xref: /petsc/include/petscmat.h (revision 9c5460f9064ca60dd71a234a1f6faf93e7a6b0c9)
1 /*
2      Include file for the matrix component of PETSc
3 */
4 #ifndef PETSCMAT_H
5 #define PETSCMAT_H
6 
7 #include <petscvec.h>
8 
9 /* SUBMANSEC = Mat */
10 
11 /*S
12      Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without
13            an explicit sparse representation (such as matrix-free operators)
14 
15    Level: beginner
16 
17    Note:
18    See [](doc_matrix), [](ch_matrices) and `MatType` for available matrix types
19 
20 .seealso: [](doc_matrix), [](ch_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()`
21 S*/
22 typedef struct _p_Mat *Mat;
23 
24 /*J
25     MatType - String with the name of a PETSc matrix type
26 
27    Level: beginner
28 
29    Note:
30    [](doc_matrix) for a table of available matrix types
31 
32 .seealso: [](doc_matrix), [](ch_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()`
33 J*/
34 typedef const char *MatType;
35 #define MATSAME                      "same"
36 #define MATMAIJ                      "maij"
37 #define MATSEQMAIJ                   "seqmaij"
38 #define MATMPIMAIJ                   "mpimaij"
39 #define MATKAIJ                      "kaij"
40 #define MATSEQKAIJ                   "seqkaij"
41 #define MATMPIKAIJ                   "mpikaij"
42 #define MATIS                        "is"
43 #define MATAIJ                       "aij"
44 #define MATSEQAIJ                    "seqaij"
45 #define MATMPIAIJ                    "mpiaij"
46 #define MATAIJCRL                    "aijcrl"
47 #define MATSEQAIJCRL                 "seqaijcrl"
48 #define MATMPIAIJCRL                 "mpiaijcrl"
49 #define MATAIJCUSPARSE               "aijcusparse"
50 #define MATSEQAIJCUSPARSE            "seqaijcusparse"
51 #define MATMPIAIJCUSPARSE            "mpiaijcusparse"
52 #define MATAIJHIPSPARSE              "aijhipsparse"
53 #define MATSEQAIJHIPSPARSE           "seqaijhipsparse"
54 #define MATMPIAIJHIPSPARSE           "mpiaijhipsparse"
55 #define MATAIJKOKKOS                 "aijkokkos"
56 #define MATSEQAIJKOKKOS              "seqaijkokkos"
57 #define MATMPIAIJKOKKOS              "mpiaijkokkos"
58 #define MATAIJVIENNACL               "aijviennacl"
59 #define MATSEQAIJVIENNACL            "seqaijviennacl"
60 #define MATMPIAIJVIENNACL            "mpiaijviennacl"
61 #define MATAIJPERM                   "aijperm"
62 #define MATSEQAIJPERM                "seqaijperm"
63 #define MATMPIAIJPERM                "mpiaijperm"
64 #define MATAIJSELL                   "aijsell"
65 #define MATSEQAIJSELL                "seqaijsell"
66 #define MATMPIAIJSELL                "mpiaijsell"
67 #define MATAIJMKL                    "aijmkl"
68 #define MATSEQAIJMKL                 "seqaijmkl"
69 #define MATMPIAIJMKL                 "mpiaijmkl"
70 #define MATBAIJMKL                   "baijmkl"
71 #define MATSEQBAIJMKL                "seqbaijmkl"
72 #define MATMPIBAIJMKL                "mpibaijmkl"
73 #define MATSHELL                     "shell"
74 #define MATCENTERING                 "centering"
75 #define MATDENSE                     "dense"
76 #define MATDENSECUDA                 "densecuda"
77 #define MATDENSEHIP                  "densehip"
78 #define MATSEQDENSE                  "seqdense"
79 #define MATSEQDENSECUDA              "seqdensecuda"
80 #define MATSEQDENSEHIP               "seqdensehip"
81 #define MATMPIDENSE                  "mpidense"
82 #define MATMPIDENSECUDA              "mpidensecuda"
83 #define MATMPIDENSEHIP               "mpidensehip"
84 #define MATELEMENTAL                 "elemental"
85 #define MATSCALAPACK                 "scalapack"
86 #define MATBAIJ                      "baij"
87 #define MATSEQBAIJ                   "seqbaij"
88 #define MATMPIBAIJ                   "mpibaij"
89 #define MATMPIADJ                    "mpiadj"
90 #define MATSBAIJ                     "sbaij"
91 #define MATSEQSBAIJ                  "seqsbaij"
92 #define MATMPISBAIJ                  "mpisbaij"
93 #define MATMFFD                      "mffd"
94 #define MATNORMAL                    "normal"
95 #define MATNORMALHERMITIAN           "normalh"
96 #define MATLRC                       "lrc"
97 #define MATSCATTER                   "scatter"
98 #define MATBLOCKMAT                  "blockmat"
99 #define MATCOMPOSITE                 "composite"
100 #define MATFFT                       "fft"
101 #define MATFFTW                      "fftw"
102 #define MATSEQCUFFT                  "seqcufft"
103 #define MATSEQHIPFFT                 "seqhipfft"
104 #define MATTRANSPOSEMAT              PETSC_DEPRECATED_MACRO(3, 18, 0, "MATTRANSPOSEVIRTUAL", ) "transpose"
105 #define MATTRANSPOSEVIRTUAL          "transpose"
106 #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose"
107 #define MATSCHURCOMPLEMENT           "schurcomplement"
108 #define MATPYTHON                    "python"
109 #define MATHYPRE                     "hypre"
110 #define MATHYPRESTRUCT               "hyprestruct"
111 #define MATHYPRESSTRUCT              "hypresstruct"
112 #define MATSUBMATRIX                 "submatrix"
113 #define MATLOCALREF                  "localref"
114 #define MATNEST                      "nest"
115 #define MATPREALLOCATOR              "preallocator"
116 #define MATSELL                      "sell"
117 #define MATSEQSELL                   "seqsell"
118 #define MATMPISELL                   "mpisell"
119 #define MATSELLCUDA                  "sellcuda"
120 #define MATSEQSELLCUDA               "seqsellcuda"
121 #define MATMPISELLCUDA               "mpisellcuda"
122 #define MATDUMMY                     "dummy"
123 #define MATLMVM                      "lmvm"
124 #define MATLMVMDFP                   "lmvmdfp"
125 #define MATLMVMBFGS                  "lmvmbfgs"
126 #define MATLMVMSR1                   "lmvmsr1"
127 #define MATLMVMBROYDEN               "lmvmbroyden"
128 #define MATLMVMBADBROYDEN            "lmvmbadbroyden"
129 #define MATLMVMSYMBROYDEN            "lmvmsymbroyden"
130 #define MATLMVMSYMBADBROYDEN         "lmvmsymbadbroyden"
131 #define MATLMVMDIAGBROYDEN           "lmvmdiagbroyden"
132 #define MATCONSTANTDIAGONAL          "constantdiagonal"
133 #define MATDIAGONAL                  "diagonal"
134 #define MATHTOOL                     "htool"
135 #define MATH2OPUS                    "h2opus"
136 
137 /*J
138     MatSolverType - String with the name of a PETSc factorization based matrix solver type.
139 
140     For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc
141 
142    Level: beginner
143 
144    Note:
145    `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as
146    a ./configure option to install them
147 
148 .seealso: [](sec_matfactor), [](ch_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()`
149 J*/
150 typedef const char *MatSolverType;
151 #define MATSOLVERSUPERLU      "superlu"
152 #define MATSOLVERSUPERLU_DIST "superlu_dist"
153 #define MATSOLVERSTRUMPACK    "strumpack"
154 #define MATSOLVERUMFPACK      "umfpack"
155 #define MATSOLVERCHOLMOD      "cholmod"
156 #define MATSOLVERKLU          "klu"
157 #define MATSOLVERELEMENTAL    "elemental"
158 #define MATSOLVERSCALAPACK    "scalapack"
159 #define MATSOLVERESSL         "essl"
160 #define MATSOLVERLUSOL        "lusol"
161 #define MATSOLVERMUMPS        "mumps"
162 #define MATSOLVERMKL_PARDISO  "mkl_pardiso"
163 #define MATSOLVERMKL_CPARDISO "mkl_cpardiso"
164 #define MATSOLVERPASTIX       "pastix"
165 #define MATSOLVERMATLAB       "matlab"
166 #define MATSOLVERPETSC        "petsc"
167 #define MATSOLVERBAS          "bas"
168 #define MATSOLVERCUSPARSE     "cusparse"
169 #define MATSOLVERCUDA         "cuda"
170 #define MATSOLVERHIPSPARSE    "hipsparse"
171 #define MATSOLVERHIP          "hip"
172 #define MATSOLVERKOKKOS       "kokkos"
173 #define MATSOLVERSPQR         "spqr"
174 
175 /*E
176     MatFactorType - indicates what type of factorization is requested
177 
178     Values:
179 +  `MAT_FACTOR_LU` - LU factorization
180 .  `MAT_FACTOR_CHOLESKY` - Cholesky factorization
181 .  `MAT_FACTOR_ILU` - ILU factorization
182 .  `MAT_FACTOR_ICC` - incomplete Cholesky factorization
183 .  `MAT_FACTOR_ILUDT` - ILU factorization with drop tolerance
184 -  `MAT_FACTOR_QR` - QR factorization
185 
186     Level: beginner
187 
188 .seealso: [](ch_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()`
189 E*/
190 typedef enum {
191   MAT_FACTOR_NONE,
192   MAT_FACTOR_LU,
193   MAT_FACTOR_CHOLESKY,
194   MAT_FACTOR_ILU,
195   MAT_FACTOR_ICC,
196   MAT_FACTOR_ILUDT,
197   MAT_FACTOR_QR,
198   MAT_FACTOR_NUM_TYPES
199 } MatFactorType;
200 PETSC_EXTERN const char *const MatFactorTypes[];
201 
202 PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *);
203 PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *);
204 PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *);
205 PETSC_DEPRECATED_FUNCTION(3, 15, 0, "MatFactorGetCanUseOrdering()", ) static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b)
206 {
207   return MatFactorGetCanUseOrdering(A, b);
208 }
209 PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *);
210 PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *);
211 PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType);
212 PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatSolverFunction)(Mat, MatFactorType, Mat *);
213 PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFunction);
214 PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFunction *);
215 typedef MatSolverType       MatSolverPackage PETSC_DEPRECATED_TYPEDEF(3, 9, 0, "MatSolverType", );
216 PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeRegister()", ) static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFunction f)
217 {
218   return MatSolverTypeRegister(stype, mtype, ftype, f);
219 }
220 PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeGet()", ) static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFunction *f)
221 {
222   return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f);
223 }
224 
225 /*E
226     MatProductType - indicates what type of matrix product is requested
227 
228     Values:
229 +  `MATPRODUCT_AB` - product of two matrices
230 .  `MATPRODUCT_AtB` - product of the transpose of a given matrix with a matrix
231 .  `MATPRODUCT_ABt` - product of a matrix with the transpose of another given matrix
232 .  `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself
233 .  `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix
234 -  `MATPRODUCT_ABC` - the product of three matrices
235 
236     Level: beginner
237 
238 .seealso: [](sec_matmatproduct), [](ch_matrices), `MatProductSetType()`
239 E*/
240 typedef enum {
241   MATPRODUCT_UNSPECIFIED = 0,
242   MATPRODUCT_AB,
243   MATPRODUCT_AtB,
244   MATPRODUCT_ABt,
245   MATPRODUCT_PtAP,
246   MATPRODUCT_RARt,
247   MATPRODUCT_ABC
248 } MatProductType;
249 PETSC_EXTERN const char *const MatProductTypes[];
250 
251 /*J
252     MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation
253 
254    Level: beginner
255 
256 .seealso: [](sec_matmatproduct), [](ch_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType`
257 J*/
258 typedef const char *MatProductAlgorithm;
259 #define MATPRODUCTALGORITHMDEFAULT         "default"
260 #define MATPRODUCTALGORITHMSORTED          "sorted"
261 #define MATPRODUCTALGORITHMSCALABLE        "scalable"
262 #define MATPRODUCTALGORITHMSCALABLEFAST    "scalable_fast"
263 #define MATPRODUCTALGORITHMHEAP            "heap"
264 #define MATPRODUCTALGORITHMBHEAP           "btheap"
265 #define MATPRODUCTALGORITHMLLCONDENSED     "llcondensed"
266 #define MATPRODUCTALGORITHMROWMERGE        "rowmerge"
267 #define MATPRODUCTALGORITHMOUTERPRODUCT    "outerproduct"
268 #define MATPRODUCTALGORITHMATB             "at*b"
269 #define MATPRODUCTALGORITHMRAP             "rap"
270 #define MATPRODUCTALGORITHMNONSCALABLE     "nonscalable"
271 #define MATPRODUCTALGORITHMSEQMPI          "seqmpi"
272 #define MATPRODUCTALGORITHMBACKEND         "backend"
273 #define MATPRODUCTALGORITHMOVERLAPPING     "overlapping"
274 #define MATPRODUCTALGORITHMMERGED          "merged"
275 #define MATPRODUCTALGORITHMALLATONCE       "allatonce"
276 #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged"
277 #define MATPRODUCTALGORITHMALLGATHERV      "allgatherv"
278 #define MATPRODUCTALGORITHMCYCLIC          "cyclic"
279 #if defined(PETSC_HAVE_HYPRE)
280   #define MATPRODUCTALGORITHMHYPRE "hypre"
281 #endif
282 
283 PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *);
284 PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat);
285 PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType);
286 PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm);
287 PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal);
288 PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat);
289 PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat);
290 PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat);
291 PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat);
292 PETSC_EXTERN PetscErrorCode MatProductClear(Mat);
293 PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer);
294 PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *);
295 PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *);
296 
297 /* Logging support */
298 #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */
299 PETSC_EXTERN PetscClassId MAT_CLASSID;
300 PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID;
301 PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID;
302 PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID;
303 PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID;
304 PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID;
305 PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID;
306 PETSC_EXTERN PetscClassId MATMFFD_CLASSID;
307 
308 /*E
309     MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions
310      are to be reused to store the new matrix values.
311 
312    Values:
313 +  `MAT_INITIAL_MATRIX` - create a new matrix
314 .  `MAT_REUSE_MATRIX` - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX`
315 .  `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions)
316 -  `MAT_IGNORE_MATRIX` - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions)
317 
318     Level: beginner
319 
320 .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()`
321 E*/
322 typedef enum {
323   MAT_INITIAL_MATRIX,
324   MAT_REUSE_MATRIX,
325   MAT_IGNORE_MATRIX,
326   MAT_INPLACE_MATRIX
327 } MatReuse;
328 
329 /*E
330     MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()`
331      include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`.
332 
333     Level: developer
334 
335     Values:
336 +  `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values
337 -  `MAT_GET_VALUES` - copy the matrix values
338 
339     Developer Note:
340     Why is not just a boolean used for this information?
341 
342 .seealso: [](ch_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()`
343 E*/
344 typedef enum {
345   MAT_DO_NOT_GET_VALUES,
346   MAT_GET_VALUES
347 } MatCreateSubMatrixOption;
348 
349 PETSC_EXTERN PetscErrorCode MatInitializePackage(void);
350 PETSC_EXTERN PetscErrorCode MatFinalizePackage(void);
351 
352 PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *);
353 PETSC_EXTERN PetscErrorCode MatCreateFromOptions(MPI_Comm, const char *, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
354 PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt);
355 PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType);
356 PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *);
357 PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType);
358 PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat);
359 PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]);
360 PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat));
361 PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]);
362 PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]);
363 PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]);
364 PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]);
365 PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]);
366 PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]);
367 PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool);
368 
369 PETSC_EXTERN PetscFunctionList MatList;
370 PETSC_EXTERN PetscFunctionList MatColoringList;
371 PETSC_EXTERN PetscFunctionList MatPartitioningList;
372 
373 /*E
374     MatStructure - Indicates if two matrices have the same nonzero structure
375 
376    Values:
377 +  `SAME_NONZERO_PATTERN`  - the two matrices have identical nonzero patterns
378 .  `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns
379 .  `SUBSET_NONZERO_PATTERN` - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix
380 -  `UNKNOWN_NONZERO_PATTERN` - there is no known relationship between the nonzero patterns. In this case the implementations
381                                may try to detect a relationship to optimize the operation
382 
383     Level: beginner
384 
385 .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()`
386 E*/
387 typedef enum {
388   DIFFERENT_NONZERO_PATTERN,
389   SUBSET_NONZERO_PATTERN,
390   SAME_NONZERO_PATTERN,
391   UNKNOWN_NONZERO_PATTERN
392 } MatStructure;
393 PETSC_EXTERN const char *const MatStructures[];
394 
395 #if defined                 PETSC_HAVE_MKL_SPARSE
396 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
397 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
398 PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
399 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
400 #endif
401 
402 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
403 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJPERM(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
404 
405 PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
406 PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
407 PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]);
408 PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
409 PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *);
410 PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *);
411 PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *);
412 PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt);
413 PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *);
414 
415 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
416 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
417 
418 PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
419 PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
420 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
421 PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
422 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
423 PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
424 PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]);
425 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *);
426 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *);
427 
428 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
429 PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
430 PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
431 
432 PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]);
433 PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]);
434 PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode);
435 
436 PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *);
437 PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
438 
439 PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
440 PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
441 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
442 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
443 PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]);
444 
445 PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *);
446 PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *);
447 PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *);
448 PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *);
449 PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *);
450 PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *);
451 PETSC_EXTERN PetscErrorCode MatLRCSetMats(Mat, Mat, Mat, Vec, Mat);
452 PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *);
453 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
454 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
455 
456 PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *);
457 PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter);
458 PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *);
459 PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *);
460 PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat);
461 PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat);
462 typedef enum {
463   MAT_COMPOSITE_MERGE_RIGHT,
464   MAT_COMPOSITE_MERGE_LEFT
465 } MatCompositeMergeType;
466 PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType);
467 PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *);
468 typedef enum {
469   MAT_COMPOSITE_ADDITIVE,
470   MAT_COMPOSITE_MULTIPLICATIVE
471 } MatCompositeType;
472 PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType);
473 PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *);
474 PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure);
475 PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *);
476 PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *);
477 PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *);
478 PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *);
479 
480 PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *);
481 PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *);
482 
483 PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *);
484 PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *);
485 PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *);
486 PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *);
487 PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *);
488 PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *);
489 PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *);
490 PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS);
491 PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *);
492 PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *);
493 PETSC_EXTERN PetscErrorCode MatCreateDiagonal(Vec, Mat *);
494 PETSC_EXTERN PetscErrorCode MatDiagonalGetDiagonal(Mat, Vec *);
495 PETSC_EXTERN PetscErrorCode MatDiagonalRestoreDiagonal(Mat, Vec *);
496 PETSC_EXTERN PetscErrorCode MatDiagonalGetInverseDiagonal(Mat, Vec *);
497 PETSC_EXTERN PetscErrorCode MatDiagonalRestoreInverseDiagonal(Mat, Vec *);
498 
499 #if defined(PETSC_HAVE_HYPRE)
500 PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
501 #endif
502 
503 PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]);
504 PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]);
505 
506 PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat);
507 PETSC_EXTERN PetscErrorCode MatSetUp(Mat);
508 PETSC_EXTERN PetscErrorCode MatDestroy(Mat *);
509 PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *);
510 
511 PETSC_EXTERN PetscErrorCode MatConjugate(Mat);
512 PETSC_EXTERN PetscErrorCode MatRealPart(Mat);
513 PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat);
514 PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *);
515 PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *);
516 PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **);
517 PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *);
518 PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat);
519 PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *);
520 PETSC_EXTERN PetscErrorCode MatComputeVariableBlockEnvelope(Mat);
521 
522 PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
523 PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode);
524 PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
525 PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]);
526 PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]);
527 PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]);
528 PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom);
529 
530 /*S
531      MatStencil - Data structure (C struct) for storing information about rows and
532         columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()`
533 
534    Level: beginner
535 
536    Notes:
537    The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored).
538    The c represents the the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored.
539 
540    For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`.
541 
542    For staggered grids, see `DMStagStencil`
543 
544    Fortran Note:
545    See `MatSetValuesStencil()` for details.
546 
547 .seealso: [](ch_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`,
548           `DMStagStencil`
549 S*/
550 typedef struct {
551   PetscInt k, j, i, c;
552 } MatStencil;
553 
554 PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
555 PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
556 PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt);
557 
558 /*E
559     MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use
560 
561     Values:
562 +   `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix
563 -   `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted
564 
565     Level: beginner
566 
567 .seealso: [](ch_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()`
568 E*/
569 typedef enum {
570   MAT_FLUSH_ASSEMBLY = 1,
571   MAT_FINAL_ASSEMBLY = 0
572 } MatAssemblyType;
573 PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType);
574 PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType);
575 PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *);
576 
577 /*E
578     MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage
579 
580     Level: beginner
581 
582    Note:
583    See `MatSetOption()` for the use of the options
584 
585    Developer Note:
586    Entries that are negative need not be called collectively by all processes.
587 
588 .seealso: [](ch_matrices), `Mat`, `MatSetOption()`
589 E*/
590 typedef enum {
591   MAT_OPTION_MIN                  = -3,
592   MAT_UNUSED_NONZERO_LOCATION_ERR = -2,
593   MAT_ROW_ORIENTED                = -1,
594   MAT_SYMMETRIC                   = 1,
595   MAT_STRUCTURALLY_SYMMETRIC      = 2,
596   MAT_FORCE_DIAGONAL_ENTRIES      = 3,
597   MAT_IGNORE_OFF_PROC_ENTRIES     = 4,
598   MAT_USE_HASH_TABLE              = 5,
599   MAT_KEEP_NONZERO_PATTERN        = 6,
600   MAT_IGNORE_ZERO_ENTRIES         = 7,
601   MAT_USE_INODES                  = 8,
602   MAT_HERMITIAN                   = 9,
603   MAT_SYMMETRY_ETERNAL            = 10,
604   MAT_NEW_NONZERO_LOCATION_ERR    = 11,
605   MAT_IGNORE_LOWER_TRIANGULAR     = 12,
606   MAT_ERROR_LOWER_TRIANGULAR      = 13,
607   MAT_GETROW_UPPERTRIANGULAR      = 14,
608   MAT_SPD                         = 15,
609   MAT_NO_OFF_PROC_ZERO_ROWS       = 16,
610   MAT_NO_OFF_PROC_ENTRIES         = 17,
611   MAT_NEW_NONZERO_LOCATIONS       = 18,
612   MAT_NEW_NONZERO_ALLOCATION_ERR  = 19,
613   MAT_SUBSET_OFF_PROC_ENTRIES     = 20,
614   MAT_SUBMAT_SINGLEIS             = 21,
615   MAT_STRUCTURE_ONLY              = 22,
616   MAT_SORTED_FULL                 = 23,
617   MAT_FORM_EXPLICIT_TRANSPOSE     = 24,
618   MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25,
619   MAT_SPD_ETERNAL                 = 26,
620   MAT_OPTION_MAX                  = 27
621 } MatOption;
622 
623 PETSC_EXTERN const char *const *MatOptions;
624 PETSC_EXTERN PetscErrorCode     MatSetOption(Mat, MatOption, PetscBool);
625 PETSC_EXTERN PetscErrorCode     MatGetOption(Mat, MatOption, PetscBool *);
626 PETSC_EXTERN PetscErrorCode     MatPropagateSymmetryOptions(Mat, Mat);
627 PETSC_EXTERN PetscErrorCode     MatGetType(Mat, MatType *);
628 
629 PETSC_EXTERN PetscErrorCode    MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
630 PETSC_EXTERN PetscErrorCode    MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
631 PETSC_EXTERN PetscErrorCode    MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
632 PETSC_EXTERN PetscErrorCode    MatGetRowUpperTriangular(Mat);
633 PETSC_EXTERN PetscErrorCode    MatRestoreRowUpperTriangular(Mat);
634 PETSC_EXTERN PetscErrorCode    MatGetColumnVector(Mat, Vec, PetscInt);
635 PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArray(Mat, PetscScalar *[]);
636 PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]);
637 PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]);
638 PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArray(Mat, PetscScalar *[]);
639 PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]);
640 PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]);
641 PETSC_EXTERN PetscErrorCode    MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *);
642 PETSC_EXTERN PetscErrorCode    MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
643 PETSC_EXTERN PetscErrorCode    MatSeqAIJSetType(Mat, MatType);
644 PETSC_EXTERN PetscErrorCode    MatSeqAIJKron(Mat, Mat, MatReuse, Mat *);
645 PETSC_EXTERN PetscErrorCode    MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *));
646 PETSC_EXTERN PetscFunctionList MatSeqAIJList;
647 PETSC_EXTERN PetscErrorCode    MatSeqBAIJGetArray(Mat, PetscScalar *[]);
648 PETSC_EXTERN PetscErrorCode    MatSeqBAIJRestoreArray(Mat, PetscScalar *[]);
649 PETSC_EXTERN PetscErrorCode    MatSeqSBAIJGetArray(Mat, PetscScalar *[]);
650 PETSC_EXTERN PetscErrorCode    MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]);
651 PETSC_EXTERN PetscErrorCode    MatDenseGetArray(Mat, PetscScalar *[]);
652 PETSC_EXTERN PetscErrorCode    MatDenseRestoreArray(Mat, PetscScalar *[]);
653 PETSC_EXTERN PetscErrorCode    MatDensePlaceArray(Mat, const PetscScalar[]);
654 PETSC_EXTERN PetscErrorCode    MatDenseReplaceArray(Mat, const PetscScalar[]);
655 PETSC_EXTERN PetscErrorCode    MatDenseResetArray(Mat);
656 PETSC_EXTERN PetscErrorCode    MatDenseGetArrayRead(Mat, const PetscScalar *[]);
657 PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayRead(Mat, const PetscScalar *[]);
658 PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWrite(Mat, PetscScalar *[]);
659 PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWrite(Mat, PetscScalar *[]);
660 PETSC_EXTERN PetscErrorCode    MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *);
661 PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]);
662 PETSC_EXTERN PetscErrorCode    MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *);
663 PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]);
664 PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *);
665 PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]);
666 PETSC_EXTERN PetscErrorCode    MatGetBlockSize(Mat, PetscInt *);
667 PETSC_EXTERN PetscErrorCode    MatSetBlockSize(Mat, PetscInt);
668 PETSC_EXTERN PetscErrorCode    MatGetBlockSizes(Mat, PetscInt *, PetscInt *);
669 PETSC_EXTERN PetscErrorCode    MatSetBlockSizes(Mat, PetscInt, PetscInt);
670 PETSC_EXTERN PetscErrorCode    MatSetBlockSizesFromMats(Mat, Mat, Mat);
671 PETSC_EXTERN PetscErrorCode    MatSetVariableBlockSizes(Mat, PetscInt, PetscInt *);
672 PETSC_EXTERN PetscErrorCode    MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt **);
673 
674 PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]);
675 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]);
676 PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *);
677 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *);
678 PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *);
679 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *);
680 PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *);
681 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *);
682 PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
683 PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *);
684 
685 PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec);
686 PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec);
687 PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec);
688 PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec);
689 PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec);
690 PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *);
691 PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *);
692 PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec);
693 PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec);
694 PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat);
695 PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat);
696 PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat);
697 PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec);
698 
699 /*E
700     MatDuplicateOption - Indicates if a duplicated sparse matrix should have
701   its numerical values copied over or just its nonzero structure.
702 
703     Values:
704 +   `MAT_DO_NOT_COPY_VALUES`    - Create a matrix using the same nonzero pattern as the original matrix,
705                                with zeros for the numerical values
706 .   `MAT_COPY_VALUES`           - Create a matrix with the same nonzero pattern as the original matrix
707                                and with the same numerical values.
708 -   `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix
709                                and does not copy it, using zeros for the numerical values. The parent and
710                                child matrices will share their index (i and j) arrays, and you cannot
711                                insert new nonzero entries into either matrix
712 
713     Level: beginner
714 
715   Note:
716   Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in
717   this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified.
718 
719 .seealso: [](ch_matrices), `Mat`, `MatDuplicate()`
720 E*/
721 typedef enum {
722   MAT_DO_NOT_COPY_VALUES,
723   MAT_COPY_VALUES,
724   MAT_SHARE_NONZERO_PATTERN
725 } MatDuplicateOption;
726 
727 PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *);
728 PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *);
729 
730 PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure);
731 PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer);
732 PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *);
733 PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *);
734 PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *);
735 PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *);
736 PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *);
737 PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *);
738 PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *);
739 PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *);
740 PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer);
741 
742 PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
743 PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
744 PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
745 PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
746 
747 /*S
748      MatInfo - Context of matrix information, used with `MatGetInfo()`
749 
750    Level: intermediate
751 
752    Fortran Note:
753    Information is stored as a double-precision array of dimension `MAT_INFO_SIZE`
754 
755 .seealso: [](ch_matrices), `Mat`, `MatGetInfo()`, `MatInfoType`
756 S*/
757 typedef struct {
758   PetscLogDouble block_size;                          /* block size */
759   PetscLogDouble nz_allocated, nz_used, nz_unneeded;  /* number of nonzeros */
760   PetscLogDouble memory;                              /* memory allocated */
761   PetscLogDouble assemblies;                          /* number of matrix assemblies called */
762   PetscLogDouble mallocs;                             /* number of mallocs during MatSetValues() */
763   PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */
764   PetscLogDouble factor_mallocs;                      /* number of mallocs during factorization */
765 } MatInfo;
766 
767 /*E
768     MatInfoType - Indicates if you want information about the local part of the matrix,
769      the entire parallel matrix or the maximum over all the local parts.
770 
771     Values:
772 +   `MAT_LOCAL` - values for each MPI process part of the matrix
773 .   `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes
774 -   `MAT_GLOBAL_SUM` - sum of each value over all MPI processes
775 
776     Level: beginner
777 
778 .seealso: [](ch_matrices), `MatGetInfo()`, `MatInfo`
779 E*/
780 typedef enum {
781   MAT_LOCAL      = 1,
782   MAT_GLOBAL_MAX = 2,
783   MAT_GLOBAL_SUM = 3
784 } MatInfoType;
785 PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *);
786 PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec);
787 PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]);
788 PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]);
789 PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]);
790 PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]);
791 PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec);
792 PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *);
793 PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *);
794 PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat);
795 PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *);
796 PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *);
797 PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec);
798 PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode);
799 
800 PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *);
801 PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *);
802 PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *);
803 PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
804 PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
805 PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
806 PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
807 PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
808 PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
809 PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
810 PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
811 PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
812 PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *);
813 
814 PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *);
815 PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *);
816 PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *);
817 PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *);
818 PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *);
819 PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *);
820 PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *);
821 PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *);
822 PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *);
823 PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat);
824 PETSC_EXTERN PetscErrorCode MatSetInf(Mat);
825 PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
826 PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec);
827 PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
828 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
829 PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
830 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec);
831 
832 PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *);
833 PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *);
834 PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *);
835 PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **);
836 PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *);
837 PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **);
838 PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *);
839 
840 PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
841 PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrices()", ) static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
842 {
843   return MatCreateSubMatrices(mat, n, irow, icol, scall, submat);
844 }
845 PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
846 PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatricesMPI()", ) static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
847 {
848   return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat);
849 }
850 PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]);
851 PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]);
852 PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *);
853 PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrix()", ) static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat)
854 {
855   return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat);
856 }
857 PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *);
858 PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *);
859 PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *);
860 PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *);
861 
862 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *);
863 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *);
864 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat);
865 PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *);
866 PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *);
867 PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
868 PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *);
869 PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *);
870 PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *);
871 PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]);
872 
873 PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt);
874 PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov);
875 PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool);
876 
877 PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
878 
879 PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
880 PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
881 
882 PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *);
883 PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *);
884 
885 PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
886 PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *);
887 
888 PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure);
889 PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure);
890 
891 PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar);
892 PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar);
893 
894 PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping);
895 PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
896 PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *);
897 PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout);
898 PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
899 PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
900 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
901 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
902 PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
903 PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
904 PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
905 
906 PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt);
907 PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *);
908 
909 PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec);
910 PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec);
911 PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec);
912 PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *);
913 PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *);
914 PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *);
915 PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *);
916 PETSC_DEPRECATED_FUNCTION(3, 6, 0, "MatCreateVecs()", ) static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y)
917 {
918   return MatCreateVecs(mat, x, y);
919 }
920 PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *);
921 PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *);
922 PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *);
923 PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *);
924 PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *);
925 
926 /*@C
927    MatSetValue - Set a single entry into a matrix.
928 
929    This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()`
930    MUST be called after all calls to `MatSetValue()` have been completed.
931 
932    Not Collective
933 
934    Input Parameters:
935 +  mat - the matrix
936 .  i - the row location of the entry
937 .  j - the column location of the entry
938 .  va - the value to insert
939 -  mode - either `INSERT_VALUES` or `ADD_VALUES`
940 
941    Level: beginner
942 
943    Note:
944    For efficiency one should use `MatSetValues()` and set several values simultaneously.
945 
946 .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `InsertMode`, `MatGetValue()`, `MatSetValues()`,
947           `MatSetValueLocal()`, `MatSetValuesLocal()`
948 @*/
949 static inline PetscErrorCode MatSetValue(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
950 {
951   return MatSetValues(mat, 1, &i, 1, &j, &va, mode);
952 }
953 
954 /*@C
955    MatGetValue - Gets a single value from a matrix
956 
957    Not Collective; can only return a value owned by the given process
958 
959    Input Parameters:
960 +  mat - the matrix
961 .  row - the row location of the entry
962 -  col - the column location of the entry
963 
964    Output Parameter:
965 .  va - the value
966 
967    Level: advanced
968 
969    Notes:
970    The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd` before this call
971 
972    For efficiency one should use `MatGetValues()` and get several values simultaneously.
973 
974    See notes for `MatGetValues()`.
975 
976 .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()`
977 @*/
978 static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va)
979 {
980   return MatGetValues(mat, 1, &row, 1, &col, va);
981 }
982 
983 /*@C
984    MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes.
985 
986    Not Collective
987 
988    Input Parameters:
989 +  mat - the matrix
990 .  i - the row location of the entry
991 .  j - the column location of the entry
992 .  va - the value to insert
993 -  mode - either `INSERT_VALUES` or `ADD_VALUES`
994 
995    Level: intermediate
996 
997    Notes:
998    For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously.
999 
1000    See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used.
1001 
1002 .seealso: [](ch_matrices), `MatSetValue()`, `MatSetValuesLocal()`
1003 @*/
1004 static inline PetscErrorCode MatSetValueLocal(Mat mat, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
1005 {
1006   return MatSetValuesLocal(mat, 1, &i, 1, &j, &va, mode);
1007 }
1008 
1009 /*MC
1010    MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per
1011        row in a matrix providing the data that one can use to correctly preallocate the matrix.
1012 
1013    Synopsis:
1014    #include <petscmat.h>
1015    PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz)
1016 
1017    Collective
1018 
1019    Input Parameters:
1020 +  comm - the communicator that will share the eventually allocated matrix
1021 .  nrows - the number of LOCAL rows in the matrix
1022 -  ncols - the number of LOCAL columns in the matrix
1023 
1024    Output Parameters:
1025 +  dnz - the array that will be passed to the matrix preallocation routines
1026 -  onz - the other array passed to the matrix preallocation routines
1027 
1028    Level: deprecated (since v3.19)
1029 
1030    Notes:
1031    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
1032    the use of this routine
1033 
1034    This is a macro that handles its own error checking, it does not return an error code.
1035 
1036    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1037 
1038    Developer Note:
1039     This is a MACRO not a function because it has a leading { that is closed by `PetscPreallocateFinalize()`.
1040 
1041 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1042           `MatPreallocateSymmetricSetLocalBlock()`
1043 M*/
1044 #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \
1045   do { \
1046     PetscInt              __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \
1047     PetscInt PETSC_UNUSED __start; \
1048     PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \
1049     PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \
1050     __start = __end - __ncols; \
1051     (void)__start; \
1052     PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \
1053   __rstart -= __nrows
1054 
1055 #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateBegin()", ) MatPreallocateBegin(__VA_ARGS__)
1056 
1057 /*MC
1058    MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1059        inserted using a local number of the rows and columns
1060 
1061    Synopsis:
1062    #include <petscmat.h>
1063    PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1064 
1065    Not Collective
1066 
1067    Input Parameters:
1068 +  map - the row mapping from local numbering to global numbering
1069 .  nrows - the number of rows indicated
1070 .  rows - the indices of the rows
1071 .  cmap - the column mapping from local to global numbering
1072 .  ncols - the number of columns in the matrix
1073 .  cols - the columns indicated
1074 .  dnz - the array that will be passed to the matrix preallocation routines
1075 -  onz - the other array passed to the matrix preallocation routines
1076 
1077    Level: deprecated (since v3.19)
1078 
1079    Notes:
1080    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
1081    the use of this routine
1082 
1083    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1084 
1085 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1086           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()`
1087 M*/
1088 #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
1089   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1090 
1091 /*MC
1092    MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1093        inserted using a local number of the rows and columns. This version removes any duplicate columns in cols
1094 
1095    Synopsis:
1096    #include <petscmat.h>
1097    PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1098 
1099    Not Collective
1100 
1101    Input Parameters:
1102 +  map - the row mapping from local numbering to global numbering
1103 .  nrows - the number of rows indicated
1104 .  rows - the indices of the rows (these values are mapped to the global values)
1105 .  cmap - the column mapping from local to global numbering
1106 .  ncols - the number of columns in the matrix   (this value will be changed if duplicate columns are found)
1107 .  cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed)
1108 .  dnz - the array that will be passed to the matrix preallocation routines
1109 -  onz - the other array passed to the matrix preallocation routines
1110 
1111    Level: deprecated (since v3.19)
1112 
1113    Notes:
1114    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
1115    the use of this routine
1116 
1117    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1118 
1119 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1120           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1121 M*/
1122 #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
1123   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1124 
1125 /*MC
1126    MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1127        inserted using a local number of the rows and columns
1128 
1129    Synopsis:
1130    #include <petscmat.h>
1131    PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1132 
1133    Not Collective
1134 
1135    Input Parameters:
1136 +  map - the row mapping from local numbering to global numbering
1137 .  nrows - the number of rows indicated
1138 .  rows - the indices of the rows
1139 .  cmap - the column mapping from local to global numbering
1140 .  ncols - the number of columns in the matrix
1141 .  cols - the columns indicated
1142 .  dnz - the array that will be passed to the matrix preallocation routines
1143 -  onz - the other array passed to the matrix preallocation routines
1144 
1145    Level: deprecated (since v3.19)
1146 
1147    Notes:
1148    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
1149    the use of this routine
1150 
1151    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1152 
1153 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1154           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`
1155 M*/
1156 #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
1157   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1158 
1159 /*MC
1160    MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1161        inserted using a local number of the rows and columns
1162 
1163    Synopsis:
1164    #include <petscmat.h>
1165    PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1166 
1167    Not Collective
1168 
1169    Input Parameters:
1170 +  map - the mapping between local numbering and global numbering
1171 .  nrows - the number of rows indicated
1172 .  rows - the indices of the rows
1173 .  ncols - the number of columns in the matrix
1174 .  cols - the columns indicated
1175 .  dnz - the array that will be passed to the matrix preallocation routines
1176 -  onz - the other array passed to the matrix preallocation routines
1177 
1178    Level: deprecated (since v3.19)
1179 
1180    Notes:
1181    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
1182    the use of this routine
1183 
1184    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1185 
1186 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`
1187           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1188 M*/
1189 #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \
1190   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));)
1191 
1192 /*MC
1193    MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1194        inserted using a local number of the rows and columns
1195 
1196    Synopsis:
1197    #include <petscmat.h>
1198    PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1199 
1200    Not Collective
1201 
1202    Input Parameters:
1203 +  row - the row
1204 .  ncols - the number of columns in the matrix
1205 -  cols - the columns indicated
1206 
1207    Output Parameters:
1208 +  dnz - the array that will be passed to the matrix preallocation routines
1209 -  onz - the other array passed to the matrix preallocation routines
1210 
1211    Level: deprecated (since v3.19)
1212 
1213    Notes:
1214    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
1215    the use of this routine
1216 
1217    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1218 
1219    This is a MACRO not a function because it uses variables declared in MatPreallocateBegin().
1220 
1221 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1222           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1223 M*/
1224 #define MatPreallocateSet(row, nc, cols, dnz, onz) \
1225   PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \
1226     if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \
1227     else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
1228   })
1229 
1230 /*MC
1231    MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1232        inserted using a local number of the rows and columns
1233 
1234    Synopsis:
1235    #include <petscmat.h>
1236    PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1237 
1238    Not Collective
1239 
1240    Input Parameters:
1241 +  nrows - the number of rows indicated
1242 .  rows - the indices of the rows
1243 .  ncols - the number of columns in the matrix
1244 .  cols - the columns indicated
1245 .  dnz - the array that will be passed to the matrix preallocation routines
1246 -  onz - the other array passed to the matrix preallocation routines
1247 
1248    Level: deprecated (since v3.19)
1249 
1250    Notes:
1251    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
1252    the use of this routine
1253 
1254    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1255 
1256    This is a MACRO not a function because it uses variables declared in MatPreallocateBegin().
1257 
1258 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`,
1259           `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1260 M*/
1261 #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \
1262   PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \
1263     if (cols[__i] >= __end) onz[row - __rstart]++; \
1264     else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
1265   })
1266 
1267 /*MC
1268    MatPreallocateLocation -  An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists
1269 
1270    Synopsis:
1271    #include <petscmat.h>
1272    PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz)
1273 
1274    Not Collective
1275 
1276    Input Parameters:
1277 +  A - matrix
1278 .  row - row where values exist (must be local to this process)
1279 .  ncols - number of columns
1280 .  cols - columns with nonzeros
1281 .  dnz - the array that will be passed to the matrix preallocation routines
1282 -  onz - the other array passed to the matrix preallocation routines
1283 
1284    Level: deprecated (since v3.19)
1285 
1286    Notes:
1287    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
1288    the use of this routine
1289 
1290    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1291 
1292   This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines.
1293 
1294 .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1295           `MatPreallocateSymmetricSetLocalBlock()`
1296 M*/
1297 #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz))
1298 
1299 /*MC
1300    MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per
1301        row in a matrix providing the data that one can use to correctly preallocate the matrix.
1302 
1303    Synopsis:
1304    #include <petscmat.h>
1305    PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz)
1306 
1307    Collective
1308 
1309    Input Parameters:
1310 +  dnz - the array that was be passed to the matrix preallocation routines
1311 -  onz - the other array passed to the matrix preallocation routines
1312 
1313    Level: deprecated (since v3.19)
1314 
1315    Notes:
1316    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
1317    the use of this routine
1318 
1319    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1320 
1321    Developer Note:
1322     This is a MACRO not a function because it closes the { started in MatPreallocateBegin().
1323 
1324 .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1325           `MatPreallocateSymmetricSetLocalBlock()`
1326 M*/
1327 #define MatPreallocateEnd(dnz, onz) \
1328   PetscCall(PetscFree2(dnz, onz)); \
1329   } \
1330   while (0)
1331 
1332 #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateEnd()", ) MatPreallocateEnd(__VA_ARGS__)
1333 
1334 /* Routines unique to particular data structures */
1335 PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *);
1336 
1337 PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *);
1338 PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *);
1339 
1340 PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]);
1341 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]);
1342 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1343 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1344 PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1345 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool);
1346 
1347 #define MAT_SKIP_ALLOCATION -4
1348 
1349 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1350 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1351 PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]);
1352 PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt);
1353 
1354 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1355 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1356 PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1357 PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1358 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1359 PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1360 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1361 PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]);
1362 PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *);
1363 PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *);
1364 PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]);
1365 PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]);
1366 PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
1367 PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
1368 PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *);
1369 
1370 PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *);
1371 PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt);
1372 PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatDenseSetLDA()", ) static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda)
1373 {
1374   return MatDenseSetLDA(A, lda);
1375 }
1376 PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *);
1377 
1378 PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1379 
1380 PETSC_EXTERN PetscErrorCode MatStoreValues(Mat);
1381 PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat);
1382 
1383 PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *);
1384 PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *);
1385 /*
1386   These routines are not usually accessed directly, rather solving is
1387   done through the KSP and PC interfaces.
1388 */
1389 
1390 /*J
1391     MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used
1392     to reduce fill in sparse factorizations.
1393 
1394    Level: beginner
1395 
1396    Notes:
1397    If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one
1398    of its own.
1399 
1400    There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()`
1401 
1402    Developer Note:
1403    This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning`
1404 
1405 .seealso: [](ch_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`,
1406           `PCFactorSetOrderingType()`
1407 J*/
1408 typedef const char *MatOrderingType;
1409 #define MATORDERINGNATURAL       "natural"
1410 #define MATORDERINGND            "nd"
1411 #define MATORDERING1WD           "1wd"
1412 #define MATORDERINGRCM           "rcm"
1413 #define MATORDERINGQMD           "qmd"
1414 #define MATORDERINGROWLENGTH     "rowlength"
1415 #define MATORDERINGWBM           "wbm"
1416 #define MATORDERINGSPECTRAL      "spectral"
1417 #define MATORDERINGAMD           "amd"           /* only works if UMFPACK is installed with PETSc */
1418 #define MATORDERINGMETISND       "metisnd"       /* only works if METIS is installed with PETSc */
1419 #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */
1420 #define MATORDERINGEXTERNAL      "external"      /* uses an ordering type internal to the factorization package */
1421 
1422 PETSC_EXTERN PetscErrorCode    MatGetOrdering(Mat, MatOrderingType, IS *, IS *);
1423 PETSC_EXTERN PetscErrorCode    MatGetOrderingList(PetscFunctionList *);
1424 PETSC_EXTERN PetscErrorCode    MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *));
1425 PETSC_EXTERN PetscFunctionList MatOrderingList;
1426 
1427 #include "petscmatcoarsen.h"
1428 
1429 PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS);
1430 PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *);
1431 
1432 PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *);
1433 
1434 /*S
1435     MatFactorShiftType - Type of numeric shift used for factorizations
1436 
1437    Values:
1438 +  `MAT_SHIFT_NONE` - do not shift the matrix diagonal entries
1439 .  `MAT_SHIFT_NONZERO` - shift the entries to be non-zero
1440 .  `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite
1441 -  `MAT_SHIFT_INBLOCKS` - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ`
1442 
1443    Level: intermediate
1444 
1445 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()`
1446 S*/
1447 typedef enum {
1448   MAT_SHIFT_NONE,
1449   MAT_SHIFT_NONZERO,
1450   MAT_SHIFT_POSITIVE_DEFINITE,
1451   MAT_SHIFT_INBLOCKS
1452 } MatFactorShiftType;
1453 PETSC_EXTERN const char *const MatFactorShiftTypes[];
1454 PETSC_EXTERN const char *const MatFactorShiftTypesDetail[];
1455 
1456 /*S
1457     MatFactorError - indicates what type of error was generated in a matrix factorization
1458 
1459     Values:
1460 +   `MAT_FACTOR_NOERROR` - there was no error during the factorization
1461 .   `MAT_FACTOR_STRUCT_ZEROPIVOT` - there was a missing entry in a diagonal location of the matrix
1462 .   `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization
1463 .   `MAT_FACTOR_OUTMEMORY` - the factorization has run out of memory
1464 -   `MAT_FACTOR_OTHER` - some other error has occurred.
1465 
1466     Level: intermediate
1467 
1468     Note:
1469     When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason`
1470 
1471 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`,
1472           `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason`
1473 S*/
1474 typedef enum {
1475   MAT_FACTOR_NOERROR,
1476   MAT_FACTOR_STRUCT_ZEROPIVOT,
1477   MAT_FACTOR_NUMERIC_ZEROPIVOT,
1478   MAT_FACTOR_OUTMEMORY,
1479   MAT_FACTOR_OTHER
1480 } MatFactorError;
1481 
1482 PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *);
1483 PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat);
1484 PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *);
1485 
1486 /*S
1487    MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization
1488 
1489    Level: developer
1490 
1491    Note:
1492    You can use `MatFactorInfoInitialize()` to set default values.
1493 
1494    Fortran Note:
1495    The data is available in a double precision arrays of size `MAT_FACTORINFO_SIZE`
1496 
1497 .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`,
1498           `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()`
1499 S*/
1500 typedef struct {
1501   PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */
1502   PetscReal usedt;
1503   PetscReal dt;            /* drop tolerance */
1504   PetscReal dtcol;         /* tolerance for pivoting */
1505   PetscReal dtcount;       /* maximum nonzeros to be allowed per row */
1506   PetscReal fill;          /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */
1507   PetscReal levels;        /* ICC/ILU(levels) */
1508   PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0
1509                                    factorization may be faster if do not pivot */
1510   PetscReal zeropivot;     /* pivot is called zero if less than this */
1511   PetscReal shifttype;     /* type of shift added to matrix factor to prevent zero pivots */
1512   PetscReal shiftamount;   /* how large the shift is */
1513 } MatFactorInfo;
1514 
1515 PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *);
1516 PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *);
1517 PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
1518 PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *);
1519 PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *);
1520 PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *);
1521 PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
1522 PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
1523 PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
1524 PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *);
1525 PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *);
1526 PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *);
1527 PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
1528 PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *);
1529 PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *);
1530 PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec);
1531 PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec);
1532 PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec);
1533 PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec);
1534 PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec);
1535 PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec);
1536 PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs);
1537 PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat);
1538 
1539 typedef enum {
1540   MAT_FACTOR_SCHUR_UNFACTORED,
1541   MAT_FACTOR_SCHUR_FACTORED,
1542   MAT_FACTOR_SCHUR_INVERTED
1543 } MatFactorSchurStatus;
1544 PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS);
1545 PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
1546 PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus);
1547 PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat);
1548 PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
1549 PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec);
1550 PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec);
1551 PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat);
1552 
1553 PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat);
1554 /*E
1555     MatSORType - What type of (S)SOR to perform
1556 
1557    Values:
1558 +  `SOR_FORWARD_SWEEP` - do a sweep from the first row of the matrix to the last
1559 .  `SOR_BACKWARD_SWEEP` -  do a sweep from the last row to the first
1560 .  `SOR_SYMMETRIC_SWEEP` - do a sweep from the first row to the last and then back to the first
1561 .  `SOR_LOCAL_FORWARD_SWEEP` - each MPI rank does its own forward sweep with no communication
1562 .  `SOR_LOCAL_BACKWARD_SWEEP` - each MPI rank does its own backward sweep with no communication
1563 .  `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI rank does its own symmetric sweep with no communication
1564 .  `SOR_ZERO_INITIAL_GUESS` - indicates the initial solution is zero so the sweep can avoid unneeded computation
1565 .  `SOR_EISENSTAT` - apply the Eisentat application of SOR, see `PCEISENSTAT`
1566 .  `SOR_APPLY_UPPER` - multiply by the upper triangular portion of the matrix
1567 -  `SOR_APPLY_LOWER` - multiply by the lower triangular portion of the matrix
1568 
1569     Level: beginner
1570 
1571    Note:
1572    These may be bitwise ORd together
1573 
1574    Developer Note:
1575    Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below
1576 
1577 .seealso: [](ch_matrices), `MatSOR()`
1578 E*/
1579 typedef enum {
1580   SOR_FORWARD_SWEEP         = 1,
1581   SOR_BACKWARD_SWEEP        = 2,
1582   SOR_SYMMETRIC_SWEEP       = 3,
1583   SOR_LOCAL_FORWARD_SWEEP   = 4,
1584   SOR_LOCAL_BACKWARD_SWEEP  = 8,
1585   SOR_LOCAL_SYMMETRIC_SWEEP = 12,
1586   SOR_ZERO_INITIAL_GUESS    = 16,
1587   SOR_EISENSTAT             = 32,
1588   SOR_APPLY_UPPER           = 64,
1589   SOR_APPLY_LOWER           = 128
1590 } MatSORType;
1591 PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
1592 
1593 /*S
1594      MatColoring - Object for managing the coloring of matrices.
1595 
1596    Level: beginner
1597 
1598    Notes:
1599    Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
1600    matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors).
1601 
1602    Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This
1603    same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices.
1604 
1605 .seealso: [](ch_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`,
1606           `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`,
1607           `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen`
1608 S*/
1609 typedef struct _p_MatColoring *MatColoring;
1610 
1611 /*J
1612     MatColoringType - String with the name of a PETSc matrix coloring
1613 
1614    Level: beginner
1615 
1616 .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring`
1617 J*/
1618 typedef const char *MatColoringType;
1619 #define MATCOLORINGJP      "jp"
1620 #define MATCOLORINGPOWER   "power"
1621 #define MATCOLORINGNATURAL "natural"
1622 #define MATCOLORINGSL      "sl"
1623 #define MATCOLORINGLF      "lf"
1624 #define MATCOLORINGID      "id"
1625 #define MATCOLORINGGREEDY  "greedy"
1626 
1627 /*E
1628    MatColoringWeightType - Type of weight scheme used for the coloring algorithm
1629 
1630     Values:
1631 +   `MAT_COLORING_RANDOM`  - Random weights
1632 .   `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering.
1633 -   `MAT_COLORING_LF`      - Last-first weighting.
1634 
1635     Level: intermediate
1636 
1637 .seealso: [](ch_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()`
1638 E*/
1639 typedef enum {
1640   MAT_COLORING_WEIGHT_RANDOM,
1641   MAT_COLORING_WEIGHT_LEXICAL,
1642   MAT_COLORING_WEIGHT_LF,
1643   MAT_COLORING_WEIGHT_SL
1644 } MatColoringWeightType;
1645 
1646 PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *);
1647 PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *);
1648 PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *);
1649 PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer);
1650 PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType);
1651 PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring);
1652 PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt);
1653 PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *);
1654 PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt);
1655 PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *);
1656 PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *);
1657 PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring));
1658 PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *);
1659 PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType);
1660 PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *);
1661 PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm);
1662 PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring);
1663 PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatColoringTest()", ) static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring)
1664 {
1665   return MatColoringTest(matcoloring, iscoloring);
1666 }
1667 PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring);
1668 
1669 /*S
1670      MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring
1671 
1672    Level: beginner
1673 
1674    Notes:
1675    This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()`
1676 
1677    The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object
1678 
1679 .seealso: [](ch_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()`
1680 S*/
1681 typedef struct _p_MatFDColoring *MatFDColoring;
1682 
1683 PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *);
1684 PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *);
1685 PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer);
1686 PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *);
1687 PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **);
1688 PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal);
1689 PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring);
1690 PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *);
1691 PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec);
1692 PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]);
1693 PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring);
1694 PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt);
1695 PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *);
1696 
1697 /*S
1698      MatTransposeColoring - Object for computing a sparse matrix product C=A*B^T via coloring
1699 
1700    Level: developer
1701 
1702 .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()`
1703 S*/
1704 typedef struct _p_MatTransposeColoring *MatTransposeColoring;
1705 
1706 PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *);
1707 PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat);
1708 PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat);
1709 PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *);
1710 
1711 /*S
1712      MatPartitioning - Object for managing the partitioning of a matrix or graph
1713 
1714    Level: beginner
1715 
1716    Note:
1717      There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations
1718      via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`)
1719 
1720    Developers Note:
1721      It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed
1722 
1723 .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`,
1724           `MatCoarsenType`, `MatCoarsenType`
1725 S*/
1726 typedef struct _p_MatPartitioning *MatPartitioning;
1727 
1728 /*J
1729     MatPartitioningType - String with the name of a PETSc matrix partitioning
1730 
1731    Level: beginner
1732 dm
1733 .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`,
1734           `MatCoarsenType`, `MatCoarsenType`
1735 J*/
1736 typedef const char *MatPartitioningType;
1737 #define MATPARTITIONINGCURRENT  "current"
1738 #define MATPARTITIONINGAVERAGE  "average"
1739 #define MATPARTITIONINGSQUARE   "square"
1740 #define MATPARTITIONINGPARMETIS "parmetis"
1741 #define MATPARTITIONINGCHACO    "chaco"
1742 #define MATPARTITIONINGPARTY    "party"
1743 #define MATPARTITIONINGPTSCOTCH "ptscotch"
1744 #define MATPARTITIONINGHIERARCH "hierarch"
1745 
1746 PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *);
1747 PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType);
1748 PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt);
1749 PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat);
1750 PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt);
1751 PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]);
1752 PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]);
1753 PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool);
1754 PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *);
1755 PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *);
1756 PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *);
1757 PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS);
1758 PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *);
1759 PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *);
1760 PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning));
1761 PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer);
1762 PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]);
1763 PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning);
1764 PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *);
1765 
1766 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part);
1767 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning);
1768 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *);
1769 
1770 typedef enum {
1771   MP_CHACO_MULTILEVEL = 1,
1772   MP_CHACO_SPECTRAL   = 2,
1773   MP_CHACO_LINEAR     = 4,
1774   MP_CHACO_RANDOM     = 5,
1775   MP_CHACO_SCATTERED  = 6
1776 } MPChacoGlobalType;
1777 PETSC_EXTERN const char *const MPChacoGlobalTypes[];
1778 typedef enum {
1779   MP_CHACO_KERNIGHAN = 1,
1780   MP_CHACO_NONE      = 2
1781 } MPChacoLocalType;
1782 PETSC_EXTERN const char *const MPChacoLocalTypes[];
1783 typedef enum {
1784   MP_CHACO_LANCZOS = 0,
1785   MP_CHACO_RQI     = 1
1786 } MPChacoEigenType;
1787 PETSC_EXTERN const char *const MPChacoEigenTypes[];
1788 
1789 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType);
1790 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *);
1791 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType);
1792 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *);
1793 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal);
1794 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType);
1795 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *);
1796 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal);
1797 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *);
1798 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt);
1799 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *);
1800 
1801 #define MP_PARTY_OPT "opt"
1802 #define MP_PARTY_LIN "lin"
1803 #define MP_PARTY_SCA "sca"
1804 #define MP_PARTY_RAN "ran"
1805 #define MP_PARTY_GBF "gbf"
1806 #define MP_PARTY_GCF "gcf"
1807 #define MP_PARTY_BUB "bub"
1808 #define MP_PARTY_DEF "def"
1809 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *);
1810 #define MP_PARTY_HELPFUL_SETS  "hs"
1811 #define MP_PARTY_KERNIGHAN_LIN "kl"
1812 #define MP_PARTY_NONE          "no"
1813 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *);
1814 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal);
1815 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool);
1816 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool);
1817 
1818 typedef enum {
1819   MP_PTSCOTCH_DEFAULT,
1820   MP_PTSCOTCH_QUALITY,
1821   MP_PTSCOTCH_SPEED,
1822   MP_PTSCOTCH_BALANCE,
1823   MP_PTSCOTCH_SAFETY,
1824   MP_PTSCOTCH_SCALABILITY
1825 } MPPTScotchStrategyType;
1826 PETSC_EXTERN const char *const MPPTScotchStrategyTypes[];
1827 
1828 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal);
1829 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *);
1830 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType);
1831 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *);
1832 
1833 /*
1834  * hierarchical partitioning
1835  */
1836 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *);
1837 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *);
1838 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt);
1839 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt);
1840 
1841 PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *);
1842 
1843 /*
1844     If you add entries here you must also add them to src/mat/f90-mod/petscmat.h
1845     If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx
1846 */
1847 typedef enum {
1848   MATOP_SET_VALUES               = 0,
1849   MATOP_GET_ROW                  = 1,
1850   MATOP_RESTORE_ROW              = 2,
1851   MATOP_MULT                     = 3,
1852   MATOP_MULT_ADD                 = 4,
1853   MATOP_MULT_TRANSPOSE           = 5,
1854   MATOP_MULT_TRANSPOSE_ADD       = 6,
1855   MATOP_SOLVE                    = 7,
1856   MATOP_SOLVE_ADD                = 8,
1857   MATOP_SOLVE_TRANSPOSE          = 9,
1858   MATOP_SOLVE_TRANSPOSE_ADD      = 10,
1859   MATOP_LUFACTOR                 = 11,
1860   MATOP_CHOLESKYFACTOR           = 12,
1861   MATOP_SOR                      = 13,
1862   MATOP_TRANSPOSE                = 14,
1863   MATOP_GETINFO                  = 15,
1864   MATOP_EQUAL                    = 16,
1865   MATOP_GET_DIAGONAL             = 17,
1866   MATOP_DIAGONAL_SCALE           = 18,
1867   MATOP_NORM                     = 19,
1868   MATOP_ASSEMBLY_BEGIN           = 20,
1869   MATOP_ASSEMBLY_END             = 21,
1870   MATOP_SET_OPTION               = 22,
1871   MATOP_ZERO_ENTRIES             = 23,
1872   MATOP_ZERO_ROWS                = 24,
1873   MATOP_LUFACTOR_SYMBOLIC        = 25,
1874   MATOP_LUFACTOR_NUMERIC         = 26,
1875   MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27,
1876   MATOP_CHOLESKY_FACTOR_NUMERIC  = 28,
1877   MATOP_SETUP                    = 29,
1878   MATOP_ILUFACTOR_SYMBOLIC       = 30,
1879   MATOP_ICCFACTOR_SYMBOLIC       = 31,
1880   MATOP_GET_DIAGONAL_BLOCK       = 32,
1881   MATOP_SET_INF                  = 33,
1882   MATOP_DUPLICATE                = 34,
1883   MATOP_FORWARD_SOLVE            = 35,
1884   MATOP_BACKWARD_SOLVE           = 36,
1885   MATOP_ILUFACTOR                = 37,
1886   MATOP_ICCFACTOR                = 38,
1887   MATOP_AXPY                     = 39,
1888   MATOP_CREATE_SUBMATRICES       = 40,
1889   MATOP_INCREASE_OVERLAP         = 41,
1890   MATOP_GET_VALUES               = 42,
1891   MATOP_COPY                     = 43,
1892   MATOP_GET_ROW_MAX              = 44,
1893   MATOP_SCALE                    = 45,
1894   MATOP_SHIFT                    = 46,
1895   MATOP_DIAGONAL_SET             = 47,
1896   MATOP_ZERO_ROWS_COLUMNS        = 48,
1897   MATOP_SET_RANDOM               = 49,
1898   MATOP_GET_ROW_IJ               = 50,
1899   MATOP_RESTORE_ROW_IJ           = 51,
1900   MATOP_GET_COLUMN_IJ            = 52,
1901   MATOP_RESTORE_COLUMN_IJ        = 53,
1902   MATOP_FDCOLORING_CREATE        = 54,
1903   MATOP_COLORING_PATCH           = 55,
1904   MATOP_SET_UNFACTORED           = 56,
1905   MATOP_PERMUTE                  = 57,
1906   MATOP_SET_VALUES_BLOCKED       = 58,
1907   MATOP_CREATE_SUBMATRIX         = 59,
1908   MATOP_DESTROY                  = 60,
1909   MATOP_VIEW                     = 61,
1910   MATOP_CONVERT_FROM             = 62,
1911   /* MATOP_PLACEHOLDER_63=63 */
1912   MATOP_MATMAT_MULT_SYMBOLIC    = 64,
1913   MATOP_MATMAT_MULT_NUMERIC     = 65,
1914   MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66,
1915   MATOP_SET_VALUES_LOCAL        = 67,
1916   MATOP_ZERO_ROWS_LOCAL         = 68,
1917   MATOP_GET_ROW_MAX_ABS         = 69,
1918   MATOP_GET_ROW_MIN_ABS         = 70,
1919   MATOP_CONVERT                 = 71,
1920   MATOP_HAS_OPERATION           = 72,
1921   /* MATOP_PLACEHOLDER_73=73, */
1922   MATOP_SET_VALUES_ADIFOR = 74,
1923   MATOP_FD_COLORING_APPLY = 75,
1924   MATOP_SET_FROM_OPTIONS  = 76,
1925   /* MATOP_PLACEHOLDER_77=77, */
1926   /* MATOP_PLACEHOLDER_78=78, */
1927   MATOP_FIND_ZERO_DIAGONALS       = 79,
1928   MATOP_MULT_MULTIPLE             = 80,
1929   MATOP_SOLVE_MULTIPLE            = 81,
1930   MATOP_GET_INERTIA               = 82,
1931   MATOP_LOAD                      = 83,
1932   MATOP_IS_SYMMETRIC              = 84,
1933   MATOP_IS_HERMITIAN              = 85,
1934   MATOP_IS_STRUCTURALLY_SYMMETRIC = 86,
1935   MATOP_SET_VALUES_BLOCKEDLOCAL   = 87,
1936   MATOP_CREATE_VECS               = 88,
1937   /* MATOP_PLACEHOLDER_89=89, */
1938   MATOP_MAT_MULT_SYMBOLIC = 90,
1939   MATOP_MAT_MULT_NUMERIC  = 91,
1940   /* MATOP_PLACEHOLDER_92=92, */
1941   MATOP_PTAP_SYMBOLIC = 93,
1942   MATOP_PTAP_NUMERIC  = 94,
1943   /* MATOP_PLACEHOLDER_95=95, */
1944   MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96,
1945   MATOP_MAT_TRANSPOSE_MULT_NUMER = 97,
1946   MATOP_BIND_TO_CPU              = 98,
1947   MATOP_PRODUCTSETFROMOPTIONS    = 99,
1948   MATOP_PRODUCTSYMBOLIC          = 100,
1949   MATOP_PRODUCTNUMERIC           = 101,
1950   MATOP_CONJUGATE                = 102,
1951   MATOP_VIEW_NATIVE              = 103,
1952   MATOP_SET_VALUES_ROW           = 104,
1953   MATOP_REAL_PART                = 105,
1954   MATOP_IMAGINARY_PART           = 106,
1955   MATOP_GET_ROW_UPPER_TRIANGULAR = 107,
1956   MATOP_RESTORE_ROW_UPPER_TRIANG = 108,
1957   MATOP_MAT_SOLVE                = 109,
1958   MATOP_MAT_SOLVE_TRANSPOSE      = 110,
1959   MATOP_GET_ROW_MIN              = 111,
1960   MATOP_GET_COLUMN_VECTOR        = 112,
1961   MATOP_MISSING_DIAGONAL         = 113,
1962   MATOP_GET_SEQ_NONZERO_STRUCTUR = 114,
1963   MATOP_CREATE                   = 115,
1964   MATOP_GET_GHOSTS               = 116,
1965   MATOP_GET_LOCAL_SUB_MATRIX     = 117,
1966   MATOP_RESTORE_LOCALSUB_MATRIX  = 118,
1967   MATOP_MULT_DIAGONAL_BLOCK      = 119,
1968   MATOP_HERMITIAN_TRANSPOSE      = 120,
1969   MATOP_MULT_HERMITIAN_TRANSPOSE = 121,
1970   MATOP_MULT_HERMITIAN_TRANS_ADD = 122,
1971   MATOP_GET_MULTI_PROC_BLOCK     = 123,
1972   MATOP_FIND_NONZERO_ROWS        = 124,
1973   MATOP_GET_COLUMN_NORMS         = 125,
1974   MATOP_INVERT_BLOCK_DIAGONAL    = 126,
1975   MATOP_INVERT_VBLOCK_DIAGONAL   = 127,
1976   MATOP_CREATE_SUB_MATRICES_MPI  = 128,
1977   MATOP_SET_VALUES_BATCH         = 129,
1978   /* MATOP_PLACEHOLDER_130=130, */
1979   MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131,
1980   MATOP_TRANSPOSE_MAT_MULT_NUMER = 132,
1981   MATOP_TRANSPOSE_COLORING_CREAT = 133,
1982   MATOP_TRANS_COLORING_APPLY_SPT = 134,
1983   MATOP_TRANS_COLORING_APPLY_DEN = 135,
1984   /* MATOP_PLACEHOLDER_136=136, */
1985   MATOP_RART_SYMBOLIC         = 137,
1986   MATOP_RART_NUMERIC          = 138,
1987   MATOP_SET_BLOCK_SIZES       = 139,
1988   MATOP_AYPX                  = 140,
1989   MATOP_RESIDUAL              = 141,
1990   MATOP_FDCOLORING_SETUP      = 142,
1991   MATOP_FIND_OFFBLOCK_ENTRIES = 143,
1992   MATOP_MPICONCATENATESEQ     = 144,
1993   MATOP_DESTROYSUBMATRICES    = 145,
1994   MATOP_TRANSPOSE_SOLVE       = 146,
1995   MATOP_GET_VALUES_LOCAL      = 147
1996 } MatOperation;
1997 PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void));
1998 PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void));
1999 PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *);
2000 PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *);
2001 PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatProductClear()", ) static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A)
2002 {
2003   return MatProductClear(A);
2004 }
2005 PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void));
2006 PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void));
2007 PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *);
2008 PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *));
2009 PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType);
2010 PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
2011 PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
2012 PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat);
2013 PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType);
2014 PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *);
2015 
2016 /*
2017    Codes for matrices stored on disk. By default they are
2018    stored in a universal format. By changing the format with
2019    PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will
2020    be stored in a way natural for the matrix, for example dense matrices
2021    would be stored as dense. Matrices stored this way may only be
2022    read into matrices of the same type.
2023 */
2024 #define MATRIX_BINARY_FORMAT_DENSE -1
2025 
2026 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal);
2027 
2028 PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType);
2029 PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
2030 PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool);
2031 PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool);
2032 PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *);
2033 PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *);
2034 PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat);
2035 PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
2036 PETSC_EXTERN PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatConvert()", ) PetscErrorCode MatISGetMPIXAIJ(Mat, MatReuse, Mat *);
2037 
2038 /*S
2039      MatNullSpace - Object that removes a null space from a vector, i.e.
2040          orthogonalizes the vector to a subspace
2041 
2042    Level: advanced
2043 
2044 .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()`
2045 S*/
2046 typedef struct _p_MatNullSpace *MatNullSpace;
2047 
2048 PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *);
2049 PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *);
2050 PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *);
2051 PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec);
2052 PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *);
2053 PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *);
2054 PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace);
2055 PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace);
2056 PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace);
2057 PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *);
2058 PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *);
2059 PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer);
2060 PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **);
2061 PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *);
2062 
2063 PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS);
2064 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal);
2065 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *);
2066 
2067 PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *);
2068 PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *);
2069 PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *);
2070 
2071 PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *);
2072 PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *);
2073 
2074 PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperator()", ) static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B)
2075 {
2076   return MatComputeOperator(A, PETSC_NULLPTR, B);
2077 }
2078 PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperatorTranspose()", ) static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B)
2079 {
2080   return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B);
2081 }
2082 
2083 PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *);
2084 PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *);
2085 PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **);
2086 PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2087 PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **);
2088 PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **);
2089 PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **);
2090 PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2091 PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **);
2092 PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **);
2093 PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat);
2094 PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]);
2095 PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]);
2096 PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *);
2097 
2098 PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec);
2099 
2100 PETSC_EXTERN PetscErrorCode MatMFFDInitializePackage(void);
2101 PETSC_EXTERN PetscErrorCode MatMFFDFinalizePackage(void);
2102 
2103 PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2104 PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec);
2105 PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *);
2106 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *));
2107 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec));
2108 PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt);
2109 PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat);
2110 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal);
2111 PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt);
2112 PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *);
2113 PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]);
2114 PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *);
2115 PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *);
2116 
2117 /*S
2118     MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free
2119               Jacobian vector products
2120 
2121     Level: developer
2122 
2123     Notes:
2124     `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure
2125 
2126      MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure
2127 
2128     This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator`
2129 
2130 .seealso: [](ch_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`,
2131           `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator`
2132 S*/
2133 typedef struct _p_MatMFFD *MatMFFD;
2134 
2135 /*J
2136     MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function
2137 
2138    Values:
2139 +   `MATMFFD_DS` - an algorithm described by Dennis and Schnabel
2140 -   `MATMFFD_WP` - the Walker-Pernice strategy.
2141 
2142    Level: beginner
2143 
2144 .seealso: [](ch_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()`
2145 J*/
2146 typedef const char *MatMFFDType;
2147 #define MATMFFD_DS "ds"
2148 #define MATMFFD_WP "wp"
2149 
2150 PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType);
2151 PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD));
2152 
2153 PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal);
2154 PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool);
2155 
2156 PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType);
2157 
2158 PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *);
2159 PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *);
2160 
2161 #ifdef PETSC_HAVE_H2OPUS
2162 PETSC_EXTERN_TYPEDEF typedef PetscScalar (*MatH2OpusKernel)(PetscInt, PetscReal[], PetscReal[], void *);
2163 PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernel, void *, PetscReal, PetscInt, PetscInt, Mat *);
2164 PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *);
2165 PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal);
2166 PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat);
2167 PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal);
2168 PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool);
2169 PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *);
2170 PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *);
2171 PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *);
2172 PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar);
2173 #endif
2174 
2175 #ifdef PETSC_HAVE_HTOOL
2176 PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatHtoolKernel)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *);
2177 PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernel, void *, Mat *);
2178 PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernel, void *);
2179 PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *);
2180 PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *);
2181 PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool);
2182 
2183 /*E
2184      MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL`
2185 
2186     Values:
2187 +   `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation
2188 .   `MAT_HTOOL_COMPRESSOR_FULL_ACA` - full adaptive cross approximation
2189 -   `MAT_HTOOL_COMPRESSOR_SVD` - singular value decomposition
2190 
2191    Level: intermediate
2192 
2193 .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType`
2194 E*/
2195 typedef enum {
2196   MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA,
2197   MAT_HTOOL_COMPRESSOR_FULL_ACA,
2198   MAT_HTOOL_COMPRESSOR_SVD
2199 } MatHtoolCompressorType;
2200 
2201 /*E
2202      MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL`
2203 
2204     Values:
2205 +   `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default) - axis computed via principle component analysis, split uniformly
2206 .   `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC` - axis computed via principle component analysis, split barycentrically
2207 .   `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR` - axis along the largest extent of the bounding box, split uniformly
2208 -   `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically
2209 
2210    Level: intermediate
2211 
2212     Note:
2213     Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types
2214 
2215 .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType`
2216 E*/
2217 typedef enum {
2218   MAT_HTOOL_CLUSTERING_PCA_REGULAR,
2219   MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC,
2220   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR,
2221   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC
2222 } MatHtoolClusteringType;
2223 #endif
2224 
2225 #ifdef PETSC_HAVE_MUMPS
2226 PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt);
2227 PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *);
2228 PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal);
2229 PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *);
2230 
2231 PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *);
2232 PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *);
2233 PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *);
2234 PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *);
2235 PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **);
2236 PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat);
2237 PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat);
2238 #endif
2239 
2240 #ifdef PETSC_HAVE_MKL_PARDISO
2241 PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt);
2242 #endif
2243 
2244 #ifdef PETSC_HAVE_MKL_CPARDISO
2245 PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt);
2246 #endif
2247 
2248 #ifdef PETSC_HAVE_SUPERLU
2249 PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal);
2250 #endif
2251 
2252 #ifdef PETSC_HAVE_SUPERLU_DIST
2253 PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *);
2254 #endif
2255 
2256 #ifdef PETSC_HAVE_STRUMPACK
2257 /*E
2258     MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK``
2259 
2260     Values:
2261 +  `MAT_STRUMPACK_NATURAL` - use the current ordering
2262 .  `MAT_STRUMPACK_METIS` - use MeTis to compute an ordering
2263 .  `MAT_STRUMPACK_PARMETIS` - use ParMeTis to compute an ordering
2264 .  `MAT_STRUMPACK_SCOTCH` - use Scotch to compute an ordering
2265 .  `MAT_STRUMPACK_PTSCOTCH` - use parallel Scotch to compute an ordering
2266 -  `MAT_STRUMPACK_RCM` - use an RCM ordering
2267 
2268     Level: intermediate
2269 
2270     Developer Note:
2271     Should be called `MatSTRUMPACKReorderingType`
2272 
2273 .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetHSSRelTol()`, `MatSTRUMPACKSetReordering()`
2274 E*/
2275 typedef enum {
2276   MAT_STRUMPACK_NATURAL  = 0,
2277   MAT_STRUMPACK_METIS    = 1,
2278   MAT_STRUMPACK_PARMETIS = 2,
2279   MAT_STRUMPACK_SCOTCH   = 3,
2280   MAT_STRUMPACK_PTSCOTCH = 4,
2281   MAT_STRUMPACK_RCM      = 5
2282 } MatSTRUMPACKReordering;
2283 
2284 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering);
2285 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool);
2286 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSRelTol(Mat, PetscReal);
2287 PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSTRUMPACKSetHSSRelTol()", ) static inline PetscErrorCode MatSTRUMPACKSetHSSRelCompTol(Mat mat, PetscReal rtol)
2288 {
2289   return MatSTRUMPACKSetHSSRelTol(mat, rtol);
2290 }
2291 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSAbsTol(Mat, PetscReal);
2292 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMinSepSize(Mat, PetscInt);
2293 PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSTRUMPACKSetHSSMinSepSize()", ) static inline PetscErrorCode MatSTRUMPACKSetHSSMinSize(Mat mat, PetscInt hssminsize)
2294 {
2295   return MatSTRUMPACKSetHSSMinSepSize(mat, hssminsize);
2296 }
2297 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMaxRank(Mat, PetscInt);
2298 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSLeafSize(Mat, PetscInt);
2299 #endif
2300 
2301 PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool);
2302 PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *);
2303 PETSC_DEPRECATED_FUNCTION(3, 13, 0, "MatBindToCPU()", ) static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg)
2304 {
2305   return MatBindToCPU(A, flg);
2306 }
2307 PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool);
2308 PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *);
2309 
2310 #ifdef PETSC_HAVE_CUDA
2311 /*E
2312     MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU)
2313     matrices.
2314 
2315     Values:
2316 +   `MAT_CUSPARSE_CSR` - Compressed Sparse Row
2317 .   `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later).
2318 -   `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later).
2319 
2320     Level: intermediate
2321 
2322 .seealso: [](ch_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation`
2323 E*/
2324 
2325 typedef enum {
2326   MAT_CUSPARSE_CSR,
2327   MAT_CUSPARSE_ELL,
2328   MAT_CUSPARSE_HYB
2329 } MatCUSPARSEStorageFormat;
2330 
2331 /* these will be strings associated with enumerated type defined above */
2332 PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[];
2333 
2334 /*E
2335     MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU)
2336     matrices whose operation should use a particular storage format.
2337 
2338     Values:
2339 +   `MAT_CUSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel MatMult
2340 .   `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel MatMult
2341 .   `MAT_CUSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) MatMult
2342 -   `MAT_CUSPARSE_ALL` - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices
2343 
2344     Level: intermediate
2345 
2346 .seealso: [](ch_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat`
2347 E*/
2348 typedef enum {
2349   MAT_CUSPARSE_MULT_DIAG,
2350   MAT_CUSPARSE_MULT_OFFDIAG,
2351   MAT_CUSPARSE_MULT,
2352   MAT_CUSPARSE_ALL
2353 } MatCUSPARSEFormatOperation;
2354 
2355 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2356 PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2357 PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat);
2358 PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool);
2359 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
2360 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
2361 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **);
2362 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **);
2363 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **);
2364 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **);
2365 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **);
2366 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **);
2367 
2368 PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
2369 PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
2370 PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **);
2371 PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **);
2372 PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **);
2373 PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **);
2374 PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **);
2375 PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **);
2376 PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *);
2377 PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *);
2378 PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat);
2379 PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *);
2380 
2381 PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2382 PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2383 #endif
2384 
2385 #ifdef PETSC_HAVE_HIP
2386 /*E
2387     MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU)
2388     matrices.
2389 
2390     Values:
2391 +   `MAT_HIPSPARSE_CSR` - Compressed Sparse Row
2392 .   `MAT_HIPSPARSE_ELL` - Ellpack
2393 -   `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format
2394 
2395     Level: intermediate
2396 
2397 .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation`
2398 E*/
2399 
2400 typedef enum {
2401   MAT_HIPSPARSE_CSR,
2402   MAT_HIPSPARSE_ELL,
2403   MAT_HIPSPARSE_HYB
2404 } MatHIPSPARSEStorageFormat;
2405 
2406 /* these will be strings associated with enumerated type defined above */
2407 PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[];
2408 
2409 /*E
2410     MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU)
2411     matrices whose operation should use a particular storage format.
2412 
2413     Values:
2414 +   `MAT_HIPSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()`
2415 .   `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel `MatMult()`
2416 .   `MAT_HIPSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()`
2417 -   `MAT_HIPSPARSE_ALL` - sets the storage format for all HIPSPARSE (GPU) matrices
2418 
2419     Level: intermediate
2420 
2421 .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat`
2422 E*/
2423 typedef enum {
2424   MAT_HIPSPARSE_MULT_DIAG,
2425   MAT_HIPSPARSE_MULT_OFFDIAG,
2426   MAT_HIPSPARSE_MULT,
2427   MAT_HIPSPARSE_ALL
2428 } MatHIPSPARSEFormatOperation;
2429 
2430 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2431 PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2432 PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat);
2433 PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool);
2434 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
2435 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
2436 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **);
2437 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **);
2438 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **);
2439 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **);
2440 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **);
2441 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **);
2442 
2443 PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
2444 PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
2445 PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **);
2446 PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **);
2447 PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **);
2448 PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **);
2449 PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **);
2450 PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **);
2451 PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *);
2452 PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *);
2453 PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat);
2454 PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *);
2455 #endif
2456 
2457 #if defined(PETSC_HAVE_VIENNACL)
2458 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2459 PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2460 #endif
2461 
2462 #if PetscDefined(HAVE_KOKKOS)
2463 PETSC_EXTERN PetscErrorCode MatCreateAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2464 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJKokkos(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2465 #endif
2466 
2467 #if defined(PETSC_HAVE_FFTW)
2468 PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec);
2469 PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec);
2470 PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *);
2471 #endif
2472 
2473 #if defined(PETSC_HAVE_SCALAPACK)
2474 PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2475 PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt);
2476 PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *);
2477 #endif
2478 
2479 PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *);
2480 PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *);
2481 PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]);
2482 PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]);
2483 PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***);
2484 PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *);
2485 PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType);
2486 PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]);
2487 PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat);
2488 
2489 PETSC_EXTERN PetscErrorCode MatFilter(Mat, PetscReal, PetscBool, PetscBool);
2490 PETSC_DEPRECATED_FUNCTION(3, 20, 0, "MatFilter()", ) static inline PetscErrorCode MatChop(Mat A, PetscReal tol)
2491 {
2492   return MatFilter(A, tol, PETSC_FALSE, PETSC_FALSE);
2493 }
2494 PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *);
2495 
2496 PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **);
2497 
2498 PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat);
2499 
2500 PETSC_INTERN PetscErrorCode MatHeaderMerge(Mat, Mat *);
2501 PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *);
2502 
2503 PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *);
2504 
2505 PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, Mat *);
2506 PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat, PetscBool);
2507 
2508 PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *);
2509 #endif
2510