1 /* 2 Include file for the matrix component of PETSc 3 */ 4 #ifndef __PETSCMAT_H 5 #define __PETSCMAT_H 6 #include "petscvec.h" 7 PETSC_EXTERN_CXX_BEGIN 8 9 /*S 10 Mat - Abstract PETSc matrix object 11 12 Level: beginner 13 14 Concepts: matrix; linear operator 15 16 .seealso: MatCreate(), MatType, MatSetType() 17 S*/ 18 typedef struct _p_Mat* Mat; 19 20 /*E 21 MatType - String with the name of a PETSc matrix or the creation function 22 with an optional dynamic library name, for example 23 http://www.mcs.anl.gov/petsc/lib.a:mymatcreate() 24 25 Level: beginner 26 27 .seealso: MatSetType(), Mat, MatSolverPackage 28 E*/ 29 #define MatType char* 30 #define MATSAME "same" 31 #define MATMAIJ "maij" 32 #define MATSEQMAIJ "seqmaij" 33 #define MATMPIMAIJ "mpimaij" 34 #define MATIS "is" 35 #define MATAIJ "aij" 36 #define MATSEQAIJ "seqaij" 37 #define MATSEQPTHREADAIJ "seqpthreadaij" 38 #define MATMPIAIJ "mpiaij" 39 #define MATAIJCRL "aijcrl" 40 #define MATSEQAIJCRL "seqaijcrl" 41 #define MATMPIAIJCRL "mpiaijcrl" 42 #define MATAIJCUSP "aijcusp" 43 #define MATSEQAIJCUSP "seqaijcusp" 44 #define MATMPIAIJCUSP "mpiaijcusp" 45 #define MATAIJPERM "aijperm" 46 #define MATSEQAIJPERM "seqaijperm" 47 #define MATMPIAIJPERM "mpiaijperm" 48 #define MATSHELL "shell" 49 #define MATDENSE "dense" 50 #define MATSEQDENSE "seqdense" 51 #define MATMPIDENSE "mpidense" 52 #define MATBAIJ "baij" 53 #define MATSEQBAIJ "seqbaij" 54 #define MATMPIBAIJ "mpibaij" 55 #define MATMPIADJ "mpiadj" 56 #define MATSBAIJ "sbaij" 57 #define MATSEQSBAIJ "seqsbaij" 58 #define MATMPISBAIJ "mpisbaij" 59 60 #define MATSEQBSTRM "seqbstrm" 61 #define MATMPIBSTRM "mpibstrm" 62 #define MATBSTRM "bstrm" 63 #define MATSEQSBSTRM "seqsbstrm" 64 #define MATMPISBSTRM "mpisbstrm" 65 #define MATSBSTRM "sbstrm" 66 67 #define MATDAAD "daad" 68 #define MATMFFD "mffd" 69 #define MATNORMAL "normal" 70 #define MATLRC "lrc" 71 #define MATSCATTER "scatter" 72 #define MATBLOCKMAT "blockmat" 73 #define MATCOMPOSITE "composite" 74 #define MATFFT "fft" 75 #define MATFFTW "fftw" 76 #define MATSEQCUFFT "seqcufft" 77 #define MATTRANSPOSEMAT "transpose" 78 #define MATSCHURCOMPLEMENT "schurcomplement" 79 #define MATPYTHON "python" 80 #define MATHYPRESTRUCT "hyprestruct" 81 #define MATHYPRESSTRUCT "hypresstruct" 82 #define MATSUBMATRIX "submatrix" 83 #define MATLOCALREF "localref" 84 #define MATNEST "nest" 85 86 /*E 87 MatSolverPackage - String with the name of a PETSc matrix solver type. 88 89 For example: "petsc" indicates what PETSc provides, "superlu" indicates either 90 SuperLU or SuperLU_Dist etc. 91 92 93 Level: beginner 94 95 .seealso: MatGetFactor(), Mat, MatSetType(), MatType 96 E*/ 97 #define MatSolverPackage char* 98 #define MATSOLVERSPOOLES "spooles" 99 #define MATSOLVERSUPERLU "superlu" 100 #define MATSOLVERSUPERLU_DIST "superlu_dist" 101 #define MATSOLVERUMFPACK "umfpack" 102 #define MATSOLVERCHOLMOD "cholmod" 103 #define MATSOLVERESSL "essl" 104 #define MATSOLVERLUSOL "lusol" 105 #define MATSOLVERMUMPS "mumps" 106 #define MATSOLVERPASTIX "pastix" 107 #define MATSOLVERDSCPACK "dscpack" 108 #define MATSOLVERMATLAB "matlab" 109 #define MATSOLVERPETSC "petsc" 110 #define MATSOLVERPLAPACK "plapack" 111 #define MATSOLVERBAS "bas" 112 113 #define MATSOLVERBSTRM "bstrm" 114 #define MATSOLVERSBSTRM "sbstrm" 115 116 /*E 117 MatFactorType - indicates what type of factorization is requested 118 119 Level: beginner 120 121 Any additions/changes here MUST also be made in include/finclude/petscmat.h 122 123 .seealso: MatSolverPackage, MatGetFactor() 124 E*/ 125 typedef enum {MAT_FACTOR_NONE, MAT_FACTOR_LU, MAT_FACTOR_CHOLESKY, MAT_FACTOR_ILU, MAT_FACTOR_ICC,MAT_FACTOR_ILUDT} MatFactorType; 126 extern const char *const MatFactorTypes[]; 127 128 extern PetscErrorCode MatGetFactor(Mat,const MatSolverPackage,MatFactorType,Mat*); 129 extern PetscErrorCode MatGetFactorAvailable(Mat,const MatSolverPackage,MatFactorType,PetscBool *); 130 extern PetscErrorCode MatFactorGetSolverPackage(Mat,const MatSolverPackage*); 131 extern PetscErrorCode MatGetFactorType(Mat,MatFactorType*); 132 133 /* Logging support */ 134 #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */ 135 extern PetscClassId MAT_CLASSID; 136 extern PetscClassId MAT_FDCOLORING_CLASSID; 137 extern PetscClassId MAT_PARTITIONING_CLASSID; 138 extern PetscClassId MAT_NULLSPACE_CLASSID; 139 extern PetscClassId MATMFFD_CLASSID; 140 141 /*E 142 MatReuse - Indicates if matrices obtained from a previous call to MatGetSubMatrices() 143 or MatGetSubMatrix() are to be reused to store the new matrix values. For MatConvert() is used to indicate 144 that the input matrix is to be replaced with the converted matrix. 145 146 Level: beginner 147 148 Any additions/changes here MUST also be made in include/finclude/petscmat.h 149 150 .seealso: MatGetSubMatrices(), MatGetSubMatrix(), MatDestroyMatrices(), MatConvert() 151 E*/ 152 typedef enum {MAT_INITIAL_MATRIX,MAT_REUSE_MATRIX,MAT_IGNORE_MATRIX} MatReuse; 153 154 /*E 155 MatGetSubMatrixOption - Indicates if matrices obtained from a call to MatGetSubMatrices() 156 include the matrix values. Currently it is only used by MatGetSeqNonzerostructure(). 157 158 Level: beginner 159 160 .seealso: MatGetSeqNonzerostructure() 161 E*/ 162 typedef enum {MAT_DO_NOT_GET_VALUES,MAT_GET_VALUES} MatGetSubMatrixOption; 163 164 extern PetscErrorCode MatInitializePackage(const char[]); 165 166 extern PetscErrorCode MatCreate(MPI_Comm,Mat*); 167 PetscPolymorphicFunction(MatCreate,(MPI_Comm comm),(comm,&A),Mat,A) 168 PetscPolymorphicFunction(MatCreate,(),(PETSC_COMM_WORLD,&A),Mat,A) 169 extern PetscErrorCode MatSetSizes(Mat,PetscInt,PetscInt,PetscInt,PetscInt); 170 extern PetscErrorCode MatSetType(Mat,const MatType); 171 extern PetscErrorCode MatSetFromOptions(Mat); 172 extern PetscErrorCode MatSetUpPreallocation(Mat); 173 extern PetscErrorCode MatRegisterAll(const char[]); 174 extern PetscErrorCode MatRegister(const char[],const char[],const char[],PetscErrorCode(*)(Mat)); 175 extern PetscErrorCode MatRegisterBaseName(const char[],const char[],const char[]); 176 extern PetscErrorCode MatSetOptionsPrefix(Mat,const char[]); 177 extern PetscErrorCode MatAppendOptionsPrefix(Mat,const char[]); 178 extern PetscErrorCode MatGetOptionsPrefix(Mat,const char*[]); 179 180 /*MC 181 MatRegisterDynamic - Adds a new matrix type 182 183 Synopsis: 184 PetscErrorCode MatRegisterDynamic(const char *name,const char *path,const char *name_create,PetscErrorCode (*routine_create)(Mat)) 185 186 Not Collective 187 188 Input Parameters: 189 + name - name of a new user-defined matrix type 190 . path - path (either absolute or relative) the library containing this solver 191 . name_create - name of routine to create method context 192 - routine_create - routine to create method context 193 194 Notes: 195 MatRegisterDynamic() may be called multiple times to add several user-defined solvers. 196 197 If dynamic libraries are used, then the fourth input argument (routine_create) 198 is ignored. 199 200 Sample usage: 201 .vb 202 MatRegisterDynamic("my_mat",/home/username/my_lib/lib/libO/solaris/mylib.a, 203 "MyMatCreate",MyMatCreate); 204 .ve 205 206 Then, your solver can be chosen with the procedural interface via 207 $ MatSetType(Mat,"my_mat") 208 or at runtime via the option 209 $ -mat_type my_mat 210 211 Level: advanced 212 213 Notes: ${PETSC_ARCH} occuring in pathname will be replaced with appropriate values. 214 If your function is not being put into a shared library then use VecRegister() instead 215 216 .keywords: Mat, register 217 218 .seealso: MatRegisterAll(), MatRegisterDestroy() 219 220 M*/ 221 #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 222 #define MatRegisterDynamic(a,b,c,d) MatRegister(a,b,c,0) 223 #else 224 #define MatRegisterDynamic(a,b,c,d) MatRegister(a,b,c,d) 225 #endif 226 227 extern PetscBool MatRegisterAllCalled; 228 extern PetscFList MatList; 229 extern PetscFList MatColoringList; 230 extern PetscFList MatPartitioningList; 231 232 /*E 233 MatStructure - Indicates if the matrix has the same nonzero structure 234 235 Level: beginner 236 237 Any additions/changes here MUST also be made in include/finclude/petscmat.h 238 239 .seealso: MatCopy(), KSPSetOperators(), PCSetOperators() 240 E*/ 241 typedef enum {SAME_NONZERO_PATTERN,DIFFERENT_NONZERO_PATTERN,SAME_PRECONDITIONER,SUBSET_NONZERO_PATTERN} MatStructure; 242 243 extern PetscErrorCode MatCreateSeqDense(MPI_Comm,PetscInt,PetscInt,PetscScalar[],Mat*); 244 extern PetscErrorCode MatCreateMPIDense(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar[],Mat*); 245 extern PetscErrorCode MatCreateSeqAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 246 PetscPolymorphicFunction(MatCreateSeqAIJ,(PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[]),(PETSC_COMM_SELF,m,n,nz,nnz,&A),Mat,A) 247 PetscPolymorphicFunction(MatCreateSeqAIJ,(PetscInt m,PetscInt n,PetscInt nz),(PETSC_COMM_SELF,m,n,nz,PETSC_NULL,&A),Mat,A) 248 PetscPolymorphicFunction(MatCreateSeqAIJ,(PetscInt m,PetscInt n,const PetscInt nnz[]),(PETSC_COMM_SELF,m,n,0,nnz,&A),Mat,A) 249 PetscPolymorphicFunction(MatCreateSeqAIJ,(PetscInt m,PetscInt n),(PETSC_COMM_SELF,m,n,0,PETSC_NULL,&A),Mat,A) 250 PetscPolymorphicSubroutine(MatCreateSeqAIJ,(PetscInt m,PetscInt n,PetscInt nz,Mat *A),(PETSC_COMM_SELF,m,n,nz,PETSC_NULL,A)) 251 PetscPolymorphicSubroutine(MatCreateSeqAIJ,(PetscInt m,PetscInt n,const PetscInt nnz[],Mat *A),(PETSC_COMM_SELF,m,n,0,nnz,A)) 252 PetscPolymorphicSubroutine(MatCreateSeqAIJ,(PetscInt m,PetscInt n,Mat *A),(PETSC_COMM_SELF,m,n,0,PETSC_NULL,A)) 253 extern PetscErrorCode MatCreateMPIAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 254 PetscPolymorphicFunction(MatCreateMPIAIJ,(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,const PetscInt nnz[],PetscInt onz,const PetscInt onnz[]),(comm,m,n,M,N,nz,nnz,onz,onnz,&A),Mat,A) 255 PetscPolymorphicFunction(MatCreateMPIAIJ,(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz),(comm,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,&A),Mat,A) 256 PetscPolymorphicFunction(MatCreateMPIAIJ,(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[]),(comm,m,n,M,N,0,nnz,0,onz,&A),Mat,A) 257 PetscPolymorphicFunction(MatCreateMPIAIJ,(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N),(comm,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,&A),Mat,A) 258 PetscPolymorphicSubroutine(MatCreateMPIAIJ,(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz,Mat *A),(comm,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,A)) 259 PetscPolymorphicSubroutine(MatCreateMPIAIJ,(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[],Mat *A),(comm,m,n,M,N,0,nnz,0,onz,A)) 260 PetscPolymorphicSubroutine(MatCreateMPIAIJ,(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,Mat *A),(comm,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,A)) 261 PetscPolymorphicFunction(MatCreateMPIAIJ,(PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,const PetscInt nnz[],PetscInt onz,const PetscInt onnz[]),(PETSC_COMM_WORLD,m,n,M,N,nz,nnz,onz,onnz,&A),Mat,A) 262 PetscPolymorphicFunction(MatCreateMPIAIJ,(PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz),(PETSC_COMM_WORLD,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,&A),Mat,A) 263 PetscPolymorphicFunction(MatCreateMPIAIJ,(PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[]),(PETSC_COMM_WORLD,m,n,M,N,0,nnz,0,onz,&A),Mat,A) 264 PetscPolymorphicFunction(MatCreateMPIAIJ,(PetscInt m,PetscInt n,PetscInt M,PetscInt N),(PETSC_COMM_WORLD,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,&A),Mat,A) 265 PetscPolymorphicSubroutine(MatCreateMPIAIJ,(PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz,Mat *A),(PETSC_COMM_WORLD,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,A)) 266 PetscPolymorphicSubroutine(MatCreateMPIAIJ,(PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[],Mat *A),(PETSC_COMM_WORLD,m,n,M,N,0,nnz,0,onz,A)) 267 PetscPolymorphicSubroutine(MatCreateMPIAIJ,(PetscInt m,PetscInt n,PetscInt M,PetscInt N,Mat *A),(PETSC_COMM_WORLD,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,A)) 268 extern PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[],Mat *); 269 extern PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],PetscInt[],PetscInt[],PetscScalar[],Mat*); 270 271 extern PetscErrorCode MatCreateSeqBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 272 PetscPolymorphicFunction(MatCreateSeqBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[]),(PETSC_COMM_SELF,bs,m,n,nz,nnz,&A),Mat,A) 273 PetscPolymorphicFunction(MatCreateSeqBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt nz),(PETSC_COMM_SELF,bs,m,n,nz,PETSC_NULL,&A),Mat,A) 274 PetscPolymorphicFunction(MatCreateSeqBAIJ,(PetscInt bs,PetscInt m,PetscInt n,const PetscInt nnz[]),(PETSC_COMM_SELF,bs,m,n,0,nnz,&A),Mat,A) 275 PetscPolymorphicFunction(MatCreateSeqBAIJ,(PetscInt bs,PetscInt m,PetscInt n),(PETSC_COMM_SELF,bs,m,n,0,PETSC_NULL,&A),Mat,A) 276 PetscPolymorphicSubroutine(MatCreateSeqBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,Mat *A),(PETSC_COMM_SELF,bs,m,n,nz,PETSC_NULL,A)) 277 PetscPolymorphicSubroutine(MatCreateSeqBAIJ,(PetscInt bs,PetscInt m,PetscInt n,const PetscInt nnz[],Mat *A),(PETSC_COMM_SELF,bs,m,n,0,nnz,A)) 278 PetscPolymorphicSubroutine(MatCreateSeqBAIJ,(PetscInt bs,PetscInt m,PetscInt n,Mat *A),(PETSC_COMM_SELF,bs,m,n,0,PETSC_NULL,A)) 279 extern PetscErrorCode MatCreateMPIBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 280 PetscPolymorphicFunction(MatCreateMPIBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,const PetscInt nnz[],PetscInt onz,const PetscInt onnz[]),(comm,bs,m,n,M,N,nz,nnz,onz,onnz,&A),Mat,A) 281 PetscPolymorphicFunction(MatCreateMPIBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz),(comm,bs,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,&A),Mat,A) 282 PetscPolymorphicFunction(MatCreateMPIBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[]),(comm,bs,m,n,M,N,0,nnz,0,onz,&A),Mat,A) 283 PetscPolymorphicFunction(MatCreateMPIBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N),(comm,bs,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,&A),Mat,A) 284 PetscPolymorphicSubroutine(MatCreateMPIBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz,Mat *A),(comm,bs,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,A)) 285 PetscPolymorphicSubroutine(MatCreateMPIBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[],Mat *A),(comm,bs,m,n,M,N,0,nnz,0,onz,A)) 286 PetscPolymorphicSubroutine(MatCreateMPIBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,Mat *A),(comm,bs,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,A)) 287 PetscPolymorphicFunction(MatCreateMPIBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,const PetscInt nnz[],PetscInt onz,const PetscInt onnz[]),(PETSC_COMM_WORLD,bs,m,n,M,N,nz,nnz,onz,onnz,&A),Mat,A) 288 PetscPolymorphicFunction(MatCreateMPIBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz),(PETSC_COMM_WORLD,bs,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,&A),Mat,A) 289 PetscPolymorphicFunction(MatCreateMPIBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[]),(PETSC_COMM_WORLD,bs,m,n,M,N,0,nnz,0,onz,&A),Mat,A) 290 PetscPolymorphicFunction(MatCreateMPIBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N),(PETSC_COMM_WORLD,bs,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,&A),Mat,A) 291 PetscPolymorphicSubroutine(MatCreateMPIBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz,Mat *A),(PETSC_COMM_WORLD,bs,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,A)) 292 PetscPolymorphicSubroutine(MatCreateMPIBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[],Mat *A),(PETSC_COMM_WORLD,bs,m,n,M,N,0,nnz,0,onz,A)) 293 PetscPolymorphicSubroutine(MatCreateMPIBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,Mat *A),(PETSC_COMM_WORLD,bs,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,A)) 294 extern PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[],Mat*); 295 296 extern PetscErrorCode MatCreateMPIAdj(MPI_Comm,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscInt[],Mat*); 297 extern PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 298 PetscPolymorphicFunction(MatCreateSeqSBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[]),(PETSC_COMM_SELF,bs,m,n,nz,nnz,&A),Mat,A) 299 PetscPolymorphicFunction(MatCreateSeqSBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt nz),(PETSC_COMM_SELF,bs,m,n,nz,PETSC_NULL,&A),Mat,A) 300 PetscPolymorphicFunction(MatCreateSeqSBAIJ,(PetscInt bs,PetscInt m,PetscInt n,const PetscInt nnz[]),(PETSC_COMM_SELF,bs,m,n,0,nnz,&A),Mat,A) 301 PetscPolymorphicFunction(MatCreateSeqSBAIJ,(PetscInt bs,PetscInt m,PetscInt n),(PETSC_COMM_SELF,bs,m,n,0,PETSC_NULL,&A),Mat,A) 302 PetscPolymorphicSubroutine(MatCreateSeqSBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,Mat *A),(PETSC_COMM_SELF,bs,m,n,nz,PETSC_NULL,A)) 303 PetscPolymorphicSubroutine(MatCreateSeqSBAIJ,(PetscInt bs,PetscInt m,PetscInt n,const PetscInt nnz[],Mat *A),(PETSC_COMM_SELF,bs,m,n,0,nnz,A)) 304 PetscPolymorphicSubroutine(MatCreateSeqSBAIJ,(PetscInt bs,PetscInt m,PetscInt n,Mat *A),(PETSC_COMM_SELF,bs,m,n,0,PETSC_NULL,A)) 305 306 extern PetscErrorCode MatCreateMPISBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 307 PetscPolymorphicFunction(MatCreateMPISBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,const PetscInt nnz[],PetscInt onz,const PetscInt onnz[]),(comm,bs,m,n,M,N,nz,nnz,onz,onnz,&A),Mat,A) 308 PetscPolymorphicFunction(MatCreateMPISBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz),(comm,bs,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,&A),Mat,A) 309 PetscPolymorphicFunction(MatCreateMPISBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[]),(comm,bs,m,n,M,N,0,nnz,0,onz,&A),Mat,A) 310 PetscPolymorphicFunction(MatCreateMPISBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N),(comm,bs,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,&A),Mat,A) 311 PetscPolymorphicSubroutine(MatCreateMPISBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz,Mat *A),(comm,bs,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,A)) 312 PetscPolymorphicSubroutine(MatCreateMPISBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[],Mat *A),(comm,bs,m,n,M,N,0,nnz,0,onz,A)) 313 PetscPolymorphicSubroutine(MatCreateMPISBAIJ,(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,Mat *A),(comm,bs,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,A)) 314 PetscPolymorphicFunction(MatCreateMPISBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,const PetscInt nnz[],PetscInt onz,const PetscInt onnz[]),(PETSC_COMM_WORLD,bs,m,n,M,N,nz,nnz,onz,onnz,&A),Mat,A) 315 PetscPolymorphicFunction(MatCreateMPISBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz),(PETSC_COMM_WORLD,bs,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,&A),Mat,A) 316 PetscPolymorphicFunction(MatCreateMPISBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[]),(PETSC_COMM_WORLD,bs,m,n,M,N,0,nnz,0,onz,&A),Mat,A) 317 PetscPolymorphicFunction(MatCreateMPISBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N),(PETSC_COMM_WORLD,bs,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,&A),Mat,A) 318 PetscPolymorphicSubroutine(MatCreateMPISBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt nz,PetscInt nnz,Mat *A),(PETSC_COMM_WORLD,bs,m,n,M,N,nz,PETSC_NULL,nnz,PETSC_NULL,A)) 319 PetscPolymorphicSubroutine(MatCreateMPISBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt nnz[],const PetscInt onz[],Mat *A),(PETSC_COMM_WORLD,bs,m,n,M,N,0,nnz,0,onz,A)) 320 PetscPolymorphicSubroutine(MatCreateMPISBAIJ,(PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,Mat *A),(PETSC_COMM_WORLD,bs,m,n,M,N,0,PETSC_NULL,0,PETSC_NULL,A)) 321 extern PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[],Mat *); 322 extern PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 323 324 extern PetscErrorCode MatCreateShell(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,void *,Mat*); 325 PetscPolymorphicFunction(MatCreateShell,(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,void *ctx),(comm,m,n,M,N,ctx,&A),Mat,A) 326 PetscPolymorphicFunction(MatCreateShell,(PetscInt m,PetscInt n,PetscInt M,PetscInt N,void *ctx),(PETSC_COMM_WORLD,m,n,M,N,ctx,&A),Mat,A) 327 extern PetscErrorCode MatCreateAdic(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,void (*)(void),Mat*); 328 extern PetscErrorCode MatCreateNormal(Mat,Mat*); 329 PetscPolymorphicFunction(MatCreateNormal,(Mat mat),(mat,&A),Mat,A) 330 extern PetscErrorCode MatCreateLRC(Mat,Mat,Mat,Mat*); 331 extern PetscErrorCode MatCreateIS(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,ISLocalToGlobalMapping,Mat*); 332 extern PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 333 extern PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 334 335 extern PetscErrorCode MatCreateSeqBSTRM(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 336 extern PetscErrorCode MatCreateMPIBSTRM(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 337 extern PetscErrorCode MatCreateSeqSBSTRM(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 338 extern PetscErrorCode MatCreateMPISBSTRM(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 339 340 extern PetscErrorCode MatCreateScatter(MPI_Comm,VecScatter,Mat*); 341 extern PetscErrorCode MatScatterSetVecScatter(Mat,VecScatter); 342 extern PetscErrorCode MatScatterGetVecScatter(Mat,VecScatter*); 343 extern PetscErrorCode MatCreateBlockMat(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt*,Mat*); 344 extern PetscErrorCode MatCompositeAddMat(Mat,Mat); 345 extern PetscErrorCode MatCompositeMerge(Mat); 346 extern PetscErrorCode MatCreateComposite(MPI_Comm,PetscInt,const Mat*,Mat*); 347 typedef enum {MAT_COMPOSITE_ADDITIVE,MAT_COMPOSITE_MULTIPLICATIVE} MatCompositeType; 348 extern PetscErrorCode MatCompositeSetType(Mat,MatCompositeType); 349 350 extern PetscErrorCode MatCreateFFT(MPI_Comm,PetscInt,const PetscInt[],const MatType,Mat*); 351 extern PetscErrorCode MatCreateSeqCUFFT(MPI_Comm,PetscInt,const PetscInt[],Mat*); 352 353 extern PetscErrorCode MatCreateTranspose(Mat,Mat*); 354 extern PetscErrorCode MatCreateSubMatrix(Mat,IS,IS,Mat*); 355 extern PetscErrorCode MatSubMatrixUpdate(Mat,Mat,IS,IS); 356 extern PetscErrorCode MatCreateLocalRef(Mat,IS,IS,Mat*); 357 358 extern PetscErrorCode MatPythonSetType(Mat,const char[]); 359 360 extern PetscErrorCode MatSetUp(Mat); 361 extern PetscErrorCode MatDestroy(Mat*); 362 363 extern PetscErrorCode MatConjugate(Mat); 364 extern PetscErrorCode MatRealPart(Mat); 365 extern PetscErrorCode MatImaginaryPart(Mat); 366 extern PetscErrorCode MatGetDiagonalBlock(Mat,Mat*); 367 extern PetscErrorCode MatGetTrace(Mat,PetscScalar*); 368 369 /* ------------------------------------------------------------*/ 370 extern PetscErrorCode MatSetValues(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 371 extern PetscErrorCode MatSetValuesBlocked(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 372 extern PetscErrorCode MatSetValuesRow(Mat,PetscInt,const PetscScalar[]); 373 extern PetscErrorCode MatSetValuesRowLocal(Mat,PetscInt,const PetscScalar[]); 374 375 /*S 376 MatStencil - Data structure (C struct) for storing information about a single row or 377 column of a matrix as index on an associated grid. 378 379 Level: beginner 380 381 Concepts: matrix; linear operator 382 383 .seealso: MatSetValuesStencil(), MatSetStencil(), MatSetValuesBlockStencil() 384 S*/ 385 typedef struct { 386 PetscInt k,j,i,c; 387 } MatStencil; 388 389 extern PetscErrorCode MatSetValuesStencil(Mat,PetscInt,const MatStencil[],PetscInt,const MatStencil[],const PetscScalar[],InsertMode); 390 extern PetscErrorCode MatSetValuesBlockedStencil(Mat,PetscInt,const MatStencil[],PetscInt,const MatStencil[],const PetscScalar[],InsertMode); 391 extern PetscErrorCode MatSetStencil(Mat,PetscInt,const PetscInt[],const PetscInt[],PetscInt); 392 393 extern PetscErrorCode MatSetColoring(Mat,ISColoring); 394 extern PetscErrorCode MatSetValuesAdic(Mat,void*); 395 extern PetscErrorCode MatSetValuesAdifor(Mat,PetscInt,void*); 396 397 /*E 398 MatAssemblyType - Indicates if the matrix is now to be used, or if you plan 399 to continue to add values to it 400 401 Level: beginner 402 403 .seealso: MatAssemblyBegin(), MatAssemblyEnd() 404 E*/ 405 typedef enum {MAT_FLUSH_ASSEMBLY=1,MAT_FINAL_ASSEMBLY=0} MatAssemblyType; 406 extern PetscErrorCode MatAssemblyBegin(Mat,MatAssemblyType); 407 extern PetscErrorCode MatAssemblyEnd(Mat,MatAssemblyType); 408 extern PetscErrorCode MatAssembled(Mat,PetscBool *); 409 410 411 412 /*E 413 MatOption - Options that may be set for a matrix and its behavior or storage 414 415 Level: beginner 416 417 Any additions/changes here MUST also be made in include/finclude/petscmat.h 418 419 .seealso: MatSetOption() 420 E*/ 421 typedef enum {MAT_ROW_ORIENTED,MAT_NEW_NONZERO_LOCATIONS, 422 MAT_SYMMETRIC, 423 MAT_STRUCTURALLY_SYMMETRIC, 424 MAT_NEW_DIAGONALS,MAT_IGNORE_OFF_PROC_ENTRIES, 425 MAT_NEW_NONZERO_LOCATION_ERR, 426 MAT_NEW_NONZERO_ALLOCATION_ERR,MAT_USE_HASH_TABLE, 427 MAT_KEEP_NONZERO_PATTERN,MAT_IGNORE_ZERO_ENTRIES, 428 MAT_USE_INODES, 429 MAT_HERMITIAN, 430 MAT_SYMMETRY_ETERNAL, 431 MAT_CHECK_COMPRESSED_ROW, 432 MAT_IGNORE_LOWER_TRIANGULAR,MAT_ERROR_LOWER_TRIANGULAR, 433 MAT_GETROW_UPPERTRIANGULAR,MAT_UNUSED_NONZERO_LOCATION_ERR, 434 MAT_SPD,MAT_NO_OFF_PROC_ENTRIES,MAT_NO_OFF_PROC_ZERO_ROWS, 435 NUM_MAT_OPTIONS} MatOption; 436 extern const char *MatOptions[]; 437 extern PetscErrorCode MatSetOption(Mat,MatOption,PetscBool ); 438 extern PetscErrorCode MatGetType(Mat,const MatType*); 439 PetscPolymorphicFunction(MatGetType,(Mat mat),(mat,&t),const MatType,t) 440 441 extern PetscErrorCode MatGetValues(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar[]); 442 extern PetscErrorCode MatGetRow(Mat,PetscInt,PetscInt *,const PetscInt *[],const PetscScalar*[]); 443 extern PetscErrorCode MatRestoreRow(Mat,PetscInt,PetscInt *,const PetscInt *[],const PetscScalar*[]); 444 extern PetscErrorCode MatGetRowUpperTriangular(Mat); 445 extern PetscErrorCode MatRestoreRowUpperTriangular(Mat); 446 extern PetscErrorCode MatGetColumn(Mat,PetscInt,PetscInt *,const PetscInt *[],const PetscScalar*[]); 447 extern PetscErrorCode MatRestoreColumn(Mat,PetscInt,PetscInt *,const PetscInt *[],const PetscScalar*[]); 448 extern PetscErrorCode MatGetColumnVector(Mat,Vec,PetscInt); 449 extern PetscErrorCode MatGetArray(Mat,PetscScalar *[]); 450 PetscPolymorphicFunction(MatGetArray,(Mat mat),(mat,&a),PetscScalar*,a) 451 extern PetscErrorCode MatRestoreArray(Mat,PetscScalar *[]); 452 extern PetscErrorCode MatGetBlockSize(Mat,PetscInt *); 453 PetscPolymorphicFunction(MatGetBlockSize,(Mat mat),(mat,&a),PetscInt,a) 454 extern PetscErrorCode MatSetBlockSize(Mat,PetscInt); 455 456 457 extern PetscErrorCode MatMult(Mat,Vec,Vec); 458 extern PetscErrorCode MatMultDiagonalBlock(Mat,Vec,Vec); 459 extern PetscErrorCode MatMultAdd(Mat,Vec,Vec,Vec); 460 PetscPolymorphicSubroutine(MatMultAdd,(Mat A,Vec x,Vec y),(A,x,y,y)) 461 extern PetscErrorCode MatMultTranspose(Mat,Vec,Vec); 462 extern PetscErrorCode MatMultHermitianTranspose(Mat,Vec,Vec); 463 extern PetscErrorCode MatIsTranspose(Mat,Mat,PetscReal,PetscBool *); 464 PetscPolymorphicFunction(MatIsTranspose,(Mat A,Mat B,PetscReal tol),(A,B,tol,&t),PetscBool ,t) 465 PetscPolymorphicFunction(MatIsTranspose,(Mat A,Mat B),(A,B,0,&t),PetscBool ,t) 466 extern PetscErrorCode MatIsHermitianTranspose(Mat,Mat,PetscReal,PetscBool *); 467 extern PetscErrorCode MatMultTransposeAdd(Mat,Vec,Vec,Vec); 468 extern PetscErrorCode MatMultHermitianTransposeAdd(Mat,Vec,Vec,Vec); 469 PetscPolymorphicSubroutine(MatMultTransposeAdd,(Mat A,Vec x,Vec y),(A,x,y,y)) 470 extern PetscErrorCode MatMultConstrained(Mat,Vec,Vec); 471 extern PetscErrorCode MatMultTransposeConstrained(Mat,Vec,Vec); 472 extern PetscErrorCode MatMatSolve(Mat,Mat,Mat); 473 474 /*E 475 MatDuplicateOption - Indicates if a duplicated sparse matrix should have 476 its numerical values copied over or just its nonzero structure. 477 478 Level: beginner 479 480 Any additions/changes here MUST also be made in include/finclude/petscmat.h 481 482 $ MAT_SHARE_NONZERO_PATTERN - the i and j arrays in the new matrix will be shared with the original matrix 483 $ this also triggers the MAT_DO_NOT_COPY_VALUES option. This is used when you 484 $ have several matrices with the same nonzero pattern. 485 486 .seealso: MatDuplicate() 487 E*/ 488 typedef enum {MAT_DO_NOT_COPY_VALUES,MAT_COPY_VALUES,MAT_SHARE_NONZERO_PATTERN} MatDuplicateOption; 489 490 extern PetscErrorCode MatConvert(Mat,const MatType,MatReuse,Mat*); 491 PetscPolymorphicFunction(MatConvert,(Mat A,const MatType t),(A,t,MAT_INITIAL_MATRIX,&a),Mat,a) 492 extern PetscErrorCode MatDuplicate(Mat,MatDuplicateOption,Mat*); 493 PetscPolymorphicFunction(MatDuplicate,(Mat A,MatDuplicateOption o),(A,o,&a),Mat,a) 494 PetscPolymorphicFunction(MatDuplicate,(Mat A),(A,MAT_COPY_VALUES,&a),Mat,a) 495 496 497 extern PetscErrorCode MatCopy(Mat,Mat,MatStructure); 498 extern PetscErrorCode MatView(Mat,PetscViewer); 499 extern PetscErrorCode MatIsSymmetric(Mat,PetscReal,PetscBool *); 500 PetscPolymorphicFunction(MatIsSymmetric,(Mat A,PetscReal tol),(A,tol,&t),PetscBool ,t) 501 PetscPolymorphicFunction(MatIsSymmetric,(Mat A),(A,0,&t),PetscBool ,t) 502 extern PetscErrorCode MatIsStructurallySymmetric(Mat,PetscBool *); 503 PetscPolymorphicFunction(MatIsStructurallySymmetric,(Mat A),(A,&t),PetscBool ,t) 504 extern PetscErrorCode MatIsHermitian(Mat,PetscReal,PetscBool *); 505 PetscPolymorphicFunction(MatIsHermitian,(Mat A),(A,0,&t),PetscBool ,t) 506 extern PetscErrorCode MatIsSymmetricKnown(Mat,PetscBool *,PetscBool *); 507 extern PetscErrorCode MatIsHermitianKnown(Mat,PetscBool *,PetscBool *); 508 extern PetscErrorCode MatMissingDiagonal(Mat,PetscBool *,PetscInt *); 509 extern PetscErrorCode MatLoad(Mat, PetscViewer); 510 511 extern PetscErrorCode MatGetRowIJ(Mat,PetscInt,PetscBool ,PetscBool ,PetscInt*,PetscInt *[],PetscInt *[],PetscBool *); 512 extern PetscErrorCode MatRestoreRowIJ(Mat,PetscInt,PetscBool ,PetscBool ,PetscInt *,PetscInt *[],PetscInt *[],PetscBool *); 513 extern PetscErrorCode MatGetColumnIJ(Mat,PetscInt,PetscBool ,PetscBool ,PetscInt*,PetscInt *[],PetscInt *[],PetscBool *); 514 extern PetscErrorCode MatRestoreColumnIJ(Mat,PetscInt,PetscBool ,PetscBool ,PetscInt *,PetscInt *[],PetscInt *[],PetscBool *); 515 516 /*S 517 MatInfo - Context of matrix information, used with MatGetInfo() 518 519 In Fortran this is simply a double precision array of dimension MAT_INFO_SIZE 520 521 Level: intermediate 522 523 Concepts: matrix^nonzero information 524 525 .seealso: MatGetInfo(), MatInfoType 526 S*/ 527 typedef struct { 528 PetscLogDouble block_size; /* block size */ 529 PetscLogDouble nz_allocated,nz_used,nz_unneeded; /* number of nonzeros */ 530 PetscLogDouble memory; /* memory allocated */ 531 PetscLogDouble assemblies; /* number of matrix assemblies called */ 532 PetscLogDouble mallocs; /* number of mallocs during MatSetValues() */ 533 PetscLogDouble fill_ratio_given,fill_ratio_needed; /* fill ratio for LU/ILU */ 534 PetscLogDouble factor_mallocs; /* number of mallocs during factorization */ 535 } MatInfo; 536 537 /*E 538 MatInfoType - Indicates if you want information about the local part of the matrix, 539 the entire parallel matrix or the maximum over all the local parts. 540 541 Level: beginner 542 543 Any additions/changes here MUST also be made in include/finclude/petscmat.h 544 545 .seealso: MatGetInfo(), MatInfo 546 E*/ 547 typedef enum {MAT_LOCAL=1,MAT_GLOBAL_MAX=2,MAT_GLOBAL_SUM=3} MatInfoType; 548 extern PetscErrorCode MatGetInfo(Mat,MatInfoType,MatInfo*); 549 extern PetscErrorCode MatGetDiagonal(Mat,Vec); 550 extern PetscErrorCode MatGetRowMax(Mat,Vec,PetscInt[]); 551 extern PetscErrorCode MatGetRowMin(Mat,Vec,PetscInt[]); 552 extern PetscErrorCode MatGetRowMaxAbs(Mat,Vec,PetscInt[]); 553 extern PetscErrorCode MatGetRowMinAbs(Mat,Vec,PetscInt[]); 554 extern PetscErrorCode MatGetRowSum(Mat,Vec); 555 extern PetscErrorCode MatTranspose(Mat,MatReuse,Mat*); 556 PetscPolymorphicFunction(MatTranspose,(Mat A),(A,MAT_INITIAL_MATRIX,&t),Mat,t) 557 extern PetscErrorCode MatHermitianTranspose(Mat,MatReuse,Mat*); 558 extern PetscErrorCode MatPermute(Mat,IS,IS,Mat *); 559 PetscPolymorphicFunction(MatPermute,(Mat A,IS is1,IS is2),(A,is1,is2,&t),Mat,t) 560 extern PetscErrorCode MatDiagonalScale(Mat,Vec,Vec); 561 extern PetscErrorCode MatDiagonalSet(Mat,Vec,InsertMode); 562 extern PetscErrorCode MatEqual(Mat,Mat,PetscBool *); 563 PetscPolymorphicFunction(MatEqual,(Mat A,Mat B),(A,B,&t),PetscBool ,t) 564 extern PetscErrorCode MatMultEqual(Mat,Mat,PetscInt,PetscBool *); 565 extern PetscErrorCode MatMultAddEqual(Mat,Mat,PetscInt,PetscBool *); 566 extern PetscErrorCode MatMultTransposeEqual(Mat,Mat,PetscInt,PetscBool *); 567 extern PetscErrorCode MatMultTransposeAddEqual(Mat,Mat,PetscInt,PetscBool *); 568 569 extern PetscErrorCode MatNorm(Mat,NormType,PetscReal *); 570 PetscPolymorphicFunction(MatNorm,(Mat A,NormType t),(A,t,&n),PetscReal,n) 571 extern PetscErrorCode MatGetColumnNorms(Mat,NormType,PetscReal *); 572 extern PetscErrorCode MatZeroEntries(Mat); 573 extern PetscErrorCode MatZeroRows(Mat,PetscInt,const PetscInt [],PetscScalar,Vec,Vec); 574 extern PetscErrorCode MatZeroRowsIS(Mat,IS,PetscScalar,Vec,Vec); 575 extern PetscErrorCode MatZeroRowsStencil(Mat,PetscInt,const MatStencil [],PetscScalar,Vec,Vec); 576 extern PetscErrorCode MatZeroRowsColumns(Mat,PetscInt,const PetscInt [],PetscScalar,Vec,Vec); 577 extern PetscErrorCode MatZeroRowsColumnsIS(Mat,IS,PetscScalar,Vec,Vec); 578 579 extern PetscErrorCode MatUseScaledForm(Mat,PetscBool ); 580 extern PetscErrorCode MatScaleSystem(Mat,Vec,Vec); 581 extern PetscErrorCode MatUnScaleSystem(Mat,Vec,Vec); 582 583 extern PetscErrorCode MatGetSize(Mat,PetscInt*,PetscInt*); 584 extern PetscErrorCode MatGetLocalSize(Mat,PetscInt*,PetscInt*); 585 extern PetscErrorCode MatGetOwnershipRange(Mat,PetscInt*,PetscInt*); 586 extern PetscErrorCode MatGetOwnershipRanges(Mat,const PetscInt**); 587 extern PetscErrorCode MatGetOwnershipRangeColumn(Mat,PetscInt*,PetscInt*); 588 extern PetscErrorCode MatGetOwnershipRangesColumn(Mat,const PetscInt**); 589 590 extern PetscErrorCode MatGetSubMatrices(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 591 extern PetscErrorCode MatGetSubMatricesParallel(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 592 extern PetscErrorCode MatDestroyMatrices(PetscInt,Mat *[]); 593 extern PetscErrorCode MatGetSubMatrix(Mat,IS,IS,MatReuse,Mat *); 594 extern PetscErrorCode MatGetLocalSubMatrix(Mat,IS,IS,Mat*); 595 extern PetscErrorCode MatRestoreLocalSubMatrix(Mat,IS,IS,Mat*); 596 extern PetscErrorCode MatGetSeqNonzeroStructure(Mat,Mat*); 597 extern PetscErrorCode MatDestroySeqNonzeroStructure(Mat*); 598 599 extern PetscErrorCode MatMerge(MPI_Comm,Mat,PetscInt,MatReuse,Mat*); 600 extern PetscErrorCode MatMerge_SeqsToMPI(MPI_Comm,Mat,PetscInt,PetscInt,MatReuse,Mat*); 601 extern PetscErrorCode MatMerge_SeqsToMPISymbolic(MPI_Comm,Mat,PetscInt,PetscInt,Mat*); 602 extern PetscErrorCode MatMerge_SeqsToMPINumeric(Mat,Mat); 603 extern PetscErrorCode MatMPIAIJGetLocalMat(Mat,MatReuse,Mat*); 604 extern PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat,MatReuse,IS*,IS*,Mat*); 605 extern PetscErrorCode MatGetBrowsOfAcols(Mat,Mat,MatReuse,IS*,IS*,PetscInt*,Mat*); 606 extern PetscErrorCode MatGetBrowsOfAoCols(Mat,Mat,MatReuse,PetscInt**,PetscInt**,MatScalar**,Mat*); 607 #if defined (PETSC_USE_CTABLE) 608 #include "petscctable.h" 609 extern PetscErrorCode MatGetCommunicationStructs(Mat, Vec *, PetscTable *, VecScatter *); 610 #else 611 extern PetscErrorCode MatGetCommunicationStructs(Mat, Vec *, PetscInt *[], VecScatter *); 612 #endif 613 extern PetscErrorCode MatGetGhosts(Mat, PetscInt *,const PetscInt *[]); 614 615 extern PetscErrorCode MatIncreaseOverlap(Mat,PetscInt,IS[],PetscInt); 616 617 extern PetscErrorCode MatMatMult(Mat,Mat,MatReuse,PetscReal,Mat*); 618 extern PetscErrorCode MatMatMultSymbolic(Mat,Mat,PetscReal,Mat*); 619 extern PetscErrorCode MatMatMultNumeric(Mat,Mat,Mat); 620 621 extern PetscErrorCode MatPtAP(Mat,Mat,MatReuse,PetscReal,Mat*); 622 extern PetscErrorCode MatPtAPSymbolic(Mat,Mat,PetscReal,Mat*); 623 extern PetscErrorCode MatPtAPNumeric(Mat,Mat,Mat); 624 625 extern PetscErrorCode MatMatMultTranspose(Mat,Mat,MatReuse,PetscReal,Mat*); 626 extern PetscErrorCode MatMatMultTransposeSymbolic(Mat,Mat,PetscReal,Mat*); 627 extern PetscErrorCode MatMatMultTransposeNumeric(Mat,Mat,Mat); 628 629 extern PetscErrorCode MatAXPY(Mat,PetscScalar,Mat,MatStructure); 630 extern PetscErrorCode MatAYPX(Mat,PetscScalar,Mat,MatStructure); 631 632 extern PetscErrorCode MatScale(Mat,PetscScalar); 633 extern PetscErrorCode MatShift(Mat,PetscScalar); 634 635 extern PetscErrorCode MatSetLocalToGlobalMapping(Mat,ISLocalToGlobalMapping,ISLocalToGlobalMapping); 636 extern PetscErrorCode MatSetLocalToGlobalMappingBlock(Mat,ISLocalToGlobalMapping,ISLocalToGlobalMapping); 637 extern PetscErrorCode MatGetLocalToGlobalMapping(Mat,ISLocalToGlobalMapping*,ISLocalToGlobalMapping*); 638 extern PetscErrorCode MatGetLocalToGlobalMappingBlock(Mat,ISLocalToGlobalMapping*,ISLocalToGlobalMapping*); 639 extern PetscErrorCode MatZeroRowsLocal(Mat,PetscInt,const PetscInt [],PetscScalar,Vec,Vec); 640 extern PetscErrorCode MatZeroRowsLocalIS(Mat,IS,PetscScalar,Vec,Vec); 641 extern PetscErrorCode MatZeroRowsColumnsLocal(Mat,PetscInt,const PetscInt [],PetscScalar,Vec,Vec); 642 extern PetscErrorCode MatZeroRowsColumnsLocalIS(Mat,IS,PetscScalar,Vec,Vec); 643 extern PetscErrorCode MatSetValuesLocal(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 644 extern PetscErrorCode MatSetValuesBlockedLocal(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 645 646 extern PetscErrorCode MatStashSetInitialSize(Mat,PetscInt,PetscInt); 647 extern PetscErrorCode MatStashGetInfo(Mat,PetscInt*,PetscInt*,PetscInt*,PetscInt*); 648 649 extern PetscErrorCode MatInterpolate(Mat,Vec,Vec); 650 extern PetscErrorCode MatInterpolateAdd(Mat,Vec,Vec,Vec); 651 PetscPolymorphicSubroutine(MatInterpolateAdd,(Mat A,Vec x,Vec y),(A,x,y,y)) 652 extern PetscErrorCode MatRestrict(Mat,Vec,Vec); 653 extern PetscErrorCode MatGetVecs(Mat,Vec*,Vec*); 654 extern PetscErrorCode MatGetRedundantMatrix(Mat,PetscInt,MPI_Comm,PetscInt,MatReuse,Mat*); 655 extern PetscErrorCode MatGetMultiProcBlock(Mat,MPI_Comm,Mat*); 656 extern PetscErrorCode MatFindZeroDiagonals(Mat,IS*); 657 658 /*MC 659 MatSetValue - Set a single entry into a matrix. 660 661 Not collective 662 663 Input Parameters: 664 + m - the matrix 665 . row - the row location of the entry 666 . col - the column location of the entry 667 . value - the value to insert 668 - mode - either INSERT_VALUES or ADD_VALUES 669 670 Notes: 671 For efficiency one should use MatSetValues() and set several or many 672 values simultaneously if possible. 673 674 Level: beginner 675 676 .seealso: MatSetValues(), MatSetValueLocal() 677 M*/ 678 PETSC_STATIC_INLINE PetscErrorCode MatSetValue(Mat v,PetscInt i,PetscInt j,PetscScalar va,InsertMode mode) {return MatSetValues(v,1,&i,1,&j,&va,mode);} 679 680 PETSC_STATIC_INLINE PetscErrorCode MatGetValue(Mat v,PetscInt i,PetscInt j,PetscScalar *va) {return MatGetValues(v,1,&i,1,&j,va);} 681 682 PETSC_STATIC_INLINE PetscErrorCode MatSetValueLocal(Mat v,PetscInt i,PetscInt j,PetscScalar va,InsertMode mode) {return MatSetValuesLocal(v,1,&i,1,&j,&va,mode);} 683 684 /*MC 685 MatPreallocateInitialize - Begins the block of code that will count the number of nonzeros per 686 row in a matrix providing the data that one can use to correctly preallocate the matrix. 687 688 Synopsis: 689 PetscErrorCode MatPreallocateInitialize(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz) 690 691 Collective on MPI_Comm 692 693 Input Parameters: 694 + comm - the communicator that will share the eventually allocated matrix 695 . nrows - the number of LOCAL rows in the matrix 696 - ncols - the number of LOCAL columns in the matrix 697 698 Output Parameters: 699 + dnz - the array that will be passed to the matrix preallocation routines 700 - ozn - the other array passed to the matrix preallocation routines 701 702 703 Level: intermediate 704 705 Notes: 706 See the <A href="../../docs/manual.pdf#nameddest=ch_performance">Hints for Performance Improvment</A> chapter in the users manual for more details. 707 708 Do not malloc or free dnz and onz, that is handled internally by these routines 709 710 Use MatPreallocateInitializeSymmetric() for symmetric matrices (MPISBAIJ matrices) 711 712 This is a MACRO not a function because it has a leading { that is closed by PetscPreallocateFinalize(). 713 714 Concepts: preallocation^Matrix 715 716 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSet(), MatPreallocateSetLocal(), 717 MatPreallocateInitializeSymmetric(), MatPreallocateSymmetricSetLocal() 718 M*/ 719 #define MatPreallocateInitialize(comm,nrows,ncols,dnz,onz) 0; \ 720 { \ 721 PetscErrorCode _4_ierr; PetscInt __nrows = (nrows),__ctmp = (ncols),__rstart,__start,__end; \ 722 _4_ierr = PetscMalloc2(__nrows,PetscInt,&dnz,__nrows,PetscInt,&onz);CHKERRQ(_4_ierr); \ 723 _4_ierr = PetscMemzero(dnz,__nrows*sizeof(PetscInt));CHKERRQ(_4_ierr);\ 724 _4_ierr = PetscMemzero(onz,__nrows*sizeof(PetscInt));CHKERRQ(_4_ierr);\ 725 _4_ierr = MPI_Scan(&__ctmp,&__end,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(_4_ierr); __start = __end - __ctmp;\ 726 _4_ierr = MPI_Scan(&__nrows,&__rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(_4_ierr); __rstart = __rstart - __nrows; 727 728 /*MC 729 MatPreallocateSymmetricInitialize - Begins the block of code that will count the number of nonzeros per 730 row in a matrix providing the data that one can use to correctly preallocate the matrix. 731 732 Synopsis: 733 PetscErrorCode MatPreallocateSymmetricInitialize(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz) 734 735 Collective on MPI_Comm 736 737 Input Parameters: 738 + comm - the communicator that will share the eventually allocated matrix 739 . nrows - the number of LOCAL rows in the matrix 740 - ncols - the number of LOCAL columns in the matrix 741 742 Output Parameters: 743 + dnz - the array that will be passed to the matrix preallocation routines 744 - ozn - the other array passed to the matrix preallocation routines 745 746 747 Level: intermediate 748 749 Notes: 750 See the <A href="../../docs/manual.pdf#nameddest=ch_performance">Hints for Performance Improvment</A> chapter in the users manual for more details. 751 752 Do not malloc or free dnz and onz, that is handled internally by these routines 753 754 This is a MACRO not a function because it has a leading { that is closed by PetscPreallocateFinalize(). 755 756 Concepts: preallocation^Matrix 757 758 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSet(), MatPreallocateSetLocal(), 759 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocal() 760 M*/ 761 #define MatPreallocateSymmetricInitialize(comm,nrows,ncols,dnz,onz) 0; \ 762 { \ 763 PetscErrorCode _4_ierr; PetscInt __nrows = (nrows),__ctmp = (ncols),__rstart,__end; \ 764 _4_ierr = PetscMalloc2(__nrows,PetscInt,&dnz,__nrows,PetscInt,&onz);CHKERRQ(_4_ierr); \ 765 _4_ierr = PetscMemzero(dnz,__nrows*sizeof(PetscInt));CHKERRQ(_4_ierr);\ 766 _4_ierr = PetscMemzero(onz,__nrows*sizeof(PetscInt));CHKERRQ(_4_ierr);\ 767 _4_ierr = MPI_Scan(&__ctmp,&__end,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(_4_ierr);\ 768 _4_ierr = MPI_Scan(&__nrows,&__rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(_4_ierr); __rstart = __rstart - __nrows; 769 770 /*MC 771 MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be 772 inserted using a local number of the rows and columns 773 774 Synopsis: 775 PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 776 777 Not Collective 778 779 Input Parameters: 780 + map - the row mapping from local numbering to global numbering 781 . nrows - the number of rows indicated 782 . rows - the indices of the rows 783 . cmap - the column mapping from local to global numbering 784 . ncols - the number of columns in the matrix 785 . cols - the columns indicated 786 . dnz - the array that will be passed to the matrix preallocation routines 787 - ozn - the other array passed to the matrix preallocation routines 788 789 790 Level: intermediate 791 792 Notes: 793 See the <A href="../../docs/manual.pdf#nameddest=ch_performance">Hints for Performance Improvment</A> chapter in the users manual for more details. 794 795 Do not malloc or free dnz and onz, that is handled internally by these routines 796 797 Concepts: preallocation^Matrix 798 799 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSet(), MatPreallocateInitialize(), 800 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocal() 801 M*/ 802 #define MatPreallocateSetLocal(rmap,nrows,rows,cmap,ncols,cols,dnz,onz) 0; \ 803 {\ 804 PetscInt __l;\ 805 _4_ierr = ISLocalToGlobalMappingApply(rmap,nrows,rows,rows);CHKERRQ(_4_ierr);\ 806 _4_ierr = ISLocalToGlobalMappingApply(cmap,ncols,cols,cols);CHKERRQ(_4_ierr);\ 807 for (__l=0;__l<nrows;__l++) {\ 808 _4_ierr = MatPreallocateSet((rows)[__l],ncols,cols,dnz,onz);CHKERRQ(_4_ierr);\ 809 }\ 810 } 811 812 /*MC 813 MatPreallocateSymmetricSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be 814 inserted using a local number of the rows and columns 815 816 Synopsis: 817 PetscErrorCode MatPreallocateSymmetricSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 818 819 Not Collective 820 821 Input Parameters: 822 + map - the mapping between local numbering and global numbering 823 . nrows - the number of rows indicated 824 . rows - the indices of the rows 825 . ncols - the number of columns in the matrix 826 . cols - the columns indicated 827 . dnz - the array that will be passed to the matrix preallocation routines 828 - ozn - the other array passed to the matrix preallocation routines 829 830 831 Level: intermediate 832 833 Notes: 834 See the <A href="../../docs/manual.pdf#nameddest=ch_performance">Hints for Performance Improvment</A> chapter in the users manual for more details. 835 836 Do not malloc or free dnz and onz that is handled internally by these routines 837 838 Concepts: preallocation^Matrix 839 840 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSet(), MatPreallocateInitialize(), 841 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocal(), MatPreallocateSetLocal() 842 M*/ 843 #define MatPreallocateSymmetricSetLocal(map,nrows,rows,ncols,cols,dnz,onz) 0;\ 844 {\ 845 PetscInt __l;\ 846 _4_ierr = ISLocalToGlobalMappingApply(map,nrows,rows,rows);CHKERRQ(_4_ierr);\ 847 _4_ierr = ISLocalToGlobalMappingApply(map,ncols,cols,cols);CHKERRQ(_4_ierr);\ 848 for (__l=0;__l<nrows;__l++) {\ 849 _4_ierr = MatPreallocateSymmetricSet((rows)[__l],ncols,cols,dnz,onz);CHKERRQ(_4_ierr);\ 850 }\ 851 } 852 853 /*MC 854 MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be 855 inserted using a local number of the rows and columns 856 857 Synopsis: 858 PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 859 860 Not Collective 861 862 Input Parameters: 863 + row - the row 864 . ncols - the number of columns in the matrix 865 - cols - the columns indicated 866 867 Output Parameters: 868 + dnz - the array that will be passed to the matrix preallocation routines 869 - ozn - the other array passed to the matrix preallocation routines 870 871 872 Level: intermediate 873 874 Notes: 875 See the <A href="../../docs/manual.pdf#nameddest=ch_performance">Hints for Performance Improvment</A> chapter in the users manual for more details. 876 877 Do not malloc or free dnz and onz that is handled internally by these routines 878 879 This is a MACRO not a function because it uses variables declared in MatPreallocateInitialize(). 880 881 Concepts: preallocation^Matrix 882 883 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSet(), MatPreallocateInitialize(), 884 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocal(), MatPreallocateSetLocal() 885 M*/ 886 #define MatPreallocateSet(row,nc,cols,dnz,onz) 0;\ 887 { PetscInt __i; \ 888 if (row < __rstart) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Trying to set preallocation for row %D less than first local row %D",row,__rstart);\ 889 if (row >= __rstart+__nrows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Trying to set preallocation for row %D greater than last local row %D",row,__rstart+__nrows-1);\ 890 for (__i=0; __i<nc; __i++) {\ 891 if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \ 892 else dnz[row - __rstart]++;\ 893 }\ 894 } 895 896 /*MC 897 MatPreallocateSymmetricSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be 898 inserted using a local number of the rows and columns 899 900 Synopsis: 901 PetscErrorCode MatPreallocateSymmetricSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 902 903 Not Collective 904 905 Input Parameters: 906 + nrows - the number of rows indicated 907 . rows - the indices of the rows 908 . ncols - the number of columns in the matrix 909 . cols - the columns indicated 910 . dnz - the array that will be passed to the matrix preallocation routines 911 - ozn - the other array passed to the matrix preallocation routines 912 913 914 Level: intermediate 915 916 Notes: 917 See the <A href="../../docs/manual.pdf#nameddest=ch_performance">Hints for Performance Improvment</A> chapter in the users manual for more details. 918 919 Do not malloc or free dnz and onz that is handled internally by these routines 920 921 This is a MACRO not a function because it uses variables declared in MatPreallocateInitialize(). 922 923 Concepts: preallocation^Matrix 924 925 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSet(), MatPreallocateInitialize(), 926 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocal(), MatPreallocateSetLocal() 927 M*/ 928 #define MatPreallocateSymmetricSet(row,nc,cols,dnz,onz) 0;\ 929 { PetscInt __i; \ 930 for (__i=0; __i<nc; __i++) {\ 931 if (cols[__i] >= __end) onz[row - __rstart]++; \ 932 else if (cols[__i] >= row) dnz[row - __rstart]++;\ 933 }\ 934 } 935 936 /*MC 937 MatPreallocateLocation - An alternative to MatPreallocationSet() that puts the nonzero locations into the matrix if it exists 938 939 Synopsis: 940 PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz) 941 942 Not Collective 943 944 Input Parameters: 945 . A - matrix 946 . row - row where values exist (must be local to this process) 947 . ncols - number of columns 948 . cols - columns with nonzeros 949 . dnz - the array that will be passed to the matrix preallocation routines 950 - ozn - the other array passed to the matrix preallocation routines 951 952 953 Level: intermediate 954 955 Notes: 956 See the <A href="../../docs/manual.pdf#nameddest=ch_performance">Hints for Performance Improvment</A> chapter in the users manual for more details. 957 958 Do not malloc or free dnz and onz that is handled internally by these routines 959 960 This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines. 961 962 Concepts: preallocation^Matrix 963 964 .seealso: MatPreallocateInitialize(), MatPreallocateSet(), MatPreallocateSymmetricSet(), MatPreallocateSetLocal(), 965 MatPreallocateSymmetricInitialize(), MatPreallocateSymmetricSetLocal() 966 M*/ 967 #define MatPreallocateLocation(A,row,ncols,cols,dnz,onz) 0;if (A) {ierr = MatSetValues(A,1,&row,ncols,cols,PETSC_NULL,INSERT_VALUES);CHKERRQ(ierr);} else {ierr = MatPreallocateSet(row,ncols,cols,dnz,onz);CHKERRQ(ierr);} 968 969 970 /*MC 971 MatPreallocateFinalize - Ends the block of code that will count the number of nonzeros per 972 row in a matrix providing the data that one can use to correctly preallocate the matrix. 973 974 Synopsis: 975 PetscErrorCode MatPreallocateFinalize(PetscInt *dnz, PetscInt *onz) 976 977 Collective on MPI_Comm 978 979 Input Parameters: 980 + dnz - the array that was be passed to the matrix preallocation routines 981 - ozn - the other array passed to the matrix preallocation routines 982 983 984 Level: intermediate 985 986 Notes: 987 See the <A href="../../docs/manual.pdf#nameddest=ch_performance">Hints for Performance Improvment</A> chapter in the users manual for more details. 988 989 Do not malloc or free dnz and onz that is handled internally by these routines 990 991 This is a MACRO not a function because it closes the { started in MatPreallocateInitialize(). 992 993 Concepts: preallocation^Matrix 994 995 .seealso: MatPreallocateInitialize(), MatPreallocateSet(), MatPreallocateSymmetricSet(), MatPreallocateSetLocal(), 996 MatPreallocateSymmetricInitialize(), MatPreallocateSymmetricSetLocal() 997 M*/ 998 #define MatPreallocateFinalize(dnz,onz) 0;_4_ierr = PetscFree2(dnz,onz);CHKERRQ(_4_ierr);} 999 1000 1001 1002 /* Routines unique to particular data structures */ 1003 extern PetscErrorCode MatShellGetContext(Mat,void **); 1004 PetscPolymorphicFunction(MatShellGetContext,(Mat A),(A,&t),void*,t) 1005 1006 extern PetscErrorCode MatInodeAdjustForInodes(Mat,IS*,IS*); 1007 extern PetscErrorCode MatInodeGetInodeSizes(Mat,PetscInt *,PetscInt *[],PetscInt *); 1008 1009 extern PetscErrorCode MatSeqAIJSetColumnIndices(Mat,PetscInt[]); 1010 extern PetscErrorCode MatSeqBAIJSetColumnIndices(Mat,PetscInt[]); 1011 extern PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*); 1012 extern PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*); 1013 extern PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*); 1014 1015 #define MAT_SKIP_ALLOCATION -4 1016 1017 extern PetscErrorCode MatSeqBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[]); 1018 PetscPolymorphicSubroutine(MatSeqBAIJSetPreallocation,(Mat A,PetscInt bs,const PetscInt nnz[]),(A,bs,0,nnz)) 1019 extern PetscErrorCode MatSeqSBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[]); 1020 PetscPolymorphicSubroutine(MatSeqSBAIJSetPreallocation,(Mat A,PetscInt bs,const PetscInt nnz[]),(A,bs,0,nnz)) 1021 extern PetscErrorCode MatSeqAIJSetPreallocation(Mat,PetscInt,const PetscInt[]); 1022 PetscPolymorphicSubroutine(MatSeqAIJSetPreallocation,(Mat A,const PetscInt nnz[]),(A,0,nnz)) 1023 1024 extern PetscErrorCode MatMPIBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1025 PetscPolymorphicSubroutine(MatMPIBAIJSetPreallocation,(Mat A,PetscInt bs,const PetscInt nnz[],const PetscInt onz[]),(A,bs,0,nnz,0,onz)) 1026 extern PetscErrorCode MatMPISBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1027 extern PetscErrorCode MatMPIAIJSetPreallocation(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1028 extern PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat,const PetscInt [],const PetscInt [],const PetscScalar []); 1029 extern PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 1030 extern PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat,const PetscInt[],const PetscInt[],const PetscScalar[]); 1031 extern PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 1032 extern PetscErrorCode MatMPIAdjSetPreallocation(Mat,PetscInt[],PetscInt[],PetscInt[]); 1033 extern PetscErrorCode MatMPIDenseSetPreallocation(Mat,PetscScalar[]); 1034 extern PetscErrorCode MatSeqDenseSetPreallocation(Mat,PetscScalar[]); 1035 extern PetscErrorCode MatMPIAIJGetSeqAIJ(Mat,Mat*,Mat*,PetscInt*[]); 1036 extern PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat,Mat*,Mat*,PetscInt*[]); 1037 extern PetscErrorCode MatAdicSetLocalFunction(Mat,void (*)(void)); 1038 1039 extern PetscErrorCode MatSeqDenseSetLDA(Mat,PetscInt); 1040 extern PetscErrorCode MatDenseGetLocalMatrix(Mat,Mat*); 1041 1042 extern PetscErrorCode MatStoreValues(Mat); 1043 extern PetscErrorCode MatRetrieveValues(Mat); 1044 1045 extern PetscErrorCode MatDAADSetCtx(Mat,void*); 1046 1047 extern PetscErrorCode MatFindNonzeroRows(Mat,IS*); 1048 /* 1049 These routines are not usually accessed directly, rather solving is 1050 done through the KSP and PC interfaces. 1051 */ 1052 1053 /*E 1054 MatOrderingType - String with the name of a PETSc matrix ordering or the creation function 1055 with an optional dynamic library name, for example 1056 http://www.mcs.anl.gov/petsc/lib.a:orderingcreate() 1057 1058 Level: beginner 1059 1060 Cannot use const because the PC objects manipulate the string 1061 1062 .seealso: MatGetOrdering() 1063 E*/ 1064 #define MatOrderingType char* 1065 #define MATORDERINGNATURAL "natural" 1066 #define MATORDERINGND "nd" 1067 #define MATORDERING1WD "1wd" 1068 #define MATORDERINGRCM "rcm" 1069 #define MATORDERINGQMD "qmd" 1070 #define MATORDERINGROWLENGTH "rowlength" 1071 #define MATORDERINGDSC_ND "dsc_nd" /* these three are only for DSCPACK, see its documentation for details */ 1072 #define MATORDERINGDSC_MMD "dsc_mmd" 1073 #define MATORDERINGDSC_MDF "dsc_mdf" 1074 #define MATORDERINGAMD "amd" /* only works if UMFPACK is installed with PETSc */ 1075 1076 extern PetscErrorCode MatGetOrdering(Mat,const MatOrderingType,IS*,IS*); 1077 extern PetscErrorCode MatGetOrderingList(PetscFList *list); 1078 extern PetscErrorCode MatOrderingRegister(const char[],const char[],const char[],PetscErrorCode(*)(Mat,const MatOrderingType,IS*,IS*)); 1079 1080 /*MC 1081 MatOrderingRegisterDynamic - Adds a new sparse matrix ordering to the matrix package. 1082 1083 Synopsis: 1084 PetscErrorCode MatOrderingRegisterDynamic(const char *name_ordering,const char *path,const char *name_create,PetscErrorCode (*routine_create)(MatOrdering)) 1085 1086 Not Collective 1087 1088 Input Parameters: 1089 + sname - name of ordering (for example MATORDERINGND) 1090 . path - location of library where creation routine is 1091 . name - name of function that creates the ordering type,a string 1092 - function - function pointer that creates the ordering 1093 1094 Level: developer 1095 1096 If dynamic libraries are used, then the fourth input argument (function) 1097 is ignored. 1098 1099 Sample usage: 1100 .vb 1101 MatOrderingRegisterDynamic("my_order",/home/username/my_lib/lib/libO/solaris/mylib.a, 1102 "MyOrder",MyOrder); 1103 .ve 1104 1105 Then, your partitioner can be chosen with the procedural interface via 1106 $ MatOrderingSetType(part,"my_order) 1107 or at runtime via the option 1108 $ -pc_factor_mat_ordering_type my_order 1109 1110 ${PETSC_ARCH} occuring in pathname will be replaced with appropriate values. 1111 1112 .keywords: matrix, ordering, register 1113 1114 .seealso: MatOrderingRegisterDestroy(), MatOrderingRegisterAll() 1115 M*/ 1116 #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1117 #define MatOrderingRegisterDynamic(a,b,c,d) MatOrderingRegister(a,b,c,0) 1118 #else 1119 #define MatOrderingRegisterDynamic(a,b,c,d) MatOrderingRegister(a,b,c,d) 1120 #endif 1121 1122 extern PetscErrorCode MatOrderingRegisterDestroy(void); 1123 extern PetscErrorCode MatOrderingRegisterAll(const char[]); 1124 extern PetscBool MatOrderingRegisterAllCalled; 1125 extern PetscFList MatOrderingList; 1126 1127 extern PetscErrorCode MatReorderForNonzeroDiagonal(Mat,PetscReal,IS,IS); 1128 1129 /*S 1130 MatFactorShiftType - Numeric Shift. 1131 1132 Level: beginner 1133 1134 S*/ 1135 typedef enum {MAT_SHIFT_NONE,MAT_SHIFT_NONZERO,MAT_SHIFT_POSITIVE_DEFINITE,MAT_SHIFT_INBLOCKS} MatFactorShiftType; 1136 extern const char *MatFactorShiftTypes[]; 1137 1138 /*S 1139 MatFactorInfo - Data passed into the matrix factorization routines 1140 1141 In Fortran these are simply double precision arrays of size MAT_FACTORINFO_SIZE, that is use 1142 $ MatFactorInfo info(MAT_FACTORINFO_SIZE) 1143 1144 Notes: These are not usually directly used by users, instead use PC type of LU, ILU, CHOLESKY or ICC. 1145 1146 You can use MatFactorInfoInitialize() to set default values. 1147 1148 Level: developer 1149 1150 .seealso: MatLUFactorSymbolic(), MatILUFactorSymbolic(), MatCholeskyFactorSymbolic(), MatICCFactorSymbolic(), MatICCFactor(), 1151 MatFactorInfoInitialize() 1152 1153 S*/ 1154 typedef struct { 1155 PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */ 1156 PetscReal usedt; 1157 PetscReal dt; /* drop tolerance */ 1158 PetscReal dtcol; /* tolerance for pivoting */ 1159 PetscReal dtcount; /* maximum nonzeros to be allowed per row */ 1160 PetscReal fill; /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */ 1161 PetscReal levels; /* ICC/ILU(levels) */ 1162 PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 1163 factorization may be faster if do not pivot */ 1164 PetscReal zeropivot; /* pivot is called zero if less than this */ 1165 PetscReal shifttype; /* type of shift added to matrix factor to prevent zero pivots */ 1166 PetscReal shiftamount; /* how large the shift is */ 1167 } MatFactorInfo; 1168 1169 extern PetscErrorCode MatFactorInfoInitialize(MatFactorInfo*); 1170 extern PetscErrorCode MatCholeskyFactor(Mat,IS,const MatFactorInfo*); 1171 extern PetscErrorCode MatCholeskyFactorSymbolic(Mat,Mat,IS,const MatFactorInfo*); 1172 extern PetscErrorCode MatCholeskyFactorNumeric(Mat,Mat,const MatFactorInfo*); 1173 extern PetscErrorCode MatLUFactor(Mat,IS,IS,const MatFactorInfo*); 1174 extern PetscErrorCode MatILUFactor(Mat,IS,IS,const MatFactorInfo*); 1175 extern PetscErrorCode MatLUFactorSymbolic(Mat,Mat,IS,IS,const MatFactorInfo*); 1176 extern PetscErrorCode MatILUFactorSymbolic(Mat,Mat,IS,IS,const MatFactorInfo*); 1177 extern PetscErrorCode MatICCFactorSymbolic(Mat,Mat,IS,const MatFactorInfo*); 1178 extern PetscErrorCode MatICCFactor(Mat,IS,const MatFactorInfo*); 1179 extern PetscErrorCode MatLUFactorNumeric(Mat,Mat,const MatFactorInfo*); 1180 extern PetscErrorCode MatGetInertia(Mat,PetscInt*,PetscInt*,PetscInt*); 1181 extern PetscErrorCode MatSolve(Mat,Vec,Vec); 1182 extern PetscErrorCode MatForwardSolve(Mat,Vec,Vec); 1183 extern PetscErrorCode MatBackwardSolve(Mat,Vec,Vec); 1184 extern PetscErrorCode MatSolveAdd(Mat,Vec,Vec,Vec); 1185 extern PetscErrorCode MatSolveTranspose(Mat,Vec,Vec); 1186 extern PetscErrorCode MatSolveTransposeAdd(Mat,Vec,Vec,Vec); 1187 extern PetscErrorCode MatSolves(Mat,Vecs,Vecs); 1188 1189 extern PetscErrorCode MatSetUnfactored(Mat); 1190 1191 /*E 1192 MatSORType - What type of (S)SOR to perform 1193 1194 Level: beginner 1195 1196 May be bitwise ORd together 1197 1198 Any additions/changes here MUST also be made in include/finclude/petscmat.h 1199 1200 MatSORType may be bitwise ORd together, so do not change the numbers 1201 1202 .seealso: MatSOR() 1203 E*/ 1204 typedef enum {SOR_FORWARD_SWEEP=1,SOR_BACKWARD_SWEEP=2,SOR_SYMMETRIC_SWEEP=3, 1205 SOR_LOCAL_FORWARD_SWEEP=4,SOR_LOCAL_BACKWARD_SWEEP=8, 1206 SOR_LOCAL_SYMMETRIC_SWEEP=12,SOR_ZERO_INITIAL_GUESS=16, 1207 SOR_EISENSTAT=32,SOR_APPLY_UPPER=64,SOR_APPLY_LOWER=128} MatSORType; 1208 extern PetscErrorCode MatSOR(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 1209 1210 /* 1211 These routines are for efficiently computing Jacobians via finite differences. 1212 */ 1213 1214 /*E 1215 MatColoringType - String with the name of a PETSc matrix coloring or the creation function 1216 with an optional dynamic library name, for example 1217 http://www.mcs.anl.gov/petsc/lib.a:coloringcreate() 1218 1219 Level: beginner 1220 1221 .seealso: MatGetColoring() 1222 E*/ 1223 #define MatColoringType char* 1224 #define MATCOLORINGNATURAL "natural" 1225 #define MATCOLORINGSL "sl" 1226 #define MATCOLORINGLF "lf" 1227 #define MATCOLORINGID "id" 1228 1229 extern PetscErrorCode MatGetColoring(Mat,const MatColoringType,ISColoring*); 1230 extern PetscErrorCode MatColoringRegister(const char[],const char[],const char[],PetscErrorCode(*)(Mat,MatColoringType,ISColoring *)); 1231 1232 /*MC 1233 MatColoringRegisterDynamic - Adds a new sparse matrix coloring to the 1234 matrix package. 1235 1236 Synopsis: 1237 PetscErrorCode MatColoringRegisterDynamic(const char *name_coloring,const char *path,const char *name_create,PetscErrorCode (*routine_create)(MatColoring)) 1238 1239 Not Collective 1240 1241 Input Parameters: 1242 + sname - name of Coloring (for example MATCOLORINGSL) 1243 . path - location of library where creation routine is 1244 . name - name of function that creates the Coloring type, a string 1245 - function - function pointer that creates the coloring 1246 1247 Level: developer 1248 1249 If dynamic libraries are used, then the fourth input argument (function) 1250 is ignored. 1251 1252 Sample usage: 1253 .vb 1254 MatColoringRegisterDynamic("my_color",/home/username/my_lib/lib/libO/solaris/mylib.a, 1255 "MyColor",MyColor); 1256 .ve 1257 1258 Then, your partitioner can be chosen with the procedural interface via 1259 $ MatColoringSetType(part,"my_color") 1260 or at runtime via the option 1261 $ -mat_coloring_type my_color 1262 1263 $PETSC_ARCH occuring in pathname will be replaced with appropriate values. 1264 1265 .keywords: matrix, Coloring, register 1266 1267 .seealso: MatColoringRegisterDestroy(), MatColoringRegisterAll() 1268 M*/ 1269 #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1270 #define MatColoringRegisterDynamic(a,b,c,d) MatColoringRegister(a,b,c,0) 1271 #else 1272 #define MatColoringRegisterDynamic(a,b,c,d) MatColoringRegister(a,b,c,d) 1273 #endif 1274 1275 extern PetscBool MatColoringRegisterAllCalled; 1276 1277 extern PetscErrorCode MatColoringRegisterAll(const char[]); 1278 extern PetscErrorCode MatColoringRegisterDestroy(void); 1279 extern PetscErrorCode MatColoringPatch(Mat,PetscInt,PetscInt,ISColoringValue[],ISColoring*); 1280 1281 /*S 1282 MatFDColoring - Object for computing a sparse Jacobian via finite differences 1283 and coloring 1284 1285 Level: beginner 1286 1287 Concepts: coloring, sparse Jacobian, finite differences 1288 1289 .seealso: MatFDColoringCreate() 1290 S*/ 1291 typedef struct _p_MatFDColoring* MatFDColoring; 1292 1293 extern PetscErrorCode MatFDColoringCreate(Mat,ISColoring,MatFDColoring *); 1294 extern PetscErrorCode MatFDColoringDestroy(MatFDColoring*); 1295 extern PetscErrorCode MatFDColoringView(MatFDColoring,PetscViewer); 1296 extern PetscErrorCode MatFDColoringSetFunction(MatFDColoring,PetscErrorCode (*)(void),void*); 1297 extern PetscErrorCode MatFDColoringGetFunction(MatFDColoring,PetscErrorCode (**)(void),void**); 1298 extern PetscErrorCode MatFDColoringSetParameters(MatFDColoring,PetscReal,PetscReal); 1299 extern PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring); 1300 extern PetscErrorCode MatFDColoringApply(Mat,MatFDColoring,Vec,MatStructure*,void *); 1301 extern PetscErrorCode MatFDColoringApplyTS(Mat,MatFDColoring,PetscReal,Vec,MatStructure*,void *); 1302 extern PetscErrorCode MatFDColoringSetF(MatFDColoring,Vec); 1303 extern PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring,PetscInt*,PetscInt*[]); 1304 /* 1305 These routines are for partitioning matrices: currently used only 1306 for adjacency matrix, MatCreateMPIAdj(). 1307 */ 1308 1309 /*S 1310 MatPartitioning - Object for managing the partitioning of a matrix or graph 1311 1312 Level: beginner 1313 1314 Concepts: partitioning 1315 1316 .seealso: MatPartitioningCreate(), MatPartitioningType 1317 S*/ 1318 typedef struct _p_MatPartitioning* MatPartitioning; 1319 1320 /*E 1321 MatPartitioningType - String with the name of a PETSc matrix partitioning or the creation function 1322 with an optional dynamic library name, for example 1323 http://www.mcs.anl.gov/petsc/lib.a:partitioningcreate() 1324 1325 Level: beginner 1326 1327 .seealso: MatPartitioningCreate(), MatPartitioning 1328 E*/ 1329 #define MatPartitioningType char* 1330 #define MATPARTITIONINGCURRENT "current" 1331 #define MATPARTITIONINGSQUARE "square" 1332 #define MATPARTITIONINGPARMETIS "parmetis" 1333 #define MATPARTITIONINGCHACO "chaco" 1334 #define MATPARTITIONINGJOSTLE "jostle" 1335 #define MATPARTITIONINGPARTY "party" 1336 #define MATPARTITIONINGSCOTCH "scotch" 1337 1338 1339 extern PetscErrorCode MatPartitioningCreate(MPI_Comm,MatPartitioning*); 1340 extern PetscErrorCode MatPartitioningSetType(MatPartitioning,const MatPartitioningType); 1341 extern PetscErrorCode MatPartitioningSetNParts(MatPartitioning,PetscInt); 1342 extern PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning,Mat); 1343 extern PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning,const PetscInt[]); 1344 extern PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning,const PetscReal []); 1345 extern PetscErrorCode MatPartitioningApply(MatPartitioning,IS*); 1346 extern PetscErrorCode MatPartitioningDestroy(MatPartitioning*); 1347 1348 extern PetscErrorCode MatPartitioningRegister(const char[],const char[],const char[],PetscErrorCode (*)(MatPartitioning)); 1349 1350 /*MC 1351 MatPartitioningRegisterDynamic - Adds a new sparse matrix partitioning to the 1352 matrix package. 1353 1354 Synopsis: 1355 PetscErrorCode MatPartitioningRegisterDynamic(const char *name_partitioning,const char *path,const char *name_create,PetscErrorCode (*routine_create)(MatPartitioning)) 1356 1357 Not Collective 1358 1359 Input Parameters: 1360 + sname - name of partitioning (for example MATPARTITIONINGCURRENT) or parmetis 1361 . path - location of library where creation routine is 1362 . name - name of function that creates the partitioning type, a string 1363 - function - function pointer that creates the partitioning type 1364 1365 Level: developer 1366 1367 If dynamic libraries are used, then the fourth input argument (function) 1368 is ignored. 1369 1370 Sample usage: 1371 .vb 1372 MatPartitioningRegisterDynamic("my_part",/home/username/my_lib/lib/libO/solaris/mylib.a, 1373 "MyPartCreate",MyPartCreate); 1374 .ve 1375 1376 Then, your partitioner can be chosen with the procedural interface via 1377 $ MatPartitioningSetType(part,"my_part") 1378 or at runtime via the option 1379 $ -mat_partitioning_type my_part 1380 1381 $PETSC_ARCH occuring in pathname will be replaced with appropriate values. 1382 1383 .keywords: matrix, partitioning, register 1384 1385 .seealso: MatPartitioningRegisterDestroy(), MatPartitioningRegisterAll() 1386 M*/ 1387 #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1388 #define MatPartitioningRegisterDynamic(a,b,c,d) MatPartitioningRegister(a,b,c,0) 1389 #else 1390 #define MatPartitioningRegisterDynamic(a,b,c,d) MatPartitioningRegister(a,b,c,d) 1391 #endif 1392 1393 extern PetscBool MatPartitioningRegisterAllCalled; 1394 1395 extern PetscErrorCode MatPartitioningRegisterAll(const char[]); 1396 extern PetscErrorCode MatPartitioningRegisterDestroy(void); 1397 1398 extern PetscErrorCode MatPartitioningView(MatPartitioning,PetscViewer); 1399 extern PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning); 1400 extern PetscErrorCode MatPartitioningGetType(MatPartitioning,const MatPartitioningType*); 1401 1402 extern PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning); 1403 extern PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *); 1404 1405 extern PetscErrorCode MatPartitioningJostleSetCoarseLevel(MatPartitioning,PetscReal); 1406 extern PetscErrorCode MatPartitioningJostleSetCoarseSequential(MatPartitioning); 1407 1408 typedef enum {MP_CHACO_MULTILEVEL_KL,MP_CHACO_SPECTRAL,MP_CHACO_LINEAR,MP_CHACO_RANDOM, MP_CHACO_SCATTERED} MPChacoGlobalType; 1409 extern PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType); 1410 typedef enum { MP_CHACO_KERNIGHAN_LIN, MP_CHACO_NONE } MPChacoLocalType; 1411 extern PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType); 1412 extern PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning,PetscReal); 1413 typedef enum { MP_CHACO_LANCZOS, MP_CHACO_RQI_SYMMLQ } MPChacoEigenType; 1414 extern PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning,MPChacoEigenType); 1415 extern PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal); 1416 extern PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt); 1417 1418 #define MP_PARTY_OPT "opt" 1419 #define MP_PARTY_LIN "lin" 1420 #define MP_PARTY_SCA "sca" 1421 #define MP_PARTY_RAN "ran" 1422 #define MP_PARTY_GBF "gbf" 1423 #define MP_PARTY_GCF "gcf" 1424 #define MP_PARTY_BUB "bub" 1425 #define MP_PARTY_DEF "def" 1426 extern PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char*); 1427 #define MP_PARTY_HELPFUL_SETS "hs" 1428 #define MP_PARTY_KERNIGHAN_LIN "kl" 1429 #define MP_PARTY_NONE "no" 1430 extern PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char*); 1431 extern PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning,PetscReal); 1432 extern PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning,PetscBool ); 1433 extern PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning,PetscBool ); 1434 1435 typedef enum { MP_SCOTCH_GREEDY, MP_SCOTCH_GPS, MP_SCOTCH_GR_GPS } MPScotchGlobalType; 1436 extern PetscErrorCode MatPartitioningScotchSetArch(MatPartitioning,const char*); 1437 extern PetscErrorCode MatPartitioningScotchSetMultilevel(MatPartitioning); 1438 extern PetscErrorCode MatPartitioningScotchSetGlobal(MatPartitioning,MPScotchGlobalType); 1439 extern PetscErrorCode MatPartitioningScotchSetCoarseLevel(MatPartitioning,PetscReal); 1440 extern PetscErrorCode MatPartitioningScotchSetHostList(MatPartitioning,const char*); 1441 typedef enum { MP_SCOTCH_KERNIGHAN_LIN, MP_SCOTCH_NONE } MPScotchLocalType; 1442 extern PetscErrorCode MatPartitioningScotchSetLocal(MatPartitioning,MPScotchLocalType); 1443 extern PetscErrorCode MatPartitioningScotchSetMapping(MatPartitioning); 1444 extern PetscErrorCode MatPartitioningScotchSetStrategy(MatPartitioning,char*); 1445 1446 extern PetscErrorCode MatMeshToVertexGraph(Mat,PetscInt,Mat*); 1447 extern PetscErrorCode MatMeshToCellGraph(Mat,PetscInt,Mat*); 1448 1449 /* 1450 If you add entries here you must also add them to finclude/petscmat.h 1451 */ 1452 typedef enum { MATOP_SET_VALUES=0, 1453 MATOP_GET_ROW=1, 1454 MATOP_RESTORE_ROW=2, 1455 MATOP_MULT=3, 1456 MATOP_MULT_ADD=4, 1457 MATOP_MULT_TRANSPOSE=5, 1458 MATOP_MULT_TRANSPOSE_ADD=6, 1459 MATOP_SOLVE=7, 1460 MATOP_SOLVE_ADD=8, 1461 MATOP_SOLVE_TRANSPOSE=9, 1462 MATOP_SOLVE_TRANSPOSE_ADD=10, 1463 MATOP_LUFACTOR=11, 1464 MATOP_CHOLESKYFACTOR=12, 1465 MATOP_SOR=13, 1466 MATOP_TRANSPOSE=14, 1467 MATOP_GETINFO=15, 1468 MATOP_EQUAL=16, 1469 MATOP_GET_DIAGONAL=17, 1470 MATOP_DIAGONAL_SCALE=18, 1471 MATOP_NORM=19, 1472 MATOP_ASSEMBLY_BEGIN=20, 1473 MATOP_ASSEMBLY_END=21, 1474 MATOP_SET_OPTION=22, 1475 MATOP_ZERO_ENTRIES=23, 1476 MATOP_ZERO_ROWS=24, 1477 MATOP_LUFACTOR_SYMBOLIC=25, 1478 MATOP_LUFACTOR_NUMERIC=26, 1479 MATOP_CHOLESKY_FACTOR_SYMBOLIC=27, 1480 MATOP_CHOLESKY_FACTOR_NUMERIC=28, 1481 MATOP_SETUP_PREALLOCATION=29, 1482 MATOP_ILUFACTOR_SYMBOLIC=30, 1483 MATOP_ICCFACTOR_SYMBOLIC=31, 1484 MATOP_GET_ARRAY=32, 1485 MATOP_RESTORE_ARRAY=33, 1486 MATOP_DUPLICATE=34, 1487 MATOP_FORWARD_SOLVE=35, 1488 MATOP_BACKWARD_SOLVE=36, 1489 MATOP_ILUFACTOR=37, 1490 MATOP_ICCFACTOR=38, 1491 MATOP_AXPY=39, 1492 MATOP_GET_SUBMATRICES=40, 1493 MATOP_INCREASE_OVERLAP=41, 1494 MATOP_GET_VALUES=42, 1495 MATOP_COPY=43, 1496 MATOP_GET_ROW_MAX=44, 1497 MATOP_SCALE=45, 1498 MATOP_SHIFT=46, 1499 MATOP_DIAGONAL_SET=47, 1500 MATOP_ILUDT_FACTOR=48, 1501 MATOP_SET_BLOCK_SIZE=49, 1502 MATOP_GET_ROW_IJ=50, 1503 MATOP_RESTORE_ROW_IJ=51, 1504 MATOP_GET_COLUMN_IJ=52, 1505 MATOP_RESTORE_COLUMN_IJ=53, 1506 MATOP_FDCOLORING_CREATE=54, 1507 MATOP_COLORING_PATCH=55, 1508 MATOP_SET_UNFACTORED=56, 1509 MATOP_PERMUTE=57, 1510 MATOP_SET_VALUES_BLOCKED=58, 1511 MATOP_GET_SUBMATRIX=59, 1512 MATOP_DESTROY=60, 1513 MATOP_VIEW=61, 1514 MATOP_CONVERT_FROM=62, 1515 MATOP_USE_SCALED_FORM=63, 1516 MATOP_SCALE_SYSTEM=64, 1517 MATOP_UNSCALE_SYSTEM=65, 1518 MATOP_SET_LOCAL_TO_GLOBAL_MAP=66, 1519 MATOP_SET_VALUES_LOCAL=67, 1520 MATOP_ZERO_ROWS_LOCAL=68, 1521 MATOP_GET_ROW_MAX_ABS=69, 1522 MATOP_GET_ROW_MIN_ABS=70, 1523 MATOP_CONVERT=71, 1524 MATOP_SET_COLORING=72, 1525 MATOP_SET_VALUES_ADIC=73, 1526 MATOP_SET_VALUES_ADIFOR=74, 1527 MATOP_FD_COLORING_APPLY=75, 1528 MATOP_SET_FROM_OPTIONS=76, 1529 MATOP_MULT_CON=77, 1530 MATOP_MULT_TRANSPOSE_CON=78, 1531 MATOP_PERMUTE_SPARSIFY=79, 1532 MATOP_MULT_MULTIPLE=80, 1533 MATOP_SOLVE_MULTIPLE=81, 1534 MATOP_GET_INERTIA=82, 1535 MATOP_LOAD=83, 1536 MATOP_IS_SYMMETRIC=84, 1537 MATOP_IS_HERMITIAN=85, 1538 MATOP_IS_STRUCTURALLY_SYMMETRIC=86, 1539 MATOP_DUMMY=87, 1540 MATOP_GET_VECS=88, 1541 MATOP_MAT_MULT=89, 1542 MATOP_MAT_MULT_SYMBOLIC=90, 1543 MATOP_MAT_MULT_NUMERIC=91, 1544 MATOP_PTAP=92, 1545 MATOP_PTAP_SYMBOLIC=93, 1546 MATOP_PTAP_NUMERIC=94, 1547 MATOP_MAT_MULTTRANSPOSE=95, 1548 MATOP_MAT_MULTTRANSPOSE_SYM=96, 1549 MATOP_MAT_MULTTRANSPOSE_NUM=97, 1550 MATOP_PTAP_SYMBOLIC_SEQAIJ=98, 1551 MATOP_PTAP_NUMERIC_SEQAIJ=99, 1552 MATOP_PTAP_SYMBOLIC_MPIAIJ=100, 1553 MATOP_PTAP_NUMERIC_MPIAIJ=101, 1554 MATOP_CONJUGATE=102, 1555 MATOP_SET_SIZES=103, 1556 MATOP_SET_VALUES_ROW=104, 1557 MATOP_REAL_PART=105, 1558 MATOP_IMAG_PART=106, 1559 MATOP_GET_ROW_UTRIANGULAR=107, 1560 MATOP_RESTORE_ROW_UTRIANGULAR=108, 1561 MATOP_MATSOLVE=109, 1562 MATOP_GET_REDUNDANTMATRIX=110, 1563 MATOP_GET_ROW_MIN=111, 1564 MATOP_GET_COLUMN_VEC=112, 1565 MATOP_MISSING_DIAGONAL=113, 1566 MATOP_MATGETSEQNONZEROSTRUCTURE=114, 1567 MATOP_CREATE=115, 1568 MATOP_GET_GHOSTS=116, 1569 MATOP_GET_LOCALSUBMATRIX=117, 1570 MATOP_RESTORE_LOCALSUBMATRIX=118, 1571 MATOP_MULT_DIAGONAL_BLOCK=119, 1572 MATOP_HERMITIANTRANSPOSE=120, 1573 MATOP_MULTHERMITIANTRANSPOSE=121, 1574 MATOP_MULTHERMITIANTRANSPOSEADD=122, 1575 MATOP_GETMULTIPROCBLOCK=123, 1576 MATOP_GETCOLUMNNORMS=125, 1577 MATOP_GET_SUBMATRICES_PARALLEL=128 1578 } MatOperation; 1579 extern PetscErrorCode MatHasOperation(Mat,MatOperation,PetscBool *); 1580 extern PetscErrorCode MatShellSetOperation(Mat,MatOperation,void(*)(void)); 1581 extern PetscErrorCode MatShellGetOperation(Mat,MatOperation,void(**)(void)); 1582 extern PetscErrorCode MatShellSetContext(Mat,void*); 1583 1584 /* 1585 Codes for matrices stored on disk. By default they are 1586 stored in a universal format. By changing the format with 1587 PetscViewerSetFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will 1588 be stored in a way natural for the matrix, for example dense matrices 1589 would be stored as dense. Matrices stored this way may only be 1590 read into matrices of the same type. 1591 */ 1592 #define MATRIX_BINARY_FORMAT_DENSE -1 1593 1594 extern PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat,PetscReal); 1595 extern PetscErrorCode MatISGetLocalMat(Mat,Mat*); 1596 1597 /*S 1598 MatNullSpace - Object that removes a null space from a vector, i.e. 1599 orthogonalizes the vector to a subsapce 1600 1601 Level: advanced 1602 1603 Concepts: matrix; linear operator, null space 1604 1605 Users manual sections: 1606 . sec_singular 1607 1608 .seealso: MatNullSpaceCreate() 1609 S*/ 1610 typedef struct _p_MatNullSpace* MatNullSpace; 1611 1612 extern PetscErrorCode MatNullSpaceCreate(MPI_Comm,PetscBool ,PetscInt,const Vec[],MatNullSpace*); 1613 extern PetscErrorCode MatNullSpaceSetFunction(MatNullSpace,PetscErrorCode (*)(MatNullSpace,Vec,void*),void*); 1614 extern PetscErrorCode MatNullSpaceDestroy(MatNullSpace*); 1615 extern PetscErrorCode MatNullSpaceRemove(MatNullSpace,Vec,Vec*); 1616 extern PetscErrorCode MatNullSpaceAttach(Mat,MatNullSpace); 1617 extern PetscErrorCode MatNullSpaceTest(MatNullSpace,Mat,PetscBool *); 1618 extern PetscErrorCode MatNullSpaceView(MatNullSpace,PetscViewer); 1619 1620 extern PetscErrorCode MatReorderingSeqSBAIJ(Mat,IS); 1621 extern PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat,PetscReal); 1622 extern PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat,PetscInt *); 1623 extern PetscErrorCode MatSeqBAIJInvertBlockDiagonal(Mat); 1624 1625 extern PetscErrorCode MatCreateMAIJ(Mat,PetscInt,Mat*); 1626 extern PetscErrorCode MatMAIJRedimension(Mat,PetscInt,Mat*); 1627 extern PetscErrorCode MatMAIJGetAIJ(Mat,Mat*); 1628 1629 extern PetscErrorCode MatComputeExplicitOperator(Mat,Mat*); 1630 1631 extern PetscErrorCode MatDiagonalScaleLocal(Mat,Vec); 1632 1633 extern PetscErrorCode MatCreateMFFD(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,Mat*); 1634 extern PetscErrorCode MatMFFDSetBase(Mat,Vec,Vec); 1635 extern PetscErrorCode MatMFFDSetFunction(Mat,PetscErrorCode(*)(void*,Vec,Vec),void*); 1636 extern PetscErrorCode MatMFFDSetFunctioni(Mat,PetscErrorCode (*)(void*,PetscInt,Vec,PetscScalar*)); 1637 extern PetscErrorCode MatMFFDSetFunctioniBase(Mat,PetscErrorCode (*)(void*,Vec)); 1638 extern PetscErrorCode MatMFFDAddNullSpace(Mat,MatNullSpace); 1639 extern PetscErrorCode MatMFFDSetHHistory(Mat,PetscScalar[],PetscInt); 1640 extern PetscErrorCode MatMFFDResetHHistory(Mat); 1641 extern PetscErrorCode MatMFFDSetFunctionError(Mat,PetscReal); 1642 extern PetscErrorCode MatMFFDSetPeriod(Mat,PetscInt); 1643 extern PetscErrorCode MatMFFDGetH(Mat,PetscScalar *); 1644 extern PetscErrorCode MatMFFDSetOptionsPrefix(Mat,const char[]); 1645 extern PetscErrorCode MatMFFDCheckPositivity(void*,Vec,Vec,PetscScalar*); 1646 extern PetscErrorCode MatMFFDSetCheckh(Mat,PetscErrorCode (*)(void*,Vec,Vec,PetscScalar*),void*); 1647 1648 /*S 1649 MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free 1650 Jacobian vector products 1651 1652 Notes: MATMFFD is a specific MatType which uses the MatMFFD data structure 1653 1654 MatMFFD*() methods actually take the Mat as their first argument. Not a MatMFFD data structure 1655 1656 Level: developer 1657 1658 .seealso: MATMFFD, MatCreateMFFD(), MatMFFDSetFuction(), MatMFFDSetType(), MatMFFDRegister() 1659 S*/ 1660 typedef struct _p_MatMFFD* MatMFFD; 1661 1662 /*E 1663 MatMFFDType - algorithm used to compute the h used in computing matrix-vector products via differencing of the function 1664 1665 Level: beginner 1666 1667 .seealso: MatMFFDSetType(), MatMFFDRegister() 1668 E*/ 1669 #define MatMFFDType char* 1670 #define MATMFFD_DS "ds" 1671 #define MATMFFD_WP "wp" 1672 1673 extern PetscErrorCode MatMFFDSetType(Mat,const MatMFFDType); 1674 extern PetscErrorCode MatMFFDRegister(const char[],const char[],const char[],PetscErrorCode (*)(MatMFFD)); 1675 1676 /*MC 1677 MatMFFDRegisterDynamic - Adds a method to the MatMFFD registry. 1678 1679 Synopsis: 1680 PetscErrorCode MatMFFDRegisterDynamic(const char *name_solver,const char *path,const char *name_create,PetscErrorCode (*routine_create)(MatMFFD)) 1681 1682 Not Collective 1683 1684 Input Parameters: 1685 + name_solver - name of a new user-defined compute-h module 1686 . path - path (either absolute or relative) the library containing this solver 1687 . name_create - name of routine to create method context 1688 - routine_create - routine to create method context 1689 1690 Level: developer 1691 1692 Notes: 1693 MatMFFDRegisterDynamic() may be called multiple times to add several user-defined solvers. 1694 1695 If dynamic libraries are used, then the fourth input argument (routine_create) 1696 is ignored. 1697 1698 Sample usage: 1699 .vb 1700 MatMFFDRegisterDynamic("my_h",/home/username/my_lib/lib/libO/solaris/mylib.a, 1701 "MyHCreate",MyHCreate); 1702 .ve 1703 1704 Then, your solver can be chosen with the procedural interface via 1705 $ MatMFFDSetType(mfctx,"my_h") 1706 or at runtime via the option 1707 $ -snes_mf_type my_h 1708 1709 .keywords: MatMFFD, register 1710 1711 .seealso: MatMFFDRegisterAll(), MatMFFDRegisterDestroy() 1712 M*/ 1713 #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1714 #define MatMFFDRegisterDynamic(a,b,c,d) MatMFFDRegister(a,b,c,0) 1715 #else 1716 #define MatMFFDRegisterDynamic(a,b,c,d) MatMFFDRegister(a,b,c,d) 1717 #endif 1718 1719 extern PetscErrorCode MatMFFDRegisterAll(const char[]); 1720 extern PetscErrorCode MatMFFDRegisterDestroy(void); 1721 extern PetscErrorCode MatMFFDDSSetUmin(Mat,PetscReal); 1722 extern PetscErrorCode MatMFFDWPSetComputeNormU(Mat,PetscBool ); 1723 1724 1725 extern PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *); 1726 extern PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *); 1727 1728 /* 1729 PETSc interface to MUMPS 1730 */ 1731 #ifdef PETSC_HAVE_MUMPS 1732 extern PetscErrorCode MatMumpsSetIcntl(Mat,PetscInt,PetscInt); 1733 #endif 1734 1735 /* 1736 PETSc interface to SUPERLU 1737 */ 1738 #ifdef PETSC_HAVE_SUPERLU 1739 extern PetscErrorCode MatSuperluSetILUDropTol(Mat,PetscReal); 1740 #endif 1741 1742 extern PetscErrorCode MatCreateNest(MPI_Comm,PetscInt,const IS[],PetscInt,const IS[],const Mat[],Mat*); 1743 extern PetscErrorCode MatNestGetSize(Mat,PetscInt*,PetscInt*); 1744 extern PetscErrorCode MatNestGetSubMats(Mat,PetscInt*,PetscInt*,Mat***); 1745 extern PetscErrorCode MatNestGetSubMat(Mat,PetscInt,PetscInt,Mat*); 1746 extern PetscErrorCode MatNestSetVecType(Mat,const VecType); 1747 extern PetscErrorCode MatNestSetSubMats(Mat,PetscInt,const IS[],PetscInt,const IS[],const Mat[]); 1748 1749 PETSC_EXTERN_CXX_END 1750 #endif 1751