1 /* 2 Include file for the matrix component of PETSc 3 */ 4 #ifndef PETSCMAT_H 5 #define PETSCMAT_H 6 7 #include <petscvec.h> 8 9 /* SUBMANSEC = Mat */ 10 11 /*S 12 Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without 13 an explicit sparse representation (such as matrix-free operators) 14 15 Level: beginner 16 17 Note: 18 See [](doc_matrix), [](ch_matrices) and `MatType` for available matrix types 19 20 .seealso: [](doc_matrix), [](ch_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()` 21 S*/ 22 typedef struct _p_Mat *Mat; 23 24 /*J 25 MatType - String with the name of a PETSc matrix type 26 27 Level: beginner 28 29 Note: 30 [](doc_matrix) for a table of available matrix types 31 32 .seealso: [](doc_matrix), [](ch_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()` 33 J*/ 34 typedef const char *MatType; 35 #define MATSAME "same" 36 #define MATMAIJ "maij" 37 #define MATSEQMAIJ "seqmaij" 38 #define MATMPIMAIJ "mpimaij" 39 #define MATKAIJ "kaij" 40 #define MATSEQKAIJ "seqkaij" 41 #define MATMPIKAIJ "mpikaij" 42 #define MATIS "is" 43 #define MATAIJ "aij" 44 #define MATSEQAIJ "seqaij" 45 #define MATMPIAIJ "mpiaij" 46 #define MATAIJCRL "aijcrl" 47 #define MATSEQAIJCRL "seqaijcrl" 48 #define MATMPIAIJCRL "mpiaijcrl" 49 #define MATAIJCUSPARSE "aijcusparse" 50 #define MATSEQAIJCUSPARSE "seqaijcusparse" 51 #define MATMPIAIJCUSPARSE "mpiaijcusparse" 52 #define MATAIJHIPSPARSE "aijhipsparse" 53 #define MATSEQAIJHIPSPARSE "seqaijhipsparse" 54 #define MATMPIAIJHIPSPARSE "mpiaijhipsparse" 55 #define MATAIJKOKKOS "aijkokkos" 56 #define MATSEQAIJKOKKOS "seqaijkokkos" 57 #define MATMPIAIJKOKKOS "mpiaijkokkos" 58 #define MATAIJVIENNACL "aijviennacl" 59 #define MATSEQAIJVIENNACL "seqaijviennacl" 60 #define MATMPIAIJVIENNACL "mpiaijviennacl" 61 #define MATAIJPERM "aijperm" 62 #define MATSEQAIJPERM "seqaijperm" 63 #define MATMPIAIJPERM "mpiaijperm" 64 #define MATAIJSELL "aijsell" 65 #define MATSEQAIJSELL "seqaijsell" 66 #define MATMPIAIJSELL "mpiaijsell" 67 #define MATAIJMKL "aijmkl" 68 #define MATSEQAIJMKL "seqaijmkl" 69 #define MATMPIAIJMKL "mpiaijmkl" 70 #define MATBAIJMKL "baijmkl" 71 #define MATSEQBAIJMKL "seqbaijmkl" 72 #define MATMPIBAIJMKL "mpibaijmkl" 73 #define MATSHELL "shell" 74 #define MATCENTERING "centering" 75 #define MATDENSE "dense" 76 #define MATDENSECUDA "densecuda" 77 #define MATDENSEHIP "densehip" 78 #define MATSEQDENSE "seqdense" 79 #define MATSEQDENSECUDA "seqdensecuda" 80 #define MATSEQDENSEHIP "seqdensehip" 81 #define MATMPIDENSE "mpidense" 82 #define MATMPIDENSECUDA "mpidensecuda" 83 #define MATMPIDENSEHIP "mpidensehip" 84 #define MATELEMENTAL "elemental" 85 #define MATSCALAPACK "scalapack" 86 #define MATBAIJ "baij" 87 #define MATSEQBAIJ "seqbaij" 88 #define MATMPIBAIJ "mpibaij" 89 #define MATMPIADJ "mpiadj" 90 #define MATSBAIJ "sbaij" 91 #define MATSEQSBAIJ "seqsbaij" 92 #define MATMPISBAIJ "mpisbaij" 93 #define MATMFFD "mffd" 94 #define MATNORMAL "normal" 95 #define MATNORMALHERMITIAN "normalh" 96 #define MATLRC "lrc" 97 #define MATSCATTER "scatter" 98 #define MATBLOCKMAT "blockmat" 99 #define MATCOMPOSITE "composite" 100 #define MATFFT "fft" 101 #define MATFFTW "fftw" 102 #define MATSEQCUFFT "seqcufft" 103 #define MATSEQHIPFFT "seqhipfft" 104 #define MATTRANSPOSEMAT PETSC_DEPRECATED_MACRO(3, 18, 0, "MATTRANSPOSEVIRTUAL", ) "transpose" 105 #define MATTRANSPOSEVIRTUAL "transpose" 106 #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose" 107 #define MATSCHURCOMPLEMENT "schurcomplement" 108 #define MATPYTHON "python" 109 #define MATHYPRE "hypre" 110 #define MATHYPRESTRUCT "hyprestruct" 111 #define MATHYPRESSTRUCT "hypresstruct" 112 #define MATSUBMATRIX "submatrix" 113 #define MATLOCALREF "localref" 114 #define MATNEST "nest" 115 #define MATPREALLOCATOR "preallocator" 116 #define MATSELL "sell" 117 #define MATSEQSELL "seqsell" 118 #define MATMPISELL "mpisell" 119 #define MATSELLCUDA "sellcuda" 120 #define MATSEQSELLCUDA "seqsellcuda" 121 #define MATMPISELLCUDA "mpisellcuda" 122 #define MATDUMMY "dummy" 123 #define MATLMVM "lmvm" 124 #define MATLMVMDFP "lmvmdfp" 125 #define MATLMVMBFGS "lmvmbfgs" 126 #define MATLMVMSR1 "lmvmsr1" 127 #define MATLMVMBROYDEN "lmvmbroyden" 128 #define MATLMVMBADBROYDEN "lmvmbadbroyden" 129 #define MATLMVMSYMBROYDEN "lmvmsymbroyden" 130 #define MATLMVMSYMBADBROYDEN "lmvmsymbadbroyden" 131 #define MATLMVMDIAGBROYDEN "lmvmdiagbroyden" 132 #define MATCONSTANTDIAGONAL "constantdiagonal" 133 #define MATDIAGONAL "diagonal" 134 #define MATHTOOL "htool" 135 #define MATH2OPUS "h2opus" 136 137 /*J 138 MatSolverType - String with the name of a PETSc factorization based matrix solver type. 139 140 For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc 141 142 Level: beginner 143 144 Note: 145 `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as 146 a ./configure option to install them 147 148 .seealso: [](sec_matfactor), [](ch_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()` 149 J*/ 150 typedef const char *MatSolverType; 151 #define MATSOLVERSUPERLU "superlu" 152 #define MATSOLVERSUPERLU_DIST "superlu_dist" 153 #define MATSOLVERSTRUMPACK "strumpack" 154 #define MATSOLVERUMFPACK "umfpack" 155 #define MATSOLVERCHOLMOD "cholmod" 156 #define MATSOLVERKLU "klu" 157 #define MATSOLVERELEMENTAL "elemental" 158 #define MATSOLVERSCALAPACK "scalapack" 159 #define MATSOLVERESSL "essl" 160 #define MATSOLVERLUSOL "lusol" 161 #define MATSOLVERMUMPS "mumps" 162 #define MATSOLVERMKL_PARDISO "mkl_pardiso" 163 #define MATSOLVERMKL_CPARDISO "mkl_cpardiso" 164 #define MATSOLVERPASTIX "pastix" 165 #define MATSOLVERMATLAB "matlab" 166 #define MATSOLVERPETSC "petsc" 167 #define MATSOLVERBAS "bas" 168 #define MATSOLVERCUSPARSE "cusparse" 169 #define MATSOLVERCUDA "cuda" 170 #define MATSOLVERHIPSPARSE "hipsparse" 171 #define MATSOLVERHIP "hip" 172 #define MATSOLVERKOKKOS "kokkos" 173 #define MATSOLVERSPQR "spqr" 174 175 /*E 176 MatFactorType - indicates what type of factorization is requested 177 178 Values: 179 + `MAT_FACTOR_LU` - LU factorization 180 . `MAT_FACTOR_CHOLESKY` - Cholesky factorization 181 . `MAT_FACTOR_ILU` - ILU factorization 182 . `MAT_FACTOR_ICC` - incomplete Cholesky factorization 183 . `MAT_FACTOR_ILUDT` - ILU factorization with drop tolerance 184 - `MAT_FACTOR_QR` - QR factorization 185 186 Level: beginner 187 188 .seealso: [](ch_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()` 189 E*/ 190 typedef enum { 191 MAT_FACTOR_NONE, 192 MAT_FACTOR_LU, 193 MAT_FACTOR_CHOLESKY, 194 MAT_FACTOR_ILU, 195 MAT_FACTOR_ICC, 196 MAT_FACTOR_ILUDT, 197 MAT_FACTOR_QR, 198 MAT_FACTOR_NUM_TYPES 199 } MatFactorType; 200 PETSC_EXTERN const char *const MatFactorTypes[]; 201 202 PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *); 203 PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *); 204 PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *); 205 PETSC_DEPRECATED_FUNCTION(3, 15, 0, "MatFactorGetCanUseOrdering()", ) static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b) 206 { 207 return MatFactorGetCanUseOrdering(A, b); 208 } 209 PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *); 210 PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *); 211 PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType); 212 PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatSolverFunction)(Mat, MatFactorType, Mat *); 213 PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFunction); 214 PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFunction *); 215 typedef MatSolverType MatSolverPackage PETSC_DEPRECATED_TYPEDEF(3, 9, 0, "MatSolverType", ); 216 PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeRegister()", ) static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFunction f) 217 { 218 return MatSolverTypeRegister(stype, mtype, ftype, f); 219 } 220 PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeGet()", ) static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFunction *f) 221 { 222 return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f); 223 } 224 225 /*E 226 MatProductType - indicates what type of matrix product is requested 227 228 Values: 229 + `MATPRODUCT_AB` - product of two matrices 230 . `MATPRODUCT_AtB` - product of the transpose of a given matrix with a matrix 231 . `MATPRODUCT_ABt` - product of a matrix with the transpose of another given matrix 232 . `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself 233 . `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix 234 - `MATPRODUCT_ABC` - the product of three matrices 235 236 Level: beginner 237 238 .seealso: [](sec_matmatproduct), [](ch_matrices), `MatProductSetType()` 239 E*/ 240 typedef enum { 241 MATPRODUCT_UNSPECIFIED = 0, 242 MATPRODUCT_AB, 243 MATPRODUCT_AtB, 244 MATPRODUCT_ABt, 245 MATPRODUCT_PtAP, 246 MATPRODUCT_RARt, 247 MATPRODUCT_ABC 248 } MatProductType; 249 PETSC_EXTERN const char *const MatProductTypes[]; 250 251 /*J 252 MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation 253 254 Level: beginner 255 256 .seealso: [](sec_matmatproduct), [](ch_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType` 257 J*/ 258 typedef const char *MatProductAlgorithm; 259 #define MATPRODUCTALGORITHMDEFAULT "default" 260 #define MATPRODUCTALGORITHMSORTED "sorted" 261 #define MATPRODUCTALGORITHMSCALABLE "scalable" 262 #define MATPRODUCTALGORITHMSCALABLEFAST "scalable_fast" 263 #define MATPRODUCTALGORITHMHEAP "heap" 264 #define MATPRODUCTALGORITHMBHEAP "btheap" 265 #define MATPRODUCTALGORITHMLLCONDENSED "llcondensed" 266 #define MATPRODUCTALGORITHMROWMERGE "rowmerge" 267 #define MATPRODUCTALGORITHMOUTERPRODUCT "outerproduct" 268 #define MATPRODUCTALGORITHMATB "at*b" 269 #define MATPRODUCTALGORITHMRAP "rap" 270 #define MATPRODUCTALGORITHMNONSCALABLE "nonscalable" 271 #define MATPRODUCTALGORITHMSEQMPI "seqmpi" 272 #define MATPRODUCTALGORITHMBACKEND "backend" 273 #define MATPRODUCTALGORITHMOVERLAPPING "overlapping" 274 #define MATPRODUCTALGORITHMMERGED "merged" 275 #define MATPRODUCTALGORITHMALLATONCE "allatonce" 276 #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged" 277 #define MATPRODUCTALGORITHMALLGATHERV "allgatherv" 278 #define MATPRODUCTALGORITHMCYCLIC "cyclic" 279 #if defined(PETSC_HAVE_HYPRE) 280 #define MATPRODUCTALGORITHMHYPRE "hypre" 281 #endif 282 283 PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *); 284 PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat); 285 PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType); 286 PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm); 287 PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal); 288 PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat); 289 PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat); 290 PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat); 291 PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat); 292 PETSC_EXTERN PetscErrorCode MatProductClear(Mat); 293 PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer); 294 PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *); 295 PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *); 296 297 /* Logging support */ 298 #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */ 299 PETSC_EXTERN PetscClassId MAT_CLASSID; 300 PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID; 301 PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID; 302 PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID; 303 PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID; 304 PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID; 305 PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID; 306 PETSC_EXTERN PetscClassId MATMFFD_CLASSID; 307 308 /*E 309 MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions 310 are to be reused to store the new matrix values. 311 312 Values: 313 + `MAT_INITIAL_MATRIX` - create a new matrix 314 . `MAT_REUSE_MATRIX` - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX` 315 . `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions) 316 - `MAT_IGNORE_MATRIX` - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions) 317 318 Level: beginner 319 320 .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()` 321 E*/ 322 typedef enum { 323 MAT_INITIAL_MATRIX, 324 MAT_REUSE_MATRIX, 325 MAT_IGNORE_MATRIX, 326 MAT_INPLACE_MATRIX 327 } MatReuse; 328 329 /*E 330 MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()` 331 include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`. 332 333 Level: developer 334 335 Values: 336 + `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values 337 - `MAT_GET_VALUES` - copy the matrix values 338 339 Developer Note: 340 Why is not just a boolean used for this information? 341 342 .seealso: [](ch_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()` 343 E*/ 344 typedef enum { 345 MAT_DO_NOT_GET_VALUES, 346 MAT_GET_VALUES 347 } MatCreateSubMatrixOption; 348 349 PETSC_EXTERN PetscErrorCode MatInitializePackage(void); 350 PETSC_EXTERN PetscErrorCode MatFinalizePackage(void); 351 352 PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *); 353 PETSC_EXTERN PetscErrorCode MatCreateFromOptions(MPI_Comm, const char *, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 354 PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt); 355 PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType); 356 PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *); 357 PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType); 358 PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat); 359 PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]); 360 PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat)); 361 PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]); 362 PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]); 363 PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]); 364 PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]); 365 PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]); 366 PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]); 367 PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool); 368 369 PETSC_EXTERN PetscFunctionList MatList; 370 PETSC_EXTERN PetscFunctionList MatColoringList; 371 PETSC_EXTERN PetscFunctionList MatPartitioningList; 372 373 /*E 374 MatStructure - Indicates if two matrices have the same nonzero structure 375 376 Values: 377 + `SAME_NONZERO_PATTERN` - the two matrices have identical nonzero patterns 378 . `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns 379 . `SUBSET_NONZERO_PATTERN` - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix 380 - `UNKNOWN_NONZERO_PATTERN` - there is no known relationship between the nonzero patterns. In this case the implementations 381 may try to detect a relationship to optimize the operation 382 383 Level: beginner 384 385 .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()` 386 E*/ 387 typedef enum { 388 DIFFERENT_NONZERO_PATTERN, 389 SUBSET_NONZERO_PATTERN, 390 SAME_NONZERO_PATTERN, 391 UNKNOWN_NONZERO_PATTERN 392 } MatStructure; 393 PETSC_EXTERN const char *const MatStructures[]; 394 395 #if defined PETSC_HAVE_MKL_SPARSE 396 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 397 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 398 PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 399 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 400 #endif 401 402 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 403 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 404 405 PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 406 PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 407 PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]); 408 PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 409 PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *); 410 PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *); 411 PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *); 412 PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt); 413 PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *); 414 415 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 416 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 417 418 PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 419 PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 420 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 421 PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 422 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 423 PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 424 PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]); 425 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *); 426 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *); 427 428 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 429 PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 430 PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 431 432 PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]); 433 PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]); 434 PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode); 435 436 PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *); 437 PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 438 439 PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 440 PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 441 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 442 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 443 PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]); 444 445 PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *); 446 PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *); 447 PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *); 448 PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *); 449 PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *); 450 PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *); 451 PETSC_EXTERN PetscErrorCode MatLRCSetMats(Mat, Mat, Mat, Vec, Mat); 452 PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *); 453 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 454 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 455 456 PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *); 457 PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter); 458 PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *); 459 PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *); 460 PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat); 461 PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat); 462 typedef enum { 463 MAT_COMPOSITE_MERGE_RIGHT, 464 MAT_COMPOSITE_MERGE_LEFT 465 } MatCompositeMergeType; 466 PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType); 467 PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *); 468 typedef enum { 469 MAT_COMPOSITE_ADDITIVE, 470 MAT_COMPOSITE_MULTIPLICATIVE 471 } MatCompositeType; 472 PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType); 473 PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *); 474 PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure); 475 PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *); 476 PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *); 477 PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *); 478 PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *); 479 480 PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *); 481 PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *); 482 483 PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *); 484 PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *); 485 PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *); 486 PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *); 487 PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *); 488 PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *); 489 PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *); 490 PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS); 491 PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *); 492 PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *); 493 PETSC_EXTERN PetscErrorCode MatCreateDiagonal(Vec, Mat *); 494 PETSC_EXTERN PetscErrorCode MatDiagonalGetDiagonal(Mat, Vec *); 495 PETSC_EXTERN PetscErrorCode MatDiagonalRestoreDiagonal(Mat, Vec *); 496 PETSC_EXTERN PetscErrorCode MatDiagonalGetInverseDiagonal(Mat, Vec *); 497 PETSC_EXTERN PetscErrorCode MatDiagonalRestoreInverseDiagonal(Mat, Vec *); 498 499 #if defined(PETSC_HAVE_HYPRE) 500 PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 501 #endif 502 503 PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]); 504 PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]); 505 506 PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat); 507 PETSC_EXTERN PetscErrorCode MatSetUp(Mat); 508 PETSC_EXTERN PetscErrorCode MatDestroy(Mat *); 509 PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *); 510 511 PETSC_EXTERN PetscErrorCode MatConjugate(Mat); 512 PETSC_EXTERN PetscErrorCode MatRealPart(Mat); 513 PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat); 514 PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *); 515 PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *); 516 PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **); 517 PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *); 518 PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat); 519 PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *); 520 PETSC_EXTERN PetscErrorCode MatComputeVariableBlockEnvelope(Mat); 521 522 PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 523 PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode); 524 PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 525 PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]); 526 PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]); 527 PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]); 528 PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom); 529 530 /*S 531 MatStencil - Data structure (C struct) for storing information about rows and 532 columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()` 533 534 Level: beginner 535 536 Notes: 537 The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored). 538 The c represents the the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored. 539 540 For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`. 541 542 For staggered grids, see `DMStagStencil` 543 544 Fortran Note: 545 See `MatSetValuesStencil()` for details. 546 547 .seealso: [](ch_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`, 548 `DMStagStencil` 549 S*/ 550 typedef struct { 551 PetscInt k, j, i, c; 552 } MatStencil; 553 554 PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 555 PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 556 PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt); 557 558 /*E 559 MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use 560 561 Values: 562 + `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix 563 - `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted 564 565 Level: beginner 566 567 .seealso: [](ch_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()` 568 E*/ 569 typedef enum { 570 MAT_FLUSH_ASSEMBLY = 1, 571 MAT_FINAL_ASSEMBLY = 0 572 } MatAssemblyType; 573 PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType); 574 PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType); 575 PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *); 576 577 /*E 578 MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage 579 580 Level: beginner 581 582 Note: 583 See `MatSetOption()` for the use of the options 584 585 Developer Note: 586 Entries that are negative need not be called collectively by all processes. 587 588 .seealso: [](ch_matrices), `Mat`, `MatSetOption()` 589 E*/ 590 typedef enum { 591 MAT_OPTION_MIN = -3, 592 MAT_UNUSED_NONZERO_LOCATION_ERR = -2, 593 MAT_ROW_ORIENTED = -1, 594 MAT_SYMMETRIC = 1, 595 MAT_STRUCTURALLY_SYMMETRIC = 2, 596 MAT_FORCE_DIAGONAL_ENTRIES = 3, 597 MAT_IGNORE_OFF_PROC_ENTRIES = 4, 598 MAT_USE_HASH_TABLE = 5, 599 MAT_KEEP_NONZERO_PATTERN = 6, 600 MAT_IGNORE_ZERO_ENTRIES = 7, 601 MAT_USE_INODES = 8, 602 MAT_HERMITIAN = 9, 603 MAT_SYMMETRY_ETERNAL = 10, 604 MAT_NEW_NONZERO_LOCATION_ERR = 11, 605 MAT_IGNORE_LOWER_TRIANGULAR = 12, 606 MAT_ERROR_LOWER_TRIANGULAR = 13, 607 MAT_GETROW_UPPERTRIANGULAR = 14, 608 MAT_SPD = 15, 609 MAT_NO_OFF_PROC_ZERO_ROWS = 16, 610 MAT_NO_OFF_PROC_ENTRIES = 17, 611 MAT_NEW_NONZERO_LOCATIONS = 18, 612 MAT_NEW_NONZERO_ALLOCATION_ERR = 19, 613 MAT_SUBSET_OFF_PROC_ENTRIES = 20, 614 MAT_SUBMAT_SINGLEIS = 21, 615 MAT_STRUCTURE_ONLY = 22, 616 MAT_SORTED_FULL = 23, 617 MAT_FORM_EXPLICIT_TRANSPOSE = 24, 618 MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25, 619 MAT_SPD_ETERNAL = 26, 620 MAT_OPTION_MAX = 27 621 } MatOption; 622 623 PETSC_EXTERN const char *const *MatOptions; 624 PETSC_EXTERN PetscErrorCode MatSetOption(Mat, MatOption, PetscBool); 625 PETSC_EXTERN PetscErrorCode MatGetOption(Mat, MatOption, PetscBool *); 626 PETSC_EXTERN PetscErrorCode MatPropagateSymmetryOptions(Mat, Mat); 627 PETSC_EXTERN PetscErrorCode MatGetType(Mat, MatType *); 628 629 PETSC_EXTERN PetscErrorCode MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 630 PETSC_EXTERN PetscErrorCode MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 631 PETSC_EXTERN PetscErrorCode MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 632 PETSC_EXTERN PetscErrorCode MatGetRowUpperTriangular(Mat); 633 PETSC_EXTERN PetscErrorCode MatRestoreRowUpperTriangular(Mat); 634 PETSC_EXTERN PetscErrorCode MatGetColumnVector(Mat, Vec, PetscInt); 635 PETSC_EXTERN PetscErrorCode MatSeqAIJGetArray(Mat, PetscScalar *[]); 636 PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]); 637 PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]); 638 PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArray(Mat, PetscScalar *[]); 639 PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]); 640 PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]); 641 PETSC_EXTERN PetscErrorCode MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *); 642 PETSC_EXTERN PetscErrorCode MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 643 PETSC_EXTERN PetscErrorCode MatSeqAIJSetType(Mat, MatType); 644 PETSC_EXTERN PetscErrorCode MatSeqAIJKron(Mat, Mat, MatReuse, Mat *); 645 PETSC_EXTERN PetscErrorCode MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *)); 646 PETSC_EXTERN PetscFunctionList MatSeqAIJList; 647 PETSC_EXTERN PetscErrorCode MatSeqBAIJGetArray(Mat, PetscScalar *[]); 648 PETSC_EXTERN PetscErrorCode MatSeqBAIJRestoreArray(Mat, PetscScalar *[]); 649 PETSC_EXTERN PetscErrorCode MatSeqSBAIJGetArray(Mat, PetscScalar *[]); 650 PETSC_EXTERN PetscErrorCode MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]); 651 PETSC_EXTERN PetscErrorCode MatDenseGetArray(Mat, PetscScalar *[]); 652 PETSC_EXTERN PetscErrorCode MatDenseRestoreArray(Mat, PetscScalar *[]); 653 PETSC_EXTERN PetscErrorCode MatDensePlaceArray(Mat, const PetscScalar[]); 654 PETSC_EXTERN PetscErrorCode MatDenseReplaceArray(Mat, const PetscScalar[]); 655 PETSC_EXTERN PetscErrorCode MatDenseResetArray(Mat); 656 PETSC_EXTERN PetscErrorCode MatDenseGetArrayRead(Mat, const PetscScalar *[]); 657 PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayRead(Mat, const PetscScalar *[]); 658 PETSC_EXTERN PetscErrorCode MatDenseGetArrayWrite(Mat, PetscScalar *[]); 659 PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWrite(Mat, PetscScalar *[]); 660 PETSC_EXTERN PetscErrorCode MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *); 661 PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]); 662 PETSC_EXTERN PetscErrorCode MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *); 663 PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]); 664 PETSC_EXTERN PetscErrorCode MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *); 665 PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]); 666 PETSC_EXTERN PetscErrorCode MatGetBlockSize(Mat, PetscInt *); 667 PETSC_EXTERN PetscErrorCode MatSetBlockSize(Mat, PetscInt); 668 PETSC_EXTERN PetscErrorCode MatGetBlockSizes(Mat, PetscInt *, PetscInt *); 669 PETSC_EXTERN PetscErrorCode MatSetBlockSizes(Mat, PetscInt, PetscInt); 670 PETSC_EXTERN PetscErrorCode MatSetBlockSizesFromMats(Mat, Mat, Mat); 671 PETSC_EXTERN PetscErrorCode MatSetVariableBlockSizes(Mat, PetscInt, PetscInt *); 672 PETSC_EXTERN PetscErrorCode MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt **); 673 674 PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]); 675 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]); 676 PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *); 677 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *); 678 PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *); 679 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *); 680 PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *); 681 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *); 682 PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 683 PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *); 684 685 PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec); 686 PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec); 687 PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec); 688 PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec); 689 PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec); 690 PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *); 691 PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *); 692 PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec); 693 PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec); 694 PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat); 695 PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat); 696 PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat); 697 PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec); 698 699 /*E 700 MatDuplicateOption - Indicates if a duplicated sparse matrix should have 701 its numerical values copied over or just its nonzero structure. 702 703 Values: 704 + `MAT_DO_NOT_COPY_VALUES` - Create a matrix using the same nonzero pattern as the original matrix, 705 with zeros for the numerical values 706 . `MAT_COPY_VALUES` - Create a matrix with the same nonzero pattern as the original matrix 707 and with the same numerical values. 708 - `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix 709 and does not copy it, using zeros for the numerical values. The parent and 710 child matrices will share their index (i and j) arrays, and you cannot 711 insert new nonzero entries into either matrix 712 713 Level: beginner 714 715 Note: 716 Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in 717 this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified. 718 719 .seealso: [](ch_matrices), `Mat`, `MatDuplicate()` 720 E*/ 721 typedef enum { 722 MAT_DO_NOT_COPY_VALUES, 723 MAT_COPY_VALUES, 724 MAT_SHARE_NONZERO_PATTERN 725 } MatDuplicateOption; 726 727 PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *); 728 PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *); 729 730 PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure); 731 PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer); 732 PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *); 733 PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *); 734 PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *); 735 PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *); 736 PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *); 737 PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *); 738 PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *); 739 PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *); 740 PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer); 741 742 PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 743 PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 744 PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 745 PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 746 747 /*S 748 MatInfo - Context of matrix information, used with `MatGetInfo()` 749 750 Level: intermediate 751 752 Fortran Note: 753 Information is stored as a double-precision array of dimension `MAT_INFO_SIZE` 754 755 .seealso: [](ch_matrices), `Mat`, `MatGetInfo()`, `MatInfoType` 756 S*/ 757 typedef struct { 758 PetscLogDouble block_size; /* block size */ 759 PetscLogDouble nz_allocated, nz_used, nz_unneeded; /* number of nonzeros */ 760 PetscLogDouble memory; /* memory allocated */ 761 PetscLogDouble assemblies; /* number of matrix assemblies called */ 762 PetscLogDouble mallocs; /* number of mallocs during MatSetValues() */ 763 PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */ 764 PetscLogDouble factor_mallocs; /* number of mallocs during factorization */ 765 } MatInfo; 766 767 /*E 768 MatInfoType - Indicates if you want information about the local part of the matrix, 769 the entire parallel matrix or the maximum over all the local parts. 770 771 Values: 772 + `MAT_LOCAL` - values for each MPI process part of the matrix 773 . `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes 774 - `MAT_GLOBAL_SUM` - sum of each value over all MPI processes 775 776 Level: beginner 777 778 .seealso: [](ch_matrices), `MatGetInfo()`, `MatInfo` 779 E*/ 780 typedef enum { 781 MAT_LOCAL = 1, 782 MAT_GLOBAL_MAX = 2, 783 MAT_GLOBAL_SUM = 3 784 } MatInfoType; 785 PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *); 786 PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec); 787 PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]); 788 PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]); 789 PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]); 790 PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]); 791 PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec); 792 PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *); 793 PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *); 794 PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat); 795 PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *); 796 PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *); 797 PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec); 798 PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode); 799 800 PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *); 801 PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *); 802 PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *); 803 PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 804 PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 805 PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 806 PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 807 PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 808 PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 809 PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 810 PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 811 PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 812 PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *); 813 814 PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *); 815 PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *); 816 PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *); 817 PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *); 818 PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *); 819 PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *); 820 PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *); 821 PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *); 822 PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *); 823 PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat); 824 PETSC_EXTERN PetscErrorCode MatSetInf(Mat); 825 PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 826 PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec); 827 PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 828 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 829 PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 830 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec); 831 832 PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *); 833 PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *); 834 PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *); 835 PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **); 836 PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *); 837 PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **); 838 PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *); 839 840 PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 841 PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrices()", ) static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 842 { 843 return MatCreateSubMatrices(mat, n, irow, icol, scall, submat); 844 } 845 PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 846 PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatricesMPI()", ) static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 847 { 848 return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat); 849 } 850 PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]); 851 PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]); 852 PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *); 853 PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrix()", ) static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat) 854 { 855 return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat); 856 } 857 PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *); 858 PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *); 859 PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *); 860 PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *); 861 862 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *); 863 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *); 864 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat); 865 PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *); 866 PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *); 867 PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *); 868 PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *); 869 PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *); 870 PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *); 871 PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]); 872 873 PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt); 874 PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov); 875 PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool); 876 877 PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 878 879 PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 880 PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 881 882 PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *); 883 PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *); 884 885 PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 886 PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *); 887 888 PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure); 889 PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure); 890 891 PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar); 892 PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar); 893 894 PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping); 895 PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 896 PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *); 897 PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout); 898 PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 899 PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 900 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 901 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 902 PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 903 PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 904 PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 905 906 PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt); 907 PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *); 908 909 PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec); 910 PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec); 911 PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec); 912 PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *); 913 PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *); 914 PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *); 915 PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *); 916 PETSC_DEPRECATED_FUNCTION(3, 6, 0, "MatCreateVecs()", ) static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y) 917 { 918 return MatCreateVecs(mat, x, y); 919 } 920 PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *); 921 PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *); 922 PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *); 923 PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *); 924 PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *); 925 926 /*@C 927 MatSetValue - Set a single entry into a matrix. 928 929 This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()` 930 MUST be called after all calls to `MatSetValue()` have been completed. 931 932 Not Collective 933 934 Input Parameters: 935 + mat - the matrix 936 . i - the row location of the entry 937 . j - the column location of the entry 938 . va - the value to insert 939 - mode - either `INSERT_VALUES` or `ADD_VALUES` 940 941 Level: beginner 942 943 Note: 944 For efficiency one should use `MatSetValues()` and set several values simultaneously. 945 946 .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `InsertMode`, `MatGetValue()`, `MatSetValues()`, 947 `MatSetValueLocal()`, `MatSetValuesLocal()` 948 @*/ 949 static inline PetscErrorCode MatSetValue(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 950 { 951 return MatSetValues(mat, 1, &i, 1, &j, &va, mode); 952 } 953 954 /*@C 955 MatGetValue - Gets a single value from a matrix 956 957 Not Collective; can only return a value owned by the given process 958 959 Input Parameters: 960 + mat - the matrix 961 . row - the row location of the entry 962 - col - the column location of the entry 963 964 Output Parameter: 965 . va - the value 966 967 Level: advanced 968 969 Notes: 970 The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd` before this call 971 972 For efficiency one should use `MatGetValues()` and get several values simultaneously. 973 974 See notes for `MatGetValues()`. 975 976 .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()` 977 @*/ 978 static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va) 979 { 980 return MatGetValues(mat, 1, &row, 1, &col, va); 981 } 982 983 /*@C 984 MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes. 985 986 Not Collective 987 988 Input Parameters: 989 + mat - the matrix 990 . i - the row location of the entry 991 . j - the column location of the entry 992 . va - the value to insert 993 - mode - either `INSERT_VALUES` or `ADD_VALUES` 994 995 Level: intermediate 996 997 Notes: 998 For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously. 999 1000 See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used. 1001 1002 .seealso: [](ch_matrices), `MatSetValue()`, `MatSetValuesLocal()` 1003 @*/ 1004 static inline PetscErrorCode MatSetValueLocal(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 1005 { 1006 return MatSetValuesLocal(mat, 1, &i, 1, &j, &va, mode); 1007 } 1008 1009 /*MC 1010 MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per 1011 row in a matrix providing the data that one can use to correctly preallocate the matrix. 1012 1013 Synopsis: 1014 #include <petscmat.h> 1015 PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz) 1016 1017 Collective 1018 1019 Input Parameters: 1020 + comm - the communicator that will share the eventually allocated matrix 1021 . nrows - the number of LOCAL rows in the matrix 1022 - ncols - the number of LOCAL columns in the matrix 1023 1024 Output Parameters: 1025 + dnz - the array that will be passed to the matrix preallocation routines 1026 - onz - the other array passed to the matrix preallocation routines 1027 1028 Level: deprecated (since v3.19) 1029 1030 Notes: 1031 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1032 the use of this routine 1033 1034 This is a macro that handles its own error checking, it does not return an error code. 1035 1036 Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1037 1038 Developer Note: 1039 This is a MACRO not a function because it has a leading { that is closed by `PetscPreallocateFinalize()`. 1040 1041 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1042 `MatPreallocateSymmetricSetLocalBlock()` 1043 M*/ 1044 #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \ 1045 do { \ 1046 PetscInt __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \ 1047 PetscInt PETSC_UNUSED __start; \ 1048 PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \ 1049 PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \ 1050 __start = __end - __ncols; \ 1051 (void)__start; \ 1052 PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \ 1053 __rstart -= __nrows 1054 1055 #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateBegin()", ) MatPreallocateBegin(__VA_ARGS__) 1056 1057 /*MC 1058 MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1059 inserted using a local number of the rows and columns 1060 1061 Synopsis: 1062 #include <petscmat.h> 1063 PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1064 1065 Not Collective 1066 1067 Input Parameters: 1068 + map - the row mapping from local numbering to global numbering 1069 . nrows - the number of rows indicated 1070 . rows - the indices of the rows 1071 . cmap - the column mapping from local to global numbering 1072 . ncols - the number of columns in the matrix 1073 . cols - the columns indicated 1074 . dnz - the array that will be passed to the matrix preallocation routines 1075 - onz - the other array passed to the matrix preallocation routines 1076 1077 Level: deprecated (since v3.19) 1078 1079 Notes: 1080 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1081 the use of this routine 1082 1083 Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1084 1085 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1086 `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()` 1087 M*/ 1088 #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 1089 PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1090 1091 /*MC 1092 MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1093 inserted using a local number of the rows and columns. This version removes any duplicate columns in cols 1094 1095 Synopsis: 1096 #include <petscmat.h> 1097 PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1098 1099 Not Collective 1100 1101 Input Parameters: 1102 + map - the row mapping from local numbering to global numbering 1103 . nrows - the number of rows indicated 1104 . rows - the indices of the rows (these values are mapped to the global values) 1105 . cmap - the column mapping from local to global numbering 1106 . ncols - the number of columns in the matrix (this value will be changed if duplicate columns are found) 1107 . cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed) 1108 . dnz - the array that will be passed to the matrix preallocation routines 1109 - onz - the other array passed to the matrix preallocation routines 1110 1111 Level: deprecated (since v3.19) 1112 1113 Notes: 1114 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1115 the use of this routine 1116 1117 Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1118 1119 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1120 `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1121 M*/ 1122 #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 1123 PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1124 1125 /*MC 1126 MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1127 inserted using a local number of the rows and columns 1128 1129 Synopsis: 1130 #include <petscmat.h> 1131 PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1132 1133 Not Collective 1134 1135 Input Parameters: 1136 + map - the row mapping from local numbering to global numbering 1137 . nrows - the number of rows indicated 1138 . rows - the indices of the rows 1139 . cmap - the column mapping from local to global numbering 1140 . ncols - the number of columns in the matrix 1141 . cols - the columns indicated 1142 . dnz - the array that will be passed to the matrix preallocation routines 1143 - onz - the other array passed to the matrix preallocation routines 1144 1145 Level: deprecated (since v3.19) 1146 1147 Notes: 1148 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1149 the use of this routine 1150 1151 Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1152 1153 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1154 `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()` 1155 M*/ 1156 #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 1157 PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1158 1159 /*MC 1160 MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1161 inserted using a local number of the rows and columns 1162 1163 Synopsis: 1164 #include <petscmat.h> 1165 PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1166 1167 Not Collective 1168 1169 Input Parameters: 1170 + map - the mapping between local numbering and global numbering 1171 . nrows - the number of rows indicated 1172 . rows - the indices of the rows 1173 . ncols - the number of columns in the matrix 1174 . cols - the columns indicated 1175 . dnz - the array that will be passed to the matrix preallocation routines 1176 - onz - the other array passed to the matrix preallocation routines 1177 1178 Level: deprecated (since v3.19) 1179 1180 Notes: 1181 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1182 the use of this routine 1183 1184 Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1185 1186 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()` 1187 `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1188 M*/ 1189 #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \ 1190 PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));) 1191 1192 /*MC 1193 MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1194 inserted using a local number of the rows and columns 1195 1196 Synopsis: 1197 #include <petscmat.h> 1198 PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1199 1200 Not Collective 1201 1202 Input Parameters: 1203 + row - the row 1204 . ncols - the number of columns in the matrix 1205 - cols - the columns indicated 1206 1207 Output Parameters: 1208 + dnz - the array that will be passed to the matrix preallocation routines 1209 - onz - the other array passed to the matrix preallocation routines 1210 1211 Level: deprecated (since v3.19) 1212 1213 Notes: 1214 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1215 the use of this routine 1216 1217 Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1218 1219 This is a MACRO not a function because it uses variables declared in MatPreallocateBegin(). 1220 1221 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1222 `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1223 M*/ 1224 #define MatPreallocateSet(row, nc, cols, dnz, onz) \ 1225 PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \ 1226 if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \ 1227 else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 1228 }) 1229 1230 /*MC 1231 MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1232 inserted using a local number of the rows and columns 1233 1234 Synopsis: 1235 #include <petscmat.h> 1236 PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1237 1238 Not Collective 1239 1240 Input Parameters: 1241 + nrows - the number of rows indicated 1242 . rows - the indices of the rows 1243 . ncols - the number of columns in the matrix 1244 . cols - the columns indicated 1245 . dnz - the array that will be passed to the matrix preallocation routines 1246 - onz - the other array passed to the matrix preallocation routines 1247 1248 Level: deprecated (since v3.19) 1249 1250 Notes: 1251 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1252 the use of this routine 1253 1254 Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1255 1256 This is a MACRO not a function because it uses variables declared in MatPreallocateBegin(). 1257 1258 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`, 1259 `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1260 M*/ 1261 #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \ 1262 PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \ 1263 if (cols[__i] >= __end) onz[row - __rstart]++; \ 1264 else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 1265 }) 1266 1267 /*MC 1268 MatPreallocateLocation - An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists 1269 1270 Synopsis: 1271 #include <petscmat.h> 1272 PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz) 1273 1274 Not Collective 1275 1276 Input Parameters: 1277 + A - matrix 1278 . row - row where values exist (must be local to this process) 1279 . ncols - number of columns 1280 . cols - columns with nonzeros 1281 . dnz - the array that will be passed to the matrix preallocation routines 1282 - onz - the other array passed to the matrix preallocation routines 1283 1284 Level: deprecated (since v3.19) 1285 1286 Notes: 1287 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1288 the use of this routine 1289 1290 Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1291 1292 This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines. 1293 1294 .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1295 `MatPreallocateSymmetricSetLocalBlock()` 1296 M*/ 1297 #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz)) 1298 1299 /*MC 1300 MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per 1301 row in a matrix providing the data that one can use to correctly preallocate the matrix. 1302 1303 Synopsis: 1304 #include <petscmat.h> 1305 PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz) 1306 1307 Collective 1308 1309 Input Parameters: 1310 + dnz - the array that was be passed to the matrix preallocation routines 1311 - onz - the other array passed to the matrix preallocation routines 1312 1313 Level: deprecated (since v3.19) 1314 1315 Notes: 1316 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1317 the use of this routine 1318 1319 Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1320 1321 Developer Note: 1322 This is a MACRO not a function because it closes the { started in MatPreallocateBegin(). 1323 1324 .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1325 `MatPreallocateSymmetricSetLocalBlock()` 1326 M*/ 1327 #define MatPreallocateEnd(dnz, onz) \ 1328 PetscCall(PetscFree2(dnz, onz)); \ 1329 } \ 1330 while (0) 1331 1332 #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateEnd()", ) MatPreallocateEnd(__VA_ARGS__) 1333 1334 /* Routines unique to particular data structures */ 1335 PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *); 1336 1337 PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *); 1338 PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *); 1339 1340 PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]); 1341 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]); 1342 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1343 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1344 PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1345 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool); 1346 1347 #define MAT_SKIP_ALLOCATION -4 1348 1349 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1350 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1351 PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]); 1352 PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt); 1353 1354 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1355 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1356 PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1357 PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1358 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1359 PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1360 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1361 PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]); 1362 PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *); 1363 PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *); 1364 PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]); 1365 PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]); 1366 PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 1367 PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 1368 PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *); 1369 1370 PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *); 1371 PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt); 1372 PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatDenseSetLDA()", ) static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda) 1373 { 1374 return MatDenseSetLDA(A, lda); 1375 } 1376 PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *); 1377 1378 PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1379 1380 PETSC_EXTERN PetscErrorCode MatStoreValues(Mat); 1381 PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat); 1382 1383 PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *); 1384 PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *); 1385 /* 1386 These routines are not usually accessed directly, rather solving is 1387 done through the KSP and PC interfaces. 1388 */ 1389 1390 /*J 1391 MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used 1392 to reduce fill in sparse factorizations. 1393 1394 Level: beginner 1395 1396 Notes: 1397 If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one 1398 of its own. 1399 1400 There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()` 1401 1402 Developer Note: 1403 This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning` 1404 1405 .seealso: [](ch_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`, 1406 `PCFactorSetOrderingType()` 1407 J*/ 1408 typedef const char *MatOrderingType; 1409 #define MATORDERINGNATURAL "natural" 1410 #define MATORDERINGND "nd" 1411 #define MATORDERING1WD "1wd" 1412 #define MATORDERINGRCM "rcm" 1413 #define MATORDERINGQMD "qmd" 1414 #define MATORDERINGROWLENGTH "rowlength" 1415 #define MATORDERINGWBM "wbm" 1416 #define MATORDERINGSPECTRAL "spectral" 1417 #define MATORDERINGAMD "amd" /* only works if UMFPACK is installed with PETSc */ 1418 #define MATORDERINGMETISND "metisnd" /* only works if METIS is installed with PETSc */ 1419 #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */ 1420 #define MATORDERINGEXTERNAL "external" /* uses an ordering type internal to the factorization package */ 1421 1422 PETSC_EXTERN PetscErrorCode MatGetOrdering(Mat, MatOrderingType, IS *, IS *); 1423 PETSC_EXTERN PetscErrorCode MatGetOrderingList(PetscFunctionList *); 1424 PETSC_EXTERN PetscErrorCode MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *)); 1425 PETSC_EXTERN PetscFunctionList MatOrderingList; 1426 1427 #include "petscmatcoarsen.h" 1428 1429 PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS); 1430 PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *); 1431 1432 PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *); 1433 1434 /*S 1435 MatFactorShiftType - Type of numeric shift used for factorizations 1436 1437 Values: 1438 + `MAT_SHIFT_NONE` - do not shift the matrix diagonal entries 1439 . `MAT_SHIFT_NONZERO` - shift the entries to be non-zero 1440 . `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite 1441 - `MAT_SHIFT_INBLOCKS` - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ` 1442 1443 Level: intermediate 1444 1445 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()` 1446 S*/ 1447 typedef enum { 1448 MAT_SHIFT_NONE, 1449 MAT_SHIFT_NONZERO, 1450 MAT_SHIFT_POSITIVE_DEFINITE, 1451 MAT_SHIFT_INBLOCKS 1452 } MatFactorShiftType; 1453 PETSC_EXTERN const char *const MatFactorShiftTypes[]; 1454 PETSC_EXTERN const char *const MatFactorShiftTypesDetail[]; 1455 1456 /*S 1457 MatFactorError - indicates what type of error was generated in a matrix factorization 1458 1459 Values: 1460 + `MAT_FACTOR_NOERROR` - there was no error during the factorization 1461 . `MAT_FACTOR_STRUCT_ZEROPIVOT` - there was a missing entry in a diagonal location of the matrix 1462 . `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization 1463 . `MAT_FACTOR_OUTMEMORY` - the factorization has run out of memory 1464 - `MAT_FACTOR_OTHER` - some other error has occurred. 1465 1466 Level: intermediate 1467 1468 Note: 1469 When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason` 1470 1471 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`, 1472 `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason` 1473 S*/ 1474 typedef enum { 1475 MAT_FACTOR_NOERROR, 1476 MAT_FACTOR_STRUCT_ZEROPIVOT, 1477 MAT_FACTOR_NUMERIC_ZEROPIVOT, 1478 MAT_FACTOR_OUTMEMORY, 1479 MAT_FACTOR_OTHER 1480 } MatFactorError; 1481 1482 PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *); 1483 PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat); 1484 PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *); 1485 1486 /*S 1487 MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization 1488 1489 Level: developer 1490 1491 Note: 1492 You can use `MatFactorInfoInitialize()` to set default values. 1493 1494 Fortran Note: 1495 The data is available in a double precision arrays of size `MAT_FACTORINFO_SIZE` 1496 1497 .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, 1498 `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()` 1499 S*/ 1500 typedef struct { 1501 PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */ 1502 PetscReal usedt; 1503 PetscReal dt; /* drop tolerance */ 1504 PetscReal dtcol; /* tolerance for pivoting */ 1505 PetscReal dtcount; /* maximum nonzeros to be allowed per row */ 1506 PetscReal fill; /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */ 1507 PetscReal levels; /* ICC/ILU(levels) */ 1508 PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 1509 factorization may be faster if do not pivot */ 1510 PetscReal zeropivot; /* pivot is called zero if less than this */ 1511 PetscReal shifttype; /* type of shift added to matrix factor to prevent zero pivots */ 1512 PetscReal shiftamount; /* how large the shift is */ 1513 } MatFactorInfo; 1514 1515 PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *); 1516 PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *); 1517 PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 1518 PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *); 1519 PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *); 1520 PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *); 1521 PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 1522 PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 1523 PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 1524 PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *); 1525 PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *); 1526 PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *); 1527 PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 1528 PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *); 1529 PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *); 1530 PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec); 1531 PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec); 1532 PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec); 1533 PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec); 1534 PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec); 1535 PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec); 1536 PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs); 1537 PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat); 1538 1539 typedef enum { 1540 MAT_FACTOR_SCHUR_UNFACTORED, 1541 MAT_FACTOR_SCHUR_FACTORED, 1542 MAT_FACTOR_SCHUR_INVERTED 1543 } MatFactorSchurStatus; 1544 PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS); 1545 PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 1546 PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus); 1547 PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat); 1548 PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 1549 PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec); 1550 PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec); 1551 PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat); 1552 1553 PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat); 1554 /*E 1555 MatSORType - What type of (S)SOR to perform 1556 1557 Values: 1558 + `SOR_FORWARD_SWEEP` - do a sweep from the first row of the matrix to the last 1559 . `SOR_BACKWARD_SWEEP` - do a sweep from the last row to the first 1560 . `SOR_SYMMETRIC_SWEEP` - do a sweep from the first row to the last and then back to the first 1561 . `SOR_LOCAL_FORWARD_SWEEP` - each MPI rank does its own forward sweep with no communication 1562 . `SOR_LOCAL_BACKWARD_SWEEP` - each MPI rank does its own backward sweep with no communication 1563 . `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI rank does its own symmetric sweep with no communication 1564 . `SOR_ZERO_INITIAL_GUESS` - indicates the initial solution is zero so the sweep can avoid unneeded computation 1565 . `SOR_EISENSTAT` - apply the Eisentat application of SOR, see `PCEISENSTAT` 1566 . `SOR_APPLY_UPPER` - multiply by the upper triangular portion of the matrix 1567 - `SOR_APPLY_LOWER` - multiply by the lower triangular portion of the matrix 1568 1569 Level: beginner 1570 1571 Note: 1572 These may be bitwise ORd together 1573 1574 Developer Note: 1575 Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below 1576 1577 .seealso: [](ch_matrices), `MatSOR()` 1578 E*/ 1579 typedef enum { 1580 SOR_FORWARD_SWEEP = 1, 1581 SOR_BACKWARD_SWEEP = 2, 1582 SOR_SYMMETRIC_SWEEP = 3, 1583 SOR_LOCAL_FORWARD_SWEEP = 4, 1584 SOR_LOCAL_BACKWARD_SWEEP = 8, 1585 SOR_LOCAL_SYMMETRIC_SWEEP = 12, 1586 SOR_ZERO_INITIAL_GUESS = 16, 1587 SOR_EISENSTAT = 32, 1588 SOR_APPLY_UPPER = 64, 1589 SOR_APPLY_LOWER = 128 1590 } MatSORType; 1591 PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec); 1592 1593 /*S 1594 MatColoring - Object for managing the coloring of matrices. 1595 1596 Level: beginner 1597 1598 Notes: 1599 Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 1600 matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors). 1601 1602 Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This 1603 same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices. 1604 1605 .seealso: [](ch_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`, 1606 `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`, 1607 `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen` 1608 S*/ 1609 typedef struct _p_MatColoring *MatColoring; 1610 1611 /*J 1612 MatColoringType - String with the name of a PETSc matrix coloring 1613 1614 Level: beginner 1615 1616 .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring` 1617 J*/ 1618 typedef const char *MatColoringType; 1619 #define MATCOLORINGJP "jp" 1620 #define MATCOLORINGPOWER "power" 1621 #define MATCOLORINGNATURAL "natural" 1622 #define MATCOLORINGSL "sl" 1623 #define MATCOLORINGLF "lf" 1624 #define MATCOLORINGID "id" 1625 #define MATCOLORINGGREEDY "greedy" 1626 1627 /*E 1628 MatColoringWeightType - Type of weight scheme used for the coloring algorithm 1629 1630 Values: 1631 + `MAT_COLORING_RANDOM` - Random weights 1632 . `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering. 1633 - `MAT_COLORING_LF` - Last-first weighting. 1634 1635 Level: intermediate 1636 1637 .seealso: [](ch_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()` 1638 E*/ 1639 typedef enum { 1640 MAT_COLORING_WEIGHT_RANDOM, 1641 MAT_COLORING_WEIGHT_LEXICAL, 1642 MAT_COLORING_WEIGHT_LF, 1643 MAT_COLORING_WEIGHT_SL 1644 } MatColoringWeightType; 1645 1646 PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *); 1647 PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *); 1648 PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *); 1649 PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer); 1650 PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType); 1651 PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring); 1652 PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt); 1653 PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *); 1654 PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt); 1655 PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *); 1656 PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *); 1657 PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring)); 1658 PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *); 1659 PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType); 1660 PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *); 1661 PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm); 1662 PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring); 1663 PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatColoringTest()", ) static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring) 1664 { 1665 return MatColoringTest(matcoloring, iscoloring); 1666 } 1667 PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring); 1668 1669 /*S 1670 MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring 1671 1672 Level: beginner 1673 1674 Notes: 1675 This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()` 1676 1677 The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object 1678 1679 .seealso: [](ch_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()` 1680 S*/ 1681 typedef struct _p_MatFDColoring *MatFDColoring; 1682 1683 PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *); 1684 PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *); 1685 PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer); 1686 PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *); 1687 PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **); 1688 PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal); 1689 PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring); 1690 PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *); 1691 PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec); 1692 PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]); 1693 PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring); 1694 PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt); 1695 PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *); 1696 1697 /*S 1698 MatTransposeColoring - Object for computing a sparse matrix product C=A*B^T via coloring 1699 1700 Level: developer 1701 1702 .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()` 1703 S*/ 1704 typedef struct _p_MatTransposeColoring *MatTransposeColoring; 1705 1706 PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *); 1707 PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat); 1708 PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat); 1709 PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *); 1710 1711 /*S 1712 MatPartitioning - Object for managing the partitioning of a matrix or graph 1713 1714 Level: beginner 1715 1716 Note: 1717 There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations 1718 via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`) 1719 1720 Developers Note: 1721 It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed 1722 1723 .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`, 1724 `MatCoarsenType`, `MatCoarsenType` 1725 S*/ 1726 typedef struct _p_MatPartitioning *MatPartitioning; 1727 1728 /*J 1729 MatPartitioningType - String with the name of a PETSc matrix partitioning 1730 1731 Level: beginner 1732 dm 1733 .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`, 1734 `MatCoarsenType`, `MatCoarsenType` 1735 J*/ 1736 typedef const char *MatPartitioningType; 1737 #define MATPARTITIONINGCURRENT "current" 1738 #define MATPARTITIONINGAVERAGE "average" 1739 #define MATPARTITIONINGSQUARE "square" 1740 #define MATPARTITIONINGPARMETIS "parmetis" 1741 #define MATPARTITIONINGCHACO "chaco" 1742 #define MATPARTITIONINGPARTY "party" 1743 #define MATPARTITIONINGPTSCOTCH "ptscotch" 1744 #define MATPARTITIONINGHIERARCH "hierarch" 1745 1746 PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *); 1747 PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType); 1748 PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt); 1749 PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat); 1750 PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt); 1751 PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]); 1752 PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]); 1753 PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool); 1754 PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *); 1755 PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *); 1756 PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *); 1757 PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS); 1758 PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *); 1759 PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *); 1760 PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning)); 1761 PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer); 1762 PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]); 1763 PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning); 1764 PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *); 1765 1766 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part); 1767 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning); 1768 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *); 1769 1770 typedef enum { 1771 MP_CHACO_MULTILEVEL = 1, 1772 MP_CHACO_SPECTRAL = 2, 1773 MP_CHACO_LINEAR = 4, 1774 MP_CHACO_RANDOM = 5, 1775 MP_CHACO_SCATTERED = 6 1776 } MPChacoGlobalType; 1777 PETSC_EXTERN const char *const MPChacoGlobalTypes[]; 1778 typedef enum { 1779 MP_CHACO_KERNIGHAN = 1, 1780 MP_CHACO_NONE = 2 1781 } MPChacoLocalType; 1782 PETSC_EXTERN const char *const MPChacoLocalTypes[]; 1783 typedef enum { 1784 MP_CHACO_LANCZOS = 0, 1785 MP_CHACO_RQI = 1 1786 } MPChacoEigenType; 1787 PETSC_EXTERN const char *const MPChacoEigenTypes[]; 1788 1789 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType); 1790 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *); 1791 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType); 1792 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *); 1793 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal); 1794 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType); 1795 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *); 1796 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal); 1797 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *); 1798 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt); 1799 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *); 1800 1801 #define MP_PARTY_OPT "opt" 1802 #define MP_PARTY_LIN "lin" 1803 #define MP_PARTY_SCA "sca" 1804 #define MP_PARTY_RAN "ran" 1805 #define MP_PARTY_GBF "gbf" 1806 #define MP_PARTY_GCF "gcf" 1807 #define MP_PARTY_BUB "bub" 1808 #define MP_PARTY_DEF "def" 1809 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *); 1810 #define MP_PARTY_HELPFUL_SETS "hs" 1811 #define MP_PARTY_KERNIGHAN_LIN "kl" 1812 #define MP_PARTY_NONE "no" 1813 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *); 1814 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal); 1815 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool); 1816 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool); 1817 1818 typedef enum { 1819 MP_PTSCOTCH_DEFAULT, 1820 MP_PTSCOTCH_QUALITY, 1821 MP_PTSCOTCH_SPEED, 1822 MP_PTSCOTCH_BALANCE, 1823 MP_PTSCOTCH_SAFETY, 1824 MP_PTSCOTCH_SCALABILITY 1825 } MPPTScotchStrategyType; 1826 PETSC_EXTERN const char *const MPPTScotchStrategyTypes[]; 1827 1828 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal); 1829 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *); 1830 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType); 1831 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *); 1832 1833 /* 1834 * hierarchical partitioning 1835 */ 1836 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *); 1837 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *); 1838 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt); 1839 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt); 1840 1841 PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *); 1842 1843 /* 1844 If you add entries here you must also add them to src/mat/f90-mod/petscmat.h 1845 If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx 1846 */ 1847 typedef enum { 1848 MATOP_SET_VALUES = 0, 1849 MATOP_GET_ROW = 1, 1850 MATOP_RESTORE_ROW = 2, 1851 MATOP_MULT = 3, 1852 MATOP_MULT_ADD = 4, 1853 MATOP_MULT_TRANSPOSE = 5, 1854 MATOP_MULT_TRANSPOSE_ADD = 6, 1855 MATOP_SOLVE = 7, 1856 MATOP_SOLVE_ADD = 8, 1857 MATOP_SOLVE_TRANSPOSE = 9, 1858 MATOP_SOLVE_TRANSPOSE_ADD = 10, 1859 MATOP_LUFACTOR = 11, 1860 MATOP_CHOLESKYFACTOR = 12, 1861 MATOP_SOR = 13, 1862 MATOP_TRANSPOSE = 14, 1863 MATOP_GETINFO = 15, 1864 MATOP_EQUAL = 16, 1865 MATOP_GET_DIAGONAL = 17, 1866 MATOP_DIAGONAL_SCALE = 18, 1867 MATOP_NORM = 19, 1868 MATOP_ASSEMBLY_BEGIN = 20, 1869 MATOP_ASSEMBLY_END = 21, 1870 MATOP_SET_OPTION = 22, 1871 MATOP_ZERO_ENTRIES = 23, 1872 MATOP_ZERO_ROWS = 24, 1873 MATOP_LUFACTOR_SYMBOLIC = 25, 1874 MATOP_LUFACTOR_NUMERIC = 26, 1875 MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27, 1876 MATOP_CHOLESKY_FACTOR_NUMERIC = 28, 1877 MATOP_SETUP = 29, 1878 MATOP_ILUFACTOR_SYMBOLIC = 30, 1879 MATOP_ICCFACTOR_SYMBOLIC = 31, 1880 MATOP_GET_DIAGONAL_BLOCK = 32, 1881 MATOP_SET_INF = 33, 1882 MATOP_DUPLICATE = 34, 1883 MATOP_FORWARD_SOLVE = 35, 1884 MATOP_BACKWARD_SOLVE = 36, 1885 MATOP_ILUFACTOR = 37, 1886 MATOP_ICCFACTOR = 38, 1887 MATOP_AXPY = 39, 1888 MATOP_CREATE_SUBMATRICES = 40, 1889 MATOP_INCREASE_OVERLAP = 41, 1890 MATOP_GET_VALUES = 42, 1891 MATOP_COPY = 43, 1892 MATOP_GET_ROW_MAX = 44, 1893 MATOP_SCALE = 45, 1894 MATOP_SHIFT = 46, 1895 MATOP_DIAGONAL_SET = 47, 1896 MATOP_ZERO_ROWS_COLUMNS = 48, 1897 MATOP_SET_RANDOM = 49, 1898 MATOP_GET_ROW_IJ = 50, 1899 MATOP_RESTORE_ROW_IJ = 51, 1900 MATOP_GET_COLUMN_IJ = 52, 1901 MATOP_RESTORE_COLUMN_IJ = 53, 1902 MATOP_FDCOLORING_CREATE = 54, 1903 MATOP_COLORING_PATCH = 55, 1904 MATOP_SET_UNFACTORED = 56, 1905 MATOP_PERMUTE = 57, 1906 MATOP_SET_VALUES_BLOCKED = 58, 1907 MATOP_CREATE_SUBMATRIX = 59, 1908 MATOP_DESTROY = 60, 1909 MATOP_VIEW = 61, 1910 MATOP_CONVERT_FROM = 62, 1911 /* MATOP_PLACEHOLDER_63=63 */ 1912 MATOP_MATMAT_MULT_SYMBOLIC = 64, 1913 MATOP_MATMAT_MULT_NUMERIC = 65, 1914 MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66, 1915 MATOP_SET_VALUES_LOCAL = 67, 1916 MATOP_ZERO_ROWS_LOCAL = 68, 1917 MATOP_GET_ROW_MAX_ABS = 69, 1918 MATOP_GET_ROW_MIN_ABS = 70, 1919 MATOP_CONVERT = 71, 1920 MATOP_HAS_OPERATION = 72, 1921 /* MATOP_PLACEHOLDER_73=73, */ 1922 MATOP_SET_VALUES_ADIFOR = 74, 1923 MATOP_FD_COLORING_APPLY = 75, 1924 MATOP_SET_FROM_OPTIONS = 76, 1925 /* MATOP_PLACEHOLDER_77=77, */ 1926 /* MATOP_PLACEHOLDER_78=78, */ 1927 MATOP_FIND_ZERO_DIAGONALS = 79, 1928 MATOP_MULT_MULTIPLE = 80, 1929 MATOP_SOLVE_MULTIPLE = 81, 1930 MATOP_GET_INERTIA = 82, 1931 MATOP_LOAD = 83, 1932 MATOP_IS_SYMMETRIC = 84, 1933 MATOP_IS_HERMITIAN = 85, 1934 MATOP_IS_STRUCTURALLY_SYMMETRIC = 86, 1935 MATOP_SET_VALUES_BLOCKEDLOCAL = 87, 1936 MATOP_CREATE_VECS = 88, 1937 /* MATOP_PLACEHOLDER_89=89, */ 1938 MATOP_MAT_MULT_SYMBOLIC = 90, 1939 MATOP_MAT_MULT_NUMERIC = 91, 1940 /* MATOP_PLACEHOLDER_92=92, */ 1941 MATOP_PTAP_SYMBOLIC = 93, 1942 MATOP_PTAP_NUMERIC = 94, 1943 /* MATOP_PLACEHOLDER_95=95, */ 1944 MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96, 1945 MATOP_MAT_TRANSPOSE_MULT_NUMER = 97, 1946 MATOP_BIND_TO_CPU = 98, 1947 MATOP_PRODUCTSETFROMOPTIONS = 99, 1948 MATOP_PRODUCTSYMBOLIC = 100, 1949 MATOP_PRODUCTNUMERIC = 101, 1950 MATOP_CONJUGATE = 102, 1951 MATOP_VIEW_NATIVE = 103, 1952 MATOP_SET_VALUES_ROW = 104, 1953 MATOP_REAL_PART = 105, 1954 MATOP_IMAGINARY_PART = 106, 1955 MATOP_GET_ROW_UPPER_TRIANGULAR = 107, 1956 MATOP_RESTORE_ROW_UPPER_TRIANG = 108, 1957 MATOP_MAT_SOLVE = 109, 1958 MATOP_MAT_SOLVE_TRANSPOSE = 110, 1959 MATOP_GET_ROW_MIN = 111, 1960 MATOP_GET_COLUMN_VECTOR = 112, 1961 MATOP_MISSING_DIAGONAL = 113, 1962 MATOP_GET_SEQ_NONZERO_STRUCTUR = 114, 1963 MATOP_CREATE = 115, 1964 MATOP_GET_GHOSTS = 116, 1965 MATOP_GET_LOCAL_SUB_MATRIX = 117, 1966 MATOP_RESTORE_LOCALSUB_MATRIX = 118, 1967 MATOP_MULT_DIAGONAL_BLOCK = 119, 1968 MATOP_HERMITIAN_TRANSPOSE = 120, 1969 MATOP_MULT_HERMITIAN_TRANSPOSE = 121, 1970 MATOP_MULT_HERMITIAN_TRANS_ADD = 122, 1971 MATOP_GET_MULTI_PROC_BLOCK = 123, 1972 MATOP_FIND_NONZERO_ROWS = 124, 1973 MATOP_GET_COLUMN_NORMS = 125, 1974 MATOP_INVERT_BLOCK_DIAGONAL = 126, 1975 MATOP_INVERT_VBLOCK_DIAGONAL = 127, 1976 MATOP_CREATE_SUB_MATRICES_MPI = 128, 1977 MATOP_SET_VALUES_BATCH = 129, 1978 /* MATOP_PLACEHOLDER_130=130, */ 1979 MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131, 1980 MATOP_TRANSPOSE_MAT_MULT_NUMER = 132, 1981 MATOP_TRANSPOSE_COLORING_CREAT = 133, 1982 MATOP_TRANS_COLORING_APPLY_SPT = 134, 1983 MATOP_TRANS_COLORING_APPLY_DEN = 135, 1984 /* MATOP_PLACEHOLDER_136=136, */ 1985 MATOP_RART_SYMBOLIC = 137, 1986 MATOP_RART_NUMERIC = 138, 1987 MATOP_SET_BLOCK_SIZES = 139, 1988 MATOP_AYPX = 140, 1989 MATOP_RESIDUAL = 141, 1990 MATOP_FDCOLORING_SETUP = 142, 1991 MATOP_FIND_OFFBLOCK_ENTRIES = 143, 1992 MATOP_MPICONCATENATESEQ = 144, 1993 MATOP_DESTROYSUBMATRICES = 145, 1994 MATOP_TRANSPOSE_SOLVE = 146, 1995 MATOP_GET_VALUES_LOCAL = 147 1996 } MatOperation; 1997 PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void)); 1998 PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void)); 1999 PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *); 2000 PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *); 2001 PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatProductClear()", ) static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A) 2002 { 2003 return MatProductClear(A); 2004 } 2005 PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void)); 2006 PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void)); 2007 PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *); 2008 PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *)); 2009 PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType); 2010 PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 2011 PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 2012 PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat); 2013 PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType); 2014 PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *); 2015 2016 /* 2017 Codes for matrices stored on disk. By default they are 2018 stored in a universal format. By changing the format with 2019 PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will 2020 be stored in a way natural for the matrix, for example dense matrices 2021 would be stored as dense. Matrices stored this way may only be 2022 read into matrices of the same type. 2023 */ 2024 #define MATRIX_BINARY_FORMAT_DENSE -1 2025 2026 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal); 2027 2028 PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType); 2029 PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 2030 PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool); 2031 PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool); 2032 PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *); 2033 PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *); 2034 PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat); 2035 PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 2036 PETSC_EXTERN PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatConvert()", ) PetscErrorCode MatISGetMPIXAIJ(Mat, MatReuse, Mat *); 2037 2038 /*S 2039 MatNullSpace - Object that removes a null space from a vector, i.e. 2040 orthogonalizes the vector to a subspace 2041 2042 Level: advanced 2043 2044 .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()` 2045 S*/ 2046 typedef struct _p_MatNullSpace *MatNullSpace; 2047 2048 PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *); 2049 PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *); 2050 PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *); 2051 PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec); 2052 PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *); 2053 PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *); 2054 PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace); 2055 PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace); 2056 PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace); 2057 PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *); 2058 PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *); 2059 PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer); 2060 PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **); 2061 PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *); 2062 2063 PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS); 2064 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal); 2065 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *); 2066 2067 PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *); 2068 PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *); 2069 PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *); 2070 2071 PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *); 2072 PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *); 2073 2074 PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperator()", ) static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B) 2075 { 2076 return MatComputeOperator(A, PETSC_NULLPTR, B); 2077 } 2078 PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperatorTranspose()", ) static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B) 2079 { 2080 return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B); 2081 } 2082 2083 PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *); 2084 PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *); 2085 PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **); 2086 PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2087 PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **); 2088 PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **); 2089 PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **); 2090 PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2091 PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **); 2092 PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **); 2093 PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat); 2094 PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]); 2095 PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]); 2096 PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *); 2097 2098 PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec); 2099 2100 PETSC_EXTERN PetscErrorCode MatMFFDInitializePackage(void); 2101 PETSC_EXTERN PetscErrorCode MatMFFDFinalizePackage(void); 2102 2103 PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2104 PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec); 2105 PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *); 2106 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *)); 2107 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec)); 2108 PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt); 2109 PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat); 2110 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal); 2111 PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt); 2112 PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *); 2113 PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]); 2114 PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *); 2115 PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *); 2116 2117 /*S 2118 MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free 2119 Jacobian vector products 2120 2121 Level: developer 2122 2123 Notes: 2124 `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure 2125 2126 MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure 2127 2128 This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator` 2129 2130 .seealso: [](ch_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`, 2131 `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator` 2132 S*/ 2133 typedef struct _p_MatMFFD *MatMFFD; 2134 2135 /*J 2136 MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function 2137 2138 Values: 2139 + `MATMFFD_DS` - an algorithm described by Dennis and Schnabel 2140 - `MATMFFD_WP` - the Walker-Pernice strategy. 2141 2142 Level: beginner 2143 2144 .seealso: [](ch_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()` 2145 J*/ 2146 typedef const char *MatMFFDType; 2147 #define MATMFFD_DS "ds" 2148 #define MATMFFD_WP "wp" 2149 2150 PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType); 2151 PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD)); 2152 2153 PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal); 2154 PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool); 2155 2156 PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType); 2157 2158 PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *); 2159 PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *); 2160 2161 #ifdef PETSC_HAVE_H2OPUS 2162 PETSC_EXTERN_TYPEDEF typedef PetscScalar (*MatH2OpusKernel)(PetscInt, PetscReal[], PetscReal[], void *); 2163 PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernel, void *, PetscReal, PetscInt, PetscInt, Mat *); 2164 PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *); 2165 PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal); 2166 PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat); 2167 PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal); 2168 PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool); 2169 PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *); 2170 PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *); 2171 PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *); 2172 PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar); 2173 #endif 2174 2175 #ifdef PETSC_HAVE_HTOOL 2176 PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatHtoolKernel)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *); 2177 PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernel, void *, Mat *); 2178 PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernel, void *); 2179 PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *); 2180 PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *); 2181 PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool); 2182 2183 /*E 2184 MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL` 2185 2186 Values: 2187 + `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation 2188 . `MAT_HTOOL_COMPRESSOR_FULL_ACA` - full adaptive cross approximation 2189 - `MAT_HTOOL_COMPRESSOR_SVD` - singular value decomposition 2190 2191 Level: intermediate 2192 2193 .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType` 2194 E*/ 2195 typedef enum { 2196 MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA, 2197 MAT_HTOOL_COMPRESSOR_FULL_ACA, 2198 MAT_HTOOL_COMPRESSOR_SVD 2199 } MatHtoolCompressorType; 2200 2201 /*E 2202 MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL` 2203 2204 Values: 2205 + `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default) - axis computed via principle component analysis, split uniformly 2206 . `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC` - axis computed via principle component analysis, split barycentrically 2207 . `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR` - axis along the largest extent of the bounding box, split uniformly 2208 - `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically 2209 2210 Level: intermediate 2211 2212 Note: 2213 Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types 2214 2215 .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType` 2216 E*/ 2217 typedef enum { 2218 MAT_HTOOL_CLUSTERING_PCA_REGULAR, 2219 MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC, 2220 MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR, 2221 MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC 2222 } MatHtoolClusteringType; 2223 #endif 2224 2225 #ifdef PETSC_HAVE_MUMPS 2226 PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt); 2227 PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *); 2228 PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal); 2229 PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *); 2230 2231 PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *); 2232 PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *); 2233 PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *); 2234 PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *); 2235 PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **); 2236 PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat); 2237 PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat); 2238 #endif 2239 2240 #ifdef PETSC_HAVE_MKL_PARDISO 2241 PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt); 2242 #endif 2243 2244 #ifdef PETSC_HAVE_MKL_CPARDISO 2245 PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt); 2246 #endif 2247 2248 #ifdef PETSC_HAVE_SUPERLU 2249 PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal); 2250 #endif 2251 2252 #ifdef PETSC_HAVE_SUPERLU_DIST 2253 PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *); 2254 #endif 2255 2256 #ifdef PETSC_HAVE_STRUMPACK 2257 /*E 2258 MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK`` 2259 2260 Values: 2261 + `MAT_STRUMPACK_NATURAL` - use the current ordering 2262 . `MAT_STRUMPACK_METIS` - use MeTis to compute an ordering 2263 . `MAT_STRUMPACK_PARMETIS` - use ParMeTis to compute an ordering 2264 . `MAT_STRUMPACK_SCOTCH` - use Scotch to compute an ordering 2265 . `MAT_STRUMPACK_PTSCOTCH` - use parallel Scotch to compute an ordering 2266 - `MAT_STRUMPACK_RCM` - use an RCM ordering 2267 2268 Level: intermediate 2269 2270 Developer Note: 2271 Should be called `MatSTRUMPACKReorderingType` 2272 2273 .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetHSSRelTol()`, `MatSTRUMPACKSetReordering()` 2274 E*/ 2275 typedef enum { 2276 MAT_STRUMPACK_NATURAL = 0, 2277 MAT_STRUMPACK_METIS = 1, 2278 MAT_STRUMPACK_PARMETIS = 2, 2279 MAT_STRUMPACK_SCOTCH = 3, 2280 MAT_STRUMPACK_PTSCOTCH = 4, 2281 MAT_STRUMPACK_RCM = 5 2282 } MatSTRUMPACKReordering; 2283 2284 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering); 2285 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool); 2286 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSRelTol(Mat, PetscReal); 2287 PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSTRUMPACKSetHSSRelTol()", ) static inline PetscErrorCode MatSTRUMPACKSetHSSRelCompTol(Mat mat, PetscReal rtol) 2288 { 2289 return MatSTRUMPACKSetHSSRelTol(mat, rtol); 2290 } 2291 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSAbsTol(Mat, PetscReal); 2292 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMinSepSize(Mat, PetscInt); 2293 PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSTRUMPACKSetHSSMinSepSize()", ) static inline PetscErrorCode MatSTRUMPACKSetHSSMinSize(Mat mat, PetscInt hssminsize) 2294 { 2295 return MatSTRUMPACKSetHSSMinSepSize(mat, hssminsize); 2296 } 2297 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMaxRank(Mat, PetscInt); 2298 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSLeafSize(Mat, PetscInt); 2299 #endif 2300 2301 PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool); 2302 PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *); 2303 PETSC_DEPRECATED_FUNCTION(3, 13, 0, "MatBindToCPU()", ) static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg) 2304 { 2305 return MatBindToCPU(A, flg); 2306 } 2307 PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool); 2308 PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *); 2309 2310 #ifdef PETSC_HAVE_CUDA 2311 /*E 2312 MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU) 2313 matrices. 2314 2315 Values: 2316 + `MAT_CUSPARSE_CSR` - Compressed Sparse Row 2317 . `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later). 2318 - `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later). 2319 2320 Level: intermediate 2321 2322 .seealso: [](ch_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation` 2323 E*/ 2324 2325 typedef enum { 2326 MAT_CUSPARSE_CSR, 2327 MAT_CUSPARSE_ELL, 2328 MAT_CUSPARSE_HYB 2329 } MatCUSPARSEStorageFormat; 2330 2331 /* these will be strings associated with enumerated type defined above */ 2332 PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[]; 2333 2334 /*E 2335 MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU) 2336 matrices whose operation should use a particular storage format. 2337 2338 Values: 2339 + `MAT_CUSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel MatMult 2340 . `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel MatMult 2341 . `MAT_CUSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) MatMult 2342 - `MAT_CUSPARSE_ALL` - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices 2343 2344 Level: intermediate 2345 2346 .seealso: [](ch_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat` 2347 E*/ 2348 typedef enum { 2349 MAT_CUSPARSE_MULT_DIAG, 2350 MAT_CUSPARSE_MULT_OFFDIAG, 2351 MAT_CUSPARSE_MULT, 2352 MAT_CUSPARSE_ALL 2353 } MatCUSPARSEFormatOperation; 2354 2355 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2356 PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2357 PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat); 2358 PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool); 2359 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 2360 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 2361 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **); 2362 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **); 2363 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **); 2364 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **); 2365 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **); 2366 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **); 2367 2368 PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 2369 PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 2370 PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **); 2371 PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **); 2372 PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **); 2373 PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **); 2374 PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **); 2375 PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **); 2376 PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *); 2377 PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *); 2378 PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat); 2379 PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *); 2380 2381 PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2382 PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2383 #endif 2384 2385 #ifdef PETSC_HAVE_HIP 2386 /*E 2387 MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU) 2388 matrices. 2389 2390 Values: 2391 + `MAT_HIPSPARSE_CSR` - Compressed Sparse Row 2392 . `MAT_HIPSPARSE_ELL` - Ellpack 2393 - `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format 2394 2395 Level: intermediate 2396 2397 .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation` 2398 E*/ 2399 2400 typedef enum { 2401 MAT_HIPSPARSE_CSR, 2402 MAT_HIPSPARSE_ELL, 2403 MAT_HIPSPARSE_HYB 2404 } MatHIPSPARSEStorageFormat; 2405 2406 /* these will be strings associated with enumerated type defined above */ 2407 PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[]; 2408 2409 /*E 2410 MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU) 2411 matrices whose operation should use a particular storage format. 2412 2413 Values: 2414 + `MAT_HIPSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()` 2415 . `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel `MatMult()` 2416 . `MAT_HIPSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()` 2417 - `MAT_HIPSPARSE_ALL` - sets the storage format for all HIPSPARSE (GPU) matrices 2418 2419 Level: intermediate 2420 2421 .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat` 2422 E*/ 2423 typedef enum { 2424 MAT_HIPSPARSE_MULT_DIAG, 2425 MAT_HIPSPARSE_MULT_OFFDIAG, 2426 MAT_HIPSPARSE_MULT, 2427 MAT_HIPSPARSE_ALL 2428 } MatHIPSPARSEFormatOperation; 2429 2430 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2431 PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2432 PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat); 2433 PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool); 2434 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 2435 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 2436 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **); 2437 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **); 2438 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **); 2439 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **); 2440 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **); 2441 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **); 2442 2443 PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 2444 PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 2445 PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **); 2446 PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **); 2447 PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **); 2448 PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **); 2449 PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **); 2450 PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **); 2451 PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *); 2452 PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *); 2453 PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat); 2454 PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *); 2455 #endif 2456 2457 #if defined(PETSC_HAVE_VIENNACL) 2458 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2459 PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2460 #endif 2461 2462 #if PetscDefined(HAVE_KOKKOS) 2463 PETSC_EXTERN PetscErrorCode MatCreateAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2464 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2465 #endif 2466 2467 #if defined(PETSC_HAVE_FFTW) 2468 PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec); 2469 PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec); 2470 PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *); 2471 #endif 2472 2473 #if defined(PETSC_HAVE_SCALAPACK) 2474 PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2475 PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt); 2476 PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *); 2477 #endif 2478 2479 PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *); 2480 PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *); 2481 PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]); 2482 PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]); 2483 PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***); 2484 PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *); 2485 PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType); 2486 PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]); 2487 PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat); 2488 2489 PETSC_EXTERN PetscErrorCode MatFilter(Mat, PetscReal, PetscBool, PetscBool); 2490 PETSC_DEPRECATED_FUNCTION(3, 20, 0, "MatFilter()", ) static inline PetscErrorCode MatChop(Mat A, PetscReal tol) 2491 { 2492 return MatFilter(A, tol, PETSC_FALSE, PETSC_FALSE); 2493 } 2494 PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *); 2495 2496 PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **); 2497 2498 PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat); 2499 2500 PETSC_INTERN PetscErrorCode MatHeaderMerge(Mat, Mat *); 2501 PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *); 2502 2503 PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *); 2504 2505 PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, Mat *); 2506 PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat, PetscBool); 2507 2508 PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *); 2509 #endif 2510