1 /* 2 Include file for the matrix component of PETSc 3 */ 4 #ifndef PETSCMAT_H 5 #define PETSCMAT_H 6 7 #include <petscvec.h> 8 9 /* SUBMANSEC = Mat */ 10 11 /*S 12 Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without 13 an explicit sparse representation (such as matrix-free operators) 14 15 Level: beginner 16 17 Note: 18 See [](doc_matrix), [](ch_matrices) and `MatType` for available matrix types 19 20 .seealso: [](doc_matrix), [](ch_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()` 21 S*/ 22 typedef struct _p_Mat *Mat; 23 24 /*J 25 MatType - String with the name of a PETSc matrix type 26 27 Level: beginner 28 29 Note: 30 [](doc_matrix) for a table of available matrix types 31 32 .seealso: [](doc_matrix), [](ch_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()` 33 J*/ 34 typedef const char *MatType; 35 #define MATSAME "same" 36 #define MATMAIJ "maij" 37 #define MATSEQMAIJ "seqmaij" 38 #define MATMPIMAIJ "mpimaij" 39 #define MATKAIJ "kaij" 40 #define MATSEQKAIJ "seqkaij" 41 #define MATMPIKAIJ "mpikaij" 42 #define MATIS "is" 43 #define MATAIJ "aij" 44 #define MATSEQAIJ "seqaij" 45 #define MATMPIAIJ "mpiaij" 46 #define MATAIJCRL "aijcrl" 47 #define MATSEQAIJCRL "seqaijcrl" 48 #define MATMPIAIJCRL "mpiaijcrl" 49 #define MATAIJCUSPARSE "aijcusparse" 50 #define MATSEQAIJCUSPARSE "seqaijcusparse" 51 #define MATMPIAIJCUSPARSE "mpiaijcusparse" 52 #define MATAIJHIPSPARSE "aijhipsparse" 53 #define MATSEQAIJHIPSPARSE "seqaijhipsparse" 54 #define MATMPIAIJHIPSPARSE "mpiaijhipsparse" 55 #define MATAIJKOKKOS "aijkokkos" 56 #define MATSEQAIJKOKKOS "seqaijkokkos" 57 #define MATMPIAIJKOKKOS "mpiaijkokkos" 58 #define MATAIJVIENNACL "aijviennacl" 59 #define MATSEQAIJVIENNACL "seqaijviennacl" 60 #define MATMPIAIJVIENNACL "mpiaijviennacl" 61 #define MATAIJPERM "aijperm" 62 #define MATSEQAIJPERM "seqaijperm" 63 #define MATMPIAIJPERM "mpiaijperm" 64 #define MATAIJSELL "aijsell" 65 #define MATSEQAIJSELL "seqaijsell" 66 #define MATMPIAIJSELL "mpiaijsell" 67 #define MATAIJMKL "aijmkl" 68 #define MATSEQAIJMKL "seqaijmkl" 69 #define MATMPIAIJMKL "mpiaijmkl" 70 #define MATBAIJMKL "baijmkl" 71 #define MATSEQBAIJMKL "seqbaijmkl" 72 #define MATMPIBAIJMKL "mpibaijmkl" 73 #define MATSHELL "shell" 74 #define MATCENTERING "centering" 75 #define MATDENSE "dense" 76 #define MATDENSECUDA "densecuda" 77 #define MATDENSEHIP "densehip" 78 #define MATSEQDENSE "seqdense" 79 #define MATSEQDENSECUDA "seqdensecuda" 80 #define MATSEQDENSEHIP "seqdensehip" 81 #define MATMPIDENSE "mpidense" 82 #define MATMPIDENSECUDA "mpidensecuda" 83 #define MATMPIDENSEHIP "mpidensehip" 84 #define MATELEMENTAL "elemental" 85 #define MATSCALAPACK "scalapack" 86 #define MATBAIJ "baij" 87 #define MATSEQBAIJ "seqbaij" 88 #define MATMPIBAIJ "mpibaij" 89 #define MATMPIADJ "mpiadj" 90 #define MATSBAIJ "sbaij" 91 #define MATSEQSBAIJ "seqsbaij" 92 #define MATMPISBAIJ "mpisbaij" 93 #define MATMFFD "mffd" 94 #define MATNORMAL "normal" 95 #define MATNORMALHERMITIAN "normalh" 96 #define MATLRC "lrc" 97 #define MATSCATTER "scatter" 98 #define MATBLOCKMAT "blockmat" 99 #define MATCOMPOSITE "composite" 100 #define MATFFT "fft" 101 #define MATFFTW "fftw" 102 #define MATSEQCUFFT "seqcufft" 103 #define MATSEQHIPFFT "seqhipfft" 104 #define MATTRANSPOSEMAT PETSC_DEPRECATED_MACRO(3, 18, 0, "MATTRANSPOSEVIRTUAL", ) "transpose" 105 #define MATTRANSPOSEVIRTUAL "transpose" 106 #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose" 107 #define MATSCHURCOMPLEMENT "schurcomplement" 108 #define MATPYTHON "python" 109 #define MATHYPRE "hypre" 110 #define MATHYPRESTRUCT "hyprestruct" 111 #define MATHYPRESSTRUCT "hypresstruct" 112 #define MATSUBMATRIX "submatrix" 113 #define MATLOCALREF "localref" 114 #define MATNEST "nest" 115 #define MATPREALLOCATOR "preallocator" 116 #define MATSELL "sell" 117 #define MATSEQSELL "seqsell" 118 #define MATMPISELL "mpisell" 119 #define MATSELLCUDA "sellcuda" 120 #define MATSEQSELLCUDA "seqsellcuda" 121 #define MATMPISELLCUDA "mpisellcuda" 122 #define MATDUMMY "dummy" 123 #define MATLMVM "lmvm" 124 #define MATLMVMDFP "lmvmdfp" 125 #define MATLMVMBFGS "lmvmbfgs" 126 #define MATLMVMSR1 "lmvmsr1" 127 #define MATLMVMBROYDEN "lmvmbroyden" 128 #define MATLMVMBADBROYDEN "lmvmbadbroyden" 129 #define MATLMVMSYMBROYDEN "lmvmsymbroyden" 130 #define MATLMVMSYMBADBROYDEN "lmvmsymbadbroyden" 131 #define MATLMVMDIAGBROYDEN "lmvmdiagbroyden" 132 #define MATCONSTANTDIAGONAL "constantdiagonal" 133 #define MATDIAGONAL "diagonal" 134 #define MATHTOOL "htool" 135 #define MATH2OPUS "h2opus" 136 137 /*J 138 MatSolverType - String with the name of a PETSc factorization based matrix solver type. 139 140 For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc 141 142 Level: beginner 143 144 Note: 145 `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as 146 a ./configure option to install them 147 148 .seealso: [](sec_matfactor), [](ch_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()` 149 J*/ 150 typedef const char *MatSolverType; 151 #define MATSOLVERSUPERLU "superlu" 152 #define MATSOLVERSUPERLU_DIST "superlu_dist" 153 #define MATSOLVERSTRUMPACK "strumpack" 154 #define MATSOLVERUMFPACK "umfpack" 155 #define MATSOLVERCHOLMOD "cholmod" 156 #define MATSOLVERKLU "klu" 157 #define MATSOLVERELEMENTAL "elemental" 158 #define MATSOLVERSCALAPACK "scalapack" 159 #define MATSOLVERESSL "essl" 160 #define MATSOLVERLUSOL "lusol" 161 #define MATSOLVERMUMPS "mumps" 162 #define MATSOLVERMKL_PARDISO "mkl_pardiso" 163 #define MATSOLVERMKL_CPARDISO "mkl_cpardiso" 164 #define MATSOLVERPASTIX "pastix" 165 #define MATSOLVERMATLAB "matlab" 166 #define MATSOLVERPETSC "petsc" 167 #define MATSOLVERBAS "bas" 168 #define MATSOLVERCUSPARSE "cusparse" 169 #define MATSOLVERCUDA "cuda" 170 #define MATSOLVERHIPSPARSE "hipsparse" 171 #define MATSOLVERHIP "hip" 172 #define MATSOLVERKOKKOS "kokkos" 173 #define MATSOLVERSPQR "spqr" 174 175 /*E 176 MatFactorType - indicates what type of factorization is requested 177 178 Values: 179 + `MAT_FACTOR_LU` - LU factorization 180 . `MAT_FACTOR_CHOLESKY` - Cholesky factorization 181 . `MAT_FACTOR_ILU` - ILU factorization 182 . `MAT_FACTOR_ICC` - incomplete Cholesky factorization 183 . `MAT_FACTOR_ILUDT` - ILU factorization with drop tolerance 184 - `MAT_FACTOR_QR` - QR factorization 185 186 Level: beginner 187 188 .seealso: [](ch_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()` 189 E*/ 190 typedef enum { 191 MAT_FACTOR_NONE, 192 MAT_FACTOR_LU, 193 MAT_FACTOR_CHOLESKY, 194 MAT_FACTOR_ILU, 195 MAT_FACTOR_ICC, 196 MAT_FACTOR_ILUDT, 197 MAT_FACTOR_QR, 198 MAT_FACTOR_NUM_TYPES 199 } MatFactorType; 200 PETSC_EXTERN const char *const MatFactorTypes[]; 201 202 PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *); 203 PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *); 204 PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *); 205 PETSC_DEPRECATED_FUNCTION(3, 15, 0, "MatFactorGetCanUseOrdering()", ) static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b) 206 { 207 return MatFactorGetCanUseOrdering(A, b); 208 } 209 PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *); 210 PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *); 211 PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType); 212 PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatSolverFunction)(Mat, MatFactorType, Mat *); 213 PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFunction); 214 PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFunction *); 215 typedef MatSolverType MatSolverPackage PETSC_DEPRECATED_TYPEDEF(3, 9, 0, "MatSolverType", ); 216 PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeRegister()", ) static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFunction f) 217 { 218 return MatSolverTypeRegister(stype, mtype, ftype, f); 219 } 220 PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeGet()", ) static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFunction *f) 221 { 222 return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f); 223 } 224 225 /*E 226 MatProductType - indicates what type of matrix product is requested 227 228 Values: 229 + `MATPRODUCT_AB` - product of two matrices 230 . `MATPRODUCT_AtB` - product of the transpose of a given matrix with a matrix 231 . `MATPRODUCT_ABt` - product of a matrix with the transpose of another given matrix 232 . `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself 233 . `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix 234 - `MATPRODUCT_ABC` - the product of three matrices 235 236 Level: beginner 237 238 .seealso: [](sec_matmatproduct), [](ch_matrices), `MatProductSetType()` 239 E*/ 240 typedef enum { 241 MATPRODUCT_UNSPECIFIED = 0, 242 MATPRODUCT_AB, 243 MATPRODUCT_AtB, 244 MATPRODUCT_ABt, 245 MATPRODUCT_PtAP, 246 MATPRODUCT_RARt, 247 MATPRODUCT_ABC 248 } MatProductType; 249 PETSC_EXTERN const char *const MatProductTypes[]; 250 251 /*J 252 MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation 253 254 Level: beginner 255 256 .seealso: [](sec_matmatproduct), [](ch_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType` 257 J*/ 258 typedef const char *MatProductAlgorithm; 259 #define MATPRODUCTALGORITHMDEFAULT "default" 260 #define MATPRODUCTALGORITHMSORTED "sorted" 261 #define MATPRODUCTALGORITHMSCALABLE "scalable" 262 #define MATPRODUCTALGORITHMSCALABLEFAST "scalable_fast" 263 #define MATPRODUCTALGORITHMHEAP "heap" 264 #define MATPRODUCTALGORITHMBHEAP "btheap" 265 #define MATPRODUCTALGORITHMLLCONDENSED "llcondensed" 266 #define MATPRODUCTALGORITHMROWMERGE "rowmerge" 267 #define MATPRODUCTALGORITHMOUTERPRODUCT "outerproduct" 268 #define MATPRODUCTALGORITHMATB "at*b" 269 #define MATPRODUCTALGORITHMRAP "rap" 270 #define MATPRODUCTALGORITHMNONSCALABLE "nonscalable" 271 #define MATPRODUCTALGORITHMSEQMPI "seqmpi" 272 #define MATPRODUCTALGORITHMBACKEND "backend" 273 #define MATPRODUCTALGORITHMOVERLAPPING "overlapping" 274 #define MATPRODUCTALGORITHMMERGED "merged" 275 #define MATPRODUCTALGORITHMALLATONCE "allatonce" 276 #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged" 277 #define MATPRODUCTALGORITHMALLGATHERV "allgatherv" 278 #define MATPRODUCTALGORITHMCYCLIC "cyclic" 279 #if defined(PETSC_HAVE_HYPRE) 280 #define MATPRODUCTALGORITHMHYPRE "hypre" 281 #endif 282 283 PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *); 284 PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat); 285 PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType); 286 PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm); 287 PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal); 288 PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat); 289 PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat); 290 PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat); 291 PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat); 292 PETSC_EXTERN PetscErrorCode MatProductClear(Mat); 293 PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer); 294 PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *); 295 PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *); 296 297 /* Logging support */ 298 #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */ 299 PETSC_EXTERN PetscClassId MAT_CLASSID; 300 PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID; 301 PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID; 302 PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID; 303 PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID; 304 PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID; 305 PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID; 306 PETSC_EXTERN PetscClassId MATMFFD_CLASSID; 307 308 /*E 309 MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions 310 are to be reused to store the new matrix values. 311 312 Values: 313 + `MAT_INITIAL_MATRIX` - create a new matrix 314 . `MAT_REUSE_MATRIX` - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX` 315 . `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions) 316 - `MAT_IGNORE_MATRIX` - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions) 317 318 Level: beginner 319 320 .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()` 321 E*/ 322 typedef enum { 323 MAT_INITIAL_MATRIX, 324 MAT_REUSE_MATRIX, 325 MAT_IGNORE_MATRIX, 326 MAT_INPLACE_MATRIX 327 } MatReuse; 328 329 /*E 330 MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()` 331 include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`. 332 333 Level: developer 334 335 Values: 336 + `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values 337 - `MAT_GET_VALUES` - copy the matrix values 338 339 Developer Note: 340 Why is not just a boolean used for this information? 341 342 .seealso: [](ch_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()` 343 E*/ 344 typedef enum { 345 MAT_DO_NOT_GET_VALUES, 346 MAT_GET_VALUES 347 } MatCreateSubMatrixOption; 348 349 PETSC_EXTERN PetscErrorCode MatInitializePackage(void); 350 351 PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *); 352 PETSC_EXTERN PetscErrorCode MatCreateFromOptions(MPI_Comm, const char *, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 353 PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt); 354 PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType); 355 PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *); 356 PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType); 357 PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat); 358 PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]); 359 PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat)); 360 PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]); 361 PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]); 362 PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]); 363 PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]); 364 PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]); 365 PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]); 366 PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool); 367 368 PETSC_EXTERN PetscFunctionList MatList; 369 PETSC_EXTERN PetscFunctionList MatColoringList; 370 PETSC_EXTERN PetscFunctionList MatPartitioningList; 371 372 /*E 373 MatStructure - Indicates if two matrices have the same nonzero structure 374 375 Values: 376 + `SAME_NONZERO_PATTERN` - the two matrices have identical nonzero patterns 377 . `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns 378 . `SUBSET_NONZERO_PATTERN` - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix 379 - `UNKNOWN_NONZERO_PATTERN` - there is no known relationship between the nonzero patterns. In this case the implementations 380 may try to detect a relationship to optimize the operation 381 382 Level: beginner 383 384 .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()` 385 E*/ 386 typedef enum { 387 DIFFERENT_NONZERO_PATTERN, 388 SUBSET_NONZERO_PATTERN, 389 SAME_NONZERO_PATTERN, 390 UNKNOWN_NONZERO_PATTERN 391 } MatStructure; 392 PETSC_EXTERN const char *const MatStructures[]; 393 394 #if defined PETSC_HAVE_MKL_SPARSE 395 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 396 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 397 PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 398 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 399 #endif 400 401 PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 402 PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 403 PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]); 404 PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 405 PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *); 406 PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *); 407 PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *); 408 PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt); 409 PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *); 410 411 PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 412 PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 413 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 414 PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 415 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 416 PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 417 PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]); 418 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *); 419 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *); 420 421 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 422 PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 423 PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 424 425 PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]); 426 PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]); 427 PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode); 428 429 PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *); 430 PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 431 432 PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 433 PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *); 434 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 435 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 436 PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]); 437 438 PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *); 439 PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *); 440 PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *); 441 PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *); 442 PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *); 443 PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *); 444 PETSC_EXTERN PetscErrorCode MatLRCSetMats(Mat, Mat, Mat, Vec, Mat); 445 PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *); 446 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 447 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 448 449 PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *); 450 PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter); 451 PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *); 452 PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *); 453 PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat); 454 PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat); 455 typedef enum { 456 MAT_COMPOSITE_MERGE_RIGHT, 457 MAT_COMPOSITE_MERGE_LEFT 458 } MatCompositeMergeType; 459 PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType); 460 PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *); 461 typedef enum { 462 MAT_COMPOSITE_ADDITIVE, 463 MAT_COMPOSITE_MULTIPLICATIVE 464 } MatCompositeType; 465 PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType); 466 PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *); 467 PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure); 468 PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *); 469 PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *); 470 PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *); 471 PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *); 472 473 PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *); 474 PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *); 475 476 PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *); 477 PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *); 478 PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *); 479 PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *); 480 PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *); 481 PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *); 482 PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *); 483 PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS); 484 PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *); 485 PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *); 486 PETSC_EXTERN PetscErrorCode MatCreateDiagonal(Vec, Mat *); 487 PETSC_EXTERN PetscErrorCode MatDiagonalGetDiagonal(Mat, Vec *); 488 PETSC_EXTERN PetscErrorCode MatDiagonalRestoreDiagonal(Mat, Vec *); 489 PETSC_EXTERN PetscErrorCode MatDiagonalGetInverseDiagonal(Mat, Vec *); 490 PETSC_EXTERN PetscErrorCode MatDiagonalRestoreInverseDiagonal(Mat, Vec *); 491 492 #if defined(PETSC_HAVE_HYPRE) 493 PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 494 #endif 495 496 PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]); 497 PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]); 498 499 PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat); 500 PETSC_EXTERN PetscErrorCode MatSetUp(Mat); 501 PETSC_EXTERN PetscErrorCode MatDestroy(Mat *); 502 PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *); 503 504 PETSC_EXTERN PetscErrorCode MatConjugate(Mat); 505 PETSC_EXTERN PetscErrorCode MatRealPart(Mat); 506 PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat); 507 PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *); 508 PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *); 509 PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **); 510 PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *); 511 PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat); 512 PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *); 513 PETSC_EXTERN PetscErrorCode MatComputeVariableBlockEnvelope(Mat); 514 515 PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 516 PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode); 517 PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 518 PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]); 519 PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]); 520 PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]); 521 PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom); 522 523 /*S 524 MatStencil - Data structure (C struct) for storing information about rows and 525 columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()` 526 527 Level: beginner 528 529 Notes: 530 The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored). 531 The c represents the the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored. 532 533 For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`. 534 535 For staggered grids, see `DMStagStencil` 536 537 Fortran Note: 538 See `MatSetValuesStencil()` for details. 539 540 .seealso: [](ch_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`, 541 `DMStagStencil` 542 S*/ 543 typedef struct { 544 PetscInt k, j, i, c; 545 } MatStencil; 546 547 PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 548 PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode); 549 PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt); 550 551 /*E 552 MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use 553 554 Values: 555 + `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix 556 - `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted 557 558 Level: beginner 559 560 .seealso: [](ch_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()` 561 E*/ 562 typedef enum { 563 MAT_FLUSH_ASSEMBLY = 1, 564 MAT_FINAL_ASSEMBLY = 0 565 } MatAssemblyType; 566 PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType); 567 PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType); 568 PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *); 569 570 /*E 571 MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage 572 573 Level: beginner 574 575 Note: 576 See `MatSetOption()` for the use of the options 577 578 Developer Note: 579 Entries that are negative need not be called collectively by all processes. 580 581 .seealso: [](ch_matrices), `Mat`, `MatSetOption()` 582 E*/ 583 typedef enum { 584 MAT_OPTION_MIN = -3, 585 MAT_UNUSED_NONZERO_LOCATION_ERR = -2, 586 MAT_ROW_ORIENTED = -1, 587 MAT_SYMMETRIC = 1, 588 MAT_STRUCTURALLY_SYMMETRIC = 2, 589 MAT_FORCE_DIAGONAL_ENTRIES = 3, 590 MAT_IGNORE_OFF_PROC_ENTRIES = 4, 591 MAT_USE_HASH_TABLE = 5, 592 MAT_KEEP_NONZERO_PATTERN = 6, 593 MAT_IGNORE_ZERO_ENTRIES = 7, 594 MAT_USE_INODES = 8, 595 MAT_HERMITIAN = 9, 596 MAT_SYMMETRY_ETERNAL = 10, 597 MAT_NEW_NONZERO_LOCATION_ERR = 11, 598 MAT_IGNORE_LOWER_TRIANGULAR = 12, 599 MAT_ERROR_LOWER_TRIANGULAR = 13, 600 MAT_GETROW_UPPERTRIANGULAR = 14, 601 MAT_SPD = 15, 602 MAT_NO_OFF_PROC_ZERO_ROWS = 16, 603 MAT_NO_OFF_PROC_ENTRIES = 17, 604 MAT_NEW_NONZERO_LOCATIONS = 18, 605 MAT_NEW_NONZERO_ALLOCATION_ERR = 19, 606 MAT_SUBSET_OFF_PROC_ENTRIES = 20, 607 MAT_SUBMAT_SINGLEIS = 21, 608 MAT_STRUCTURE_ONLY = 22, 609 MAT_SORTED_FULL = 23, 610 MAT_FORM_EXPLICIT_TRANSPOSE = 24, 611 MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25, 612 MAT_SPD_ETERNAL = 26, 613 MAT_OPTION_MAX = 27 614 } MatOption; 615 616 PETSC_EXTERN const char *const *MatOptions; 617 PETSC_EXTERN PetscErrorCode MatSetOption(Mat, MatOption, PetscBool); 618 PETSC_EXTERN PetscErrorCode MatGetOption(Mat, MatOption, PetscBool *); 619 PETSC_EXTERN PetscErrorCode MatPropagateSymmetryOptions(Mat, Mat); 620 PETSC_EXTERN PetscErrorCode MatGetType(Mat, MatType *); 621 622 PETSC_EXTERN PetscErrorCode MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 623 PETSC_EXTERN PetscErrorCode MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 624 PETSC_EXTERN PetscErrorCode MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]); 625 PETSC_EXTERN PetscErrorCode MatGetRowUpperTriangular(Mat); 626 PETSC_EXTERN PetscErrorCode MatRestoreRowUpperTriangular(Mat); 627 PETSC_EXTERN PetscErrorCode MatGetColumnVector(Mat, Vec, PetscInt); 628 PETSC_EXTERN PetscErrorCode MatSeqAIJGetArray(Mat, PetscScalar *[]); 629 PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]); 630 PETSC_EXTERN PetscErrorCode MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]); 631 PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArray(Mat, PetscScalar *[]); 632 PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]); 633 PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]); 634 PETSC_EXTERN PetscErrorCode MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *); 635 PETSC_EXTERN PetscErrorCode MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 636 PETSC_EXTERN PetscErrorCode MatSeqAIJSetType(Mat, MatType); 637 PETSC_EXTERN PetscErrorCode MatSeqAIJKron(Mat, Mat, MatReuse, Mat *); 638 PETSC_EXTERN PetscErrorCode MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *)); 639 PETSC_EXTERN PetscFunctionList MatSeqAIJList; 640 PETSC_EXTERN PetscErrorCode MatSeqBAIJGetArray(Mat, PetscScalar *[]); 641 PETSC_EXTERN PetscErrorCode MatSeqBAIJRestoreArray(Mat, PetscScalar *[]); 642 PETSC_EXTERN PetscErrorCode MatSeqSBAIJGetArray(Mat, PetscScalar *[]); 643 PETSC_EXTERN PetscErrorCode MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]); 644 PETSC_EXTERN PetscErrorCode MatDenseGetArray(Mat, PetscScalar *[]); 645 PETSC_EXTERN PetscErrorCode MatDenseRestoreArray(Mat, PetscScalar *[]); 646 PETSC_EXTERN PetscErrorCode MatDensePlaceArray(Mat, const PetscScalar[]); 647 PETSC_EXTERN PetscErrorCode MatDenseReplaceArray(Mat, const PetscScalar[]); 648 PETSC_EXTERN PetscErrorCode MatDenseResetArray(Mat); 649 PETSC_EXTERN PetscErrorCode MatDenseGetArrayRead(Mat, const PetscScalar *[]); 650 PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayRead(Mat, const PetscScalar *[]); 651 PETSC_EXTERN PetscErrorCode MatDenseGetArrayWrite(Mat, PetscScalar *[]); 652 PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWrite(Mat, PetscScalar *[]); 653 PETSC_EXTERN PetscErrorCode MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *); 654 PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]); 655 PETSC_EXTERN PetscErrorCode MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *); 656 PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]); 657 PETSC_EXTERN PetscErrorCode MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *); 658 PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]); 659 PETSC_EXTERN PetscErrorCode MatGetBlockSize(Mat, PetscInt *); 660 PETSC_EXTERN PetscErrorCode MatSetBlockSize(Mat, PetscInt); 661 PETSC_EXTERN PetscErrorCode MatGetBlockSizes(Mat, PetscInt *, PetscInt *); 662 PETSC_EXTERN PetscErrorCode MatSetBlockSizes(Mat, PetscInt, PetscInt); 663 PETSC_EXTERN PetscErrorCode MatSetBlockSizesFromMats(Mat, Mat, Mat); 664 PETSC_EXTERN PetscErrorCode MatSetVariableBlockSizes(Mat, PetscInt, PetscInt *); 665 PETSC_EXTERN PetscErrorCode MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt **); 666 667 PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]); 668 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]); 669 PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *); 670 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *); 671 PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *); 672 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *); 673 PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *); 674 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *); 675 PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 676 PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *); 677 678 PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec); 679 PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec); 680 PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec); 681 PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec); 682 PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec); 683 PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *); 684 PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *); 685 PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec); 686 PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec); 687 PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat); 688 PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat); 689 PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat); 690 PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec); 691 692 /*E 693 MatDuplicateOption - Indicates if a duplicated sparse matrix should have 694 its numerical values copied over or just its nonzero structure. 695 696 Values: 697 + `MAT_DO_NOT_COPY_VALUES` - Create a matrix using the same nonzero pattern as the original matrix, 698 with zeros for the numerical values 699 . `MAT_COPY_VALUES` - Create a matrix with the same nonzero pattern as the original matrix 700 and with the same numerical values. 701 - `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix 702 and does not copy it, using zeros for the numerical values. The parent and 703 child matrices will share their index (i and j) arrays, and you cannot 704 insert new nonzero entries into either matrix 705 706 Level: beginner 707 708 Note: 709 Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in 710 this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified. 711 712 .seealso: [](ch_matrices), `Mat`, `MatDuplicate()` 713 E*/ 714 typedef enum { 715 MAT_DO_NOT_COPY_VALUES, 716 MAT_COPY_VALUES, 717 MAT_SHARE_NONZERO_PATTERN 718 } MatDuplicateOption; 719 720 PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *); 721 PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *); 722 723 PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure); 724 PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer); 725 PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *); 726 PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *); 727 PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *); 728 PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *); 729 PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *); 730 PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *); 731 PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *); 732 PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *); 733 PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer); 734 735 PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 736 PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 737 PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 738 PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *); 739 740 /*S 741 MatInfo - Context of matrix information, used with `MatGetInfo()` 742 743 Level: intermediate 744 745 Fortran Note: 746 Information is stored as a double-precision array of dimension `MAT_INFO_SIZE` 747 748 .seealso: [](ch_matrices), `Mat`, `MatGetInfo()`, `MatInfoType` 749 S*/ 750 typedef struct { 751 PetscLogDouble block_size; /* block size */ 752 PetscLogDouble nz_allocated, nz_used, nz_unneeded; /* number of nonzeros */ 753 PetscLogDouble memory; /* memory allocated */ 754 PetscLogDouble assemblies; /* number of matrix assemblies called */ 755 PetscLogDouble mallocs; /* number of mallocs during MatSetValues() */ 756 PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */ 757 PetscLogDouble factor_mallocs; /* number of mallocs during factorization */ 758 } MatInfo; 759 760 /*E 761 MatInfoType - Indicates if you want information about the local part of the matrix, 762 the entire parallel matrix or the maximum over all the local parts. 763 764 Values: 765 + `MAT_LOCAL` - values for each MPI process part of the matrix 766 . `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes 767 - `MAT_GLOBAL_SUM` - sum of each value over all MPI processes 768 769 Level: beginner 770 771 .seealso: [](ch_matrices), `MatGetInfo()`, `MatInfo` 772 E*/ 773 typedef enum { 774 MAT_LOCAL = 1, 775 MAT_GLOBAL_MAX = 2, 776 MAT_GLOBAL_SUM = 3 777 } MatInfoType; 778 PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *); 779 PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec); 780 PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]); 781 PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]); 782 PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]); 783 PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]); 784 PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec); 785 PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *); 786 PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *); 787 PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat); 788 PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *); 789 PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *); 790 PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec); 791 PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode); 792 793 PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *); 794 PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *); 795 PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *); 796 PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 797 PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 798 PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *); 799 PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *); 800 PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 801 PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 802 PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 803 PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 804 PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *); 805 PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *); 806 807 PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *); 808 PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *); 809 PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *); 810 PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *); 811 PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *); 812 PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *); 813 PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *); 814 PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *); 815 PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *); 816 PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat); 817 PETSC_EXTERN PetscErrorCode MatSetInf(Mat); 818 PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 819 PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec); 820 PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 821 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec); 822 PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 823 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec); 824 825 PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *); 826 PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *); 827 PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *); 828 PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **); 829 PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *); 830 PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **); 831 PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *); 832 833 PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 834 PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrices()", ) static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 835 { 836 return MatCreateSubMatrices(mat, n, irow, icol, scall, submat); 837 } 838 PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 839 PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatricesMPI()", ) static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 840 { 841 return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat); 842 } 843 PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]); 844 PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]); 845 PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *); 846 PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrix()", ) static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat) 847 { 848 return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat); 849 } 850 PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *); 851 PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *); 852 PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *); 853 PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *); 854 855 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *); 856 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *); 857 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat); 858 PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *); 859 PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *); 860 PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *); 861 PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *); 862 PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *); 863 PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *); 864 PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]); 865 866 PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt); 867 PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov); 868 PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool); 869 870 PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 871 872 PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 873 PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *); 874 875 PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *); 876 PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *); 877 878 PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *); 879 PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *); 880 881 PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure); 882 PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure); 883 884 PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar); 885 PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar); 886 887 PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping); 888 PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 889 PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *); 890 PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout); 891 PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 892 PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 893 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec); 894 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec); 895 PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]); 896 PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 897 PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 898 899 PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt); 900 PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *); 901 902 PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec); 903 PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec); 904 PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec); 905 PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *); 906 PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *); 907 PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *); 908 PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *); 909 PETSC_DEPRECATED_FUNCTION(3, 6, 0, "MatCreateVecs()", ) static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y) 910 { 911 return MatCreateVecs(mat, x, y); 912 } 913 PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *); 914 PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *); 915 PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *); 916 PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *); 917 PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *); 918 919 /*MC 920 MatSetValue - Set a single entry into a matrix. 921 922 This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()` 923 MUST be called after all calls to `MatSetValue()` have been completed. 924 925 Synopsis: 926 #include <petscmat.h> 927 PetscErrorCode MatSetValue(Mat m,PetscInt i,PetscInt j,PetscScalar va,InsertMode mode) 928 929 Not Collective 930 931 Input Parameters: 932 + m - the matrix 933 . i - the row location of the entry 934 . j - the column location of the entry 935 . va - the value to insert 936 - mode - either `INSERT_VALUES` or `ADD_VALUES` 937 938 Level: beginner 939 940 Note: 941 For efficiency one should use `MatSetValues()` and set several values simultaneously. 942 943 .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `InsertMode`, `MatGetValue()`, `MatSetValues()`, 944 `MatSetValueLocal()`, `MatSetValuesLocal()` 945 M*/ 946 static inline PetscErrorCode MatSetValue(Mat m, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 947 { 948 return MatSetValues(m, 1, &i, 1, &j, &va, mode); 949 } 950 951 /*@C 952 MatGetValue - Gets a single value from a matrix 953 954 Not Collective; can only return a value owned by the given process 955 956 Input Parameters: 957 + mat - the matrix 958 . row - the row location of the entry 959 - col - the column location of the entry 960 961 Output Parameter: 962 . va - the value 963 964 Level: advanced 965 966 Notes: 967 The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd` before this call 968 969 For efficiency one should use `MatGetValues()` and get several values simultaneously. 970 971 See notes for `MatGetValues()`. 972 973 .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()` 974 @*/ 975 static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va) 976 { 977 return MatGetValues(mat, 1, &row, 1, &col, va); 978 } 979 980 /*MC 981 MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes. 982 983 Not Collective 984 985 Input Parameters: 986 + m - the matrix 987 . i - the row location of the entry 988 . j - the column location of the entry 989 . va - the value to insert 990 - mode - either `INSERT_VALUES` or `ADD_VALUES` 991 992 Level: intermediate 993 994 Notes: 995 For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously. 996 997 See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used. 998 999 .seealso: [](ch_matrices), `MatSetValue()`, `MatSetValuesLocal()` 1000 M*/ 1001 static inline PetscErrorCode MatSetValueLocal(Mat m, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode) 1002 { 1003 return MatSetValuesLocal(m, 1, &i, 1, &j, &va, mode); 1004 } 1005 1006 /*MC 1007 MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per 1008 row in a matrix providing the data that one can use to correctly preallocate the matrix. 1009 1010 Synopsis: 1011 #include <petscmat.h> 1012 PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz) 1013 1014 Collective 1015 1016 Input Parameters: 1017 + comm - the communicator that will share the eventually allocated matrix 1018 . nrows - the number of LOCAL rows in the matrix 1019 - ncols - the number of LOCAL columns in the matrix 1020 1021 Output Parameters: 1022 + dnz - the array that will be passed to the matrix preallocation routines 1023 - onz - the other array passed to the matrix preallocation routines 1024 1025 Level: deprecated (since v3.19) 1026 1027 Notes: 1028 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1029 the use of this routine 1030 1031 This is a macro that handles its own error checking, it does not return an error code. 1032 1033 Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1034 1035 Developer Note: 1036 This is a MACRO not a function because it has a leading { that is closed by `PetscPreallocateFinalize()`. 1037 1038 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1039 `MatPreallocateSymmetricSetLocalBlock()` 1040 M*/ 1041 #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \ 1042 do { \ 1043 PetscInt __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \ 1044 PetscInt PETSC_UNUSED __start; \ 1045 PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \ 1046 PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \ 1047 __start = __end - __ncols; \ 1048 (void)__start; \ 1049 PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \ 1050 __rstart -= __nrows 1051 1052 #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateBegin()", ) MatPreallocateBegin(__VA_ARGS__) 1053 1054 /*MC 1055 MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1056 inserted using a local number of the rows and columns 1057 1058 Synopsis: 1059 #include <petscmat.h> 1060 PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1061 1062 Not Collective 1063 1064 Input Parameters: 1065 + map - the row mapping from local numbering to global numbering 1066 . nrows - the number of rows indicated 1067 . rows - the indices of the rows 1068 . cmap - the column mapping from local to global numbering 1069 . ncols - the number of columns in the matrix 1070 . cols - the columns indicated 1071 . dnz - the array that will be passed to the matrix preallocation routines 1072 - onz - the other array passed to the matrix preallocation routines 1073 1074 Level: deprecated (since v3.19) 1075 1076 Notes: 1077 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1078 the use of this routine 1079 1080 Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1081 1082 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1083 `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()` 1084 M*/ 1085 #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 1086 PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1087 1088 /*MC 1089 MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1090 inserted using a local number of the rows and columns. This version removes any duplicate columns in cols 1091 1092 Synopsis: 1093 #include <petscmat.h> 1094 PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1095 1096 Not Collective 1097 1098 Input Parameters: 1099 + map - the row mapping from local numbering to global numbering 1100 . nrows - the number of rows indicated 1101 . rows - the indices of the rows (these values are mapped to the global values) 1102 . cmap - the column mapping from local to global numbering 1103 . ncols - the number of columns in the matrix (this value will be changed if duplicate columns are found) 1104 . cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed) 1105 . dnz - the array that will be passed to the matrix preallocation routines 1106 - onz - the other array passed to the matrix preallocation routines 1107 1108 Level: deprecated (since v3.19) 1109 1110 Notes: 1111 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1112 the use of this routine 1113 1114 Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1115 1116 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1117 `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1118 M*/ 1119 #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 1120 PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1121 1122 /*MC 1123 MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1124 inserted using a local number of the rows and columns 1125 1126 Synopsis: 1127 #include <petscmat.h> 1128 PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1129 1130 Not Collective 1131 1132 Input Parameters: 1133 + map - the row mapping from local numbering to global numbering 1134 . nrows - the number of rows indicated 1135 . rows - the indices of the rows 1136 . cmap - the column mapping from local to global numbering 1137 . ncols - the number of columns in the matrix 1138 . cols - the columns indicated 1139 . dnz - the array that will be passed to the matrix preallocation routines 1140 - onz - the other array passed to the matrix preallocation routines 1141 1142 Level: deprecated (since v3.19) 1143 1144 Notes: 1145 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1146 the use of this routine 1147 1148 Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1149 1150 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1151 `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()` 1152 M*/ 1153 #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \ 1154 PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));) 1155 1156 /*MC 1157 MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1158 inserted using a local number of the rows and columns 1159 1160 Synopsis: 1161 #include <petscmat.h> 1162 PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1163 1164 Not Collective 1165 1166 Input Parameters: 1167 + map - the mapping between local numbering and global numbering 1168 . nrows - the number of rows indicated 1169 . rows - the indices of the rows 1170 . ncols - the number of columns in the matrix 1171 . cols - the columns indicated 1172 . dnz - the array that will be passed to the matrix preallocation routines 1173 - onz - the other array passed to the matrix preallocation routines 1174 1175 Level: deprecated (since v3.19) 1176 1177 Notes: 1178 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1179 the use of this routine 1180 1181 Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1182 1183 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()` 1184 `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1185 M*/ 1186 #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \ 1187 PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));) 1188 1189 /*MC 1190 MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1191 inserted using a local number of the rows and columns 1192 1193 Synopsis: 1194 #include <petscmat.h> 1195 PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1196 1197 Not Collective 1198 1199 Input Parameters: 1200 + row - the row 1201 . ncols - the number of columns in the matrix 1202 - cols - the columns indicated 1203 1204 Output Parameters: 1205 + dnz - the array that will be passed to the matrix preallocation routines 1206 - onz - the other array passed to the matrix preallocation routines 1207 1208 Level: deprecated (since v3.19) 1209 1210 Notes: 1211 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1212 the use of this routine 1213 1214 Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1215 1216 This is a MACRO not a function because it uses variables declared in MatPreallocateBegin(). 1217 1218 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()` 1219 `MatPreallocateBegin()`, `MatPreallocateSetLocal()` 1220 M*/ 1221 #define MatPreallocateSet(row, nc, cols, dnz, onz) \ 1222 PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \ 1223 if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \ 1224 else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 1225 }) 1226 1227 /*MC 1228 MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 1229 inserted using a local number of the rows and columns 1230 1231 Synopsis: 1232 #include <petscmat.h> 1233 PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 1234 1235 Not Collective 1236 1237 Input Parameters: 1238 + nrows - the number of rows indicated 1239 . rows - the indices of the rows 1240 . ncols - the number of columns in the matrix 1241 . cols - the columns indicated 1242 . dnz - the array that will be passed to the matrix preallocation routines 1243 - onz - the other array passed to the matrix preallocation routines 1244 1245 Level: deprecated (since v3.19) 1246 1247 Notes: 1248 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1249 the use of this routine 1250 1251 Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1252 1253 This is a MACRO not a function because it uses variables declared in MatPreallocateBegin(). 1254 1255 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`, 1256 `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()` 1257 M*/ 1258 #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \ 1259 PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \ 1260 if (cols[__i] >= __end) onz[row - __rstart]++; \ 1261 else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \ 1262 }) 1263 1264 /*MC 1265 MatPreallocateLocation - An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists 1266 1267 Synopsis: 1268 #include <petscmat.h> 1269 PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz) 1270 1271 Not Collective 1272 1273 Input Parameters: 1274 + A - matrix 1275 . row - row where values exist (must be local to this process) 1276 . ncols - number of columns 1277 . cols - columns with nonzeros 1278 . dnz - the array that will be passed to the matrix preallocation routines 1279 - onz - the other array passed to the matrix preallocation routines 1280 1281 Level: deprecated (since v3.19) 1282 1283 Notes: 1284 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1285 the use of this routine 1286 1287 Do not malloc or free `dnz` and `onz` that is handled internally by these routines 1288 1289 This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines. 1290 1291 .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1292 `MatPreallocateSymmetricSetLocalBlock()` 1293 M*/ 1294 #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz)) 1295 1296 /*MC 1297 MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per 1298 row in a matrix providing the data that one can use to correctly preallocate the matrix. 1299 1300 Synopsis: 1301 #include <petscmat.h> 1302 PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz) 1303 1304 Collective 1305 1306 Input Parameters: 1307 + dnz - the array that was be passed to the matrix preallocation routines 1308 - onz - the other array passed to the matrix preallocation routines 1309 1310 Level: deprecated (since v3.19) 1311 1312 Notes: 1313 This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than 1314 the use of this routine 1315 1316 Do not malloc or free `dnz` and `onz`, that is handled internally by these routines 1317 1318 Developer Note: 1319 This is a MACRO not a function because it closes the { started in MatPreallocateBegin(). 1320 1321 .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`, 1322 `MatPreallocateSymmetricSetLocalBlock()` 1323 M*/ 1324 #define MatPreallocateEnd(dnz, onz) \ 1325 PetscCall(PetscFree2(dnz, onz)); \ 1326 } \ 1327 while (0) 1328 1329 #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateEnd()", ) MatPreallocateEnd(__VA_ARGS__) 1330 1331 /* Routines unique to particular data structures */ 1332 PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *); 1333 1334 PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *); 1335 PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *); 1336 1337 PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]); 1338 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]); 1339 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1340 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1341 PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *); 1342 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool); 1343 1344 #define MAT_SKIP_ALLOCATION -4 1345 1346 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1347 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1348 PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]); 1349 PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt); 1350 1351 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1352 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1353 PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 1354 PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1355 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1356 PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 1357 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]); 1358 PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]); 1359 PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *); 1360 PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *); 1361 PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]); 1362 PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]); 1363 PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 1364 PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]); 1365 PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *); 1366 1367 PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *); 1368 PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt); 1369 PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatDenseSetLDA()", ) static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda) 1370 { 1371 return MatDenseSetLDA(A, lda); 1372 } 1373 PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *); 1374 1375 PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]); 1376 1377 PETSC_EXTERN PetscErrorCode MatStoreValues(Mat); 1378 PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat); 1379 1380 PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *); 1381 PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *); 1382 /* 1383 These routines are not usually accessed directly, rather solving is 1384 done through the KSP and PC interfaces. 1385 */ 1386 1387 /*J 1388 MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used 1389 to reduce fill in sparse factorizations. 1390 1391 Level: beginner 1392 1393 Notes: 1394 If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one 1395 of its own. 1396 1397 There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()` 1398 1399 Developer Note: 1400 This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning` 1401 1402 .seealso: [](ch_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`, 1403 `PCFactorSetOrderingType()` 1404 J*/ 1405 typedef const char *MatOrderingType; 1406 #define MATORDERINGNATURAL "natural" 1407 #define MATORDERINGND "nd" 1408 #define MATORDERING1WD "1wd" 1409 #define MATORDERINGRCM "rcm" 1410 #define MATORDERINGQMD "qmd" 1411 #define MATORDERINGROWLENGTH "rowlength" 1412 #define MATORDERINGWBM "wbm" 1413 #define MATORDERINGSPECTRAL "spectral" 1414 #define MATORDERINGAMD "amd" /* only works if UMFPACK is installed with PETSc */ 1415 #define MATORDERINGMETISND "metisnd" /* only works if METIS is installed with PETSc */ 1416 #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */ 1417 #define MATORDERINGEXTERNAL "external" /* uses an ordering type internal to the factorization package */ 1418 1419 PETSC_EXTERN PetscErrorCode MatGetOrdering(Mat, MatOrderingType, IS *, IS *); 1420 PETSC_EXTERN PetscErrorCode MatGetOrderingList(PetscFunctionList *); 1421 PETSC_EXTERN PetscErrorCode MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *)); 1422 PETSC_EXTERN PetscFunctionList MatOrderingList; 1423 1424 #include "petscmatcoarsen.h" 1425 1426 PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS); 1427 PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *); 1428 1429 PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *); 1430 1431 /*S 1432 MatFactorShiftType - Type of numeric shift used for factorizations 1433 1434 Values: 1435 + `MAT_SHIFT_NONE` - do not shift the matrix diagonal entries 1436 . `MAT_SHIFT_NONZERO` - shift the entries to be non-zero 1437 . `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite 1438 - `MAT_SHIFT_INBLOCKS` - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ` 1439 1440 Level: intermediate 1441 1442 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()` 1443 S*/ 1444 typedef enum { 1445 MAT_SHIFT_NONE, 1446 MAT_SHIFT_NONZERO, 1447 MAT_SHIFT_POSITIVE_DEFINITE, 1448 MAT_SHIFT_INBLOCKS 1449 } MatFactorShiftType; 1450 PETSC_EXTERN const char *const MatFactorShiftTypes[]; 1451 PETSC_EXTERN const char *const MatFactorShiftTypesDetail[]; 1452 1453 /*S 1454 MatFactorError - indicates what type of error was generated in a matrix factorization 1455 1456 Values: 1457 + `MAT_FACTOR_NOERROR` - there was no error during the factorization 1458 . `MAT_FACTOR_STRUCT_ZEROPIVOT` - there was a missing entry in a diagonal location of the matrix 1459 . `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization 1460 . `MAT_FACTOR_OUTMEMORY` - the factorization has run out of memory 1461 - `MAT_FACTOR_OTHER` - some other error has occurred. 1462 1463 Level: intermediate 1464 1465 Note: 1466 When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason` 1467 1468 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`, 1469 `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason` 1470 S*/ 1471 typedef enum { 1472 MAT_FACTOR_NOERROR, 1473 MAT_FACTOR_STRUCT_ZEROPIVOT, 1474 MAT_FACTOR_NUMERIC_ZEROPIVOT, 1475 MAT_FACTOR_OUTMEMORY, 1476 MAT_FACTOR_OTHER 1477 } MatFactorError; 1478 1479 PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *); 1480 PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat); 1481 PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *); 1482 1483 /*S 1484 MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization 1485 1486 Level: developer 1487 1488 Note: 1489 You can use `MatFactorInfoInitialize()` to set default values. 1490 1491 Fortran Note: 1492 The data is available in a double precision arrays of size `MAT_FACTORINFO_SIZE` 1493 1494 .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, 1495 `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()` 1496 S*/ 1497 typedef struct { 1498 PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */ 1499 PetscReal usedt; 1500 PetscReal dt; /* drop tolerance */ 1501 PetscReal dtcol; /* tolerance for pivoting */ 1502 PetscReal dtcount; /* maximum nonzeros to be allowed per row */ 1503 PetscReal fill; /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */ 1504 PetscReal levels; /* ICC/ILU(levels) */ 1505 PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 1506 factorization may be faster if do not pivot */ 1507 PetscReal zeropivot; /* pivot is called zero if less than this */ 1508 PetscReal shifttype; /* type of shift added to matrix factor to prevent zero pivots */ 1509 PetscReal shiftamount; /* how large the shift is */ 1510 } MatFactorInfo; 1511 1512 PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *); 1513 PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *); 1514 PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 1515 PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *); 1516 PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *); 1517 PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *); 1518 PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 1519 PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *); 1520 PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 1521 PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *); 1522 PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *); 1523 PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *); 1524 PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *); 1525 PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *); 1526 PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *); 1527 PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec); 1528 PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec); 1529 PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec); 1530 PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec); 1531 PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec); 1532 PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec); 1533 PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs); 1534 PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat); 1535 1536 typedef enum { 1537 MAT_FACTOR_SCHUR_UNFACTORED, 1538 MAT_FACTOR_SCHUR_FACTORED, 1539 MAT_FACTOR_SCHUR_INVERTED 1540 } MatFactorSchurStatus; 1541 PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS); 1542 PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 1543 PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus); 1544 PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat); 1545 PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *); 1546 PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec); 1547 PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec); 1548 PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat); 1549 1550 PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat); 1551 /*E 1552 MatSORType - What type of (S)SOR to perform 1553 1554 Values: 1555 + `SOR_FORWARD_SWEEP` - do a sweep from the first row of the matrix to the last 1556 . `SOR_BACKWARD_SWEEP` - do a sweep from the last row to the first 1557 . `SOR_SYMMETRIC_SWEEP` - do a sweep from the first row to the last and then back to the first 1558 . `SOR_LOCAL_FORWARD_SWEEP` - each MPI rank does its own forward sweep with no communication 1559 . `SOR_LOCAL_BACKWARD_SWEEP` - each MPI rank does its own backward sweep with no communication 1560 . `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI rank does its own symmetric sweep with no communication 1561 . `SOR_ZERO_INITIAL_GUESS` - indicates the initial solution is zero so the sweep can avoid unneeded computation 1562 . `SOR_EISENSTAT` - apply the Eisentat application of SOR, see `PCEISENSTAT` 1563 . `SOR_APPLY_UPPER` - multiply by the upper triangular portion of the matrix 1564 - `SOR_APPLY_LOWER` - multiply by the lower triangular portion of the matrix 1565 1566 Level: beginner 1567 1568 Note: 1569 These may be bitwise ORd together 1570 1571 Developer Note: 1572 Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below 1573 1574 .seealso: [](ch_matrices), `MatSOR()` 1575 E*/ 1576 typedef enum { 1577 SOR_FORWARD_SWEEP = 1, 1578 SOR_BACKWARD_SWEEP = 2, 1579 SOR_SYMMETRIC_SWEEP = 3, 1580 SOR_LOCAL_FORWARD_SWEEP = 4, 1581 SOR_LOCAL_BACKWARD_SWEEP = 8, 1582 SOR_LOCAL_SYMMETRIC_SWEEP = 12, 1583 SOR_ZERO_INITIAL_GUESS = 16, 1584 SOR_EISENSTAT = 32, 1585 SOR_APPLY_UPPER = 64, 1586 SOR_APPLY_LOWER = 128 1587 } MatSORType; 1588 PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec); 1589 1590 /*S 1591 MatColoring - Object for managing the coloring of matrices. 1592 1593 Level: beginner 1594 1595 Notes: 1596 Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 1597 matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors). 1598 1599 Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This 1600 same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices. 1601 1602 .seealso: [](ch_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`, 1603 `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`, 1604 `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen` 1605 S*/ 1606 typedef struct _p_MatColoring *MatColoring; 1607 1608 /*J 1609 MatColoringType - String with the name of a PETSc matrix coloring 1610 1611 Level: beginner 1612 1613 .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring` 1614 J*/ 1615 typedef const char *MatColoringType; 1616 #define MATCOLORINGJP "jp" 1617 #define MATCOLORINGPOWER "power" 1618 #define MATCOLORINGNATURAL "natural" 1619 #define MATCOLORINGSL "sl" 1620 #define MATCOLORINGLF "lf" 1621 #define MATCOLORINGID "id" 1622 #define MATCOLORINGGREEDY "greedy" 1623 1624 /*E 1625 MatColoringWeightType - Type of weight scheme used for the coloring algorithm 1626 1627 Values: 1628 + `MAT_COLORING_RANDOM` - Random weights 1629 . `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering. 1630 - `MAT_COLORING_LF` - Last-first weighting. 1631 1632 Level: intermediate 1633 1634 .seealso: [](ch_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()` 1635 E*/ 1636 typedef enum { 1637 MAT_COLORING_WEIGHT_RANDOM, 1638 MAT_COLORING_WEIGHT_LEXICAL, 1639 MAT_COLORING_WEIGHT_LF, 1640 MAT_COLORING_WEIGHT_SL 1641 } MatColoringWeightType; 1642 1643 PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *); 1644 PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *); 1645 PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *); 1646 PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer); 1647 PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType); 1648 PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring); 1649 PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt); 1650 PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *); 1651 PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt); 1652 PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *); 1653 PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *); 1654 PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring)); 1655 PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *); 1656 PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType); 1657 PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *); 1658 PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm); 1659 PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring); 1660 PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatColoringTest()", ) static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring) 1661 { 1662 return MatColoringTest(matcoloring, iscoloring); 1663 } 1664 PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring); 1665 1666 /*S 1667 MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring 1668 1669 Level: beginner 1670 1671 Notes: 1672 This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()` 1673 1674 The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object 1675 1676 .seealso: [](ch_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()` 1677 S*/ 1678 typedef struct _p_MatFDColoring *MatFDColoring; 1679 1680 PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *); 1681 PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *); 1682 PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer); 1683 PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *); 1684 PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **); 1685 PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal); 1686 PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring); 1687 PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *); 1688 PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec); 1689 PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]); 1690 PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring); 1691 PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt); 1692 PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *); 1693 1694 /*S 1695 MatTransposeColoring - Object for computing a sparse matrix product C=A*B^T via coloring 1696 1697 Level: developer 1698 1699 .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()` 1700 S*/ 1701 typedef struct _p_MatTransposeColoring *MatTransposeColoring; 1702 1703 PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *); 1704 PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat); 1705 PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat); 1706 PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *); 1707 1708 /*S 1709 MatPartitioning - Object for managing the partitioning of a matrix or graph 1710 1711 Level: beginner 1712 1713 Note: 1714 There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations 1715 via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`) 1716 1717 Developers Note: 1718 It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed 1719 1720 .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`, 1721 `MatCoarsenType`, `MatCoarsenType` 1722 S*/ 1723 typedef struct _p_MatPartitioning *MatPartitioning; 1724 1725 /*J 1726 MatPartitioningType - String with the name of a PETSc matrix partitioning 1727 1728 Level: beginner 1729 dm 1730 .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`, 1731 `MatCoarsenType`, `MatCoarsenType` 1732 J*/ 1733 typedef const char *MatPartitioningType; 1734 #define MATPARTITIONINGCURRENT "current" 1735 #define MATPARTITIONINGAVERAGE "average" 1736 #define MATPARTITIONINGSQUARE "square" 1737 #define MATPARTITIONINGPARMETIS "parmetis" 1738 #define MATPARTITIONINGCHACO "chaco" 1739 #define MATPARTITIONINGPARTY "party" 1740 #define MATPARTITIONINGPTSCOTCH "ptscotch" 1741 #define MATPARTITIONINGHIERARCH "hierarch" 1742 1743 PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *); 1744 PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType); 1745 PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt); 1746 PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat); 1747 PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt); 1748 PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]); 1749 PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]); 1750 PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool); 1751 PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *); 1752 PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *); 1753 PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *); 1754 PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS); 1755 PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *); 1756 PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *); 1757 PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning)); 1758 PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer); 1759 PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]); 1760 PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning); 1761 PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *); 1762 1763 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part); 1764 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning); 1765 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *); 1766 1767 typedef enum { 1768 MP_CHACO_MULTILEVEL = 1, 1769 MP_CHACO_SPECTRAL = 2, 1770 MP_CHACO_LINEAR = 4, 1771 MP_CHACO_RANDOM = 5, 1772 MP_CHACO_SCATTERED = 6 1773 } MPChacoGlobalType; 1774 PETSC_EXTERN const char *const MPChacoGlobalTypes[]; 1775 typedef enum { 1776 MP_CHACO_KERNIGHAN = 1, 1777 MP_CHACO_NONE = 2 1778 } MPChacoLocalType; 1779 PETSC_EXTERN const char *const MPChacoLocalTypes[]; 1780 typedef enum { 1781 MP_CHACO_LANCZOS = 0, 1782 MP_CHACO_RQI = 1 1783 } MPChacoEigenType; 1784 PETSC_EXTERN const char *const MPChacoEigenTypes[]; 1785 1786 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType); 1787 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *); 1788 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType); 1789 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *); 1790 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal); 1791 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType); 1792 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *); 1793 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal); 1794 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *); 1795 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt); 1796 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *); 1797 1798 #define MP_PARTY_OPT "opt" 1799 #define MP_PARTY_LIN "lin" 1800 #define MP_PARTY_SCA "sca" 1801 #define MP_PARTY_RAN "ran" 1802 #define MP_PARTY_GBF "gbf" 1803 #define MP_PARTY_GCF "gcf" 1804 #define MP_PARTY_BUB "bub" 1805 #define MP_PARTY_DEF "def" 1806 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *); 1807 #define MP_PARTY_HELPFUL_SETS "hs" 1808 #define MP_PARTY_KERNIGHAN_LIN "kl" 1809 #define MP_PARTY_NONE "no" 1810 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *); 1811 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal); 1812 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool); 1813 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool); 1814 1815 typedef enum { 1816 MP_PTSCOTCH_DEFAULT, 1817 MP_PTSCOTCH_QUALITY, 1818 MP_PTSCOTCH_SPEED, 1819 MP_PTSCOTCH_BALANCE, 1820 MP_PTSCOTCH_SAFETY, 1821 MP_PTSCOTCH_SCALABILITY 1822 } MPPTScotchStrategyType; 1823 PETSC_EXTERN const char *const MPPTScotchStrategyTypes[]; 1824 1825 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal); 1826 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *); 1827 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType); 1828 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *); 1829 1830 /* 1831 * hierarchical partitioning 1832 */ 1833 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *); 1834 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *); 1835 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt); 1836 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt); 1837 1838 PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *); 1839 1840 /* 1841 If you add entries here you must also add them to src/mat/f90-mod/petscmat.h 1842 If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx 1843 */ 1844 typedef enum { 1845 MATOP_SET_VALUES = 0, 1846 MATOP_GET_ROW = 1, 1847 MATOP_RESTORE_ROW = 2, 1848 MATOP_MULT = 3, 1849 MATOP_MULT_ADD = 4, 1850 MATOP_MULT_TRANSPOSE = 5, 1851 MATOP_MULT_TRANSPOSE_ADD = 6, 1852 MATOP_SOLVE = 7, 1853 MATOP_SOLVE_ADD = 8, 1854 MATOP_SOLVE_TRANSPOSE = 9, 1855 MATOP_SOLVE_TRANSPOSE_ADD = 10, 1856 MATOP_LUFACTOR = 11, 1857 MATOP_CHOLESKYFACTOR = 12, 1858 MATOP_SOR = 13, 1859 MATOP_TRANSPOSE = 14, 1860 MATOP_GETINFO = 15, 1861 MATOP_EQUAL = 16, 1862 MATOP_GET_DIAGONAL = 17, 1863 MATOP_DIAGONAL_SCALE = 18, 1864 MATOP_NORM = 19, 1865 MATOP_ASSEMBLY_BEGIN = 20, 1866 MATOP_ASSEMBLY_END = 21, 1867 MATOP_SET_OPTION = 22, 1868 MATOP_ZERO_ENTRIES = 23, 1869 MATOP_ZERO_ROWS = 24, 1870 MATOP_LUFACTOR_SYMBOLIC = 25, 1871 MATOP_LUFACTOR_NUMERIC = 26, 1872 MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27, 1873 MATOP_CHOLESKY_FACTOR_NUMERIC = 28, 1874 MATOP_SETUP = 29, 1875 MATOP_ILUFACTOR_SYMBOLIC = 30, 1876 MATOP_ICCFACTOR_SYMBOLIC = 31, 1877 MATOP_GET_DIAGONAL_BLOCK = 32, 1878 MATOP_SET_INF = 33, 1879 MATOP_DUPLICATE = 34, 1880 MATOP_FORWARD_SOLVE = 35, 1881 MATOP_BACKWARD_SOLVE = 36, 1882 MATOP_ILUFACTOR = 37, 1883 MATOP_ICCFACTOR = 38, 1884 MATOP_AXPY = 39, 1885 MATOP_CREATE_SUBMATRICES = 40, 1886 MATOP_INCREASE_OVERLAP = 41, 1887 MATOP_GET_VALUES = 42, 1888 MATOP_COPY = 43, 1889 MATOP_GET_ROW_MAX = 44, 1890 MATOP_SCALE = 45, 1891 MATOP_SHIFT = 46, 1892 MATOP_DIAGONAL_SET = 47, 1893 MATOP_ZERO_ROWS_COLUMNS = 48, 1894 MATOP_SET_RANDOM = 49, 1895 MATOP_GET_ROW_IJ = 50, 1896 MATOP_RESTORE_ROW_IJ = 51, 1897 MATOP_GET_COLUMN_IJ = 52, 1898 MATOP_RESTORE_COLUMN_IJ = 53, 1899 MATOP_FDCOLORING_CREATE = 54, 1900 MATOP_COLORING_PATCH = 55, 1901 MATOP_SET_UNFACTORED = 56, 1902 MATOP_PERMUTE = 57, 1903 MATOP_SET_VALUES_BLOCKED = 58, 1904 MATOP_CREATE_SUBMATRIX = 59, 1905 MATOP_DESTROY = 60, 1906 MATOP_VIEW = 61, 1907 MATOP_CONVERT_FROM = 62, 1908 /* MATOP_PLACEHOLDER_63=63 */ 1909 MATOP_MATMAT_MULT_SYMBOLIC = 64, 1910 MATOP_MATMAT_MULT_NUMERIC = 65, 1911 MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66, 1912 MATOP_SET_VALUES_LOCAL = 67, 1913 MATOP_ZERO_ROWS_LOCAL = 68, 1914 MATOP_GET_ROW_MAX_ABS = 69, 1915 MATOP_GET_ROW_MIN_ABS = 70, 1916 MATOP_CONVERT = 71, 1917 MATOP_HAS_OPERATION = 72, 1918 /* MATOP_PLACEHOLDER_73=73, */ 1919 MATOP_SET_VALUES_ADIFOR = 74, 1920 MATOP_FD_COLORING_APPLY = 75, 1921 MATOP_SET_FROM_OPTIONS = 76, 1922 /* MATOP_PLACEHOLDER_77=77, */ 1923 /* MATOP_PLACEHOLDER_78=78, */ 1924 MATOP_FIND_ZERO_DIAGONALS = 79, 1925 MATOP_MULT_MULTIPLE = 80, 1926 MATOP_SOLVE_MULTIPLE = 81, 1927 MATOP_GET_INERTIA = 82, 1928 MATOP_LOAD = 83, 1929 MATOP_IS_SYMMETRIC = 84, 1930 MATOP_IS_HERMITIAN = 85, 1931 MATOP_IS_STRUCTURALLY_SYMMETRIC = 86, 1932 MATOP_SET_VALUES_BLOCKEDLOCAL = 87, 1933 MATOP_CREATE_VECS = 88, 1934 /* MATOP_PLACEHOLDER_89=89, */ 1935 MATOP_MAT_MULT_SYMBOLIC = 90, 1936 MATOP_MAT_MULT_NUMERIC = 91, 1937 /* MATOP_PLACEHOLDER_92=92, */ 1938 MATOP_PTAP_SYMBOLIC = 93, 1939 MATOP_PTAP_NUMERIC = 94, 1940 /* MATOP_PLACEHOLDER_95=95, */ 1941 MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96, 1942 MATOP_MAT_TRANSPOSE_MULT_NUMER = 97, 1943 MATOP_BIND_TO_CPU = 98, 1944 MATOP_PRODUCTSETFROMOPTIONS = 99, 1945 MATOP_PRODUCTSYMBOLIC = 100, 1946 MATOP_PRODUCTNUMERIC = 101, 1947 MATOP_CONJUGATE = 102, 1948 MATOP_VIEW_NATIVE = 103, 1949 MATOP_SET_VALUES_ROW = 104, 1950 MATOP_REAL_PART = 105, 1951 MATOP_IMAGINARY_PART = 106, 1952 MATOP_GET_ROW_UPPER_TRIANGULAR = 107, 1953 MATOP_RESTORE_ROW_UPPER_TRIANG = 108, 1954 MATOP_MAT_SOLVE = 109, 1955 MATOP_MAT_SOLVE_TRANSPOSE = 110, 1956 MATOP_GET_ROW_MIN = 111, 1957 MATOP_GET_COLUMN_VECTOR = 112, 1958 MATOP_MISSING_DIAGONAL = 113, 1959 MATOP_GET_SEQ_NONZERO_STRUCTUR = 114, 1960 MATOP_CREATE = 115, 1961 MATOP_GET_GHOSTS = 116, 1962 MATOP_GET_LOCAL_SUB_MATRIX = 117, 1963 MATOP_RESTORE_LOCALSUB_MATRIX = 118, 1964 MATOP_MULT_DIAGONAL_BLOCK = 119, 1965 MATOP_HERMITIAN_TRANSPOSE = 120, 1966 MATOP_MULT_HERMITIAN_TRANSPOSE = 121, 1967 MATOP_MULT_HERMITIAN_TRANS_ADD = 122, 1968 MATOP_GET_MULTI_PROC_BLOCK = 123, 1969 MATOP_FIND_NONZERO_ROWS = 124, 1970 MATOP_GET_COLUMN_NORMS = 125, 1971 MATOP_INVERT_BLOCK_DIAGONAL = 126, 1972 MATOP_INVERT_VBLOCK_DIAGONAL = 127, 1973 MATOP_CREATE_SUB_MATRICES_MPI = 128, 1974 MATOP_SET_VALUES_BATCH = 129, 1975 /* MATOP_PLACEHOLDER_130=130, */ 1976 MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131, 1977 MATOP_TRANSPOSE_MAT_MULT_NUMER = 132, 1978 MATOP_TRANSPOSE_COLORING_CREAT = 133, 1979 MATOP_TRANS_COLORING_APPLY_SPT = 134, 1980 MATOP_TRANS_COLORING_APPLY_DEN = 135, 1981 /* MATOP_PLACEHOLDER_136=136, */ 1982 MATOP_RART_SYMBOLIC = 137, 1983 MATOP_RART_NUMERIC = 138, 1984 MATOP_SET_BLOCK_SIZES = 139, 1985 MATOP_AYPX = 140, 1986 MATOP_RESIDUAL = 141, 1987 MATOP_FDCOLORING_SETUP = 142, 1988 MATOP_FIND_OFFBLOCK_ENTRIES = 143, 1989 MATOP_MPICONCATENATESEQ = 144, 1990 MATOP_DESTROYSUBMATRICES = 145, 1991 MATOP_TRANSPOSE_SOLVE = 146, 1992 MATOP_GET_VALUES_LOCAL = 147 1993 } MatOperation; 1994 PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void)); 1995 PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void)); 1996 PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *); 1997 PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *); 1998 PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatProductClear()", ) static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A) 1999 { 2000 return MatProductClear(A); 2001 } 2002 PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void)); 2003 PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void)); 2004 PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *); 2005 PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *)); 2006 PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType); 2007 PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 2008 PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *); 2009 PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat); 2010 PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType); 2011 PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *); 2012 2013 /* 2014 Codes for matrices stored on disk. By default they are 2015 stored in a universal format. By changing the format with 2016 PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will 2017 be stored in a way natural for the matrix, for example dense matrices 2018 would be stored as dense. Matrices stored this way may only be 2019 read into matrices of the same type. 2020 */ 2021 #define MATRIX_BINARY_FORMAT_DENSE -1 2022 2023 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal); 2024 2025 PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType); 2026 PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 2027 PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool); 2028 PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool); 2029 PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *); 2030 PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *); 2031 PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat); 2032 PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *); 2033 PETSC_EXTERN PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatConvert()", ) PetscErrorCode MatISGetMPIXAIJ(Mat, MatReuse, Mat *); 2034 2035 /*S 2036 MatNullSpace - Object that removes a null space from a vector, i.e. 2037 orthogonalizes the vector to a subspace 2038 2039 Level: advanced 2040 2041 .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()` 2042 S*/ 2043 typedef struct _p_MatNullSpace *MatNullSpace; 2044 2045 PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *); 2046 PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *); 2047 PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *); 2048 PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec); 2049 PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *); 2050 PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *); 2051 PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace); 2052 PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace); 2053 PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace); 2054 PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *); 2055 PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *); 2056 PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer); 2057 PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **); 2058 PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *); 2059 2060 PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS); 2061 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal); 2062 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *); 2063 2064 PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *); 2065 PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *); 2066 PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *); 2067 2068 PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *); 2069 PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *); 2070 2071 PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperator()", ) static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B) 2072 { 2073 return MatComputeOperator(A, PETSC_NULLPTR, B); 2074 } 2075 PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperatorTranspose()", ) static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B) 2076 { 2077 return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B); 2078 } 2079 2080 PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *); 2081 PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *); 2082 PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **); 2083 PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2084 PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **); 2085 PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **); 2086 PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **); 2087 PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **); 2088 PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **); 2089 PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **); 2090 PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat); 2091 PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]); 2092 PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]); 2093 PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *); 2094 2095 PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec); 2096 2097 PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2098 PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec); 2099 PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *); 2100 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *)); 2101 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec)); 2102 PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt); 2103 PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat); 2104 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal); 2105 PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt); 2106 PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *); 2107 PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]); 2108 PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *); 2109 PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *); 2110 2111 /*S 2112 MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free 2113 Jacobian vector products 2114 2115 Level: developer 2116 2117 Notes: 2118 `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure 2119 2120 MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure 2121 2122 This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator` 2123 2124 .seealso: [](ch_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`, 2125 `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator` 2126 S*/ 2127 typedef struct _p_MatMFFD *MatMFFD; 2128 2129 /*J 2130 MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function 2131 2132 Values: 2133 + `MATMFFD_DS` - an algorithm described by Dennis and Schnabel 2134 - `MATMFFD_WP` - the Walker-Pernice strategy. 2135 2136 Level: beginner 2137 2138 .seealso: [](ch_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()` 2139 J*/ 2140 typedef const char *MatMFFDType; 2141 #define MATMFFD_DS "ds" 2142 #define MATMFFD_WP "wp" 2143 2144 PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType); 2145 PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD)); 2146 2147 PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal); 2148 PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool); 2149 2150 PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType); 2151 2152 PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *); 2153 PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *); 2154 2155 #ifdef PETSC_HAVE_H2OPUS 2156 PETSC_EXTERN_TYPEDEF typedef PetscScalar (*MatH2OpusKernel)(PetscInt, PetscReal[], PetscReal[], void *); 2157 PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernel, void *, PetscReal, PetscInt, PetscInt, Mat *); 2158 PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *); 2159 PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal); 2160 PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat); 2161 PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal); 2162 PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool); 2163 PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *); 2164 PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *); 2165 PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *); 2166 PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar); 2167 #endif 2168 2169 #ifdef PETSC_HAVE_HTOOL 2170 PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatHtoolKernel)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *); 2171 PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernel, void *, Mat *); 2172 PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernel, void *); 2173 PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *); 2174 PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *); 2175 PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool); 2176 2177 /*E 2178 MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL` 2179 2180 Values: 2181 + `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation 2182 . `MAT_HTOOL_COMPRESSOR_FULL_ACA` - full adaptive cross approximation 2183 - `MAT_HTOOL_COMPRESSOR_SVD` - singular value decomposition 2184 2185 Level: intermediate 2186 2187 .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType` 2188 E*/ 2189 typedef enum { 2190 MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA, 2191 MAT_HTOOL_COMPRESSOR_FULL_ACA, 2192 MAT_HTOOL_COMPRESSOR_SVD 2193 } MatHtoolCompressorType; 2194 2195 /*E 2196 MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL` 2197 2198 Values: 2199 + `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default) - axis computed via principle component analysis, split uniformly 2200 . `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC` - axis computed via principle component analysis, split barycentrically 2201 . `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR` - axis along the largest extent of the bounding box, split uniformly 2202 - `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically 2203 2204 Level: intermediate 2205 2206 Note: 2207 Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types 2208 2209 .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType` 2210 E*/ 2211 typedef enum { 2212 MAT_HTOOL_CLUSTERING_PCA_REGULAR, 2213 MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC, 2214 MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR, 2215 MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC 2216 } MatHtoolClusteringType; 2217 #endif 2218 2219 #ifdef PETSC_HAVE_MUMPS 2220 PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt); 2221 PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *); 2222 PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal); 2223 PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *); 2224 2225 PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *); 2226 PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *); 2227 PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *); 2228 PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *); 2229 PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **); 2230 PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat); 2231 PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat); 2232 #endif 2233 2234 #ifdef PETSC_HAVE_MKL_PARDISO 2235 PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt); 2236 #endif 2237 2238 #ifdef PETSC_HAVE_MKL_CPARDISO 2239 PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt); 2240 #endif 2241 2242 #ifdef PETSC_HAVE_SUPERLU 2243 PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal); 2244 #endif 2245 2246 #ifdef PETSC_HAVE_SUPERLU_DIST 2247 PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *); 2248 #endif 2249 2250 #ifdef PETSC_HAVE_STRUMPACK 2251 /*E 2252 MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK`` 2253 2254 Values: 2255 + `MAT_STRUMPACK_NATURAL` - use the current ordering 2256 . `MAT_STRUMPACK_METIS` - use MeTis to compute an ordering 2257 . `MAT_STRUMPACK_PARMETIS` - use ParMeTis to compute an ordering 2258 . `MAT_STRUMPACK_SCOTCH` - use Scotch to compute an ordering 2259 . `MAT_STRUMPACK_PTSCOTCH` - use parallel Scotch to compute an ordering 2260 - `MAT_STRUMPACK_RCM` - use an RCM ordering 2261 2262 Level: intermediate 2263 2264 Developer Note: 2265 Should be called `MatSTRUMPACKReorderingType` 2266 2267 .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetHSSRelTol()`, `MatSTRUMPACKSetReordering()` 2268 E*/ 2269 typedef enum { 2270 MAT_STRUMPACK_NATURAL = 0, 2271 MAT_STRUMPACK_METIS = 1, 2272 MAT_STRUMPACK_PARMETIS = 2, 2273 MAT_STRUMPACK_SCOTCH = 3, 2274 MAT_STRUMPACK_PTSCOTCH = 4, 2275 MAT_STRUMPACK_RCM = 5 2276 } MatSTRUMPACKReordering; 2277 2278 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering); 2279 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool); 2280 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSRelTol(Mat, PetscReal); 2281 PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSTRUMPACKSetHSSRelTol()", ) static inline PetscErrorCode MatSTRUMPACKSetHSSRelCompTol(Mat mat, PetscReal rtol) 2282 { 2283 return MatSTRUMPACKSetHSSRelTol(mat, rtol); 2284 } 2285 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSAbsTol(Mat, PetscReal); 2286 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMinSepSize(Mat, PetscInt); 2287 PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSTRUMPACKSetHSSMinSepSize()", ) static inline PetscErrorCode MatSTRUMPACKSetHSSMinSize(Mat mat, PetscInt hssminsize) 2288 { 2289 return MatSTRUMPACKSetHSSMinSepSize(mat, hssminsize); 2290 } 2291 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMaxRank(Mat, PetscInt); 2292 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSLeafSize(Mat, PetscInt); 2293 #endif 2294 2295 PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool); 2296 PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *); 2297 PETSC_DEPRECATED_FUNCTION(3, 13, 0, "MatBindToCPU()", ) static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg) 2298 { 2299 return MatBindToCPU(A, flg); 2300 } 2301 PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool); 2302 PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *); 2303 2304 #ifdef PETSC_HAVE_CUDA 2305 /*E 2306 MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU) 2307 matrices. 2308 2309 Values: 2310 + `MAT_CUSPARSE_CSR` - Compressed Sparse Row 2311 . `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later). 2312 - `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later). 2313 2314 Level: intermediate 2315 2316 .seealso: [](ch_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation` 2317 E*/ 2318 2319 typedef enum { 2320 MAT_CUSPARSE_CSR, 2321 MAT_CUSPARSE_ELL, 2322 MAT_CUSPARSE_HYB 2323 } MatCUSPARSEStorageFormat; 2324 2325 /* these will be strings associated with enumerated type defined above */ 2326 PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[]; 2327 2328 /*E 2329 MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU) 2330 matrices whose operation should use a particular storage format. 2331 2332 Values: 2333 + `MAT_CUSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel MatMult 2334 . `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel MatMult 2335 . `MAT_CUSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) MatMult 2336 - `MAT_CUSPARSE_ALL` - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices 2337 2338 Level: intermediate 2339 2340 .seealso: [](ch_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat` 2341 E*/ 2342 typedef enum { 2343 MAT_CUSPARSE_MULT_DIAG, 2344 MAT_CUSPARSE_MULT_OFFDIAG, 2345 MAT_CUSPARSE_MULT, 2346 MAT_CUSPARSE_ALL 2347 } MatCUSPARSEFormatOperation; 2348 2349 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2350 PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2351 PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat); 2352 PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool); 2353 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 2354 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 2355 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **); 2356 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **); 2357 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **); 2358 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **); 2359 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **); 2360 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **); 2361 2362 PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 2363 PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 2364 PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **); 2365 PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **); 2366 PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **); 2367 PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **); 2368 PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **); 2369 PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **); 2370 PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *); 2371 PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *); 2372 PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat); 2373 PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *); 2374 2375 PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2376 PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2377 #endif 2378 2379 #ifdef PETSC_HAVE_HIP 2380 /*E 2381 MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU) 2382 matrices. 2383 2384 Values: 2385 + `MAT_HIPSPARSE_CSR` - Compressed Sparse Row 2386 . `MAT_HIPSPARSE_ELL` - Ellpack 2387 - `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format 2388 2389 Level: intermediate 2390 2391 .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation` 2392 E*/ 2393 2394 typedef enum { 2395 MAT_HIPSPARSE_CSR, 2396 MAT_HIPSPARSE_ELL, 2397 MAT_HIPSPARSE_HYB 2398 } MatHIPSPARSEStorageFormat; 2399 2400 /* these will be strings associated with enumerated type defined above */ 2401 PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[]; 2402 2403 /*E 2404 MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU) 2405 matrices whose operation should use a particular storage format. 2406 2407 Values: 2408 + `MAT_HIPSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()` 2409 . `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel `MatMult()` 2410 . `MAT_HIPSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()` 2411 - `MAT_HIPSPARSE_ALL` - sets the storage format for all HIPSPARSE (GPU) matrices 2412 2413 Level: intermediate 2414 2415 .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat` 2416 E*/ 2417 typedef enum { 2418 MAT_HIPSPARSE_MULT_DIAG, 2419 MAT_HIPSPARSE_MULT_OFFDIAG, 2420 MAT_HIPSPARSE_MULT, 2421 MAT_HIPSPARSE_ALL 2422 } MatHIPSPARSEFormatOperation; 2423 2424 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2425 PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2426 PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat); 2427 PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool); 2428 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **); 2429 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **); 2430 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **); 2431 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **); 2432 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **); 2433 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **); 2434 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **); 2435 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **); 2436 2437 PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *); 2438 PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *); 2439 PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **); 2440 PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **); 2441 PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **); 2442 PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **); 2443 PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **); 2444 PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **); 2445 PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *); 2446 PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *); 2447 PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat); 2448 PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *); 2449 #endif 2450 2451 #if defined(PETSC_HAVE_VIENNACL) 2452 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *); 2453 PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *); 2454 #endif 2455 2456 #if defined(PETSC_HAVE_FFTW) 2457 PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec); 2458 PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec); 2459 PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *); 2460 #endif 2461 2462 #if defined(PETSC_HAVE_SCALAPACK) 2463 PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *); 2464 PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt); 2465 PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *); 2466 #endif 2467 2468 PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *); 2469 PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *); 2470 PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]); 2471 PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]); 2472 PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***); 2473 PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *); 2474 PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType); 2475 PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]); 2476 PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat); 2477 2478 PETSC_EXTERN PetscErrorCode MatFilter(Mat, PetscReal, PetscBool, PetscBool); 2479 PETSC_DEPRECATED_FUNCTION(3, 20, 0, "MatFilter()", ) static inline PetscErrorCode MatChop(Mat A, PetscReal tol) 2480 { 2481 return MatFilter(A, tol, PETSC_FALSE, PETSC_FALSE); 2482 } 2483 PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *); 2484 2485 PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **); 2486 2487 PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat); 2488 2489 PETSC_INTERN PetscErrorCode MatHeaderMerge(Mat, Mat *); 2490 PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *); 2491 2492 PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *); 2493 2494 PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, Mat *); 2495 PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat, PetscBool); 2496 2497 PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *); 2498 #endif 2499