row where values exist (must be local to this process)
130116371a99SBarry Smith .  ncols - number of columns
130216371a99SBarry Smith .  cols  - columns with nonzeros
130316371a99SBarry Smith .  dnz   - the array that will be passed to the matrix preallocation routines
1304a6042fd4SStefano Zampini -  onz   - the other array passed to the matrix preallocation routines
130516371a99SBarry Smith 
13062ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
130716371a99SBarry Smith 
130816371a99SBarry Smith    Notes:
13092ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
13102ef1f0ffSBarry Smith    the use of this routine
131116371a99SBarry Smith 
13122ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
131316371a99SBarry Smith 
1314af27ebaaSBarry Smith    Developer Note:
1315af27ebaaSBarry Smith    This is a MACRO, not a function, because it uses a bunch of variables private to the MatPreallocation.... routines.
131616371a99SBarry Smith 
13171cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1318db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
131916371a99SBarry Smith M*/
1320d0609cedSBarry Smith #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz))
132116371a99SBarry Smith 
132216371a99SBarry Smith /*MC
1323d0609cedSBarry Smith    MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per
1324bd481603SBarry Smith    row in a matrix providing the data that one can use to correctly preallocate the matrix.
1325bd481603SBarry Smith 
1326bd481603SBarry Smith    Synopsis:
1327aaa7dc30SBarry Smith    #include <petscmat.h>
1328d0609cedSBarry Smith    PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz)
1329bd481603SBarry Smith 
1330d083f849SBarry Smith    Collective
1331bd481603SBarry Smith 
1332bd481603SBarry Smith    Input Parameters:
133316371a99SBarry Smith +  dnz - the array that was be passed to the matrix preallocation routines
1334a6042fd4SStefano Zampini -  onz - the other array passed to the matrix preallocation routines
1335bd481603SBarry Smith 
13362ef1f0ffSBarry Smith    Level: deprecated (since v3.19)
1337bd481603SBarry Smith 
1338bd481603SBarry Smith    Notes:
13392ef1f0ffSBarry Smith    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
13402ef1f0ffSBarry Smith    the use of this routine
1341d0609cedSBarry Smith 
13422ef1f0ffSBarry Smith    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1343bd481603SBarry Smith 
13442ef1f0ffSBarry Smith    Developer Note:
1345af27ebaaSBarry Smith    This is a MACRO, not a function, because it closes the { started in MatPreallocateBegin().
13461620fd73SBarry Smith 
13471cc06b55SBarry Smith .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1348db781477SPatrick Sanan           `MatPreallocateSymmetricSetLocalBlock()`
1349bd481603SBarry Smith M*/
13509371c9d4SSatish Balay #define MatPreallocateEnd(dnz, onz) \
13519371c9d4SSatish Balay   PetscCall(PetscFree2(dnz, onz)); \
13529371c9d4SSatish Balay   } \
13539371c9d4SSatish Balay   while (0)
1354d0609cedSBarry Smith 
1355edd03b47SJacob Faibussowitsch #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateEnd()", ) MatPreallocateEnd(__VA_ARGS__)
13567c922b88SBarry Smith 
13577b80b807SBarry Smith /* Routines unique to particular data structures */
1358014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *);
1359698d4c6aSKris Buschelman 
1360014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *);
1361014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *);
1362698d4c6aSKris Buschelman 
1363014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]);
1364014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]);
1365014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1366014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1367014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1368014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool);
13697b80b807SBarry Smith 
1370a96a251dSBarry Smith #define MAT_SKIP_ALLOCATION -4
1371a96a251dSBarry Smith 
1372014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1373014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1374014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]);
137519b08ed1SBarry Smith PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt);
1376273d9f13SBarry Smith 
1377014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1378014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1379014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1380014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1381014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1382014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1383014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1384014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]);
1385b44e7856SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *);
1386252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *);
1387014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]);
1388014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]);
13899230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
13909230625dSJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
1391014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *);
1392273d9f13SBarry Smith 
139349a6ff4bSBarry Smith PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *);
1394ad16ce7aSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt);
1395edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatDenseSetLDA()", ) static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda)
1396d71ae5a4SJacob Faibussowitsch {
13979371c9d4SSatish Balay   return MatDenseSetLDA(A, lda);
13989371c9d4SSatish Balay }
1399014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *);
14001b807ce4Svictorle 
1401621e819fSSatish Balay PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1402621e819fSSatish Balay 
1403014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatStoreValues(Mat);
1404014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat);
14052e8a6d31SBarry Smith 
1406014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *);
14077cfe41e4SPatrick Farrell PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *);
14087b80b807SBarry Smith /*
14097b80b807SBarry Smith   These routines are not usually accessed directly, rather solving is
141094b7f48cSBarry Smith   done through the KSP and PC interfaces.
14117b80b807SBarry Smith */
14127b80b807SBarry Smith 
141376bdecfbSBarry Smith /*J
14142ef1f0ffSBarry Smith    MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used
14152ef1f0ffSBarry Smith    to reduce fill in sparse factorizations.
1416d9274352SBarry Smith 
1417d9274352SBarry Smith    Level: beginner
1418d9274352SBarry Smith 
14192c7c0729SBarry Smith    Notes:
142016a05f60SBarry Smith    If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one
142116a05f60SBarry Smith    of its own.
14222c7c0729SBarry Smith 
14232ef1f0ffSBarry Smith    There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()`
14242ef1f0ffSBarry Smith 
14252ef1f0ffSBarry Smith    Developer Note:
14262ef1f0ffSBarry Smith    This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning`
14272ef1f0ffSBarry Smith 
14281cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`,
14292ef1f0ffSBarry Smith           `PCFactorSetOrderingType()`
143076bdecfbSBarry Smith J*/
143119fd82e9SBarry Smith typedef const char *MatOrderingType;
14322692d6eeSBarry Smith #define MATORDERINGNATURAL       "natural"
14332692d6eeSBarry Smith #define MATORDERINGND            "nd"
14342692d6eeSBarry Smith #define MATORDERING1WD           "1wd"
14352692d6eeSBarry Smith #define MATORDERINGRCM           "rcm"
14362692d6eeSBarry Smith #define MATORDERINGQMD           "qmd"
14372692d6eeSBarry Smith #define MATORDERINGROWLENGTH     "rowlength"
1438510184a7SJed Brown #define MATORDERINGWBM           "wbm"
1439fc1bef75SJed Brown #define MATORDERINGSPECTRAL      "spectral"
1440312e372aSBarry Smith #define MATORDERINGAMD           "amd"           /* only works if UMFPACK is installed with PETSc */
1441048412efSPablo Brubeck #define MATORDERINGMETISND       "metisnd"       /* only works if METIS is installed with PETSc */
14429bd791bbSBarry Smith #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */
14432c7c0729SBarry Smith #define MATORDERINGEXTERNAL      "external"      /* uses an ordering type internal to the factorization package */
1444b12f92e5SBarry Smith 
144519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrdering(Mat, MatOrderingType, IS *, IS *);
1446140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode    MatGetOrderingList(PetscFunctionList *);
1447bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode    MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *));
1448140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList MatOrderingList;
1449d4fbbf0eSBarry Smith 
1450013e2dc7SBarry Smith #include "petscmatcoarsen.h"
1451013e2dc7SBarry Smith 
1452014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS);
1453fc1bef75SJed Brown PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *);
1454a2ce50c7SBarry Smith 
14554ac6704cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *);
14564ac6704cSBarry Smith 
1457d91e6319SBarry Smith /*S
14582ef1f0ffSBarry Smith    MatFactorShiftType - Type of numeric shift used for factorizations
1459d90ac83dSHong Zhang 
14602ef1f0ffSBarry Smith    Values:
14612ef1f0ffSBarry Smith +  `MAT_SHIFT_NONE`              - do not shift the matrix diagonal entries
14622ef1f0ffSBarry Smith .  `MAT_SHIFT_NONZERO`           - shift the entries to be non-zero
14632ef1f0ffSBarry Smith .  `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite
14642ef1f0ffSBarry Smith -  `MAT_SHIFT_INBLOCKS`          - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ`
1465d90ac83dSHong Zhang 
14662ef1f0ffSBarry Smith    Level: intermediate
14672ef1f0ffSBarry Smith 
14681cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()`
1469d90ac83dSHong Zhang S*/
14709371c9d4SSatish Balay typedef enum {
14719371c9d4SSatish Balay   MAT_SHIFT_NONE,
14729371c9d4SSatish Balay   MAT_SHIFT_NONZERO,
14739371c9d4SSatish Balay   MAT_SHIFT_POSITIVE_DEFINITE,
14749371c9d4SSatish Balay   MAT_SHIFT_INBLOCKS
14759371c9d4SSatish Balay } MatFactorShiftType;
14766a6fc655SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypes[];
14775e9742b9SJed Brown PETSC_EXTERN const char *const MatFactorShiftTypesDetail[];
1478d90ac83dSHong Zhang 
1479d90ac83dSHong Zhang /*S
1480ec5066bdSBarry Smith     MatFactorError - indicates what type of error was generated in a matrix factorization
14819aa7eafdSHong Zhang 
14822ef1f0ffSBarry Smith     Values:
14832ef1f0ffSBarry Smith +   `MAT_FACTOR_NOERROR`           - there was no error during the factorization
14842ef1f0ffSBarry Smith .   `MAT_FACTOR_STRUCT_ZEROPIVOT`  - there was a missing entry in a diagonal location of the matrix
14852ef1f0ffSBarry Smith .   `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization
14862ef1f0ffSBarry Smith .   `MAT_FACTOR_OUTMEMORY`         - the factorization has run out of memory
14872ef1f0ffSBarry Smith -   `MAT_FACTOR_OTHER`             - some other error has occurred.
14889aa7eafdSHong Zhang 
14892ef1f0ffSBarry Smith     Level: intermediate
149000e125f8SBarry Smith 
14912ef1f0ffSBarry Smith     Note:
14922ef1f0ffSBarry Smith     When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason`
14932ef1f0ffSBarry Smith 
14941cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`,
14952ef1f0ffSBarry Smith           `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason`
14969aa7eafdSHong Zhang S*/
14979371c9d4SSatish Balay typedef enum {
14989371c9d4SSatish Balay   MAT_FACTOR_NOERROR,
14999371c9d4SSatish Balay   MAT_FACTOR_STRUCT_ZEROPIVOT,
15009371c9d4SSatish Balay   MAT_FACTOR_NUMERIC_ZEROPIVOT,
15019371c9d4SSatish Balay   MAT_FACTOR_OUTMEMORY,
15029371c9d4SSatish Balay   MAT_FACTOR_OTHER
15039371c9d4SSatish Balay } MatFactorError;
15049aa7eafdSHong Zhang 
150500e125f8SBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *);
1506b8b68cfdSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat);
15077b6c816cSBarry Smith PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *);
150800e125f8SBarry Smith 
15099aa7eafdSHong Zhang /*S
1510422a814eSBarry Smith    MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization
1511b00f7748SHong Zhang 
1512b00f7748SHong Zhang    Level: developer
1513b00f7748SHong Zhang 
15142ef1f0ffSBarry Smith    Note:
15152ef1f0ffSBarry Smith    You can use `MatFactorInfoInitialize()` to set default values.
1516b00f7748SHong Zhang 
15172ef1f0ffSBarry Smith    Fortran Note:
15182ef1f0ffSBarry Smith    The data is available in a double precision arrays of size `MAT_FACTORINFO_SIZE`
15192ef1f0ffSBarry Smith 
15201cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`,
15212ef1f0ffSBarry Smith           `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()`
1522b00f7748SHong Zhang S*/
1523b00f7748SHong Zhang typedef struct {
152415e8a5b3SHong Zhang   PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */
152585317021SBarry Smith   PetscReal usedt;
152615e8a5b3SHong Zhang   PetscReal dt;            /* drop tolerance */
1527b00f7748SHong Zhang   PetscReal dtcol;         /* tolerance for pivoting */
152815e8a5b3SHong Zhang   PetscReal dtcount;       /* maximum nonzeros to be allowed per row */
152967e28bfeSBarry Smith   PetscReal fill;          /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */
1530348344bbSBarry Smith   PetscReal levels;        /* ICC/ILU(levels) */
1531bcd9e38bSBarry Smith   PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0
1532bcd9e38bSBarry Smith                                    factorization may be faster if do not pivot */
153315e8a5b3SHong Zhang   PetscReal zeropivot;     /* pivot is called zero if less than this */
1534f4db908eSBarry Smith   PetscReal shifttype;     /* type of shift added to matrix factor to prevent zero pivots */
1535f4db908eSBarry Smith   PetscReal shiftamount;   /* how large the shift is */
153615e8a5b3SHong Zhang } MatFactorInfo;
1537ffa6d0a5SLois Curfman McInnes 
1538014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *);
15399a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *);
15409a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15419a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *);
15429a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *);
15439a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *);
15449a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15459a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
15469a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15479a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *);
15489a625307SHong Zhang PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *);
15493f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *);
15503f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
15513f498edaSToby Isaac PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *);
1552014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *);
1553014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec);
1554014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec);
1555014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec);
1556014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec);
1557014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec);
1558014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec);
1559014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs);
15607c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat);
15617c2f51b8SStefano Zampini 
15629371c9d4SSatish Balay typedef enum {
15639371c9d4SSatish Balay   MAT_FACTOR_SCHUR_UNFACTORED,
15649371c9d4SSatish Balay   MAT_FACTOR_SCHUR_FACTORED,
15659371c9d4SSatish Balay   MAT_FACTOR_SCHUR_INVERTED
15669371c9d4SSatish Balay } MatFactorSchurStatus;
15678e7ba810SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS);
15687c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15697c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus);
15705a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat);
15717c2f51b8SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
15725a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec);
15735a05ddb0SStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec);
15746dba178dSStefano Zampini PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat);
1575bb5a7306SBarry Smith 
15768a9c020eSBarry Smith PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat);
1577d91e6319SBarry Smith /*E
1578d91e6319SBarry Smith    MatSORType - What type of (S)SOR to perform
1579bb1eb677SSatish Balay 
15802ef1f0ffSBarry Smith    Values:
15812ef1f0ffSBarry Smith +  `SOR_FORWARD_SWEEP`         - do a sweep from the first row of the matrix to the last
15822ef1f0ffSBarry Smith .  `SOR_BACKWARD_SWEEP`        - do a sweep from the last row to the first
15832ef1f0ffSBarry Smith .  `SOR_SYMMETRIC_SWEEP`       - do a sweep from the first row to the last and then back to the first
1584af27ebaaSBarry Smith .  `SOR_LOCAL_FORWARD_SWEEP`   - each MPI process does its own forward sweep with no communication
1585af27ebaaSBarry Smith .  `SOR_LOCAL_BACKWARD_SWEEP`  - each MPI process does its own backward sweep with no communication
1586af27ebaaSBarry Smith .  `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI process does its own symmetric sweep with no communication
15872ef1f0ffSBarry Smith .  `SOR_ZERO_INITIAL_GUESS`    - indicates the initial solution is zero so the sweep can avoid unneeded computation
15882ef1f0ffSBarry Smith .  `SOR_EISENSTAT`             - apply the Eisentat application of SOR, see `PCEISENSTAT`
15892ef1f0ffSBarry Smith .  `SOR_APPLY_UPPER`           - multiply by the upper triangular portion of the matrix
15902ef1f0ffSBarry Smith -  `SOR_APPLY_LOWER`           - multiply by the lower triangular portion of the matrix
15912ef1f0ffSBarry Smith 
1592d91e6319SBarry Smith    Level: beginner
1593d91e6319SBarry Smith 
15942ef1f0ffSBarry Smith    Note:
15952ef1f0ffSBarry Smith    These may be bitwise ORd together
1596d9274352SBarry Smith 
15972ef1f0ffSBarry Smith    Developer Note:
15982ef1f0ffSBarry Smith    Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below
1599d91e6319SBarry Smith 
16001cc06b55SBarry Smith .seealso: [](ch_matrices), `MatSOR()`
1601d91e6319SBarry Smith E*/
16029371c9d4SSatish Balay typedef enum {
16039371c9d4SSatish Balay   SOR_FORWARD_SWEEP         = 1,
16049371c9d4SSatish Balay   SOR_BACKWARD_SWEEP        = 2,
16059371c9d4SSatish Balay   SOR_SYMMETRIC_SWEEP       = 3,
16069371c9d4SSatish Balay   SOR_LOCAL_FORWARD_SWEEP   = 4,
16079371c9d4SSatish Balay   SOR_LOCAL_BACKWARD_SWEEP  = 8,
16089371c9d4SSatish Balay   SOR_LOCAL_SYMMETRIC_SWEEP = 12,
16099371c9d4SSatish Balay   SOR_ZERO_INITIAL_GUESS    = 16,
16109371c9d4SSatish Balay   SOR_EISENSTAT             = 32,
16119371c9d4SSatish Balay   SOR_APPLY_UPPER           = 64,
16129371c9d4SSatish Balay   SOR_APPLY_LOWER           = 128
16139371c9d4SSatish Balay } MatSORType;
1614014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
16158ed539a5SBarry Smith 
16167086a01eSPeter Brune /*S
16177086a01eSPeter Brune    MatColoring - Object for managing the coloring of matrices.
16187086a01eSPeter Brune 
16197086a01eSPeter Brune    Level: beginner
16207086a01eSPeter Brune 
1621ec5066bdSBarry Smith    Notes:
162287497f52SBarry Smith    Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
162387497f52SBarry Smith    matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors).
1624ec5066bdSBarry Smith 
162587497f52SBarry Smith    Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This
16262ef1f0ffSBarry Smith    same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices.
1627ec5066bdSBarry Smith 
16281cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`,
16292ef1f0ffSBarry Smith           `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`,
16302ef1f0ffSBarry Smith           `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen`
16317086a01eSPeter Brune S*/
1632d4db15c4SBarry Smith typedef struct _p_MatColoring *MatColoring;
1633d4db15c4SBarry Smith 
1634d4db15c4SBarry Smith /*J
1635d4db15c4SBarry Smith    MatColoringType - String with the name of a PETSc matrix coloring
1636d9274352SBarry Smith 
1637d9274352SBarry Smith    Level: beginner
1638d9274352SBarry Smith 
16391cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring`
164076bdecfbSBarry Smith J*/
164119fd82e9SBarry Smith typedef const char *MatColoringType;
16425567d71aSPeter Brune #define MATCOLORINGJP      "jp"
1643b9acb617SPeter Brune #define MATCOLORINGPOWER   "power"
16442692d6eeSBarry Smith #define MATCOLORINGNATURAL "natural"
16452692d6eeSBarry Smith #define MATCOLORINGSL      "sl"
16462692d6eeSBarry Smith #define MATCOLORINGLF      "lf"
16472692d6eeSBarry Smith #define MATCOLORINGID      "id"
16488121bdceSPeter Brune #define MATCOLORINGGREEDY  "greedy"
1649b12f92e5SBarry Smith 
16508ac6da0aSPeter Brune /*E
16512ef1f0ffSBarry Smith    MatColoringWeightType - Type of weight scheme used for the coloring algorithm
16528ac6da0aSPeter Brune 
16532ef1f0ffSBarry Smith    Values:
165487497f52SBarry Smith +  `MAT_COLORING_RANDOM`  - Random weights
165587497f52SBarry Smith .  `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering.
165687497f52SBarry Smith -  `MAT_COLORING_LF`      - Last-first weighting.
16578ac6da0aSPeter Brune 
16588ac6da0aSPeter Brune     Level: intermediate
16598ac6da0aSPeter Brune 
16601cc06b55SBarry Smith .seealso: [](ch_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()`
16618ac6da0aSPeter Brune E*/
16629371c9d4SSatish Balay typedef enum {
16639371c9d4SSatish Balay   MAT_COLORING_WEIGHT_RANDOM,
16649371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LEXICAL,
16659371c9d4SSatish Balay   MAT_COLORING_WEIGHT_LF,
16669371c9d4SSatish Balay   MAT_COLORING_WEIGHT_SL
16679371c9d4SSatish Balay } MatColoringWeightType;
16688ac6da0aSPeter Brune 
1669335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *);
1670d7f2a307SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *);
1671335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *);
1672335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer);
1673335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType);
1674335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring);
1675335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt);
1676335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *);
1677335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt);
1678335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *);
1679335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *);
1680335efc43SPeter Brune PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring));
1681014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *);
16828ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType);
1683c29971fcSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *);
16848ac6da0aSPeter Brune PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm);
1685bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring);
1686edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatColoringTest()", ) static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring)
1687d71ae5a4SJacob Faibussowitsch {
16889371c9d4SSatish Balay   return MatColoringTest(matcoloring, iscoloring);
16899371c9d4SSatish Balay }
1690bc76d17bSHong Zhang PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring);
1691639f9d9dSBarry Smith 
1692d9274352SBarry Smith /*S
169387497f52SBarry Smith    MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring
1694639f9d9dSBarry Smith 
1695d9274352SBarry Smith    Level: beginner
1696d9274352SBarry Smith 
1697ec5066bdSBarry Smith    Notes:
169887497f52SBarry Smith    This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()`
1699ec5066bdSBarry Smith 
17002ef1f0ffSBarry Smith    The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object
17012ef1f0ffSBarry Smith 
17021cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()`
1703d9274352SBarry Smith S*/
1704e2a1c21fSSatish Balay typedef struct _p_MatFDColoring *MatFDColoring;
1705639f9d9dSBarry Smith 
1706014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *);
1707014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *);
1708014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer);
1709014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *);
1710014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **);
1711014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal);
1712014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring);
1713d1e9a80fSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *);
1714014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec);
1715edaa7c33SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]);
1716f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring);
1717f86b9fbaSHong Zhang PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt);
1718bdaf1daeSBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *);
1719b1683b59SHong Zhang 
1720b1683b59SHong Zhang /*S
1721af27ebaaSBarry Smith    MatTransposeColoring - Object for computing a sparse matrix product $C = A*B^T$ via coloring
1722b1683b59SHong Zhang 
17232ef1f0ffSBarry Smith    Level: developer
1724b1683b59SHong Zhang 
17251cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()`
1726b1683b59SHong Zhang S*/
1727b9af6bddSHong Zhang typedef struct _p_MatTransposeColoring *MatTransposeColoring;
1728b1683b59SHong Zhang 
1729014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *);
1730014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat);
1731014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat);
1732014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *);
1733b1683b59SHong Zhang 
1734d9274352SBarry Smith /*S
1735d9274352SBarry Smith    MatPartitioning - Object for managing the partitioning of a matrix or graph
1736d9274352SBarry Smith 
1737d9274352SBarry Smith    Level: beginner
1738d9274352SBarry Smith 
173987497f52SBarry Smith    Note:
174087497f52SBarry Smith    There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations
174187497f52SBarry Smith    via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`)
1742ec5066bdSBarry Smith 
1743b5e6e808SPierre Jolivet    Developer Note:
17442ef1f0ffSBarry Smith    It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed
1745ec5066bdSBarry Smith 
17461cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`,
17472ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
1748d9274352SBarry Smith S*/
174991e9ee9fSBarry Smith typedef struct _p_MatPartitioning *MatPartitioning;
1750d9274352SBarry Smith 
175176bdecfbSBarry Smith /*J
17528f6c3df8SBarry Smith     MatPartitioningType - String with the name of a PETSc matrix partitioning
1753d9274352SBarry Smith 
1754d9274352SBarry Smith    Level: beginner
17550d04baf8SBarry Smith dm
17561cc06b55SBarry Smith .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`,
17572ef1f0ffSBarry Smith           `MatCoarsenType`, `MatCoarsenType`
175876bdecfbSBarry Smith J*/
175919fd82e9SBarry Smith typedef const char *MatPartitioningType;
17602692d6eeSBarry Smith #define MATPARTITIONINGCURRENT  "current"
1761aa1e27eaSFande Kong #define MATPARTITIONINGAVERAGE  "average"
17622692d6eeSBarry Smith #define MATPARTITIONINGSQUARE   "square"
17632692d6eeSBarry Smith #define MATPARTITIONINGPARMETIS "parmetis"
17642692d6eeSBarry Smith #define MATPARTITIONINGCHACO    "chaco"
17652692d6eeSBarry Smith #define MATPARTITIONINGPARTY    "party"
176650d91057SBarry Smith #define MATPARTITIONINGPTSCOTCH "ptscotch"
176788d2ac2bSFande Kong #define MATPARTITIONINGHIERARCH "hierarch"
176871306c60Sjroman 
1769014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *);
177019fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType);
1771014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt);
1772014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat);
1773252a1336SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt);
1774014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]);
1775014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]);
1776ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool);
1777ebf67979SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *);
1778014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *);
1779fdd1c351SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *);
1780668144dbSFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS);
1781f3ad2dabSStefano Zampini PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *);
1782014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *);
1783bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning));
1784014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer);
1785fe2efc57SMark PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]);
1786014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning);
178719fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *);
1788ca161407SBarry Smith 
178927538973SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part);
1790014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning);
1791014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *);
17920752156aSBarry Smith 
17939371c9d4SSatish Balay typedef enum {
17949371c9d4SSatish Balay   MP_CHACO_MULTILEVEL = 1,
17959371c9d4SSatish Balay   MP_CHACO_SPECTRAL   = 2,
17969371c9d4SSatish Balay   MP_CHACO_LINEAR     = 4,
17979371c9d4SSatish Balay   MP_CHACO_RANDOM     = 5,
17989371c9d4SSatish Balay   MP_CHACO_SCATTERED  = 6
17999371c9d4SSatish Balay } MPChacoGlobalType;
18006a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoGlobalTypes[];
18019371c9d4SSatish Balay typedef enum {
18029371c9d4SSatish Balay   MP_CHACO_KERNIGHAN = 1,
18039371c9d4SSatish Balay   MP_CHACO_NONE      = 2
18049371c9d4SSatish Balay } MPChacoLocalType;
18056a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoLocalTypes[];
18069371c9d4SSatish Balay typedef enum {
18079371c9d4SSatish Balay   MP_CHACO_LANCZOS = 0,
18089371c9d4SSatish Balay   MP_CHACO_RQI     = 1
18099371c9d4SSatish Balay } MPChacoEigenType;
18106a6fc655SJed Brown PETSC_EXTERN const char *const MPChacoEigenTypes[];
1811b6956c12SJose Roman 
1812014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType);
1813014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *);
1814014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType);
1815014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *);
1816014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal);
1817014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType);
1818014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *);
1819014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal);
1820014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *);
1821014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt);
1822014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *);
182371306c60Sjroman 
182471306c60Sjroman #define MP_PARTY_OPT "opt"
182571306c60Sjroman #define MP_PARTY_LIN "lin"
182671306c60Sjroman #define MP_PARTY_SCA "sca"
182771306c60Sjroman #define MP_PARTY_RAN "ran"
182871306c60Sjroman #define MP_PARTY_GBF "gbf"
182971306c60Sjroman #define MP_PARTY_GCF "gcf"
183071306c60Sjroman #define MP_PARTY_BUB "bub"
183171306c60Sjroman #define MP_PARTY_DEF "def"
1832014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *);
183371306c60Sjroman #define MP_PARTY_HELPFUL_SETS  "hs"
183471306c60Sjroman #define MP_PARTY_KERNIGHAN_LIN "kl"
183571306c60Sjroman #define MP_PARTY_NONE          "no"
1836014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *);
1837014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal);
1838014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool);
1839014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool);
184071306c60Sjroman 
18419371c9d4SSatish Balay typedef enum {
18429371c9d4SSatish Balay   MP_PTSCOTCH_DEFAULT,
18439371c9d4SSatish Balay   MP_PTSCOTCH_QUALITY,
18449371c9d4SSatish Balay   MP_PTSCOTCH_SPEED,
18459371c9d4SSatish Balay   MP_PTSCOTCH_BALANCE,
18469371c9d4SSatish Balay   MP_PTSCOTCH_SAFETY,
18479371c9d4SSatish Balay   MP_PTSCOTCH_SCALABILITY
18489371c9d4SSatish Balay } MPPTScotchStrategyType;
18496a6fc655SJed Brown PETSC_EXTERN const char *const MPPTScotchStrategyTypes[];
1850e0f1cffaSJose Roman 
1851014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal);
1852014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *);
1853014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType);
1854014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *);
185571306c60Sjroman 
1856b43b03e9SMark F. Adams /*
18576294fa2bSFande Kong  * hierarchical partitioning
18586294fa2bSFande Kong  */
18594e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *);
18604e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *);
18614e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt);
18624e713f55SFande Kong PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt);
18636294fa2bSFande Kong 
1864014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *);
1865591294e4SBarry Smith 
18660752156aSBarry Smith /*
1867c786d857SStefano Zampini     If you add entries here you must also add them to src/mat/f90-mod/petscmat.h
1868c786d857SStefano Zampini     If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx
1869d4fbbf0eSBarry Smith */
18709371c9d4SSatish Balay typedef enum {
18719371c9d4SSatish Balay   MATOP_SET_VALUES               = 0,
18721c1c02c0SLois Curfman McInnes   MATOP_GET_ROW                  = 1,
18731c1c02c0SLois Curfman McInnes   MATOP_RESTORE_ROW              = 2,
18741c1c02c0SLois Curfman McInnes   MATOP_MULT                     = 3,
18751c1c02c0SLois Curfman McInnes   MATOP_MULT_ADD                 = 4,
18767c922b88SBarry Smith   MATOP_MULT_TRANSPOSE           = 5,
18777c922b88SBarry Smith   MATOP_MULT_TRANSPOSE_ADD       = 6,
18781c1c02c0SLois Curfman McInnes   MATOP_SOLVE                    = 7,
18791c1c02c0SLois Curfman McInnes   MATOP_SOLVE_ADD                = 8,
18807c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE          = 9,
18817c922b88SBarry Smith   MATOP_SOLVE_TRANSPOSE_ADD      = 10,
18821c1c02c0SLois Curfman McInnes   MATOP_LUFACTOR                 = 11,
18831c1c02c0SLois Curfman McInnes   MATOP_CHOLESKYFACTOR           = 12,
1884a714c06dSBarry Smith   MATOP_SOR                      = 13,
18851c1c02c0SLois Curfman McInnes   MATOP_TRANSPOSE                = 14,
18861c1c02c0SLois Curfman McInnes   MATOP_GETINFO                  = 15,
18871c1c02c0SLois Curfman McInnes   MATOP_EQUAL                    = 16,
18881c1c02c0SLois Curfman McInnes   MATOP_GET_DIAGONAL             = 17,
18891c1c02c0SLois Curfman McInnes   MATOP_DIAGONAL_SCALE           = 18,
18901c1c02c0SLois Curfman McInnes   MATOP_NORM                     = 19,
18911c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_BEGIN           = 20,
18921c1c02c0SLois Curfman McInnes   MATOP_ASSEMBLY_END             = 21,
1893d519adbfSMatthew Knepley   MATOP_SET_OPTION               = 22,
1894d519adbfSMatthew Knepley   MATOP_ZERO_ENTRIES             = 23,
1895d519adbfSMatthew Knepley   MATOP_ZERO_ROWS                = 24,
1896d519adbfSMatthew Knepley   MATOP_LUFACTOR_SYMBOLIC        = 25,
1897d519adbfSMatthew Knepley   MATOP_LUFACTOR_NUMERIC         = 26,
1898d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27,
1899d519adbfSMatthew Knepley   MATOP_CHOLESKY_FACTOR_NUMERIC  = 28,
1900e5f2d425SStefano Zampini   MATOP_SETUP                    = 29,
1901d519adbfSMatthew Knepley   MATOP_ILUFACTOR_SYMBOLIC       = 30,
1902d519adbfSMatthew Knepley   MATOP_ICCFACTOR_SYMBOLIC       = 31,
1903a5b7ff6bSBarry Smith   MATOP_GET_DIAGONAL_BLOCK       = 32,
1904e5f2d425SStefano Zampini   MATOP_SET_INF                  = 33,
1905d519adbfSMatthew Knepley   MATOP_DUPLICATE                = 34,
1906d519adbfSMatthew Knepley   MATOP_FORWARD_SOLVE            = 35,
1907d519adbfSMatthew Knepley   MATOP_BACKWARD_SOLVE           = 36,
1908d519adbfSMatthew Knepley   MATOP_ILUFACTOR                = 37,
1909d519adbfSMatthew Knepley   MATOP_ICCFACTOR                = 38,
1910d519adbfSMatthew Knepley   MATOP_AXPY                     = 39,
19117dae84e0SHong Zhang   MATOP_CREATE_SUBMATRICES       = 40,
1912d519adbfSMatthew Knepley   MATOP_INCREASE_OVERLAP         = 41,
1913d519adbfSMatthew Knepley   MATOP_GET_VALUES               = 42,
1914d519adbfSMatthew Knepley   MATOP_COPY                     = 43,
1915d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX              = 44,
1916d519adbfSMatthew Knepley   MATOP_SCALE                    = 45,
1917d519adbfSMatthew Knepley   MATOP_SHIFT                    = 46,
191835153367SBarry Smith   MATOP_DIAGONAL_SET             = 47,
19199d39f69dSJed Brown   MATOP_ZERO_ROWS_COLUMNS        = 48,
19209d39f69dSJed Brown   MATOP_SET_RANDOM               = 49,
1921d519adbfSMatthew Knepley   MATOP_GET_ROW_IJ               = 50,
1922d519adbfSMatthew Knepley   MATOP_RESTORE_ROW_IJ           = 51,
1923d519adbfSMatthew Knepley   MATOP_GET_COLUMN_IJ            = 52,
1924d519adbfSMatthew Knepley   MATOP_RESTORE_COLUMN_IJ        = 53,
1925d519adbfSMatthew Knepley   MATOP_FDCOLORING_CREATE        = 54,
1926d519adbfSMatthew Knepley   MATOP_COLORING_PATCH           = 55,
1927d519adbfSMatthew Knepley   MATOP_SET_UNFACTORED           = 56,
1928d519adbfSMatthew Knepley   MATOP_PERMUTE                  = 57,
1929d519adbfSMatthew Knepley   MATOP_SET_VALUES_BLOCKED       = 58,
19307dae84e0SHong Zhang   MATOP_CREATE_SUBMATRIX         = 59,
1931d519adbfSMatthew Knepley   MATOP_DESTROY                  = 60,
1932d519adbfSMatthew Knepley   MATOP_VIEW                     = 61,
1933d519adbfSMatthew Knepley   MATOP_CONVERT_FROM             = 62,
1934e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_63=63 */
19357bab7c10SHong Zhang   MATOP_MATMAT_MULT_SYMBOLIC    = 64,
19367bab7c10SHong Zhang   MATOP_MATMAT_MULT_NUMERIC     = 65,
1937d519adbfSMatthew Knepley   MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66,
1938d519adbfSMatthew Knepley   MATOP_SET_VALUES_LOCAL        = 67,
1939d519adbfSMatthew Knepley   MATOP_ZERO_ROWS_LOCAL         = 68,
1940d519adbfSMatthew Knepley   MATOP_GET_ROW_MAX_ABS         = 69,
1941d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN_ABS         = 70,
1942d519adbfSMatthew Knepley   MATOP_CONVERT                 = 71,
1943e5f2d425SStefano Zampini   MATOP_HAS_OPERATION           = 72,
19449d39f69dSJed Brown   /* MATOP_PLACEHOLDER_73=73, */
1945d519adbfSMatthew Knepley   MATOP_SET_VALUES_ADIFOR = 74,
1946d519adbfSMatthew Knepley   MATOP_FD_COLORING_APPLY = 75,
1947d519adbfSMatthew Knepley   MATOP_SET_FROM_OPTIONS  = 76,
1948e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_77=77, */
1949e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_78=78, */
19509d39f69dSJed Brown   MATOP_FIND_ZERO_DIAGONALS       = 79,
1951d519adbfSMatthew Knepley   MATOP_MULT_MULTIPLE             = 80,
1952d519adbfSMatthew Knepley   MATOP_SOLVE_MULTIPLE            = 81,
1953d519adbfSMatthew Knepley   MATOP_GET_INERTIA               = 82,
1954d519adbfSMatthew Knepley   MATOP_LOAD                      = 83,
1955d519adbfSMatthew Knepley   MATOP_IS_SYMMETRIC              = 84,
1956d519adbfSMatthew Knepley   MATOP_IS_HERMITIAN              = 85,
1957d519adbfSMatthew Knepley   MATOP_IS_STRUCTURALLY_SYMMETRIC = 86,
1958820469bcSHong Zhang   MATOP_SET_VALUES_BLOCKEDLOCAL   = 87,
1959b41ce5d5SBarry Smith   MATOP_CREATE_VECS               = 88,
1960e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_89=89, */
1961d519adbfSMatthew Knepley   MATOP_MAT_MULT_SYMBOLIC = 90,
1962d519adbfSMatthew Knepley   MATOP_MAT_MULT_NUMERIC  = 91,
1963e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_92=92, */
1964d519adbfSMatthew Knepley   MATOP_PTAP_SYMBOLIC = 93,
1965d519adbfSMatthew Knepley   MATOP_PTAP_NUMERIC  = 94,
1966e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_95=95, */
1967bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96,
1968bda6c4cbSBarry Smith   MATOP_MAT_TRANSPOSE_MULT_NUMER = 97,
1969e5f2d425SStefano Zampini   MATOP_BIND_TO_CPU              = 98,
19707a3c3d58SStefano Zampini   MATOP_PRODUCTSETFROMOPTIONS    = 99,
19717a3c3d58SStefano Zampini   MATOP_PRODUCTSYMBOLIC          = 100,
19727a3c3d58SStefano Zampini   MATOP_PRODUCTNUMERIC           = 101,
1973d519adbfSMatthew Knepley   MATOP_CONJUGATE                = 102,
1974e5f2d425SStefano Zampini   MATOP_VIEW_NATIVE              = 103,
1975d519adbfSMatthew Knepley   MATOP_SET_VALUES_ROW           = 104,
1976d519adbfSMatthew Knepley   MATOP_REAL_PART                = 105,
1977bda6c4cbSBarry Smith   MATOP_IMAGINARY_PART           = 106,
1978bda6c4cbSBarry Smith   MATOP_GET_ROW_UPPER_TRIANGULAR = 107,
1979bda6c4cbSBarry Smith   MATOP_RESTORE_ROW_UPPER_TRIANG = 108,
1980bda6c4cbSBarry Smith   MATOP_MAT_SOLVE                = 109,
198129eadf9eSStefano Zampini   MATOP_MAT_SOLVE_TRANSPOSE      = 110,
1982d519adbfSMatthew Knepley   MATOP_GET_ROW_MIN              = 111,
19830e8d04f7SBarry Smith   MATOP_GET_COLUMN_VECTOR        = 112,
1984d519adbfSMatthew Knepley   MATOP_MISSING_DIAGONAL         = 113,
19850e8d04f7SBarry Smith   MATOP_GET_SEQ_NONZERO_STRUCTUR = 114,
198689c6957cSBarry Smith   MATOP_CREATE                   = 115,
198789c6957cSBarry Smith   MATOP_GET_GHOSTS               = 116,
19880e8d04f7SBarry Smith   MATOP_GET_LOCAL_SUB_MATRIX     = 117,
19890e8d04f7SBarry Smith   MATOP_RESTORE_LOCALSUB_MATRIX  = 118,
1990eeffb40dSHong Zhang   MATOP_MULT_DIAGONAL_BLOCK      = 119,
19910e8d04f7SBarry Smith   MATOP_HERMITIAN_TRANSPOSE      = 120,
19920e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANSPOSE = 121,
19930e8d04f7SBarry Smith   MATOP_MULT_HERMITIAN_TRANS_ADD = 122,
19940e8d04f7SBarry Smith   MATOP_GET_MULTI_PROC_BLOCK     = 123,
19959d39f69dSJed Brown   MATOP_FIND_NONZERO_ROWS        = 124,
19960e8d04f7SBarry Smith   MATOP_GET_COLUMN_NORMS         = 125,
19979d39f69dSJed Brown   MATOP_INVERT_BLOCK_DIAGONAL    = 126,
1998e5f2d425SStefano Zampini   MATOP_INVERT_VBLOCK_DIAGONAL   = 127,
1999b41ce5d5SBarry Smith   MATOP_CREATE_SUB_MATRICES_MPI  = 128,
20002b8ad9a3SHong Zhang   MATOP_SET_VALUES_BATCH         = 129,
2001e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_130=130, */
20020e8d04f7SBarry Smith   MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131,
2003e9b602ebSSatish Balay   MATOP_TRANSPOSE_MAT_MULT_NUMER = 132,
20040e8d04f7SBarry Smith   MATOP_TRANSPOSE_COLORING_CREAT = 133,
20050e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_SPT = 134,
20060e8d04f7SBarry Smith   MATOP_TRANS_COLORING_APPLY_DEN = 135,
2007e5f2d425SStefano Zampini   /* MATOP_PLACEHOLDER_136=136, */
20080e8d04f7SBarry Smith   MATOP_RART_SYMBOLIC         = 137,
20090e8d04f7SBarry Smith   MATOP_RART_NUMERIC          = 138,
2010e09a3074SHong Zhang   MATOP_SET_BLOCK_SIZES       = 139,
2011f9426fe0SMark Adams   MATOP_AYPX                  = 140,
20121919a2e2SJed Brown   MATOP_RESIDUAL              = 141,
20139c8f2541SHong Zhang   MATOP_FDCOLORING_SETUP      = 142,
2014e5f2d425SStefano Zampini   MATOP_FIND_OFFBLOCK_ENTRIES = 143,
20152d033e1fSHong Zhang   MATOP_MPICONCATENATESEQ     = 144,
2016bb01b7b0SPatrick Sanan   MATOP_DESTROYSUBMATRICES    = 145,
2017e265f6d6SPatrick Sanan   MATOP_TRANSPOSE_SOLVE       = 146,
2018e265f6d6SPatrick Sanan   MATOP_GET_VALUES_LOCAL      = 147
2019fae171e0SBarry Smith } MatOperation;
20200c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void));
2021976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void));
2022976e8c5aSLisandro Dalcin PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *);
202394342113SStefano Zampini PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *);
2024edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatProductClear()", ) static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A)
2025d71ae5a4SJacob Faibussowitsch {
20269371c9d4SSatish Balay   return MatProductClear(A);
20279371c9d4SSatish Balay }
2028014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void));
2029014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void));
2030014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *);
2031800f99ffSJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *));
2032db77db73SJeremy L Thompson PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType);
2033f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
2034f3b1f45cSBarry Smith PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
20350c0fd78eSBarry Smith PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat);
2036b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType);
2037b77ba244SStefano Zampini PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *);
2038112a2221SBarry Smith 
203990ace30eSBarry Smith /*
204090ace30eSBarry Smith    Codes for matrices stored on disk. By default they are
204190ace30eSBarry Smith    stored in a universal format. By changing the format with
20426a9046bcSBarry Smith    PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will
204390ace30eSBarry Smith    be stored in a way natural for the matrix, for example dense matrices
204490ace30eSBarry Smith    would be stored as dense. Matrices stored this way may only be
2045f4403165SShri Abhyankar    read into matrices of the same type.
204690ace30eSBarry Smith */
204790ace30eSBarry Smith #define MATRIX_BINARY_FORMAT_DENSE -1
204890ace30eSBarry Smith 
2049014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal);
205075d48cdbSStefano Zampini 
20518546b261SStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType);
205275d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
205375d48cdbSStefano Zampini PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool);
2054f03112d0SStefano Zampini PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool);
2055014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *);
20563b3b1effSJed Brown PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *);
2057014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat);
2058e432b41dSStefano Zampini PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
2059edd03b47SJacob Faibussowitsch PETSC_EXTERN PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatConvert()", ) PetscErrorCode MatISGetMPIXAIJ(Mat, MatReuse, Mat *);
20601f4e1ec7SBarry Smith 
2061d9274352SBarry Smith /*S
2062d9274352SBarry Smith    MatNullSpace - Object that removes a null space from a vector, i.e.
2063cb6b9846SMatthew Knepley                   orthogonalizes the vector to a subspace
2064d9274352SBarry Smith 
2065f7a9e4ceSBarry Smith    Level: advanced
2066d9274352SBarry Smith 
20671cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()`
2068d9274352SBarry Smith S*/
206974637425SBarry Smith typedef struct _p_MatNullSpace *MatNullSpace;
2070d9274352SBarry Smith 
2071014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *);
2072014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *);
2073014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *);
2074d0195637SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec);
2075014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *);
20765fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *);
20775fa7ec2dSBarry Smith PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace);
2078014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace);
2079014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace);
2080014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *);
2081014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *);
2082014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer);
2083014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **);
2084014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *);
208574637425SBarry Smith 
2086014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS);
2087014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal);
2088014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *);
20893f1d51d7SBarry Smith 
2090014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *);
2091014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *);
2092014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *);
2093c4f061fbSSatish Balay 
20940bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *);
20950bacdadaSStefano Zampini PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *);
20960bacdadaSStefano Zampini 
2097edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperator()", ) static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B)
2098d71ae5a4SJacob Faibussowitsch {
2099f22e26b7SPierre Jolivet   return MatComputeOperator(A, PETSC_NULLPTR, B);
21009371c9d4SSatish Balay }
2101edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperatorTranspose()", ) static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B)
2102d71ae5a4SJacob Faibussowitsch {
2103f22e26b7SPierre Jolivet   return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B);
21049371c9d4SSatish Balay }
2105b0a32e0cSBarry Smith 
210649bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *);
210749bd79ccSDebojyoti Ghosh PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *);
2108a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **);
2109a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2110a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **);
2111a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **);
2112a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **);
2113a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2114a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **);
2115a5b5c723SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **);
2116dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat);
2117dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]);
2118dbb4b592SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]);
2119910cf402Sprj- PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *);
212049bd79ccSDebojyoti Ghosh 
2121014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec);
212204f1ad80SBarry Smith 
21234bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDInitializePackage(void);
21244bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatMFFDFinalizePackage(void);
21254bf303faSJacob Faibussowitsch 
2126014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2127014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec);
2128014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *);
2129014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *));
2130014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec));
2131014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt);
2132014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat);
2133014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal);
2134014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt);
2135014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *);
2136014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]);
2137014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *);
2138014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *);
2139e884886fSBarry Smith 
21406370053bSBarry Smith /*S
21416370053bSBarry Smith     MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free
21426370053bSBarry Smith               Jacobian vector products
2143e884886fSBarry Smith 
21442ef1f0ffSBarry Smith     Level: developer
21452ef1f0ffSBarry Smith 
214695452b02SPatrick Sanan     Notes:
214787497f52SBarry Smith     `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure
21486370053bSBarry Smith 
21492ef1f0ffSBarry Smith      MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure
21506370053bSBarry Smith 
21512ef1f0ffSBarry Smith     This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator`
21526370053bSBarry Smith 
21531cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`,
21542ef1f0ffSBarry Smith           `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator`
21556370053bSBarry Smith S*/
2156e884886fSBarry Smith typedef struct _p_MatMFFD *MatMFFD;
2157e884886fSBarry Smith 
215876bdecfbSBarry Smith /*J
21592ef1f0ffSBarry Smith    MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function
2160e884886fSBarry Smith 
216116a05f60SBarry Smith    Values:
2162af27ebaaSBarry Smith +   `MATMFFD_DS` - an algorithm described by Dennis and Schnabel {cite}`dennis:83`
2163af27ebaaSBarry Smith -   `MATMFFD_WP` - the Walker-Pernice {cite}`pw98` strategy.
216416a05f60SBarry Smith 
2165e884886fSBarry Smith    Level: beginner
2166e884886fSBarry Smith 
21671cc06b55SBarry Smith .seealso: [](ch_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()`
216876bdecfbSBarry Smith J*/
216919fd82e9SBarry Smith typedef const char *MatMFFDType;
2170e884886fSBarry Smith #define MATMFFD_DS "ds"
2171e884886fSBarry Smith #define MATMFFD_WP "wp"
2172e884886fSBarry Smith 
217319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType);
2174bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD));
2175e884886fSBarry Smith 
2176014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal);
2177014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool);
2178e884886fSBarry Smith 
217961ab5df0SBarry Smith PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType);
218061ab5df0SBarry Smith 
2181014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *);
2182014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *);
21837dbadf16SMatthew Knepley 
218453022affSStefano Zampini #ifdef PETSC_HAVE_H2OPUS
21858434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscScalar(MatH2OpusKernelFn)(PetscInt, PetscReal[], PetscReal[], void *);
21868434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatH2OpusKernelFn *MatH2OpusKernel;
21878434afd1SBarry Smith PETSC_EXTERN PetscErrorCode                     MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernelFn *, void *, PetscReal, PetscInt, PetscInt, Mat *);
218853022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *);
218953022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal);
219053022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusOrthogonalize(Mat);
219153022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusCompress(Mat, PetscReal);
219253022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusSetNativeMult(Mat, PetscBool);
219353022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusGetNativeMult(Mat, PetscBool *);
219453022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusGetIndexMap(Mat, IS *);
219553022affSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *);
2196300d917bSStefano Zampini PETSC_EXTERN PetscErrorCode                     MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar);
2197a0d2e7d8SStefano Zampini #endif
2198a0d2e7d8SStefano Zampini 
2199c7a4214aSPierre Jolivet #ifdef PETSC_HAVE_HTOOL
22008434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef PetscErrorCode(MatHtoolKernelFn)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *);
22018434afd1SBarry Smith PETSC_EXTERN_TYPEDEF typedef MatHtoolKernelFn *MatHtoolKernel;
22028434afd1SBarry Smith PETSC_EXTERN PetscErrorCode                    MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernelFn *, void *, Mat *);
22038434afd1SBarry Smith PETSC_EXTERN PetscErrorCode                    MatHtoolSetKernel(Mat, MatHtoolKernelFn *, void *);
220498e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode                    MatHtoolGetPermutationSource(Mat, IS *);
220598e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode                    MatHtoolGetPermutationTarget(Mat, IS *);
220698e73e17SPierre Jolivet PETSC_EXTERN PetscErrorCode                    MatHtoolUsePermutation(Mat, PetscBool);
22072ef1f0ffSBarry Smith 
2208c7a4214aSPierre Jolivet /*E
220987497f52SBarry Smith    MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL`
2210c7a4214aSPierre Jolivet 
2211c7a4214aSPierre Jolivet    Values:
221287497f52SBarry Smith +  `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation
221387497f52SBarry Smith .  `MAT_HTOOL_COMPRESSOR_FULL_ACA`                 - full adaptive cross approximation
221487497f52SBarry Smith -  `MAT_HTOOL_COMPRESSOR_SVD`                      - singular value decomposition
2215c7a4214aSPierre Jolivet 
221616a05f60SBarry Smith    Level: intermediate
221716a05f60SBarry Smith 
22181cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType`
2219c7a4214aSPierre Jolivet E*/
22209371c9d4SSatish Balay typedef enum {
22219371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA,
22229371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_FULL_ACA,
22239371c9d4SSatish Balay   MAT_HTOOL_COMPRESSOR_SVD
22249371c9d4SSatish Balay } MatHtoolCompressorType;
22252ef1f0ffSBarry Smith 
222698e73e17SPierre Jolivet /*E
222787497f52SBarry Smith    MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL`
222898e73e17SPierre Jolivet 
222998e73e17SPierre Jolivet    Values:
223087497f52SBarry Smith +  `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default)    - axis computed via principle component analysis, split uniformly
223187497f52SBarry Smith .  `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC`            - axis computed via principle component analysis, split barycentrically
223287497f52SBarry Smith .  `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR`   - axis along the largest extent of the bounding box, split uniformly
223387497f52SBarry Smith -  `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically
223498e73e17SPierre Jolivet 
223516a05f60SBarry Smith    Level: intermediate
223616a05f60SBarry Smith 
22372ef1f0ffSBarry Smith    Note:
22382ef1f0ffSBarry Smith    Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types
223998e73e17SPierre Jolivet 
22401cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType`
224198e73e17SPierre Jolivet E*/
22429371c9d4SSatish Balay typedef enum {
22439371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_REGULAR,
22449371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC,
22459371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR,
22469371c9d4SSatish Balay   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC
22479371c9d4SSatish Balay } MatHtoolClusteringType;
2248c7a4214aSPierre Jolivet #endif
2249c7a4214aSPierre Jolivet 
225097969023SHong Zhang #ifdef PETSC_HAVE_MUMPS
2251014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt);
2252bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *);
2253b9e9ea26SSatish Balay PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal);
2254bc6112feSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *);
2255bc6112feSHong Zhang 
2256ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *);
2257ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *);
2258ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *);
2259ca810319SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *);
22605c0bae8cSAshish Patel PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **);
226189a9c03aSHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat);
22620e6b8875SHong Zhang PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat);
226397969023SHong Zhang #endif
226423a5497aSJed Brown 
2265b500a6b7SJose David Bermeol #ifdef PETSC_HAVE_MKL_PARDISO
2266d615f992SSatish Balay PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt);
2267b500a6b7SJose David Bermeol #endif
2268b500a6b7SJose David Bermeol 
2269d305a81bSVasiliy Kozyrev #ifdef PETSC_HAVE_MKL_CPARDISO
2270d305a81bSVasiliy Kozyrev PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt);
2271d305a81bSVasiliy Kozyrev #endif
2272d305a81bSVasiliy Kozyrev 
2273d954db57SHong Zhang #ifdef PETSC_HAVE_SUPERLU
2274014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal);
2275d954db57SHong Zhang #endif
2276d954db57SHong Zhang 
2277fb785984SHong Zhang #ifdef PETSC_HAVE_SUPERLU_DIST
2278fb785984SHong Zhang PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *);
2279fb785984SHong Zhang #endif
2280fb785984SHong Zhang 
2281575704cbSPieter Ghysels #ifdef PETSC_HAVE_STRUMPACK
2282542aee0fSPieter Ghysels /*E
228329e0a805SPieter Ghysels     MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK`
2284542aee0fSPieter Ghysels 
22852ef1f0ffSBarry Smith     Values:
22862ef1f0ffSBarry Smith +  `MAT_STRUMPACK_NATURAL`   - use the current ordering
22872ef1f0ffSBarry Smith .  `MAT_STRUMPACK_METIS`     - use MeTis to compute an ordering
22882ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PARMETIS`  - use ParMeTis to compute an ordering
22892ef1f0ffSBarry Smith .  `MAT_STRUMPACK_SCOTCH`    - use Scotch to compute an ordering
22902ef1f0ffSBarry Smith .  `MAT_STRUMPACK_PTSCOTCH`  - use parallel Scotch to compute an ordering
229129e0a805SPieter Ghysels .  `MAT_STRUMPACK_RCM`       - use an RCM ordering
229229e0a805SPieter Ghysels .  `MAT_STRUMPACK_GEOMETRIC` - use a geometric ordering (needs mesh info from user)
229329e0a805SPieter Ghysels .  `MAT_STRUMPACK_AMD`       - approximate minimum degree
229429e0a805SPieter Ghysels .  `MAT_STRUMPACK_MMD`       - multiple minimum degree
229529e0a805SPieter Ghysels .  `MAT_STRUMPACK_AND`       - approximate nested dissection
229629e0a805SPieter Ghysels .  `MAT_STRUMPACK_MLF`       - minimum local fill
229729e0a805SPieter Ghysels -  `MAT_STRUMPACK_SPECTRAL`  - spectral nested dissection
22982ef1f0ffSBarry Smith 
229916a05f60SBarry Smith     Level: intermediate
230016a05f60SBarry Smith 
23012ef1f0ffSBarry Smith     Developer Note:
23022ef1f0ffSBarry Smith     Should be called `MatSTRUMPACKReorderingType`
23032ef1f0ffSBarry Smith 
230429e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetReordering()`
2305542aee0fSPieter Ghysels E*/
23069371c9d4SSatish Balay typedef enum {
230729e0a805SPieter Ghysels   MAT_STRUMPACK_NATURAL,
230829e0a805SPieter Ghysels   MAT_STRUMPACK_METIS,
230929e0a805SPieter Ghysels   MAT_STRUMPACK_PARMETIS,
231029e0a805SPieter Ghysels   MAT_STRUMPACK_SCOTCH,
231129e0a805SPieter Ghysels   MAT_STRUMPACK_PTSCOTCH,
231229e0a805SPieter Ghysels   MAT_STRUMPACK_RCM,
231329e0a805SPieter Ghysels   MAT_STRUMPACK_GEOMETRIC,
231429e0a805SPieter Ghysels   MAT_STRUMPACK_AMD,
231529e0a805SPieter Ghysels   MAT_STRUMPACK_MMD,
231629e0a805SPieter Ghysels   MAT_STRUMPACK_AND,
231729e0a805SPieter Ghysels   MAT_STRUMPACK_MLF,
231829e0a805SPieter Ghysels   MAT_STRUMPACK_SPECTRAL
23199371c9d4SSatish Balay } MatSTRUMPACKReordering;
23202ef1f0ffSBarry Smith 
232134f43fa5SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering);
232229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetReordering(Mat, MatSTRUMPACKReordering *);
232329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricNxyz(Mat, PetscInt, PetscInt, PetscInt);
232429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricComponents(Mat, PetscInt);
232529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGeometricWidth(Mat, PetscInt);
2326575704cbSPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool);
232729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetColPerm(Mat, PetscBool *);
232829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetGPU(Mat, PetscBool);
232929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetGPU(Mat, PetscBool *);
233029e0a805SPieter Ghysels 
233129e0a805SPieter Ghysels /*E
233229e0a805SPieter Ghysels     MatSTRUMPACKCompressionType - Compression used in the approximate sparse factorization solver `MATSOLVERSTRUMPACK`
233329e0a805SPieter Ghysels 
233429e0a805SPieter Ghysels     Values:
233529e0a805SPieter Ghysels +  `MAT_STRUMPACK_COMPRESSION_TYPE_NONE`          - no compression, direct solver
233629e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_HSS`           - hierarchically semi-separable
233729e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_BLR`           - block low rank
233829e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_HODLR`         - hierarchically off-diagonal low rank (requires ButterfyPACK support, configure with --download-butterflypack)
233929e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR`     - hybrid of BLR and HODLR (requires ButterfyPACK support, configure with --download-butterflypack)
234029e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR` - hybrid of lossy (ZFP), BLR and HODLR (requires ButterfyPACK and ZFP support, configure with --download-butterflypack --download-zfp)
234129e0a805SPieter Ghysels .  `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS`      - lossless compression (requires ZFP support, configure with --download-zfp)
234229e0a805SPieter Ghysels -  `MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY`         - lossy compression (requires ZFP support, configure with --download-zfp)
234329e0a805SPieter Ghysels 
234429e0a805SPieter Ghysels     Level: intermediate
234529e0a805SPieter Ghysels 
234629e0a805SPieter Ghysels .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetCompression()`
234729e0a805SPieter Ghysels E*/
234829e0a805SPieter Ghysels typedef enum {
234929e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_NONE,
235029e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_HSS,
235129e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_BLR,
235229e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_HODLR,
235329e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_BLR_HODLR,
235429e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_ZFP_BLR_HODLR,
235529e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_LOSSLESS,
235629e0a805SPieter Ghysels   MAT_STRUMPACK_COMPRESSION_TYPE_LOSSY
235729e0a805SPieter Ghysels } MatSTRUMPACKCompressionType;
235829e0a805SPieter Ghysels 
235929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompression(Mat, MatSTRUMPACKCompressionType);
236029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompression(Mat, MatSTRUMPACKCompressionType *);
236129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompRelTol(Mat, PetscReal);
236229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompRelTol(Mat, PetscReal *);
236329e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompAbsTol(Mat, PetscReal);
236429e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompAbsTol(Mat, PetscReal *);
236529e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompMinSepSize(Mat, PetscInt);
236629e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompMinSepSize(Mat, PetscInt *);
236729e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLeafSize(Mat, PetscInt);
236829e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLeafSize(Mat, PetscInt *);
236929e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompLossyPrecision(Mat, PetscInt);
237029e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompLossyPrecision(Mat, PetscInt *);
237129e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetCompButterflyLevels(Mat, PetscInt);
237229e0a805SPieter Ghysels PETSC_EXTERN PetscErrorCode MatSTRUMPACKGetCompButterflyLevels(Mat, PetscInt *);
2373575704cbSPieter Ghysels #endif
2374575704cbSPieter Ghysels 
2375b470e4b4SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool);
23762216c58aSStefano Zampini PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *);
2377edd03b47SJacob Faibussowitsch PETSC_DEPRECATED_FUNCTION(3, 13, 0, "MatBindToCPU()", ) static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg)
2378d71ae5a4SJacob Faibussowitsch {
23799371c9d4SSatish Balay   return MatBindToCPU(A, flg);
23809371c9d4SSatish Balay }
238165a9ecf2SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool);
2382e9c74fd6SRichard Tran Mills PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *);
2383e7e92044SBarry Smith 
2384aa372e3fSPaul Mullowney #ifdef PETSC_HAVE_CUDA
23853f9c0db1SPaul Mullowney /*E
23862ef1f0ffSBarry Smith     MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU)
23872692e278SPaul Mullowney     matrices.
2388e057df02SPaul Mullowney 
23892ef1f0ffSBarry Smith     Values:
239087497f52SBarry Smith +   `MAT_CUSPARSE_CSR` - Compressed Sparse Row
239187497f52SBarry Smith .   `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later).
239287497f52SBarry Smith -   `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later).
2393e057df02SPaul Mullowney 
2394e057df02SPaul Mullowney     Level: intermediate
2395e057df02SPaul Mullowney 
23961cc06b55SBarry Smith .seealso: [](ch_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation`
2397e057df02SPaul Mullowney E*/
2398e057df02SPaul Mullowney 
23999371c9d4SSatish Balay typedef enum {
24009371c9d4SSatish Balay   MAT_CUSPARSE_CSR,
24019371c9d4SSatish Balay   MAT_CUSPARSE_ELL,
24029371c9d4SSatish Balay   MAT_CUSPARSE_HYB
24039371c9d4SSatish Balay } MatCUSPARSEStorageFormat;
2404e057df02SPaul Mullowney 
2405e057df02SPaul Mullowney /* these will be strings associated with enumerated type defined above */
2406e057df02SPaul Mullowney PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[];
2407e057df02SPaul Mullowney 
24083f9c0db1SPaul Mullowney /*E
24092ef1f0ffSBarry Smith     MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU)
24102692e278SPaul Mullowney     matrices whose operation should use a particular storage format.
2411e057df02SPaul Mullowney 
24122ef1f0ffSBarry Smith     Values:
24134cf0e950SBarry Smith +   `MAT_CUSPARSE_MULT_DIAG`    - sets the storage format for the diagonal matrix in the parallel `MatMult()`
24144cf0e950SBarry Smith .   `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()`
24154cf0e950SBarry Smith .   `MAT_CUSPARSE_MULT`         - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()`
24162ef1f0ffSBarry Smith -   `MAT_CUSPARSE_ALL`          - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices
2417e057df02SPaul Mullowney 
2418e057df02SPaul Mullowney     Level: intermediate
2419e057df02SPaul Mullowney 
24201cc06b55SBarry Smith .seealso: [](ch_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat`
2421e057df02SPaul Mullowney E*/
24229371c9d4SSatish Balay typedef enum {
24239371c9d4SSatish Balay   MAT_CUSPARSE_MULT_DIAG,
24249371c9d4SSatish Balay   MAT_CUSPARSE_MULT_OFFDIAG,
24259371c9d4SSatish Balay   MAT_CUSPARSE_MULT,
24269371c9d4SSatish Balay   MAT_CUSPARSE_ALL
24279371c9d4SSatish Balay } MatCUSPARSEFormatOperation;
2428e057df02SPaul Mullowney 
242910e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
243010e9db80SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2431e057df02SPaul Mullowney PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat);
2432365b711fSMark Adams PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool);
24335f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
24345f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
24355f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **);
24365f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **);
24375f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **);
24385f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **);
24395f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **);
24405f101d05SStefano Zampini PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **);
2441637a0070SStefano Zampini 
2442637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
2443637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
2444637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **);
2445637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **);
2446637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **);
2447637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **);
2448637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **);
2449637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **);
2450637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *);
2451d5ea218eSStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *);
2452637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat);
24533d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *);
24542d1451d4SHong Zhang 
24552d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
24562d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
24579ae82921SPaul Mullowney #endif
24589ae82921SPaul Mullowney 
245947d993e7Ssuyashtn #ifdef PETSC_HAVE_HIP
246047d993e7Ssuyashtn /*E
24612ef1f0ffSBarry Smith     MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU)
246247d993e7Ssuyashtn     matrices.
246347d993e7Ssuyashtn 
24642ef1f0ffSBarry Smith     Values:
24652ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_CSR` - Compressed Sparse Row
24662ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_ELL` - Ellpack
24672ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format
246847d993e7Ssuyashtn 
246916a05f60SBarry Smith     Level: intermediate
247016a05f60SBarry Smith 
24711cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation`
247247d993e7Ssuyashtn E*/
247347d993e7Ssuyashtn 
247447d993e7Ssuyashtn typedef enum {
247547d993e7Ssuyashtn   MAT_HIPSPARSE_CSR,
247647d993e7Ssuyashtn   MAT_HIPSPARSE_ELL,
247747d993e7Ssuyashtn   MAT_HIPSPARSE_HYB
247847d993e7Ssuyashtn } MatHIPSPARSEStorageFormat;
247947d993e7Ssuyashtn 
248047d993e7Ssuyashtn /* these will be strings associated with enumerated type defined above */
248147d993e7Ssuyashtn PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[];
248247d993e7Ssuyashtn 
248347d993e7Ssuyashtn /*E
24842ef1f0ffSBarry Smith     MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU)
248547d993e7Ssuyashtn     matrices whose operation should use a particular storage format.
248647d993e7Ssuyashtn 
24872ef1f0ffSBarry Smith     Values:
24882ef1f0ffSBarry Smith +   `MAT_HIPSPARSE_MULT_DIAG`    - sets the storage format for the diagonal matrix in the parallel `MatMult()`
24894cf0e950SBarry Smith .   `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the off-diagonal matrix in the parallel `MatMult()`
24902ef1f0ffSBarry Smith .   `MAT_HIPSPARSE_MULT`         - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()`
24912ef1f0ffSBarry Smith -   `MAT_HIPSPARSE_ALL`          - sets the storage format for all HIPSPARSE (GPU) matrices
24922ef1f0ffSBarry Smith 
249316a05f60SBarry Smith     Level: intermediate
249416a05f60SBarry Smith 
24951cc06b55SBarry Smith .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat`
249647d993e7Ssuyashtn E*/
249747d993e7Ssuyashtn typedef enum {
249847d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_DIAG,
249947d993e7Ssuyashtn   MAT_HIPSPARSE_MULT_OFFDIAG,
250047d993e7Ssuyashtn   MAT_HIPSPARSE_MULT,
250147d993e7Ssuyashtn   MAT_HIPSPARSE_ALL
250247d993e7Ssuyashtn } MatHIPSPARSEFormatOperation;
250347d993e7Ssuyashtn 
250447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
250547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
250647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat);
250747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool);
250847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
250947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
251047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **);
251147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **);
251247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **);
251347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **);
251447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **);
251547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **);
251647d993e7Ssuyashtn 
251747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
251847d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
251947d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **);
252047d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **);
252147d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **);
252247d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **);
252347d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **);
252447d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **);
252547d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *);
252647d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *);
252747d993e7Ssuyashtn PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat);
25283d9668e3SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *);
252947d993e7Ssuyashtn #endif
253047d993e7Ssuyashtn 
2531d67ff14aSKarl Rupp #if defined(PETSC_HAVE_VIENNACL)
2532d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2533d67ff14aSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2534d67ff14aSKarl Rupp #endif
2535d67ff14aSKarl Rupp 
25364bf303faSJacob Faibussowitsch #if PetscDefined(HAVE_KOKKOS)
25374bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
25384bf303faSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreateSeqAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
25394bf303faSJacob Faibussowitsch #endif
25404bf303faSJacob Faibussowitsch 
254154efbe56SHong Zhang #if defined(PETSC_HAVE_FFTW)
2542014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec);
2543014dd563SJed Brown PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec);
25442a7a6963SBarry Smith PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *);
254554efbe56SHong Zhang #endif
254654efbe56SHong Zhang 
2547d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
2548d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2549d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt);
2550d24d4204SJose E. Roman PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *);
2551d24d4204SJose E. Roman #endif
2552d24d4204SJose E. Roman 
2553014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *);
2554014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *);
2555014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]);
2556014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]);
2557014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***);
2558014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *);
255919fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType);
2560014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]);
2561014dd563SJed Brown PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat);
2562d8588912SDave May 
25632ce66baaSPierre Jolivet PETSC_EXTERN PetscErrorCode MatFilter(Mat, PetscReal, PetscBool, PetscBool);
25642ce66baaSPierre Jolivet PETSC_DEPRECATED_FUNCTION(3, 20, 0, "MatFilter()", ) static inline PetscErrorCode MatChop(Mat A, PetscReal tol)
25652ce66baaSPierre Jolivet {
25662ce66baaSPierre Jolivet   return MatFilter(A, tol, PETSC_FALSE, PETSC_FALSE);
25672ce66baaSPierre Jolivet }
2568e0a58c10SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *);
25694325cce7SMatthew G Knepley 
2570b541e6a4SDmitry Karpeev PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **);
257153dd7562SDmitry Karpeev 
2572c094ef40SMatthew G. Knepley PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat);
2573c094ef40SMatthew G. Knepley 
257402218ef1SBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderMerge(Mat, Mat *);
2575539c167fSBarry Smith PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *);
25761a2c6b5cSJunchao Zhang 
25777ee59b9bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *);
257872833a62Smarkadams4 
2579e02fb3cdSMark Adams PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, PetscInt, PetscInt[], Mat *);
258058c11ad4SPierre Jolivet PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat, PetscBool);
2581ad6ad4e1SHansol  Suh 
2582d16ceb75SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *);
25833444e80cSBarry Smith 
25843444e80cSBarry Smith PETSC_EXTERN PetscErrorCode MatSetHPL(Mat, int);
25853444e80cSBarry Smith #define PETSCBMHPL "hpl"
2586