xref: /petsc/include/petscmat.h (revision aa01dc313250c289ddbd427cc758aee6938a2547)
1 /*
2      Include file for the matrix component of PETSc
3 */
4 #ifndef PETSCMAT_H
5 #define PETSCMAT_H
6 
7 #include <petscvec.h>
8 
9 /* SUBMANSEC = Mat */
10 
11 /*S
12      Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without
13            an explicit sparse representation (such as matrix-free operators)
14 
15    Level: beginner
16 
17    Note:
18    See [](doc_matrix), [](ch_matrices) and `MatType` for available matrix types
19 
20 .seealso: [](doc_matrix), [](ch_matrices), `MatCreate()`, `MatType`, `MatSetType()`, `MatDestroy()`
21 S*/
22 typedef struct _p_Mat *Mat;
23 
24 /*J
25     MatType - String with the name of a PETSc matrix type
26 
27    Level: beginner
28 
29    Note:
30    [](doc_matrix) for a table of available matrix types
31 
32 .seealso: [](doc_matrix), [](ch_matrices), `MatSetType()`, `Mat`, `MatSolverType`, `MatRegister()`
33 J*/
34 typedef const char *MatType;
35 #define MATSAME                      "same"
36 #define MATMAIJ                      "maij"
37 #define MATSEQMAIJ                   "seqmaij"
38 #define MATMPIMAIJ                   "mpimaij"
39 #define MATKAIJ                      "kaij"
40 #define MATSEQKAIJ                   "seqkaij"
41 #define MATMPIKAIJ                   "mpikaij"
42 #define MATIS                        "is"
43 #define MATAIJ                       "aij"
44 #define MATSEQAIJ                    "seqaij"
45 #define MATMPIAIJ                    "mpiaij"
46 #define MATAIJCRL                    "aijcrl"
47 #define MATSEQAIJCRL                 "seqaijcrl"
48 #define MATMPIAIJCRL                 "mpiaijcrl"
49 #define MATAIJCUSPARSE               "aijcusparse"
50 #define MATSEQAIJCUSPARSE            "seqaijcusparse"
51 #define MATMPIAIJCUSPARSE            "mpiaijcusparse"
52 #define MATAIJHIPSPARSE              "aijhipsparse"
53 #define MATSEQAIJHIPSPARSE           "seqaijhipsparse"
54 #define MATMPIAIJHIPSPARSE           "mpiaijhipsparse"
55 #define MATAIJKOKKOS                 "aijkokkos"
56 #define MATSEQAIJKOKKOS              "seqaijkokkos"
57 #define MATMPIAIJKOKKOS              "mpiaijkokkos"
58 #define MATAIJVIENNACL               "aijviennacl"
59 #define MATSEQAIJVIENNACL            "seqaijviennacl"
60 #define MATMPIAIJVIENNACL            "mpiaijviennacl"
61 #define MATAIJPERM                   "aijperm"
62 #define MATSEQAIJPERM                "seqaijperm"
63 #define MATMPIAIJPERM                "mpiaijperm"
64 #define MATAIJSELL                   "aijsell"
65 #define MATSEQAIJSELL                "seqaijsell"
66 #define MATMPIAIJSELL                "mpiaijsell"
67 #define MATAIJMKL                    "aijmkl"
68 #define MATSEQAIJMKL                 "seqaijmkl"
69 #define MATMPIAIJMKL                 "mpiaijmkl"
70 #define MATBAIJMKL                   "baijmkl"
71 #define MATSEQBAIJMKL                "seqbaijmkl"
72 #define MATMPIBAIJMKL                "mpibaijmkl"
73 #define MATSHELL                     "shell"
74 #define MATCENTERING                 "centering"
75 #define MATDENSE                     "dense"
76 #define MATDENSECUDA                 "densecuda"
77 #define MATDENSEHIP                  "densehip"
78 #define MATSEQDENSE                  "seqdense"
79 #define MATSEQDENSECUDA              "seqdensecuda"
80 #define MATSEQDENSEHIP               "seqdensehip"
81 #define MATMPIDENSE                  "mpidense"
82 #define MATMPIDENSECUDA              "mpidensecuda"
83 #define MATMPIDENSEHIP               "mpidensehip"
84 #define MATELEMENTAL                 "elemental"
85 #define MATSCALAPACK                 "scalapack"
86 #define MATBAIJ                      "baij"
87 #define MATSEQBAIJ                   "seqbaij"
88 #define MATMPIBAIJ                   "mpibaij"
89 #define MATMPIADJ                    "mpiadj"
90 #define MATSBAIJ                     "sbaij"
91 #define MATSEQSBAIJ                  "seqsbaij"
92 #define MATMPISBAIJ                  "mpisbaij"
93 #define MATMFFD                      "mffd"
94 #define MATNORMAL                    "normal"
95 #define MATNORMALHERMITIAN           "normalh"
96 #define MATLRC                       "lrc"
97 #define MATSCATTER                   "scatter"
98 #define MATBLOCKMAT                  "blockmat"
99 #define MATCOMPOSITE                 "composite"
100 #define MATFFT                       "fft"
101 #define MATFFTW                      "fftw"
102 #define MATSEQCUFFT                  "seqcufft"
103 #define MATSEQHIPFFT                 "seqhipfft"
104 #define MATTRANSPOSEMAT              PETSC_DEPRECATED_MACRO(3, 18, 0, "MATTRANSPOSEVIRTUAL", ) "transpose"
105 #define MATTRANSPOSEVIRTUAL          "transpose"
106 #define MATHERMITIANTRANSPOSEVIRTUAL "hermitiantranspose"
107 #define MATSCHURCOMPLEMENT           "schurcomplement"
108 #define MATPYTHON                    "python"
109 #define MATHYPRE                     "hypre"
110 #define MATHYPRESTRUCT               "hyprestruct"
111 #define MATHYPRESSTRUCT              "hypresstruct"
112 #define MATSUBMATRIX                 "submatrix"
113 #define MATLOCALREF                  "localref"
114 #define MATNEST                      "nest"
115 #define MATPREALLOCATOR              "preallocator"
116 #define MATSELL                      "sell"
117 #define MATSEQSELL                   "seqsell"
118 #define MATMPISELL                   "mpisell"
119 #define MATSELLCUDA                  "sellcuda"
120 #define MATSEQSELLCUDA               "seqsellcuda"
121 #define MATMPISELLCUDA               "mpisellcuda"
122 #define MATDUMMY                     "dummy"
123 #define MATLMVM                      "lmvm"
124 #define MATLMVMDFP                   "lmvmdfp"
125 #define MATLMVMBFGS                  "lmvmbfgs"
126 #define MATLMVMSR1                   "lmvmsr1"
127 #define MATLMVMBROYDEN               "lmvmbroyden"
128 #define MATLMVMBADBROYDEN            "lmvmbadbroyden"
129 #define MATLMVMSYMBROYDEN            "lmvmsymbroyden"
130 #define MATLMVMSYMBADBROYDEN         "lmvmsymbadbroyden"
131 #define MATLMVMDIAGBROYDEN           "lmvmdiagbroyden"
132 #define MATCONSTANTDIAGONAL          "constantdiagonal"
133 #define MATDIAGONAL                  "diagonal"
134 #define MATHTOOL                     "htool"
135 #define MATH2OPUS                    "h2opus"
136 
137 /*J
138     MatSolverType - String with the name of a PETSc factorization based matrix solver type.
139 
140     For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc
141 
142    Level: beginner
143 
144    Note:
145    `MATSOLVERUMFPACK`, `MATSOLVERCHOLMOD`, `MATSOLVERKLU`, `MATSOLVERSPQR` form the SuiteSparse package; you can use `--download-suitesparse` as
146    a ./configure option to install them
147 
148 .seealso: [](sec_matfactor), [](ch_matrices), `MatGetFactor()`, `PCFactorSetMatSolverType()`, `PCFactorGetMatSolverType()`
149 J*/
150 typedef const char *MatSolverType;
151 #define MATSOLVERSUPERLU      "superlu"
152 #define MATSOLVERSUPERLU_DIST "superlu_dist"
153 #define MATSOLVERSTRUMPACK    "strumpack"
154 #define MATSOLVERUMFPACK      "umfpack"
155 #define MATSOLVERCHOLMOD      "cholmod"
156 #define MATSOLVERKLU          "klu"
157 #define MATSOLVERELEMENTAL    "elemental"
158 #define MATSOLVERSCALAPACK    "scalapack"
159 #define MATSOLVERESSL         "essl"
160 #define MATSOLVERLUSOL        "lusol"
161 #define MATSOLVERMUMPS        "mumps"
162 #define MATSOLVERMKL_PARDISO  "mkl_pardiso"
163 #define MATSOLVERMKL_CPARDISO "mkl_cpardiso"
164 #define MATSOLVERPASTIX       "pastix"
165 #define MATSOLVERMATLAB       "matlab"
166 #define MATSOLVERPETSC        "petsc"
167 #define MATSOLVERBAS          "bas"
168 #define MATSOLVERCUSPARSE     "cusparse"
169 #define MATSOLVERCUDA         "cuda"
170 #define MATSOLVERHIPSPARSE    "hipsparse"
171 #define MATSOLVERHIP          "hip"
172 #define MATSOLVERKOKKOS       "kokkos"
173 #define MATSOLVERSPQR         "spqr"
174 
175 /*E
176     MatFactorType - indicates what type of factorization is requested
177 
178     Values:
179 +  `MAT_FACTOR_LU` - LU factorization
180 .  `MAT_FACTOR_CHOLESKY` - Cholesky factorization
181 .  `MAT_FACTOR_ILU` - ILU factorization
182 .  `MAT_FACTOR_ICC` - incomplete Cholesky factorization
183 .  `MAT_FACTOR_ILUDT` - ILU factorization with drop tolerance
184 -  `MAT_FACTOR_QR` - QR factorization
185 
186     Level: beginner
187 
188 .seealso: [](ch_matrices), `MatSolverType`, `MatGetFactor()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()`
189 E*/
190 typedef enum {
191   MAT_FACTOR_NONE,
192   MAT_FACTOR_LU,
193   MAT_FACTOR_CHOLESKY,
194   MAT_FACTOR_ILU,
195   MAT_FACTOR_ICC,
196   MAT_FACTOR_ILUDT,
197   MAT_FACTOR_QR,
198   MAT_FACTOR_NUM_TYPES
199 } MatFactorType;
200 PETSC_EXTERN const char *const MatFactorTypes[];
201 
202 PETSC_EXTERN PetscErrorCode MatGetFactor(Mat, MatSolverType, MatFactorType, Mat *);
203 PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat, MatSolverType, MatFactorType, PetscBool *);
204 PETSC_EXTERN PetscErrorCode MatFactorGetCanUseOrdering(Mat, PetscBool *);
205 PETSC_DEPRECATED_FUNCTION(3, 15, 0, "MatFactorGetCanUseOrdering()", ) static inline PetscErrorCode MatFactorGetUseOrdering(Mat A, PetscBool *b)
206 {
207   return MatFactorGetCanUseOrdering(A, b);
208 }
209 PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat, MatSolverType *);
210 PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat, MatFactorType *);
211 PETSC_EXTERN PetscErrorCode MatSetFactorType(Mat, MatFactorType);
212 PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatSolverFunction)(Mat, MatFactorType, Mat *);
213 PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType, MatType, MatFactorType, MatSolverFunction);
214 PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType, MatType, MatFactorType, PetscBool *, PetscBool *, MatSolverFunction *);
215 typedef MatSolverType       MatSolverPackage PETSC_DEPRECATED_TYPEDEF(3, 9, 0, "MatSolverType", );
216 PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeRegister()", ) static inline PetscErrorCode MatSolverPackageRegister(MatSolverType stype, MatType mtype, MatFactorType ftype, MatSolverFunction f)
217 {
218   return MatSolverTypeRegister(stype, mtype, ftype, f);
219 }
220 PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSolverTypeGet()", ) static inline PetscErrorCode MatSolverPackageGet(MatSolverType stype, MatType mtype, MatFactorType ftype, PetscBool *foundmtype, PetscBool *foundstype, MatSolverFunction *f)
221 {
222   return MatSolverTypeGet(stype, mtype, ftype, foundmtype, foundstype, f);
223 }
224 
225 /*E
226     MatProductType - indicates what type of matrix product is requested
227 
228     Values:
229 +  `MATPRODUCT_AB` - product of two matrices
230 .  `MATPRODUCT_AtB` - product of the transpose of a given matrix with a matrix
231 .  `MATPRODUCT_ABt` - product of a matrix with the transpose of another given matrix
232 .  `MATPRODUCT_PtAP` - the triple product of the transpose of a matrix with another matrix and itself
233 .  `MATPRODUCT_RARt` - the triple product of a matrix, another matrix and the transpose of the first matrix
234 -  `MATPRODUCT_ABC` - the product of three matrices
235 
236     Level: beginner
237 
238 .seealso: [](sec_matmatproduct), [](ch_matrices), `MatProductSetType()`
239 E*/
240 typedef enum {
241   MATPRODUCT_UNSPECIFIED = 0,
242   MATPRODUCT_AB,
243   MATPRODUCT_AtB,
244   MATPRODUCT_ABt,
245   MATPRODUCT_PtAP,
246   MATPRODUCT_RARt,
247   MATPRODUCT_ABC
248 } MatProductType;
249 PETSC_EXTERN const char *const MatProductTypes[];
250 
251 /*J
252     MatProductAlgorithm - String with the name of an algorithm for a PETSc matrix product implementation
253 
254    Level: beginner
255 
256 .seealso: [](sec_matmatproduct), [](ch_matrices), `MatSetType()`, `Mat`, `MatProductSetAlgorithm()`, `MatProductType`
257 J*/
258 typedef const char *MatProductAlgorithm;
259 #define MATPRODUCTALGORITHMDEFAULT         "default"
260 #define MATPRODUCTALGORITHMSORTED          "sorted"
261 #define MATPRODUCTALGORITHMSCALABLE        "scalable"
262 #define MATPRODUCTALGORITHMSCALABLEFAST    "scalable_fast"
263 #define MATPRODUCTALGORITHMHEAP            "heap"
264 #define MATPRODUCTALGORITHMBHEAP           "btheap"
265 #define MATPRODUCTALGORITHMLLCONDENSED     "llcondensed"
266 #define MATPRODUCTALGORITHMROWMERGE        "rowmerge"
267 #define MATPRODUCTALGORITHMOUTERPRODUCT    "outerproduct"
268 #define MATPRODUCTALGORITHMATB             "at*b"
269 #define MATPRODUCTALGORITHMRAP             "rap"
270 #define MATPRODUCTALGORITHMNONSCALABLE     "nonscalable"
271 #define MATPRODUCTALGORITHMSEQMPI          "seqmpi"
272 #define MATPRODUCTALGORITHMBACKEND         "backend"
273 #define MATPRODUCTALGORITHMOVERLAPPING     "overlapping"
274 #define MATPRODUCTALGORITHMMERGED          "merged"
275 #define MATPRODUCTALGORITHMALLATONCE       "allatonce"
276 #define MATPRODUCTALGORITHMALLATONCEMERGED "allatonce_merged"
277 #define MATPRODUCTALGORITHMALLGATHERV      "allgatherv"
278 #define MATPRODUCTALGORITHMCYCLIC          "cyclic"
279 #if defined(PETSC_HAVE_HYPRE)
280   #define MATPRODUCTALGORITHMHYPRE "hypre"
281 #endif
282 
283 PETSC_EXTERN PetscErrorCode MatProductCreate(Mat, Mat, Mat, Mat *);
284 PETSC_EXTERN PetscErrorCode MatProductCreateWithMat(Mat, Mat, Mat, Mat);
285 PETSC_EXTERN PetscErrorCode MatProductSetType(Mat, MatProductType);
286 PETSC_EXTERN PetscErrorCode MatProductSetAlgorithm(Mat, MatProductAlgorithm);
287 PETSC_EXTERN PetscErrorCode MatProductSetFill(Mat, PetscReal);
288 PETSC_EXTERN PetscErrorCode MatProductSetFromOptions(Mat);
289 PETSC_EXTERN PetscErrorCode MatProductSymbolic(Mat);
290 PETSC_EXTERN PetscErrorCode MatProductNumeric(Mat);
291 PETSC_EXTERN PetscErrorCode MatProductReplaceMats(Mat, Mat, Mat, Mat);
292 PETSC_EXTERN PetscErrorCode MatProductClear(Mat);
293 PETSC_EXTERN PetscErrorCode MatProductView(Mat, PetscViewer);
294 PETSC_EXTERN PetscErrorCode MatProductGetType(Mat, MatProductType *);
295 PETSC_EXTERN PetscErrorCode MatProductGetMats(Mat, Mat *, Mat *, Mat *);
296 
297 /* Logging support */
298 #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */
299 PETSC_EXTERN PetscClassId MAT_CLASSID;
300 PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID;
301 PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID;
302 PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID;
303 PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID;
304 PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID;
305 PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID;
306 PETSC_EXTERN PetscClassId MATMFFD_CLASSID;
307 
308 /*E
309     MatReuse - Indicates if matrices obtained from a previous call to `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatConvert()` or several other functions
310      are to be reused to store the new matrix values.
311 
312    Values:
313 +  `MAT_INITIAL_MATRIX` - create a new matrix
314 .  `MAT_REUSE_MATRIX` - reuse the matrix created with a previous call that used `MAT_INITIAL_MATRIX`
315 .  `MAT_INPLACE_MATRIX` - replace the first input matrix with the new matrix (not applicable to all functions)
316 -  `MAT_IGNORE_MATRIX` - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions)
317 
318     Level: beginner
319 
320 .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatDestroyMatrices()`, `MatConvert()`
321 E*/
322 typedef enum {
323   MAT_INITIAL_MATRIX,
324   MAT_REUSE_MATRIX,
325   MAT_IGNORE_MATRIX,
326   MAT_INPLACE_MATRIX
327 } MatReuse;
328 
329 /*E
330     MatCreateSubMatrixOption - Indicates if matrices obtained from a call to `MatCreateSubMatrices()`
331      include the matrix values. Currently it is only used by `MatGetSeqNonzeroStructure()`.
332 
333     Level: developer
334 
335     Values:
336 +  `MAT_DO_NOT_GET_VALUES` - do not copy the matrix values
337 -  `MAT_GET_VALUES` - copy the matrix values
338 
339     Developer Note:
340     Why is not just a boolean used for this information?
341 
342 .seealso: [](ch_matrices), `Mat`, `MatDuplicateOption`, `PetscCopyMode`, `MatGetSeqNonzeroStructure()`
343 E*/
344 typedef enum {
345   MAT_DO_NOT_GET_VALUES,
346   MAT_GET_VALUES
347 } MatCreateSubMatrixOption;
348 
349 PETSC_EXTERN PetscErrorCode MatInitializePackage(void);
350 
351 PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm, Mat *);
352 PETSC_EXTERN PetscErrorCode MatCreateFromOptions(MPI_Comm, const char *, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
353 PETSC_EXTERN PetscErrorCode MatSetSizes(Mat, PetscInt, PetscInt, PetscInt, PetscInt);
354 PETSC_EXTERN PetscErrorCode MatSetType(Mat, MatType);
355 PETSC_EXTERN PetscErrorCode MatGetVecType(Mat, VecType *);
356 PETSC_EXTERN PetscErrorCode MatSetVecType(Mat, VecType);
357 PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat);
358 PETSC_EXTERN PetscErrorCode MatViewFromOptions(Mat, PetscObject, const char[]);
359 PETSC_EXTERN PetscErrorCode MatRegister(const char[], PetscErrorCode (*)(Mat));
360 PETSC_EXTERN PetscErrorCode MatRegisterRootName(const char[], const char[], const char[]);
361 PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat, const char[]);
362 PETSC_EXTERN PetscErrorCode MatSetOptionsPrefixFactor(Mat, const char[]);
363 PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefixFactor(Mat, const char[]);
364 PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat, const char[]);
365 PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat, const char *[]);
366 PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat, PetscBool);
367 
368 PETSC_EXTERN PetscFunctionList MatList;
369 PETSC_EXTERN PetscFunctionList MatColoringList;
370 PETSC_EXTERN PetscFunctionList MatPartitioningList;
371 
372 /*E
373     MatStructure - Indicates if two matrices have the same nonzero structure
374 
375    Values:
376 +  `SAME_NONZERO_PATTERN`  - the two matrices have identical nonzero patterns
377 .  `DIFFERENT_NONZERO_PATTERN` - the two matrices may have different nonzero patterns
378 .  `SUBSET_NONZERO_PATTERN` - the nonzero pattern of the second matrix is a subset of the nonzero pattern of the first matrix
379 -  `UNKNOWN_NONZERO_PATTERN` - there is no known relationship between the nonzero patterns. In this case the implementations
380                                may try to detect a relationship to optimize the operation
381 
382     Level: beginner
383 
384 .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatAXPY()`, `MatAYPX()`
385 E*/
386 typedef enum {
387   DIFFERENT_NONZERO_PATTERN,
388   SUBSET_NONZERO_PATTERN,
389   SAME_NONZERO_PATTERN,
390   UNKNOWN_NONZERO_PATTERN
391 } MatStructure;
392 PETSC_EXTERN const char *const MatStructures[];
393 
394 #if defined                 PETSC_HAVE_MKL_SPARSE
395 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
396 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
397 PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
398 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
399 #endif
400 
401 PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
402 PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
403 PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat, PetscInt, const PetscInt[]);
404 PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
405 PETSC_EXTERN PetscErrorCode MatSeqSELLGetFillRatio(Mat, PetscReal *);
406 PETSC_EXTERN PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat, PetscInt *);
407 PETSC_EXTERN PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat, PetscReal *);
408 PETSC_EXTERN PetscErrorCode MatSeqSELLSetSliceHeight(Mat, PetscInt);
409 PETSC_EXTERN PetscErrorCode MatSeqSELLGetVarSliceSize(Mat, PetscReal *);
410 
411 PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
412 PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
413 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
414 PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
415 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
416 PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArrays(Mat, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
417 PETSC_EXTERN PetscErrorCode MatUpdateMPIAIJWithArray(Mat, const PetscScalar[]);
418 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], PetscInt[], PetscInt[], PetscScalar[], Mat *);
419 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm, Mat, Mat, const PetscInt[], Mat *);
420 
421 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
422 PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
423 PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
424 
425 PETSC_EXTERN PetscErrorCode MatSetPreallocationCOO(Mat, PetscCount, PetscInt[], PetscInt[]);
426 PETSC_EXTERN PetscErrorCode MatSetPreallocationCOOLocal(Mat, PetscCount, PetscInt[], PetscInt[]);
427 PETSC_EXTERN PetscErrorCode MatSetValuesCOO(Mat, const PetscScalar[], InsertMode);
428 
429 PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscInt[], Mat *);
430 PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
431 
432 PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
433 PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], Mat *);
434 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
435 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
436 PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscInt[], const PetscInt[]);
437 
438 PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, void *, Mat *);
439 PETSC_EXTERN PetscErrorCode MatCreateCentering(MPI_Comm, PetscInt, PetscInt, Mat *);
440 PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat, Mat *);
441 PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat, Mat *);
442 PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat, Mat, Vec, Mat, Mat *);
443 PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat, Mat *, Mat *, Vec *, Mat *);
444 PETSC_EXTERN PetscErrorCode MatLRCSetMats(Mat, Mat, Mat, Vec, Mat);
445 PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, ISLocalToGlobalMapping, ISLocalToGlobalMapping, Mat *);
446 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
447 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
448 
449 PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm, VecScatter, Mat *);
450 PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat, VecScatter);
451 PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat, VecScatter *);
452 PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, Mat *);
453 PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat, Mat);
454 PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat);
455 typedef enum {
456   MAT_COMPOSITE_MERGE_RIGHT,
457   MAT_COMPOSITE_MERGE_LEFT
458 } MatCompositeMergeType;
459 PETSC_EXTERN PetscErrorCode MatCompositeSetMergeType(Mat, MatCompositeMergeType);
460 PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm, PetscInt, const Mat *, Mat *);
461 typedef enum {
462   MAT_COMPOSITE_ADDITIVE,
463   MAT_COMPOSITE_MULTIPLICATIVE
464 } MatCompositeType;
465 PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat, MatCompositeType);
466 PETSC_EXTERN PetscErrorCode MatCompositeGetType(Mat, MatCompositeType *);
467 PETSC_EXTERN PetscErrorCode MatCompositeSetMatStructure(Mat, MatStructure);
468 PETSC_EXTERN PetscErrorCode MatCompositeGetMatStructure(Mat, MatStructure *);
469 PETSC_EXTERN PetscErrorCode MatCompositeGetNumberMat(Mat, PetscInt *);
470 PETSC_EXTERN PetscErrorCode MatCompositeGetMat(Mat, PetscInt, Mat *);
471 PETSC_EXTERN PetscErrorCode MatCompositeSetScalings(Mat, const PetscScalar *);
472 
473 PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm, PetscInt, const PetscInt[], MatType, Mat *);
474 PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm, PetscInt, const PetscInt[], Mat *);
475 
476 PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat, Mat *);
477 PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat, Mat *);
478 PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat, Mat *);
479 PETSC_EXTERN PetscErrorCode MatHermitianTransposeGetMat(Mat, Mat *);
480 PETSC_EXTERN PetscErrorCode MatNormalGetMat(Mat, Mat *);
481 PETSC_EXTERN PetscErrorCode MatNormalHermitianGetMat(Mat, Mat *);
482 PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat, IS, IS, Mat *);
483 PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat, Mat, IS, IS);
484 PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat, IS, IS, Mat *);
485 PETSC_EXTERN PetscErrorCode MatCreateConstantDiagonal(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar, Mat *);
486 PETSC_EXTERN PetscErrorCode MatCreateDiagonal(Vec, Mat *);
487 PETSC_EXTERN PetscErrorCode MatDiagonalGetDiagonal(Mat, Vec *);
488 PETSC_EXTERN PetscErrorCode MatDiagonalRestoreDiagonal(Mat, Vec *);
489 PETSC_EXTERN PetscErrorCode MatDiagonalGetInverseDiagonal(Mat, Vec *);
490 PETSC_EXTERN PetscErrorCode MatDiagonalRestoreInverseDiagonal(Mat, Vec *);
491 
492 #if defined(PETSC_HAVE_HYPRE)
493 PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
494 #endif
495 
496 PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat, const char[]);
497 PETSC_EXTERN PetscErrorCode MatPythonGetType(Mat, const char *[]);
498 
499 PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat);
500 PETSC_EXTERN PetscErrorCode MatSetUp(Mat);
501 PETSC_EXTERN PetscErrorCode MatDestroy(Mat *);
502 PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat, PetscObjectState *);
503 
504 PETSC_EXTERN PetscErrorCode MatConjugate(Mat);
505 PETSC_EXTERN PetscErrorCode MatRealPart(Mat);
506 PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat);
507 PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat, Mat *);
508 PETSC_EXTERN PetscErrorCode MatGetTrace(Mat, PetscScalar *);
509 PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat, const PetscScalar **);
510 PETSC_EXTERN PetscErrorCode MatInvertVariableBlockDiagonal(Mat, PetscInt, const PetscInt *, PetscScalar *);
511 PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat, Mat);
512 PETSC_EXTERN PetscErrorCode MatInvertVariableBlockEnvelope(Mat, MatReuse, Mat *);
513 PETSC_EXTERN PetscErrorCode MatComputeVariableBlockEnvelope(Mat);
514 
515 PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
516 PETSC_EXTERN PetscErrorCode MatSetValuesIS(Mat, IS, IS, const PetscScalar[], InsertMode);
517 PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
518 PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat, PetscInt, const PetscScalar[]);
519 PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat, PetscInt, const PetscScalar[]);
520 PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat, PetscInt, PetscInt, PetscInt[], const PetscScalar[]);
521 PETSC_EXTERN PetscErrorCode MatSetRandom(Mat, PetscRandom);
522 
523 /*S
524      MatStencil - Data structure (C struct) for storing information about rows and
525         columns of a matrix as indexed on an associated grid. These are arguments to `MatSetStencil()` and `MatSetBlockStencil()`
526 
527    Level: beginner
528 
529    Notes:
530    The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored).
531    The c represents the the degrees of freedom at each grid point (the dof argument to `DMDASetDOF()`). If dof is 1 then this entry is ignored.
532 
533    For stencil access to vectors see `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`.
534 
535    For staggered grids, see `DMStagStencil`
536 
537    Fortran Note:
538    See `MatSetValuesStencil()` for details.
539 
540 .seealso: [](ch_matrices), `Mat`, `MatSetValuesStencil()`, `MatSetStencil()`, `MatSetValuesBlockedStencil()`, `DMDAVecGetArray()`, `DMDAVecGetArrayF90()`,
541           `DMStagStencil`
542 S*/
543 typedef struct {
544   PetscInt k, j, i, c;
545 } MatStencil;
546 
547 PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
548 PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat, PetscInt, const MatStencil[], PetscInt, const MatStencil[], const PetscScalar[], InsertMode);
549 PETSC_EXTERN PetscErrorCode MatSetStencil(Mat, PetscInt, const PetscInt[], const PetscInt[], PetscInt);
550 
551 /*E
552     MatAssemblyType - Indicates if the process of setting values into the matrix is complete, and the matrix is ready for use
553 
554     Values:
555 +   `MAT_FLUSH_ASSEMBLY` - you will continue to put values into the matrix
556 -   `MAT_FINAL_ASSEMBLY` - you wish to use the matrix with the values currently inserted
557 
558     Level: beginner
559 
560 .seealso: [](ch_matrices), `Mat`, `MatSetValues`, `MatAssemblyBegin()`, `MatAssemblyEnd()`
561 E*/
562 typedef enum {
563   MAT_FLUSH_ASSEMBLY = 1,
564   MAT_FINAL_ASSEMBLY = 0
565 } MatAssemblyType;
566 PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat, MatAssemblyType);
567 PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat, MatAssemblyType);
568 PETSC_EXTERN PetscErrorCode MatAssembled(Mat, PetscBool *);
569 
570 /*E
571     MatOption - Options that may be set for a matrix that indicate properties of the matrix or affect its behavior or storage
572 
573     Level: beginner
574 
575    Note:
576    See `MatSetOption()` for the use of the options
577 
578    Developer Note:
579    Entries that are negative need not be called collectively by all processes.
580 
581 .seealso: [](ch_matrices), `Mat`, `MatSetOption()`
582 E*/
583 typedef enum {
584   MAT_OPTION_MIN                  = -3,
585   MAT_UNUSED_NONZERO_LOCATION_ERR = -2,
586   MAT_ROW_ORIENTED                = -1,
587   MAT_SYMMETRIC                   = 1,
588   MAT_STRUCTURALLY_SYMMETRIC      = 2,
589   MAT_FORCE_DIAGONAL_ENTRIES      = 3,
590   MAT_IGNORE_OFF_PROC_ENTRIES     = 4,
591   MAT_USE_HASH_TABLE              = 5,
592   MAT_KEEP_NONZERO_PATTERN        = 6,
593   MAT_IGNORE_ZERO_ENTRIES         = 7,
594   MAT_USE_INODES                  = 8,
595   MAT_HERMITIAN                   = 9,
596   MAT_SYMMETRY_ETERNAL            = 10,
597   MAT_NEW_NONZERO_LOCATION_ERR    = 11,
598   MAT_IGNORE_LOWER_TRIANGULAR     = 12,
599   MAT_ERROR_LOWER_TRIANGULAR      = 13,
600   MAT_GETROW_UPPERTRIANGULAR      = 14,
601   MAT_SPD                         = 15,
602   MAT_NO_OFF_PROC_ZERO_ROWS       = 16,
603   MAT_NO_OFF_PROC_ENTRIES         = 17,
604   MAT_NEW_NONZERO_LOCATIONS       = 18,
605   MAT_NEW_NONZERO_ALLOCATION_ERR  = 19,
606   MAT_SUBSET_OFF_PROC_ENTRIES     = 20,
607   MAT_SUBMAT_SINGLEIS             = 21,
608   MAT_STRUCTURE_ONLY              = 22,
609   MAT_SORTED_FULL                 = 23,
610   MAT_FORM_EXPLICIT_TRANSPOSE     = 24,
611   MAT_STRUCTURAL_SYMMETRY_ETERNAL = 25,
612   MAT_SPD_ETERNAL                 = 26,
613   MAT_OPTION_MAX                  = 27
614 } MatOption;
615 
616 PETSC_EXTERN const char *const *MatOptions;
617 PETSC_EXTERN PetscErrorCode     MatSetOption(Mat, MatOption, PetscBool);
618 PETSC_EXTERN PetscErrorCode     MatGetOption(Mat, MatOption, PetscBool *);
619 PETSC_EXTERN PetscErrorCode     MatPropagateSymmetryOptions(Mat, Mat);
620 PETSC_EXTERN PetscErrorCode     MatGetType(Mat, MatType *);
621 
622 PETSC_EXTERN PetscErrorCode    MatGetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
623 PETSC_EXTERN PetscErrorCode    MatGetRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
624 PETSC_EXTERN PetscErrorCode    MatRestoreRow(Mat, PetscInt, PetscInt *, const PetscInt *[], const PetscScalar *[]);
625 PETSC_EXTERN PetscErrorCode    MatGetRowUpperTriangular(Mat);
626 PETSC_EXTERN PetscErrorCode    MatRestoreRowUpperTriangular(Mat);
627 PETSC_EXTERN PetscErrorCode    MatGetColumnVector(Mat, Vec, PetscInt);
628 PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArray(Mat, PetscScalar *[]);
629 PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayRead(Mat, const PetscScalar *[]);
630 PETSC_EXTERN PetscErrorCode    MatSeqAIJGetArrayWrite(Mat, PetscScalar *[]);
631 PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArray(Mat, PetscScalar *[]);
632 PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayRead(Mat, const PetscScalar *[]);
633 PETSC_EXTERN PetscErrorCode    MatSeqAIJRestoreArrayWrite(Mat, PetscScalar *[]);
634 PETSC_EXTERN PetscErrorCode    MatSeqAIJGetMaxRowNonzeros(Mat, PetscInt *);
635 PETSC_EXTERN PetscErrorCode    MatSeqAIJSetValuesLocalFast(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
636 PETSC_EXTERN PetscErrorCode    MatSeqAIJSetType(Mat, MatType);
637 PETSC_EXTERN PetscErrorCode    MatSeqAIJKron(Mat, Mat, MatReuse, Mat *);
638 PETSC_EXTERN PetscErrorCode    MatSeqAIJRegister(const char[], PetscErrorCode (*)(Mat, MatType, MatReuse, Mat *));
639 PETSC_EXTERN PetscFunctionList MatSeqAIJList;
640 PETSC_EXTERN PetscErrorCode    MatSeqBAIJGetArray(Mat, PetscScalar *[]);
641 PETSC_EXTERN PetscErrorCode    MatSeqBAIJRestoreArray(Mat, PetscScalar *[]);
642 PETSC_EXTERN PetscErrorCode    MatSeqSBAIJGetArray(Mat, PetscScalar *[]);
643 PETSC_EXTERN PetscErrorCode    MatSeqSBAIJRestoreArray(Mat, PetscScalar *[]);
644 PETSC_EXTERN PetscErrorCode    MatDenseGetArray(Mat, PetscScalar *[]);
645 PETSC_EXTERN PetscErrorCode    MatDenseRestoreArray(Mat, PetscScalar *[]);
646 PETSC_EXTERN PetscErrorCode    MatDensePlaceArray(Mat, const PetscScalar[]);
647 PETSC_EXTERN PetscErrorCode    MatDenseReplaceArray(Mat, const PetscScalar[]);
648 PETSC_EXTERN PetscErrorCode    MatDenseResetArray(Mat);
649 PETSC_EXTERN PetscErrorCode    MatDenseGetArrayRead(Mat, const PetscScalar *[]);
650 PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayRead(Mat, const PetscScalar *[]);
651 PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWrite(Mat, PetscScalar *[]);
652 PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWrite(Mat, PetscScalar *[]);
653 PETSC_EXTERN PetscErrorCode    MatDenseGetArrayAndMemType(Mat, PetscScalar *[], PetscMemType *);
654 PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayAndMemType(Mat, PetscScalar *[]);
655 PETSC_EXTERN PetscErrorCode    MatDenseGetArrayReadAndMemType(Mat, const PetscScalar *[], PetscMemType *);
656 PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayReadAndMemType(Mat, const PetscScalar *[]);
657 PETSC_EXTERN PetscErrorCode    MatDenseGetArrayWriteAndMemType(Mat, PetscScalar *[], PetscMemType *);
658 PETSC_EXTERN PetscErrorCode    MatDenseRestoreArrayWriteAndMemType(Mat, PetscScalar *[]);
659 PETSC_EXTERN PetscErrorCode    MatGetBlockSize(Mat, PetscInt *);
660 PETSC_EXTERN PetscErrorCode    MatSetBlockSize(Mat, PetscInt);
661 PETSC_EXTERN PetscErrorCode    MatGetBlockSizes(Mat, PetscInt *, PetscInt *);
662 PETSC_EXTERN PetscErrorCode    MatSetBlockSizes(Mat, PetscInt, PetscInt);
663 PETSC_EXTERN PetscErrorCode    MatSetBlockSizesFromMats(Mat, Mat, Mat);
664 PETSC_EXTERN PetscErrorCode    MatSetVariableBlockSizes(Mat, PetscInt, PetscInt *);
665 PETSC_EXTERN PetscErrorCode    MatGetVariableBlockSizes(Mat, PetscInt *, const PetscInt **);
666 
667 PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat, PetscInt, PetscScalar *[]);
668 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat, PetscScalar *[]);
669 PETSC_EXTERN PetscErrorCode MatDenseGetColumnVec(Mat, PetscInt, Vec *);
670 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVec(Mat, PetscInt, Vec *);
671 PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecRead(Mat, PetscInt, Vec *);
672 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecRead(Mat, PetscInt, Vec *);
673 PETSC_EXTERN PetscErrorCode MatDenseGetColumnVecWrite(Mat, PetscInt, Vec *);
674 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumnVecWrite(Mat, PetscInt, Vec *);
675 PETSC_EXTERN PetscErrorCode MatDenseGetSubMatrix(Mat, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
676 PETSC_EXTERN PetscErrorCode MatDenseRestoreSubMatrix(Mat, Mat *);
677 
678 PETSC_EXTERN PetscErrorCode MatMult(Mat, Vec, Vec);
679 PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat, Vec, Vec);
680 PETSC_EXTERN PetscErrorCode MatMultAdd(Mat, Vec, Vec, Vec);
681 PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat, Vec, Vec);
682 PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat, Vec, Vec);
683 PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat, Mat, PetscReal, PetscBool *);
684 PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat, Mat, PetscReal, PetscBool *);
685 PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat, Vec, Vec, Vec);
686 PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat, Vec, Vec, Vec);
687 PETSC_EXTERN PetscErrorCode MatMatSolve(Mat, Mat, Mat);
688 PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat, Mat, Mat);
689 PETSC_EXTERN PetscErrorCode MatMatTransposeSolve(Mat, Mat, Mat);
690 PETSC_EXTERN PetscErrorCode MatResidual(Mat, Vec, Vec, Vec);
691 
692 /*E
693     MatDuplicateOption - Indicates if a duplicated sparse matrix should have
694   its numerical values copied over or just its nonzero structure.
695 
696     Values:
697 +   `MAT_DO_NOT_COPY_VALUES`    - Create a matrix using the same nonzero pattern as the original matrix,
698                                with zeros for the numerical values
699 .   `MAT_COPY_VALUES`           - Create a matrix with the same nonzero pattern as the original matrix
700                                and with the same numerical values.
701 -   `MAT_SHARE_NONZERO_PATTERN` - Create a matrix that shares the nonzero structure with the previous matrix
702                                and does not copy it, using zeros for the numerical values. The parent and
703                                child matrices will share their index (i and j) arrays, and you cannot
704                                insert new nonzero entries into either matrix
705 
706     Level: beginner
707 
708   Note:
709   Many matrix types (including `MATSEQAIJ`) do not support the `MAT_SHARE_NONZERO_PATTERN` optimization; in
710   this case the behavior is as if `MAT_DO_NOT_COPY_VALUES` has been specified.
711 
712 .seealso: [](ch_matrices), `Mat`, `MatDuplicate()`
713 E*/
714 typedef enum {
715   MAT_DO_NOT_COPY_VALUES,
716   MAT_COPY_VALUES,
717   MAT_SHARE_NONZERO_PATTERN
718 } MatDuplicateOption;
719 
720 PETSC_EXTERN PetscErrorCode MatConvert(Mat, MatType, MatReuse, Mat *);
721 PETSC_EXTERN PetscErrorCode MatDuplicate(Mat, MatDuplicateOption, Mat *);
722 
723 PETSC_EXTERN PetscErrorCode MatCopy(Mat, Mat, MatStructure);
724 PETSC_EXTERN PetscErrorCode MatView(Mat, PetscViewer);
725 PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat, PetscReal, PetscBool *);
726 PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat, PetscBool *);
727 PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat, PetscReal, PetscBool *);
728 PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat, PetscBool *, PetscBool *);
729 PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat, PetscBool *, PetscBool *);
730 PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetricKnown(Mat, PetscBool *, PetscBool *);
731 PETSC_EXTERN PetscErrorCode MatIsSPDKnown(Mat, PetscBool *, PetscBool *);
732 PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat, PetscBool *, PetscInt *);
733 PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer);
734 
735 PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
736 PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
737 PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
738 PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat, PetscInt, PetscBool, PetscBool, PetscInt *, const PetscInt *[], const PetscInt *[], PetscBool *);
739 
740 /*S
741      MatInfo - Context of matrix information, used with `MatGetInfo()`
742 
743    Level: intermediate
744 
745    Fortran Note:
746    Information is stored as a double-precision array of dimension `MAT_INFO_SIZE`
747 
748 .seealso: [](ch_matrices), `Mat`, `MatGetInfo()`, `MatInfoType`
749 S*/
750 typedef struct {
751   PetscLogDouble block_size;                          /* block size */
752   PetscLogDouble nz_allocated, nz_used, nz_unneeded;  /* number of nonzeros */
753   PetscLogDouble memory;                              /* memory allocated */
754   PetscLogDouble assemblies;                          /* number of matrix assemblies called */
755   PetscLogDouble mallocs;                             /* number of mallocs during MatSetValues() */
756   PetscLogDouble fill_ratio_given, fill_ratio_needed; /* fill ratio for LU/ILU */
757   PetscLogDouble factor_mallocs;                      /* number of mallocs during factorization */
758 } MatInfo;
759 
760 /*E
761     MatInfoType - Indicates if you want information about the local part of the matrix,
762      the entire parallel matrix or the maximum over all the local parts.
763 
764     Values:
765 +   `MAT_LOCAL` - values for each MPI process part of the matrix
766 .   `MAT_GLOBAL_MAX` - maximum of each value over all MPI processes
767 -   `MAT_GLOBAL_SUM` - sum of each value over all MPI processes
768 
769     Level: beginner
770 
771 .seealso: [](ch_matrices), `MatGetInfo()`, `MatInfo`
772 E*/
773 typedef enum {
774   MAT_LOCAL      = 1,
775   MAT_GLOBAL_MAX = 2,
776   MAT_GLOBAL_SUM = 3
777 } MatInfoType;
778 PETSC_EXTERN PetscErrorCode MatGetInfo(Mat, MatInfoType, MatInfo *);
779 PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat, Vec);
780 PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat, Vec, PetscInt[]);
781 PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat, Vec, PetscInt[]);
782 PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat, Vec, PetscInt[]);
783 PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat, Vec, PetscInt[]);
784 PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat, Vec);
785 PETSC_EXTERN PetscErrorCode MatTranspose(Mat, MatReuse, Mat *);
786 PETSC_EXTERN PetscErrorCode MatTransposeSymbolic(Mat, Mat *);
787 PETSC_EXTERN PetscErrorCode MatTransposeSetPrecursor(Mat, Mat);
788 PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat, MatReuse, Mat *);
789 PETSC_EXTERN PetscErrorCode MatPermute(Mat, IS, IS, Mat *);
790 PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat, Vec, Vec);
791 PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat, Vec, InsertMode);
792 
793 PETSC_EXTERN PetscErrorCode MatEqual(Mat, Mat, PetscBool *);
794 PETSC_EXTERN PetscErrorCode MatMultEqual(Mat, Mat, PetscInt, PetscBool *);
795 PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat, Mat, PetscInt, PetscBool *);
796 PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
797 PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
798 PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeEqual(Mat, Mat, PetscInt, PetscBool *);
799 PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAddEqual(Mat, Mat, PetscInt, PetscBool *);
800 PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
801 PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
802 PETSC_EXTERN PetscErrorCode MatMatTransposeMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
803 PETSC_EXTERN PetscErrorCode MatPtAPMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
804 PETSC_EXTERN PetscErrorCode MatRARtMultEqual(Mat, Mat, Mat, PetscInt, PetscBool *);
805 PETSC_EXTERN PetscErrorCode MatIsLinear(Mat, PetscInt, PetscBool *);
806 
807 PETSC_EXTERN PetscErrorCode MatNorm(Mat, NormType, PetscReal *);
808 PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat, NormType, PetscReal *);
809 PETSC_EXTERN PetscErrorCode MatGetColumnSums(Mat, PetscScalar *);
810 PETSC_EXTERN PetscErrorCode MatGetColumnSumsRealPart(Mat, PetscReal *);
811 PETSC_EXTERN PetscErrorCode MatGetColumnSumsImaginaryPart(Mat, PetscReal *);
812 PETSC_EXTERN PetscErrorCode MatGetColumnMeans(Mat, PetscScalar *);
813 PETSC_EXTERN PetscErrorCode MatGetColumnMeansRealPart(Mat, PetscReal *);
814 PETSC_EXTERN PetscErrorCode MatGetColumnMeansImaginaryPart(Mat, PetscReal *);
815 PETSC_EXTERN PetscErrorCode MatGetColumnReductions(Mat, PetscInt, PetscReal *);
816 PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat);
817 PETSC_EXTERN PetscErrorCode MatSetInf(Mat);
818 PETSC_EXTERN PetscErrorCode MatZeroRows(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
819 PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat, IS, PetscScalar, Vec, Vec);
820 PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
821 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat, PetscInt, const MatStencil[], PetscScalar, Vec, Vec);
822 PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
823 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat, IS, PetscScalar, Vec, Vec);
824 
825 PETSC_EXTERN PetscErrorCode MatGetSize(Mat, PetscInt *, PetscInt *);
826 PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat, PetscInt *, PetscInt *);
827 PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat, PetscInt *, PetscInt *);
828 PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat, const PetscInt **);
829 PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat, PetscInt *, PetscInt *);
830 PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat, const PetscInt **);
831 PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat, IS *, IS *);
832 
833 PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
834 PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrices()", ) static inline PetscErrorCode MatGetSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
835 {
836   return MatCreateSubMatrices(mat, n, irow, icol, scall, submat);
837 }
838 PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]);
839 PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatricesMPI()", ) static inline PetscErrorCode MatGetSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
840 {
841   return MatCreateSubMatricesMPI(mat, n, irow, icol, scall, submat);
842 }
843 PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt, Mat *[]);
844 PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt, Mat *[]);
845 PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat, IS, IS, MatReuse, Mat *);
846 PETSC_DEPRECATED_FUNCTION(3, 8, 0, "MatCreateSubMatrix()", ) static inline PetscErrorCode MatGetSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat)
847 {
848   return MatCreateSubMatrix(mat, isrow, iscol, cll, newmat);
849 }
850 PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat, IS, IS, Mat *);
851 PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat, IS, IS, Mat *);
852 PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat, Mat *);
853 PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat *);
854 
855 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm, Mat, PetscInt, PetscInt, MatReuse, Mat *);
856 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm, Mat, PetscInt, PetscInt, Mat *);
857 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat, Mat);
858 PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat, MatReuse, Mat *);
859 PETSC_EXTERN PetscErrorCode MatAIJGetLocalMat(Mat, Mat *);
860 PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat, MatReuse, IS *, IS *, Mat *);
861 PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat, MatReuse, IS *, Mat *);
862 PETSC_EXTERN PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat, PetscCount *);
863 PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat, Mat, MatReuse, IS *, IS *, Mat *);
864 PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *, const PetscInt *[]);
865 
866 PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat, PetscInt, IS[], PetscInt);
867 PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov);
868 PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat, PetscBool);
869 
870 PETSC_EXTERN PetscErrorCode MatMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
871 
872 PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
873 PETSC_EXTERN PetscErrorCode MatGalerkin(Mat, Mat, Mat, MatReuse, PetscReal, Mat *);
874 
875 PETSC_EXTERN PetscErrorCode MatPtAP(Mat, Mat, MatReuse, PetscReal, Mat *);
876 PETSC_EXTERN PetscErrorCode MatRARt(Mat, Mat, MatReuse, PetscReal, Mat *);
877 
878 PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat, Mat, MatReuse, PetscReal, Mat *);
879 PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat, Mat, MatReuse, PetscReal, Mat *);
880 
881 PETSC_EXTERN PetscErrorCode MatAXPY(Mat, PetscScalar, Mat, MatStructure);
882 PETSC_EXTERN PetscErrorCode MatAYPX(Mat, PetscScalar, Mat, MatStructure);
883 
884 PETSC_EXTERN PetscErrorCode MatScale(Mat, PetscScalar);
885 PETSC_EXTERN PetscErrorCode MatShift(Mat, PetscScalar);
886 
887 PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping, ISLocalToGlobalMapping);
888 PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
889 PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat, PetscLayout *, PetscLayout *);
890 PETSC_EXTERN PetscErrorCode MatSetLayouts(Mat, PetscLayout, PetscLayout);
891 PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
892 PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
893 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat, PetscInt, const PetscInt[], PetscScalar, Vec, Vec);
894 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat, IS, PetscScalar, Vec, Vec);
895 PETSC_EXTERN PetscErrorCode MatGetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], PetscScalar[]);
896 PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
897 PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
898 
899 PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat, PetscInt, PetscInt);
900 PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat, PetscInt *, PetscInt *, PetscInt *, PetscInt *);
901 
902 PETSC_EXTERN PetscErrorCode MatInterpolate(Mat, Vec, Vec);
903 PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat, Vec, Vec, Vec);
904 PETSC_EXTERN PetscErrorCode MatRestrict(Mat, Vec, Vec);
905 PETSC_EXTERN PetscErrorCode MatMatInterpolate(Mat, Mat, Mat *);
906 PETSC_EXTERN PetscErrorCode MatMatInterpolateAdd(Mat, Mat, Mat, Mat *);
907 PETSC_EXTERN PetscErrorCode MatMatRestrict(Mat, Mat, Mat *);
908 PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat, Vec *, Vec *);
909 PETSC_DEPRECATED_FUNCTION(3, 6, 0, "MatCreateVecs()", ) static inline PetscErrorCode MatGetVecs(Mat mat, Vec *x, Vec *y)
910 {
911   return MatCreateVecs(mat, x, y);
912 }
913 PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat, PetscInt, MPI_Comm, MatReuse, Mat *);
914 PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat, MPI_Comm, MatReuse, Mat *);
915 PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat, IS *);
916 PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat, IS *);
917 PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm, Mat, PetscInt, MatReuse, Mat *);
918 
919 /*MC
920    MatSetValue - Set a single entry into a matrix.
921 
922    This value may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()`
923    MUST be called after all calls to `MatSetValue()` have been completed.
924 
925    Synopsis:
926      #include <petscmat.h>
927      PetscErrorCode MatSetValue(Mat m,PetscInt i,PetscInt j,PetscScalar va,InsertMode mode)
928 
929    Not Collective
930 
931    Input Parameters:
932 +  m - the matrix
933 .  i - the row location of the entry
934 .  j - the column location of the entry
935 .  va - the value to insert
936 -  mode - either `INSERT_VALUES` or `ADD_VALUES`
937 
938    Level: beginner
939 
940    Note:
941    For efficiency one should use `MatSetValues()` and set several values simultaneously.
942 
943 .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `InsertMode`, `MatGetValue()`, `MatSetValues()`,
944           `MatSetValueLocal()`, `MatSetValuesLocal()`
945 M*/
946 static inline PetscErrorCode MatSetValue(Mat m, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
947 {
948   return MatSetValues(m, 1, &i, 1, &j, &va, mode);
949 }
950 
951 /*@C
952    MatGetValue - Gets a single value from a matrix
953 
954    Not Collective; can only return a value owned by the given process
955 
956    Input Parameters:
957 +  mat - the matrix
958 .  row - the row location of the entry
959 -  col - the column location of the entry
960 
961    Output Parameter:
962 .  va - the value
963 
964    Level: advanced
965 
966    Notes:
967    The matrix must have been assembled with `MatAssemblyBegin()` and `MatAssemblyEnd` before this call
968 
969    For efficiency one should use `MatGetValues()` and get several values simultaneously.
970 
971    See notes for `MatGetValues()`.
972 
973 .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd`, `MatSetValue()`, `MatGetValueLocal()`, `MatGetValues()`
974 @*/
975 static inline PetscErrorCode MatGetValue(Mat mat, PetscInt row, PetscInt col, PetscScalar *va)
976 {
977   return MatGetValues(mat, 1, &row, 1, &col, va);
978 }
979 
980 /*MC
981    MatSetValueLocal - Inserts or adds a single value into a matrix, using a local numbering of the nodes.
982 
983    Not Collective
984 
985    Input Parameters:
986 +  m - the matrix
987 .  i - the row location of the entry
988 .  j - the column location of the entry
989 .  va - the value to insert
990 -  mode - either `INSERT_VALUES` or `ADD_VALUES`
991 
992    Level: intermediate
993 
994    Notes:
995    For efficiency one should use `MatSetValuesLocal()` and set several values simultaneously.
996 
997    See notes for `MatSetValuesLocal()` for additional information on when and how this function can be used.
998 
999 .seealso: [](ch_matrices), `MatSetValue()`, `MatSetValuesLocal()`
1000 M*/
1001 static inline PetscErrorCode MatSetValueLocal(Mat m, PetscInt i, PetscInt j, PetscScalar va, InsertMode mode)
1002 {
1003   return MatSetValuesLocal(m, 1, &i, 1, &j, &va, mode);
1004 }
1005 
1006 /*MC
1007    MatPreallocateBegin - Begins the block of code that will count the number of nonzeros per
1008        row in a matrix providing the data that one can use to correctly preallocate the matrix.
1009 
1010    Synopsis:
1011    #include <petscmat.h>
1012    PetscErrorCode MatPreallocateBegin(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz)
1013 
1014    Collective
1015 
1016    Input Parameters:
1017 +  comm - the communicator that will share the eventually allocated matrix
1018 .  nrows - the number of LOCAL rows in the matrix
1019 -  ncols - the number of LOCAL columns in the matrix
1020 
1021    Output Parameters:
1022 +  dnz - the array that will be passed to the matrix preallocation routines
1023 -  onz - the other array passed to the matrix preallocation routines
1024 
1025    Level: deprecated (since v3.19)
1026 
1027    Notes:
1028    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
1029    the use of this routine
1030 
1031    This is a macro that handles its own error checking, it does not return an error code.
1032 
1033    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1034 
1035    Developer Note:
1036     This is a MACRO not a function because it has a leading { that is closed by `PetscPreallocateFinalize()`.
1037 
1038 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1039           `MatPreallocateSymmetricSetLocalBlock()`
1040 M*/
1041 #define MatPreallocateBegin(comm, nrows, ncols, dnz, onz) \
1042   do { \
1043     PetscInt              __nrows = (nrows), __ncols = (ncols), __rstart, __end = 0; \
1044     PetscInt PETSC_UNUSED __start; \
1045     PetscCall(PetscCalloc2(__nrows, &(dnz), __nrows, &(onz))); \
1046     PetscCallMPI(MPI_Scan(&__ncols, &__end, 1, MPIU_INT, MPI_SUM, comm)); \
1047     __start = __end - __ncols; \
1048     (void)__start; \
1049     PetscCallMPI(MPI_Scan(&__nrows, &__rstart, 1, MPIU_INT, MPI_SUM, comm)); \
1050   __rstart -= __nrows
1051 
1052 #define MatPreallocateInitialize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateBegin()", ) MatPreallocateBegin(__VA_ARGS__)
1053 
1054 /*MC
1055    MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1056        inserted using a local number of the rows and columns
1057 
1058    Synopsis:
1059    #include <petscmat.h>
1060    PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1061 
1062    Not Collective
1063 
1064    Input Parameters:
1065 +  map - the row mapping from local numbering to global numbering
1066 .  nrows - the number of rows indicated
1067 .  rows - the indices of the rows
1068 .  cmap - the column mapping from local to global numbering
1069 .  ncols - the number of columns in the matrix
1070 .  cols - the columns indicated
1071 .  dnz - the array that will be passed to the matrix preallocation routines
1072 -  onz - the other array passed to the matrix preallocation routines
1073 
1074    Level: deprecated (since v3.19)
1075 
1076    Notes:
1077    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
1078    the use of this routine
1079 
1080    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1081 
1082 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1083           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocalRemoveDups()`
1084 M*/
1085 #define MatPreallocateSetLocal(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
1086   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1087 
1088 /*MC
1089    MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1090        inserted using a local number of the rows and columns. This version removes any duplicate columns in cols
1091 
1092    Synopsis:
1093    #include <petscmat.h>
1094    PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1095 
1096    Not Collective
1097 
1098    Input Parameters:
1099 +  map - the row mapping from local numbering to global numbering
1100 .  nrows - the number of rows indicated
1101 .  rows - the indices of the rows (these values are mapped to the global values)
1102 .  cmap - the column mapping from local to global numbering
1103 .  ncols - the number of columns in the matrix   (this value will be changed if duplicate columns are found)
1104 .  cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed)
1105 .  dnz - the array that will be passed to the matrix preallocation routines
1106 -  onz - the other array passed to the matrix preallocation routines
1107 
1108    Level: deprecated (since v3.19)
1109 
1110    Notes:
1111    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
1112    the use of this routine
1113 
1114    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1115 
1116 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1117           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1118 M*/
1119 #define MatPreallocateSetLocalRemoveDups(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
1120   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApply(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApply(cmap, ncols, cols, cols)); PetscCall(PetscSortRemoveDupsInt(&ncols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1121 
1122 /*MC
1123    MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1124        inserted using a local number of the rows and columns
1125 
1126    Synopsis:
1127    #include <petscmat.h>
1128    PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1129 
1130    Not Collective
1131 
1132    Input Parameters:
1133 +  map - the row mapping from local numbering to global numbering
1134 .  nrows - the number of rows indicated
1135 .  rows - the indices of the rows
1136 .  cmap - the column mapping from local to global numbering
1137 .  ncols - the number of columns in the matrix
1138 .  cols - the columns indicated
1139 .  dnz - the array that will be passed to the matrix preallocation routines
1140 -  onz - the other array passed to the matrix preallocation routines
1141 
1142    Level: deprecated (since v3.19)
1143 
1144    Notes:
1145    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
1146    the use of this routine
1147 
1148    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1149 
1150 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1151           `MatPreallocateBegin()`, `MatPreallocateSymmetricSetLocalBlock()`
1152 M*/
1153 #define MatPreallocateSetLocalBlock(rmap, nrows, rows, cmap, ncols, cols, dnz, onz) \
1154   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(rmap, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(cmap, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSet((rows)[__l], ncols, cols, dnz, onz));)
1155 
1156 /*MC
1157    MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1158        inserted using a local number of the rows and columns
1159 
1160    Synopsis:
1161    #include <petscmat.h>
1162    PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1163 
1164    Not Collective
1165 
1166    Input Parameters:
1167 +  map - the mapping between local numbering and global numbering
1168 .  nrows - the number of rows indicated
1169 .  rows - the indices of the rows
1170 .  ncols - the number of columns in the matrix
1171 .  cols - the columns indicated
1172 .  dnz - the array that will be passed to the matrix preallocation routines
1173 -  onz - the other array passed to the matrix preallocation routines
1174 
1175    Level: deprecated (since v3.19)
1176 
1177    Notes:
1178    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
1179    the use of this routine
1180 
1181    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1182 
1183 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`
1184           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1185 M*/
1186 #define MatPreallocateSymmetricSetLocalBlock(map, nrows, rows, ncols, cols, dnz, onz) \
1187   PetscMacroReturnStandard(PetscCall(ISLocalToGlobalMappingApplyBlock(map, nrows, rows, rows)); PetscCall(ISLocalToGlobalMappingApplyBlock(map, ncols, cols, cols)); for (PetscInt __l = 0; __l < nrows; __l++) PetscCall(MatPreallocateSymmetricSetBlock((rows)[__l], ncols, cols, dnz, onz));)
1188 
1189 /*MC
1190    MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1191        inserted using a local number of the rows and columns
1192 
1193    Synopsis:
1194    #include <petscmat.h>
1195    PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1196 
1197    Not Collective
1198 
1199    Input Parameters:
1200 +  row - the row
1201 .  ncols - the number of columns in the matrix
1202 -  cols - the columns indicated
1203 
1204    Output Parameters:
1205 +  dnz - the array that will be passed to the matrix preallocation routines
1206 -  onz - the other array passed to the matrix preallocation routines
1207 
1208    Level: deprecated (since v3.19)
1209 
1210    Notes:
1211    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
1212    the use of this routine
1213 
1214    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1215 
1216    This is a MACRO not a function because it uses variables declared in MatPreallocateBegin().
1217 
1218 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`
1219           `MatPreallocateBegin()`, `MatPreallocateSetLocal()`
1220 M*/
1221 #define MatPreallocateSet(row, nc, cols, dnz, onz) \
1222   PetscMacroReturnStandard(PetscCheck(row >= __rstart, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " less than first local row %" PetscInt_FMT, row, __rstart); PetscCheck(row < __rstart + __nrows, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to set preallocation for row %" PetscInt_FMT " greater than last local row %" PetscInt_FMT, row, __rstart + __nrows - 1); for (PetscInt __i = 0; __i < nc; ++__i) { \
1223     if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \
1224     else if (dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
1225   })
1226 
1227 /*MC
1228    MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be
1229        inserted using a local number of the rows and columns
1230 
1231    Synopsis:
1232    #include <petscmat.h>
1233    PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz)
1234 
1235    Not Collective
1236 
1237    Input Parameters:
1238 +  nrows - the number of rows indicated
1239 .  rows - the indices of the rows
1240 .  ncols - the number of columns in the matrix
1241 .  cols - the columns indicated
1242 .  dnz - the array that will be passed to the matrix preallocation routines
1243 -  onz - the other array passed to the matrix preallocation routines
1244 
1245    Level: deprecated (since v3.19)
1246 
1247    Notes:
1248    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
1249    the use of this routine
1250 
1251    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1252 
1253    This is a MACRO not a function because it uses variables declared in MatPreallocateBegin().
1254 
1255 .seealso: [](ch_matrices), `MatPreallocateEnd()`, `MatPreallocateSet()`, `MatPreallocateBegin()`,
1256           `MatPreallocateSymmetricSetLocalBlock()`, `MatPreallocateSetLocal()`
1257 M*/
1258 #define MatPreallocateSymmetricSetBlock(row, nc, cols, dnz, onz) \
1259   PetscMacroReturnStandard(for (PetscInt __i = 0; __i < nc; __i++) { \
1260     if (cols[__i] >= __end) onz[row - __rstart]++; \
1261     else if (cols[__i] >= row && dnz[row - __rstart] < __ncols) dnz[row - __rstart]++; \
1262   })
1263 
1264 /*MC
1265    MatPreallocateLocation -  An alternative to MatPreallocateSet() that puts the nonzero locations into the matrix if it exists
1266 
1267    Synopsis:
1268    #include <petscmat.h>
1269    PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz)
1270 
1271    Not Collective
1272 
1273    Input Parameters:
1274 +  A - matrix
1275 .  row - row where values exist (must be local to this process)
1276 .  ncols - number of columns
1277 .  cols - columns with nonzeros
1278 .  dnz - the array that will be passed to the matrix preallocation routines
1279 -  onz - the other array passed to the matrix preallocation routines
1280 
1281    Level: deprecated (since v3.19)
1282 
1283    Notes:
1284    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
1285    the use of this routine
1286 
1287    Do not malloc or free `dnz` and `onz` that is handled internally by these routines
1288 
1289   This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines.
1290 
1291 .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1292           `MatPreallocateSymmetricSetLocalBlock()`
1293 M*/
1294 #define MatPreallocateLocation(A, row, ncols, cols, dnz, onz) (A ? MatSetValues(A, 1, &row, ncols, cols, NULL, INSERT_VALUES) : MatPreallocateSet(row, ncols, cols, dnz, onz))
1295 
1296 /*MC
1297    MatPreallocateEnd - Ends the block of code that will count the number of nonzeros per
1298        row in a matrix providing the data that one can use to correctly preallocate the matrix.
1299 
1300    Synopsis:
1301    #include <petscmat.h>
1302    PetscErrorCode MatPreallocateEnd(PetscInt *dnz, PetscInt *onz)
1303 
1304    Collective
1305 
1306    Input Parameters:
1307 +  dnz - the array that was be passed to the matrix preallocation routines
1308 -  onz - the other array passed to the matrix preallocation routines
1309 
1310    Level: deprecated (since v3.19)
1311 
1312    Notes:
1313    This routine is no longer needed since assembling matrices without explicit preallocation will not be slower than
1314    the use of this routine
1315 
1316    Do not malloc or free `dnz` and `onz`, that is handled internally by these routines
1317 
1318    Developer Note:
1319     This is a MACRO not a function because it closes the { started in MatPreallocateBegin().
1320 
1321 .seealso: [](ch_matrices), `MatPreallocateBegin()`, `MatPreallocateSet()`, `MatPreallocateSymmetricSetBlock()`, `MatPreallocateSetLocal()`,
1322           `MatPreallocateSymmetricSetLocalBlock()`
1323 M*/
1324 #define MatPreallocateEnd(dnz, onz) \
1325   PetscCall(PetscFree2(dnz, onz)); \
1326   } \
1327   while (0)
1328 
1329 #define MatPreallocateFinalize(...) PETSC_DEPRECATED_MACRO(3, 18, 0, "MatPreallocateEnd()", ) MatPreallocateEnd(__VA_ARGS__)
1330 
1331 /* Routines unique to particular data structures */
1332 PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat, void *);
1333 
1334 PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat, IS *, IS *);
1335 PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat, PetscInt *, PetscInt *[], PetscInt *);
1336 
1337 PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat, PetscInt[]);
1338 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat, PetscInt[]);
1339 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1340 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1341 PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *);
1342 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm, PetscInt, PetscInt, PetscInt[], PetscInt[], PetscScalar[], Mat *, PetscInt, PetscBool);
1343 
1344 #define MAT_SKIP_ALLOCATION -4
1345 
1346 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1347 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1348 PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat, PetscInt, const PetscInt[]);
1349 PETSC_EXTERN PetscErrorCode MatSeqAIJSetTotalPreallocation(Mat, PetscInt);
1350 
1351 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1352 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1353 PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
1354 PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1355 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1356 PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]);
1357 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]);
1358 PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat, PetscInt[], PetscInt[], PetscInt[]);
1359 PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat, Mat *);
1360 PETSC_EXTERN PetscErrorCode MatMPIAdjToSeqRankZero(Mat, Mat *);
1361 PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat, PetscScalar[]);
1362 PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat, PetscScalar[]);
1363 PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
1364 PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat, Mat *, Mat *, const PetscInt *[]);
1365 PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat, Mat *);
1366 
1367 PETSC_EXTERN PetscErrorCode MatDenseGetLDA(Mat, PetscInt *);
1368 PETSC_EXTERN PetscErrorCode MatDenseSetLDA(Mat, PetscInt);
1369 PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatDenseSetLDA()", ) static inline PetscErrorCode MatSeqDenseSetLDA(Mat A, PetscInt lda)
1370 {
1371   return MatDenseSetLDA(A, lda);
1372 }
1373 PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat, Mat *);
1374 
1375 PETSC_EXTERN PetscErrorCode MatBlockMatSetPreallocation(Mat, PetscInt, PetscInt, const PetscInt[]);
1376 
1377 PETSC_EXTERN PetscErrorCode MatStoreValues(Mat);
1378 PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat);
1379 
1380 PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat, IS *);
1381 PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat, IS *);
1382 /*
1383   These routines are not usually accessed directly, rather solving is
1384   done through the KSP and PC interfaces.
1385 */
1386 
1387 /*J
1388     MatOrderingType - String with the name of a PETSc matrix ordering. These orderings are most commonly used
1389     to reduce fill in sparse factorizations.
1390 
1391    Level: beginner
1392 
1393    Notes:
1394    If `MATORDERINGEXTERNAL` is used then PETSc does not compute an ordering and instead the external factorization solver package called utilizes one
1395    of its own.
1396 
1397    There is no `MatOrdering` object, the ordering is obtained directly from the matrix with `MatGetOrdering()`
1398 
1399    Developer Note:
1400    This API should be converted to an API similar to those for `MatColoring` and `MatPartitioning`
1401 
1402 .seealso: [](ch_matrices), [](sec_graph), `MatGetFactor()`, `MatGetOrdering()`, `MatColoringType`, `MatPartitioningType`, `MatCoarsenType`, `MatCoarsenType`,
1403           `PCFactorSetOrderingType()`
1404 J*/
1405 typedef const char *MatOrderingType;
1406 #define MATORDERINGNATURAL       "natural"
1407 #define MATORDERINGND            "nd"
1408 #define MATORDERING1WD           "1wd"
1409 #define MATORDERINGRCM           "rcm"
1410 #define MATORDERINGQMD           "qmd"
1411 #define MATORDERINGROWLENGTH     "rowlength"
1412 #define MATORDERINGWBM           "wbm"
1413 #define MATORDERINGSPECTRAL      "spectral"
1414 #define MATORDERINGAMD           "amd"           /* only works if UMFPACK is installed with PETSc */
1415 #define MATORDERINGMETISND       "metisnd"       /* only works if METIS is installed with PETSc */
1416 #define MATORDERINGNATURAL_OR_ND "natural_or_nd" /* special coase used for Cholesky and ICC, allows ND when AIJ matrix is used but Natural when SBAIJ is used */
1417 #define MATORDERINGEXTERNAL      "external"      /* uses an ordering type internal to the factorization package */
1418 
1419 PETSC_EXTERN PetscErrorCode    MatGetOrdering(Mat, MatOrderingType, IS *, IS *);
1420 PETSC_EXTERN PetscErrorCode    MatGetOrderingList(PetscFunctionList *);
1421 PETSC_EXTERN PetscErrorCode    MatOrderingRegister(const char[], PetscErrorCode (*)(Mat, MatOrderingType, IS *, IS *));
1422 PETSC_EXTERN PetscFunctionList MatOrderingList;
1423 
1424 #include "petscmatcoarsen.h"
1425 
1426 PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat, PetscReal, IS, IS);
1427 PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat, PetscReal, PetscBool, Mat *);
1428 
1429 PETSC_EXTERN PetscErrorCode MatFactorGetPreferredOrdering(Mat, MatFactorType, MatOrderingType *);
1430 
1431 /*S
1432     MatFactorShiftType - Type of numeric shift used for factorizations
1433 
1434    Values:
1435 +  `MAT_SHIFT_NONE` - do not shift the matrix diagonal entries
1436 .  `MAT_SHIFT_NONZERO` - shift the entries to be non-zero
1437 .  `MAT_SHIFT_POSITIVE_DEFINITE` - shift the entries to force the factorization to be positive definite
1438 -  `MAT_SHIFT_INBLOCKS` - only shift the factors inside the small dense diagonal blocks of the matrix, for example with `MATBAIJ`
1439 
1440    Level: intermediate
1441 
1442 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `PCFactorSetShiftType()`
1443 S*/
1444 typedef enum {
1445   MAT_SHIFT_NONE,
1446   MAT_SHIFT_NONZERO,
1447   MAT_SHIFT_POSITIVE_DEFINITE,
1448   MAT_SHIFT_INBLOCKS
1449 } MatFactorShiftType;
1450 PETSC_EXTERN const char *const MatFactorShiftTypes[];
1451 PETSC_EXTERN const char *const MatFactorShiftTypesDetail[];
1452 
1453 /*S
1454     MatFactorError - indicates what type of error was generated in a matrix factorization
1455 
1456     Values:
1457 +   `MAT_FACTOR_NOERROR` - there was no error during the factorization
1458 .   `MAT_FACTOR_STRUCT_ZEROPIVOT` - there was a missing entry in a diagonal location of the matrix
1459 .   `MAT_FACTOR_NUMERIC_ZEROPIVOT` - there was a (near) zero pivot during the factorization
1460 .   `MAT_FACTOR_OUTMEMORY` - the factorization has run out of memory
1461 -   `MAT_FACTOR_OTHER` - some other error has occurred.
1462 
1463     Level: intermediate
1464 
1465     Note:
1466     When a factorization is done in a preconditioner `PC` the error may be propagated up to a `PCFailedReason` or a `KSPConvergedReason`
1467 
1468 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorClearError()`,
1469           `PCFailedReason`, `PCGetFailedReason()`, `KSPConvergedReason`
1470 S*/
1471 typedef enum {
1472   MAT_FACTOR_NOERROR,
1473   MAT_FACTOR_STRUCT_ZEROPIVOT,
1474   MAT_FACTOR_NUMERIC_ZEROPIVOT,
1475   MAT_FACTOR_OUTMEMORY,
1476   MAT_FACTOR_OTHER
1477 } MatFactorError;
1478 
1479 PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat, MatFactorError *);
1480 PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat);
1481 PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat, PetscReal *, PetscInt *);
1482 
1483 /*S
1484    MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization
1485 
1486    Level: developer
1487 
1488    Note:
1489    You can use `MatFactorInfoInitialize()` to set default values.
1490 
1491    Fortran Note:
1492    The data is available in a double precision arrays of size `MAT_FACTORINFO_SIZE`
1493 
1494 .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatILUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`,
1495           `MatICCFactorSymbolic()`, `MatICCFactor()`, `MatFactorInfoInitialize()`
1496 S*/
1497 typedef struct {
1498   PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */
1499   PetscReal usedt;
1500   PetscReal dt;            /* drop tolerance */
1501   PetscReal dtcol;         /* tolerance for pivoting */
1502   PetscReal dtcount;       /* maximum nonzeros to be allowed per row */
1503   PetscReal fill;          /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */
1504   PetscReal levels;        /* ICC/ILU(levels) */
1505   PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0
1506                                    factorization may be faster if do not pivot */
1507   PetscReal zeropivot;     /* pivot is called zero if less than this */
1508   PetscReal shifttype;     /* type of shift added to matrix factor to prevent zero pivots */
1509   PetscReal shiftamount;   /* how large the shift is */
1510 } MatFactorInfo;
1511 
1512 PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *);
1513 PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat, IS, const MatFactorInfo *);
1514 PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
1515 PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat, Mat, const MatFactorInfo *);
1516 PETSC_EXTERN PetscErrorCode MatLUFactor(Mat, IS, IS, const MatFactorInfo *);
1517 PETSC_EXTERN PetscErrorCode MatILUFactor(Mat, IS, IS, const MatFactorInfo *);
1518 PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
1519 PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat, Mat, IS, IS, const MatFactorInfo *);
1520 PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
1521 PETSC_EXTERN PetscErrorCode MatICCFactor(Mat, IS, const MatFactorInfo *);
1522 PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat, Mat, const MatFactorInfo *);
1523 PETSC_EXTERN PetscErrorCode MatQRFactor(Mat, IS, const MatFactorInfo *);
1524 PETSC_EXTERN PetscErrorCode MatQRFactorSymbolic(Mat, Mat, IS, const MatFactorInfo *);
1525 PETSC_EXTERN PetscErrorCode MatQRFactorNumeric(Mat, Mat, const MatFactorInfo *);
1526 PETSC_EXTERN PetscErrorCode MatGetInertia(Mat, PetscInt *, PetscInt *, PetscInt *);
1527 PETSC_EXTERN PetscErrorCode MatSolve(Mat, Vec, Vec);
1528 PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat, Vec, Vec);
1529 PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat, Vec, Vec);
1530 PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat, Vec, Vec, Vec);
1531 PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat, Vec, Vec);
1532 PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat, Vec, Vec, Vec);
1533 PETSC_EXTERN PetscErrorCode MatSolves(Mat, Vecs, Vecs);
1534 PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat);
1535 
1536 typedef enum {
1537   MAT_FACTOR_SCHUR_UNFACTORED,
1538   MAT_FACTOR_SCHUR_FACTORED,
1539   MAT_FACTOR_SCHUR_INVERTED
1540 } MatFactorSchurStatus;
1541 PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat, IS);
1542 PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
1543 PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat, Mat *, MatFactorSchurStatus);
1544 PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat);
1545 PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat, Mat *, MatFactorSchurStatus *);
1546 PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat, Vec, Vec);
1547 PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat, Vec, Vec);
1548 PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat);
1549 
1550 PETSC_EXTERN PetscErrorCode MatSeqDenseInvert(Mat);
1551 /*E
1552     MatSORType - What type of (S)SOR to perform
1553 
1554    Values:
1555 +  `SOR_FORWARD_SWEEP` - do a sweep from the first row of the matrix to the last
1556 .  `SOR_BACKWARD_SWEEP` -  do a sweep from the last row to the first
1557 .  `SOR_SYMMETRIC_SWEEP` - do a sweep from the first row to the last and then back to the first
1558 .  `SOR_LOCAL_FORWARD_SWEEP` - each MPI rank does its own forward sweep with no communication
1559 .  `SOR_LOCAL_BACKWARD_SWEEP` - each MPI rank does its own backward sweep with no communication
1560 .  `SOR_LOCAL_SYMMETRIC_SWEEP` - each MPI rank does its own symmetric sweep with no communication
1561 .  `SOR_ZERO_INITIAL_GUESS` - indicates the initial solution is zero so the sweep can avoid unneeded computation
1562 .  `SOR_EISENSTAT` - apply the Eisentat application of SOR, see `PCEISENSTAT`
1563 .  `SOR_APPLY_UPPER` - multiply by the upper triangular portion of the matrix
1564 -  `SOR_APPLY_LOWER` - multiply by the lower triangular portion of the matrix
1565 
1566     Level: beginner
1567 
1568    Note:
1569    These may be bitwise ORd together
1570 
1571    Developer Note:
1572    Since `MatSORType` may be bitwise ORd together, so do not change the numerical values below
1573 
1574 .seealso: [](ch_matrices), `MatSOR()`
1575 E*/
1576 typedef enum {
1577   SOR_FORWARD_SWEEP         = 1,
1578   SOR_BACKWARD_SWEEP        = 2,
1579   SOR_SYMMETRIC_SWEEP       = 3,
1580   SOR_LOCAL_FORWARD_SWEEP   = 4,
1581   SOR_LOCAL_BACKWARD_SWEEP  = 8,
1582   SOR_LOCAL_SYMMETRIC_SWEEP = 12,
1583   SOR_ZERO_INITIAL_GUESS    = 16,
1584   SOR_EISENSTAT             = 32,
1585   SOR_APPLY_UPPER           = 64,
1586   SOR_APPLY_LOWER           = 128
1587 } MatSORType;
1588 PETSC_EXTERN PetscErrorCode MatSOR(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
1589 
1590 /*S
1591      MatColoring - Object for managing the coloring of matrices.
1592 
1593    Level: beginner
1594 
1595    Notes:
1596    Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
1597    matrix comes from via `DMCreateColoring()`. In general using the mesh produces a more optimal coloring (fewer colors).
1598 
1599    Once a coloring is available `MatFDColoringCreate()` creates an object that can be used to efficiently compute Jacobians using that coloring. This
1600    same object can also be used to efficiently convert data created by Automatic Differentiation tools to PETSc sparse matrices.
1601 
1602 .seealso: [](ch_matrices), [](sec_graph), `MatFDColoringCreate()`, `MatColoringWeightType`, `ISColoring`, `MatFDColoring`, `DMCreateColoring()`, `MatColoringCreate()`,
1603           `MatPartitioning`, `MatColoringType`, `MatPartitioningType`, `MatOrderingType`, `MatColoringSetWeightType()`,
1604           `MatColoringSetWeights()`, `MatCoarsenType`, `MatCoarsen`
1605 S*/
1606 typedef struct _p_MatColoring *MatColoring;
1607 
1608 /*J
1609     MatColoringType - String with the name of a PETSc matrix coloring
1610 
1611    Level: beginner
1612 
1613 .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatFDColoringCreate()`, `MatColoringSetType()`, `MatColoring`
1614 J*/
1615 typedef const char *MatColoringType;
1616 #define MATCOLORINGJP      "jp"
1617 #define MATCOLORINGPOWER   "power"
1618 #define MATCOLORINGNATURAL "natural"
1619 #define MATCOLORINGSL      "sl"
1620 #define MATCOLORINGLF      "lf"
1621 #define MATCOLORINGID      "id"
1622 #define MATCOLORINGGREEDY  "greedy"
1623 
1624 /*E
1625    MatColoringWeightType - Type of weight scheme used for the coloring algorithm
1626 
1627     Values:
1628 +   `MAT_COLORING_RANDOM`  - Random weights
1629 .   `MAT_COLORING_LEXICAL` - Lexical weighting based upon global numbering.
1630 -   `MAT_COLORING_LF`      - Last-first weighting.
1631 
1632     Level: intermediate
1633 
1634 .seealso: [](ch_matrices), `MatColoring`, `MatColoringCreate()`, `MatColoringSetWeightType()`, `MatColoringSetWeights()`
1635 E*/
1636 typedef enum {
1637   MAT_COLORING_WEIGHT_RANDOM,
1638   MAT_COLORING_WEIGHT_LEXICAL,
1639   MAT_COLORING_WEIGHT_LF,
1640   MAT_COLORING_WEIGHT_SL
1641 } MatColoringWeightType;
1642 
1643 PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat, MatColoring *);
1644 PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat, PetscInt, PetscInt *);
1645 PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring *);
1646 PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring, PetscViewer);
1647 PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring, MatColoringType);
1648 PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring);
1649 PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring, PetscInt);
1650 PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring, PetscInt *);
1651 PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring, PetscInt);
1652 PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring, PetscInt *);
1653 PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring, ISColoring *);
1654 PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[], PetscErrorCode (*)(MatColoring));
1655 PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat, PetscInt, PetscInt, ISColoringValue[], ISColoring *);
1656 PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring, MatColoringWeightType);
1657 PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring, PetscReal *, PetscInt *);
1658 PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring, PetscReal **, PetscInt **lperm);
1659 PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring, ISColoring);
1660 PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatColoringTest()", ) static inline PetscErrorCode MatColoringTestValid(MatColoring matcoloring, ISColoring iscoloring)
1661 {
1662   return MatColoringTest(matcoloring, iscoloring);
1663 }
1664 PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat, ISColoring);
1665 
1666 /*S
1667      MatFDColoring - Object for computing a sparse Jacobian via finite differences with coloring
1668 
1669    Level: beginner
1670 
1671    Notes:
1672    This object is creating utilizing a coloring provided by the `MatColoring` object or `DMCreateColoring()`
1673 
1674    The `SNES` option `-snes_fd_coloring` will cause the Jacobian needed by `SNES` to be computed via a use of this object
1675 
1676 .seealso: [](ch_matrices), `Mat`, `MatFDColoringCreate()`, `MatFDColoringSetFunction()`, `MatColoring`, `DMCreateColoring()`
1677 S*/
1678 typedef struct _p_MatFDColoring *MatFDColoring;
1679 
1680 PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat, ISColoring, MatFDColoring *);
1681 PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring *);
1682 PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring, PetscViewer);
1683 PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring, PetscErrorCode (*)(void), void *);
1684 PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring, PetscErrorCode (**)(void), void **);
1685 PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring, PetscReal, PetscReal);
1686 PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring);
1687 PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat, MatFDColoring, Vec, void *);
1688 PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring, Vec);
1689 PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring, PetscInt *, const PetscInt *[]);
1690 PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat, ISColoring, MatFDColoring);
1691 PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring, PetscInt, PetscInt);
1692 PETSC_EXTERN PetscErrorCode MatFDColoringSetValues(Mat, MatFDColoring, const PetscScalar *);
1693 
1694 /*S
1695      MatTransposeColoring - Object for computing a sparse matrix product C=A*B^T via coloring
1696 
1697    Level: developer
1698 
1699 .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MatTransposeColoringCreate()`
1700 S*/
1701 typedef struct _p_MatTransposeColoring *MatTransposeColoring;
1702 
1703 PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat, ISColoring, MatTransposeColoring *);
1704 PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring, Mat, Mat);
1705 PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring, Mat, Mat);
1706 PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *);
1707 
1708 /*S
1709      MatPartitioning - Object for managing the partitioning of a matrix or graph
1710 
1711    Level: beginner
1712 
1713    Note:
1714      There is also a `PetscPartitioner` object that provides the same functionality. It can utilize the `MatPartitioning` operations
1715      via `PetscPartitionerSetType`(p,`PETSCPARTITIONERMATPARTITIONING`)
1716 
1717    Developers Note:
1718      It is an extra maintenance and documentation cost to have two objects with the same functionality. `PetscPartitioner` should be removed
1719 
1720 .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioningType`, `MatColoring`, `MatGetOrdering()`, `MatOrderingType`,
1721           `MatCoarsenType`, `MatCoarsenType`
1722 S*/
1723 typedef struct _p_MatPartitioning *MatPartitioning;
1724 
1725 /*J
1726     MatPartitioningType - String with the name of a PETSc matrix partitioning
1727 
1728    Level: beginner
1729 dm
1730 .seealso: [](ch_matrices), [](sec_graph), `Mat`, `MatPartitioningCreate()`, `MatPartitioning`, `MatPartitioningSetType()`, `MatColoringType`, `MatOrderingType`,
1731           `MatCoarsenType`, `MatCoarsenType`
1732 J*/
1733 typedef const char *MatPartitioningType;
1734 #define MATPARTITIONINGCURRENT  "current"
1735 #define MATPARTITIONINGAVERAGE  "average"
1736 #define MATPARTITIONINGSQUARE   "square"
1737 #define MATPARTITIONINGPARMETIS "parmetis"
1738 #define MATPARTITIONINGCHACO    "chaco"
1739 #define MATPARTITIONINGPARTY    "party"
1740 #define MATPARTITIONINGPTSCOTCH "ptscotch"
1741 #define MATPARTITIONINGHIERARCH "hierarch"
1742 
1743 PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm, MatPartitioning *);
1744 PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning, MatPartitioningType);
1745 PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning, PetscInt);
1746 PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning, Mat);
1747 PETSC_EXTERN PetscErrorCode MatPartitioningSetNumberVertexWeights(MatPartitioning, PetscInt);
1748 PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning, const PetscInt[]);
1749 PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning, const PetscReal[]);
1750 PETSC_EXTERN PetscErrorCode MatPartitioningSetUseEdgeWeights(MatPartitioning, PetscBool);
1751 PETSC_EXTERN PetscErrorCode MatPartitioningGetUseEdgeWeights(MatPartitioning, PetscBool *);
1752 PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning, IS *);
1753 PETSC_EXTERN PetscErrorCode MatPartitioningImprove(MatPartitioning, IS *);
1754 PETSC_EXTERN PetscErrorCode MatPartitioningViewImbalance(MatPartitioning, IS);
1755 PETSC_EXTERN PetscErrorCode MatPartitioningApplyND(MatPartitioning, IS *);
1756 PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning *);
1757 PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[], PetscErrorCode (*)(MatPartitioning));
1758 PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning, PetscViewer);
1759 PETSC_EXTERN PetscErrorCode MatPartitioningViewFromOptions(MatPartitioning, PetscObject, const char[]);
1760 PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning);
1761 PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning, MatPartitioningType *);
1762 
1763 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part);
1764 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning);
1765 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *);
1766 
1767 typedef enum {
1768   MP_CHACO_MULTILEVEL = 1,
1769   MP_CHACO_SPECTRAL   = 2,
1770   MP_CHACO_LINEAR     = 4,
1771   MP_CHACO_RANDOM     = 5,
1772   MP_CHACO_SCATTERED  = 6
1773 } MPChacoGlobalType;
1774 PETSC_EXTERN const char *const MPChacoGlobalTypes[];
1775 typedef enum {
1776   MP_CHACO_KERNIGHAN = 1,
1777   MP_CHACO_NONE      = 2
1778 } MPChacoLocalType;
1779 PETSC_EXTERN const char *const MPChacoLocalTypes[];
1780 typedef enum {
1781   MP_CHACO_LANCZOS = 0,
1782   MP_CHACO_RQI     = 1
1783 } MPChacoEigenType;
1784 PETSC_EXTERN const char *const MPChacoEigenTypes[];
1785 
1786 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning, MPChacoGlobalType);
1787 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning, MPChacoGlobalType *);
1788 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning, MPChacoLocalType);
1789 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning, MPChacoLocalType *);
1790 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning, PetscReal);
1791 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning, MPChacoEigenType);
1792 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning, MPChacoEigenType *);
1793 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning, PetscReal);
1794 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning, PetscReal *);
1795 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning, PetscInt);
1796 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning, PetscInt *);
1797 
1798 #define MP_PARTY_OPT "opt"
1799 #define MP_PARTY_LIN "lin"
1800 #define MP_PARTY_SCA "sca"
1801 #define MP_PARTY_RAN "ran"
1802 #define MP_PARTY_GBF "gbf"
1803 #define MP_PARTY_GCF "gcf"
1804 #define MP_PARTY_BUB "bub"
1805 #define MP_PARTY_DEF "def"
1806 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning, const char *);
1807 #define MP_PARTY_HELPFUL_SETS  "hs"
1808 #define MP_PARTY_KERNIGHAN_LIN "kl"
1809 #define MP_PARTY_NONE          "no"
1810 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning, const char *);
1811 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning, PetscReal);
1812 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning, PetscBool);
1813 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning, PetscBool);
1814 
1815 typedef enum {
1816   MP_PTSCOTCH_DEFAULT,
1817   MP_PTSCOTCH_QUALITY,
1818   MP_PTSCOTCH_SPEED,
1819   MP_PTSCOTCH_BALANCE,
1820   MP_PTSCOTCH_SAFETY,
1821   MP_PTSCOTCH_SCALABILITY
1822 } MPPTScotchStrategyType;
1823 PETSC_EXTERN const char *const MPPTScotchStrategyTypes[];
1824 
1825 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning, PetscReal);
1826 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning, PetscReal *);
1827 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning, MPPTScotchStrategyType);
1828 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning, MPPTScotchStrategyType *);
1829 
1830 /*
1831  * hierarchical partitioning
1832  */
1833 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning, IS *);
1834 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning, IS *);
1835 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning, PetscInt);
1836 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt);
1837 
1838 PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat, PetscInt, Mat *);
1839 
1840 /*
1841     If you add entries here you must also add them to src/mat/f90-mod/petscmat.h
1842     If any of the enum values are changed, also update dMatOps dict at src/binding/petsc4py/src/libpetsc4py/libpetsc4py.pyx
1843 */
1844 typedef enum {
1845   MATOP_SET_VALUES               = 0,
1846   MATOP_GET_ROW                  = 1,
1847   MATOP_RESTORE_ROW              = 2,
1848   MATOP_MULT                     = 3,
1849   MATOP_MULT_ADD                 = 4,
1850   MATOP_MULT_TRANSPOSE           = 5,
1851   MATOP_MULT_TRANSPOSE_ADD       = 6,
1852   MATOP_SOLVE                    = 7,
1853   MATOP_SOLVE_ADD                = 8,
1854   MATOP_SOLVE_TRANSPOSE          = 9,
1855   MATOP_SOLVE_TRANSPOSE_ADD      = 10,
1856   MATOP_LUFACTOR                 = 11,
1857   MATOP_CHOLESKYFACTOR           = 12,
1858   MATOP_SOR                      = 13,
1859   MATOP_TRANSPOSE                = 14,
1860   MATOP_GETINFO                  = 15,
1861   MATOP_EQUAL                    = 16,
1862   MATOP_GET_DIAGONAL             = 17,
1863   MATOP_DIAGONAL_SCALE           = 18,
1864   MATOP_NORM                     = 19,
1865   MATOP_ASSEMBLY_BEGIN           = 20,
1866   MATOP_ASSEMBLY_END             = 21,
1867   MATOP_SET_OPTION               = 22,
1868   MATOP_ZERO_ENTRIES             = 23,
1869   MATOP_ZERO_ROWS                = 24,
1870   MATOP_LUFACTOR_SYMBOLIC        = 25,
1871   MATOP_LUFACTOR_NUMERIC         = 26,
1872   MATOP_CHOLESKY_FACTOR_SYMBOLIC = 27,
1873   MATOP_CHOLESKY_FACTOR_NUMERIC  = 28,
1874   MATOP_SETUP                    = 29,
1875   MATOP_ILUFACTOR_SYMBOLIC       = 30,
1876   MATOP_ICCFACTOR_SYMBOLIC       = 31,
1877   MATOP_GET_DIAGONAL_BLOCK       = 32,
1878   MATOP_SET_INF                  = 33,
1879   MATOP_DUPLICATE                = 34,
1880   MATOP_FORWARD_SOLVE            = 35,
1881   MATOP_BACKWARD_SOLVE           = 36,
1882   MATOP_ILUFACTOR                = 37,
1883   MATOP_ICCFACTOR                = 38,
1884   MATOP_AXPY                     = 39,
1885   MATOP_CREATE_SUBMATRICES       = 40,
1886   MATOP_INCREASE_OVERLAP         = 41,
1887   MATOP_GET_VALUES               = 42,
1888   MATOP_COPY                     = 43,
1889   MATOP_GET_ROW_MAX              = 44,
1890   MATOP_SCALE                    = 45,
1891   MATOP_SHIFT                    = 46,
1892   MATOP_DIAGONAL_SET             = 47,
1893   MATOP_ZERO_ROWS_COLUMNS        = 48,
1894   MATOP_SET_RANDOM               = 49,
1895   MATOP_GET_ROW_IJ               = 50,
1896   MATOP_RESTORE_ROW_IJ           = 51,
1897   MATOP_GET_COLUMN_IJ            = 52,
1898   MATOP_RESTORE_COLUMN_IJ        = 53,
1899   MATOP_FDCOLORING_CREATE        = 54,
1900   MATOP_COLORING_PATCH           = 55,
1901   MATOP_SET_UNFACTORED           = 56,
1902   MATOP_PERMUTE                  = 57,
1903   MATOP_SET_VALUES_BLOCKED       = 58,
1904   MATOP_CREATE_SUBMATRIX         = 59,
1905   MATOP_DESTROY                  = 60,
1906   MATOP_VIEW                     = 61,
1907   MATOP_CONVERT_FROM             = 62,
1908   /* MATOP_PLACEHOLDER_63=63 */
1909   MATOP_MATMAT_MULT_SYMBOLIC    = 64,
1910   MATOP_MATMAT_MULT_NUMERIC     = 65,
1911   MATOP_SET_LOCAL_TO_GLOBAL_MAP = 66,
1912   MATOP_SET_VALUES_LOCAL        = 67,
1913   MATOP_ZERO_ROWS_LOCAL         = 68,
1914   MATOP_GET_ROW_MAX_ABS         = 69,
1915   MATOP_GET_ROW_MIN_ABS         = 70,
1916   MATOP_CONVERT                 = 71,
1917   MATOP_HAS_OPERATION           = 72,
1918   /* MATOP_PLACEHOLDER_73=73, */
1919   MATOP_SET_VALUES_ADIFOR = 74,
1920   MATOP_FD_COLORING_APPLY = 75,
1921   MATOP_SET_FROM_OPTIONS  = 76,
1922   /* MATOP_PLACEHOLDER_77=77, */
1923   /* MATOP_PLACEHOLDER_78=78, */
1924   MATOP_FIND_ZERO_DIAGONALS       = 79,
1925   MATOP_MULT_MULTIPLE             = 80,
1926   MATOP_SOLVE_MULTIPLE            = 81,
1927   MATOP_GET_INERTIA               = 82,
1928   MATOP_LOAD                      = 83,
1929   MATOP_IS_SYMMETRIC              = 84,
1930   MATOP_IS_HERMITIAN              = 85,
1931   MATOP_IS_STRUCTURALLY_SYMMETRIC = 86,
1932   MATOP_SET_VALUES_BLOCKEDLOCAL   = 87,
1933   MATOP_CREATE_VECS               = 88,
1934   /* MATOP_PLACEHOLDER_89=89, */
1935   MATOP_MAT_MULT_SYMBOLIC = 90,
1936   MATOP_MAT_MULT_NUMERIC  = 91,
1937   /* MATOP_PLACEHOLDER_92=92, */
1938   MATOP_PTAP_SYMBOLIC = 93,
1939   MATOP_PTAP_NUMERIC  = 94,
1940   /* MATOP_PLACEHOLDER_95=95, */
1941   MATOP_MAT_TRANSPOSE_MULT_SYMBO = 96,
1942   MATOP_MAT_TRANSPOSE_MULT_NUMER = 97,
1943   MATOP_BIND_TO_CPU              = 98,
1944   MATOP_PRODUCTSETFROMOPTIONS    = 99,
1945   MATOP_PRODUCTSYMBOLIC          = 100,
1946   MATOP_PRODUCTNUMERIC           = 101,
1947   MATOP_CONJUGATE                = 102,
1948   MATOP_VIEW_NATIVE              = 103,
1949   MATOP_SET_VALUES_ROW           = 104,
1950   MATOP_REAL_PART                = 105,
1951   MATOP_IMAGINARY_PART           = 106,
1952   MATOP_GET_ROW_UPPER_TRIANGULAR = 107,
1953   MATOP_RESTORE_ROW_UPPER_TRIANG = 108,
1954   MATOP_MAT_SOLVE                = 109,
1955   MATOP_MAT_SOLVE_TRANSPOSE      = 110,
1956   MATOP_GET_ROW_MIN              = 111,
1957   MATOP_GET_COLUMN_VECTOR        = 112,
1958   MATOP_MISSING_DIAGONAL         = 113,
1959   MATOP_GET_SEQ_NONZERO_STRUCTUR = 114,
1960   MATOP_CREATE                   = 115,
1961   MATOP_GET_GHOSTS               = 116,
1962   MATOP_GET_LOCAL_SUB_MATRIX     = 117,
1963   MATOP_RESTORE_LOCALSUB_MATRIX  = 118,
1964   MATOP_MULT_DIAGONAL_BLOCK      = 119,
1965   MATOP_HERMITIAN_TRANSPOSE      = 120,
1966   MATOP_MULT_HERMITIAN_TRANSPOSE = 121,
1967   MATOP_MULT_HERMITIAN_TRANS_ADD = 122,
1968   MATOP_GET_MULTI_PROC_BLOCK     = 123,
1969   MATOP_FIND_NONZERO_ROWS        = 124,
1970   MATOP_GET_COLUMN_NORMS         = 125,
1971   MATOP_INVERT_BLOCK_DIAGONAL    = 126,
1972   MATOP_INVERT_VBLOCK_DIAGONAL   = 127,
1973   MATOP_CREATE_SUB_MATRICES_MPI  = 128,
1974   MATOP_SET_VALUES_BATCH         = 129,
1975   /* MATOP_PLACEHOLDER_130=130, */
1976   MATOP_TRANSPOSE_MAT_MULT_SYMBO = 131,
1977   MATOP_TRANSPOSE_MAT_MULT_NUMER = 132,
1978   MATOP_TRANSPOSE_COLORING_CREAT = 133,
1979   MATOP_TRANS_COLORING_APPLY_SPT = 134,
1980   MATOP_TRANS_COLORING_APPLY_DEN = 135,
1981   /* MATOP_PLACEHOLDER_136=136, */
1982   MATOP_RART_SYMBOLIC         = 137,
1983   MATOP_RART_NUMERIC          = 138,
1984   MATOP_SET_BLOCK_SIZES       = 139,
1985   MATOP_AYPX                  = 140,
1986   MATOP_RESIDUAL              = 141,
1987   MATOP_FDCOLORING_SETUP      = 142,
1988   MATOP_FIND_OFFBLOCK_ENTRIES = 143,
1989   MATOP_MPICONCATENATESEQ     = 144,
1990   MATOP_DESTROYSUBMATRICES    = 145,
1991   MATOP_TRANSPOSE_SOLVE       = 146,
1992   MATOP_GET_VALUES_LOCAL      = 147
1993 } MatOperation;
1994 PETSC_EXTERN PetscErrorCode MatSetOperation(Mat, MatOperation, void (*)(void));
1995 PETSC_EXTERN PetscErrorCode MatGetOperation(Mat, MatOperation, void (**)(void));
1996 PETSC_EXTERN PetscErrorCode MatHasOperation(Mat, MatOperation, PetscBool *);
1997 PETSC_EXTERN PetscErrorCode MatHasCongruentLayouts(Mat, PetscBool *);
1998 PETSC_DEPRECATED_FUNCTION(3, 14, 0, "MatProductClear()", ) static inline PetscErrorCode MatFreeIntermediateDataStructures(Mat A)
1999 {
2000   return MatProductClear(A);
2001 }
2002 PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat, MatOperation, void (*)(void));
2003 PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat, MatOperation, void (**)(void));
2004 PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat, void *);
2005 PETSC_EXTERN PetscErrorCode MatShellSetContextDestroy(Mat, PetscErrorCode (*)(void *));
2006 PETSC_EXTERN PetscErrorCode MatShellSetVecType(Mat, VecType);
2007 PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
2008 PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat, PetscErrorCode (*)(void *, Vec, Vec), Vec, void *, PetscBool *);
2009 PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat);
2010 PETSC_EXTERN PetscErrorCode MatShellSetMatProductOperation(Mat, MatProductType, PetscErrorCode (*)(Mat, Mat, Mat, void **), PetscErrorCode (*)(Mat, Mat, Mat, void *), PetscErrorCode (*)(void *), MatType, MatType);
2011 PETSC_EXTERN PetscErrorCode MatIsShell(Mat, PetscBool *);
2012 
2013 /*
2014    Codes for matrices stored on disk. By default they are
2015    stored in a universal format. By changing the format with
2016    PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will
2017    be stored in a way natural for the matrix, for example dense matrices
2018    would be stored as dense. Matrices stored this way may only be
2019    read into matrices of the same type.
2020 */
2021 #define MATRIX_BINARY_FORMAT_DENSE -1
2022 
2023 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat, PetscReal);
2024 
2025 PETSC_EXTERN PetscErrorCode MatISSetLocalMatType(Mat, MatType);
2026 PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]);
2027 PETSC_EXTERN PetscErrorCode MatISStoreL2L(Mat, PetscBool);
2028 PETSC_EXTERN PetscErrorCode MatISFixLocalEmpty(Mat, PetscBool);
2029 PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat, Mat *);
2030 PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat, Mat *);
2031 PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat, Mat);
2032 PETSC_EXTERN PetscErrorCode MatISGetLocalToGlobalMapping(Mat, ISLocalToGlobalMapping *, ISLocalToGlobalMapping *);
2033 PETSC_EXTERN PETSC_DEPRECATED_FUNCTION(3, 10, 0, "MatConvert()", ) PetscErrorCode MatISGetMPIXAIJ(Mat, MatReuse, Mat *);
2034 
2035 /*S
2036      MatNullSpace - Object that removes a null space from a vector, i.e.
2037          orthogonalizes the vector to a subspace
2038 
2039    Level: advanced
2040 
2041 .seealso: [](ch_matrices), `Mat`, `MatNullSpaceCreate()`, `MatNullSpaceSetFunction()`, `MatGetNullSpace()`, `MatSetNullSpace()`
2042 S*/
2043 typedef struct _p_MatNullSpace *MatNullSpace;
2044 
2045 PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm, PetscBool, PetscInt, const Vec[], MatNullSpace *);
2046 PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace, PetscErrorCode (*)(MatNullSpace, Vec, void *), void *);
2047 PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace *);
2048 PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace, Vec);
2049 PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *);
2050 PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *);
2051 PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat, MatNullSpace);
2052 PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat, MatNullSpace);
2053 PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat, MatNullSpace);
2054 PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat, MatNullSpace *);
2055 PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace, Mat, PetscBool *);
2056 PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace, PetscViewer);
2057 PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace, PetscBool *, PetscInt *, const Vec **);
2058 PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec, MatNullSpace *);
2059 
2060 PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat, IS);
2061 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat, PetscReal);
2062 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat, PetscInt *);
2063 
2064 PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat, PetscInt, Mat *);
2065 PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat, PetscInt, Mat *);
2066 PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat, Mat *);
2067 
2068 PETSC_EXTERN PetscErrorCode MatComputeOperator(Mat, MatType, Mat *);
2069 PETSC_EXTERN PetscErrorCode MatComputeOperatorTranspose(Mat, MatType, Mat *);
2070 
2071 PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperator()", ) static inline PetscErrorCode MatComputeExplicitOperator(Mat A, Mat *B)
2072 {
2073   return MatComputeOperator(A, PETSC_NULLPTR, B);
2074 }
2075 PETSC_DEPRECATED_FUNCTION(3, 12, 0, "MatComputeOperatorTranspose()", ) static inline PetscErrorCode MatComputeExplicitOperatorTranspose(Mat A, Mat *B)
2076 {
2077   return MatComputeOperatorTranspose(A, PETSC_NULLPTR, B);
2078 }
2079 
2080 PETSC_EXTERN PetscErrorCode MatCreateKAIJ(Mat, PetscInt, PetscInt, const PetscScalar[], const PetscScalar[], Mat *);
2081 PETSC_EXTERN PetscErrorCode MatKAIJGetAIJ(Mat, Mat *);
2082 PETSC_EXTERN PetscErrorCode MatKAIJGetS(Mat, PetscInt *, PetscInt *, PetscScalar **);
2083 PETSC_EXTERN PetscErrorCode MatKAIJGetSRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2084 PETSC_EXTERN PetscErrorCode MatKAIJRestoreS(Mat, PetscScalar **);
2085 PETSC_EXTERN PetscErrorCode MatKAIJRestoreSRead(Mat, const PetscScalar **);
2086 PETSC_EXTERN PetscErrorCode MatKAIJGetT(Mat, PetscInt *, PetscInt *, PetscScalar **);
2087 PETSC_EXTERN PetscErrorCode MatKAIJGetTRead(Mat, PetscInt *, PetscInt *, const PetscScalar **);
2088 PETSC_EXTERN PetscErrorCode MatKAIJRestoreT(Mat, PetscScalar **);
2089 PETSC_EXTERN PetscErrorCode MatKAIJRestoreTRead(Mat, const PetscScalar **);
2090 PETSC_EXTERN PetscErrorCode MatKAIJSetAIJ(Mat, Mat);
2091 PETSC_EXTERN PetscErrorCode MatKAIJSetS(Mat, PetscInt, PetscInt, const PetscScalar[]);
2092 PETSC_EXTERN PetscErrorCode MatKAIJSetT(Mat, PetscInt, PetscInt, const PetscScalar[]);
2093 PETSC_EXTERN PetscErrorCode MatKAIJGetScaledIdentity(Mat, PetscBool *);
2094 
2095 PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat, Vec);
2096 
2097 PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2098 PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat, Vec, Vec);
2099 PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat, PetscErrorCode (*)(void *, Vec, Vec), void *);
2100 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat, PetscErrorCode (*)(void *, PetscInt, Vec, PetscScalar *));
2101 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat, PetscErrorCode (*)(void *, Vec));
2102 PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat, PetscScalar[], PetscInt);
2103 PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat);
2104 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat, PetscReal);
2105 PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat, PetscInt);
2106 PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat, PetscScalar *);
2107 PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat, const char[]);
2108 PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void *, Vec, Vec, PetscScalar *);
2109 PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat, PetscErrorCode (*)(void *, Vec, Vec, PetscScalar *), void *);
2110 
2111 /*S
2112     MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free
2113               Jacobian vector products
2114 
2115     Level: developer
2116 
2117     Notes:
2118     `MATMFFD` is a specific `MatType` which uses the `MatMFFD` data structure
2119 
2120      MatMFFD*() methods actually take the `Mat` as their first argument. Not a `MatMFFD` data structure
2121 
2122     This functionality is often obtained using `MatCreateSNESMF()` or with `SNES` solvers using `-snes_mf` or `-snes_mf_operator`
2123 
2124 .seealso: [](ch_matrices), `MatMFFDType`, `MATMFFD`, `MatCreateMFFD()`, `MatMFFDSetFuction()`, `MatMFFDSetType()`, `MatMFFDRegister()`,
2125           `MatCreateSNESMF()`, `SNES`, `-snes_mf`, `-snes_mf_operator`
2126 S*/
2127 typedef struct _p_MatMFFD *MatMFFD;
2128 
2129 /*J
2130     MatMFFDType - algorithm used to compute the `h` used in computing matrix-vector products via differencing of a function
2131 
2132    Values:
2133 +   `MATMFFD_DS` - an algorithm described by Dennis and Schnabel
2134 -   `MATMFFD_WP` - the Walker-Pernice strategy.
2135 
2136    Level: beginner
2137 
2138 .seealso: [](ch_matrices), `MatMFFDSetType()`, `MatMFFDRegister()`, `MatMFFDSetFunction()`, `MatCreateMFFD()`
2139 J*/
2140 typedef const char *MatMFFDType;
2141 #define MATMFFD_DS "ds"
2142 #define MATMFFD_WP "wp"
2143 
2144 PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat, MatMFFDType);
2145 PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[], PetscErrorCode (*)(MatMFFD));
2146 
2147 PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat, PetscReal);
2148 PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat, PetscBool);
2149 
2150 PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring, MatMFFDType);
2151 
2152 PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *);
2153 PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *);
2154 
2155 #ifdef PETSC_HAVE_H2OPUS
2156 PETSC_EXTERN_TYPEDEF typedef PetscScalar (*MatH2OpusKernel)(PetscInt, PetscReal[], PetscReal[], void *);
2157 PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernel, void *, PetscReal, PetscInt, PetscInt, Mat *);
2158 PETSC_EXTERN PetscErrorCode MatCreateH2OpusFromMat(Mat, PetscInt, const PetscReal[], PetscBool, PetscReal, PetscInt, PetscInt, PetscInt, PetscReal, Mat *);
2159 PETSC_EXTERN PetscErrorCode MatH2OpusSetSamplingMat(Mat, Mat, PetscInt, PetscReal);
2160 PETSC_EXTERN PetscErrorCode MatH2OpusOrthogonalize(Mat);
2161 PETSC_EXTERN PetscErrorCode MatH2OpusCompress(Mat, PetscReal);
2162 PETSC_EXTERN PetscErrorCode MatH2OpusSetNativeMult(Mat, PetscBool);
2163 PETSC_EXTERN PetscErrorCode MatH2OpusGetNativeMult(Mat, PetscBool *);
2164 PETSC_EXTERN PetscErrorCode MatH2OpusGetIndexMap(Mat, IS *);
2165 PETSC_EXTERN PetscErrorCode MatH2OpusMapVec(Mat, PetscBool, Vec, Vec *);
2166 PETSC_EXTERN PetscErrorCode MatH2OpusLowRankUpdate(Mat, Mat, Mat, PetscScalar);
2167 #endif
2168 
2169 #ifdef PETSC_HAVE_HTOOL
2170 PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*MatHtoolKernel)(PetscInt, PetscInt, PetscInt, const PetscInt *, const PetscInt *, PetscScalar *, void *);
2171 PETSC_EXTERN PetscErrorCode MatCreateHtoolFromKernel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscReal[], const PetscReal[], MatHtoolKernel, void *, Mat *);
2172 PETSC_EXTERN PetscErrorCode MatHtoolSetKernel(Mat, MatHtoolKernel, void *);
2173 PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationSource(Mat, IS *);
2174 PETSC_EXTERN PetscErrorCode MatHtoolGetPermutationTarget(Mat, IS *);
2175 PETSC_EXTERN PetscErrorCode MatHtoolUsePermutation(Mat, PetscBool);
2176 
2177 /*E
2178      MatHtoolCompressorType - Indicates the type of compressor used by a `MATHTOOL`
2179 
2180     Values:
2181 +   `MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA` (default) - symmetric partial adaptive cross approximation
2182 .   `MAT_HTOOL_COMPRESSOR_FULL_ACA` - full adaptive cross approximation
2183 -   `MAT_HTOOL_COMPRESSOR_SVD` - singular value decomposition
2184 
2185    Level: intermediate
2186 
2187 .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolClusteringType`
2188 E*/
2189 typedef enum {
2190   MAT_HTOOL_COMPRESSOR_SYMPARTIAL_ACA,
2191   MAT_HTOOL_COMPRESSOR_FULL_ACA,
2192   MAT_HTOOL_COMPRESSOR_SVD
2193 } MatHtoolCompressorType;
2194 
2195 /*E
2196      MatHtoolClusteringType - Indicates the type of clustering used by a `MATHTOOL`
2197 
2198     Values:
2199 +   `MAT_HTOOL_CLUSTERING_PCA_REGULAR` (default) - axis computed via principle component analysis, split uniformly
2200 .   `MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC` - axis computed via principle component analysis, split barycentrically
2201 .   `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR` - axis along the largest extent of the bounding box, split uniformly
2202 -   `MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC` - axis along the largest extent of the bounding box, split barycentrically
2203 
2204    Level: intermediate
2205 
2206     Note:
2207     Higher-dimensional clustering is not yet supported in Htool, but once it is, one should add BOUNDING_BOX_{2,3} types
2208 
2209 .seealso: [](ch_matrices), `Mat`, `MatCreateHtoolFromKernel()`, `MATHTOOL`, `MatHtoolCompressorType`
2210 E*/
2211 typedef enum {
2212   MAT_HTOOL_CLUSTERING_PCA_REGULAR,
2213   MAT_HTOOL_CLUSTERING_PCA_GEOMETRIC,
2214   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_REGULAR,
2215   MAT_HTOOL_CLUSTERING_BOUNDING_BOX_1_GEOMETRIC
2216 } MatHtoolClusteringType;
2217 #endif
2218 
2219 #ifdef PETSC_HAVE_MUMPS
2220 PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat, PetscInt, PetscInt);
2221 PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat, PetscInt, PetscInt *);
2222 PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat, PetscInt, PetscReal);
2223 PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat, PetscInt, PetscReal *);
2224 
2225 PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat, PetscInt, PetscInt *);
2226 PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat, PetscInt, PetscInt *);
2227 PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat, PetscInt, PetscReal *);
2228 PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat, PetscInt, PetscReal *);
2229 PETSC_EXTERN PetscErrorCode MatMumpsGetNullPivots(Mat, PetscInt *, PetscInt **);
2230 PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat, Mat);
2231 PETSC_EXTERN PetscErrorCode MatMumpsGetInverseTranspose(Mat, Mat);
2232 #endif
2233 
2234 #ifdef PETSC_HAVE_MKL_PARDISO
2235 PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat, PetscInt, PetscInt);
2236 #endif
2237 
2238 #ifdef PETSC_HAVE_MKL_CPARDISO
2239 PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat, PetscInt, PetscInt);
2240 #endif
2241 
2242 #ifdef PETSC_HAVE_SUPERLU
2243 PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat, PetscReal);
2244 #endif
2245 
2246 #ifdef PETSC_HAVE_SUPERLU_DIST
2247 PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat, PetscScalar *);
2248 #endif
2249 
2250 #ifdef PETSC_HAVE_STRUMPACK
2251 /*E
2252     MatSTRUMPACKReordering - sparsity reducing ordering to be used in `MATSOLVERSTRUMPACK``
2253 
2254     Values:
2255 +  `MAT_STRUMPACK_NATURAL` - use the current ordering
2256 .  `MAT_STRUMPACK_METIS` - use MeTis to compute an ordering
2257 .  `MAT_STRUMPACK_PARMETIS` - use ParMeTis to compute an ordering
2258 .  `MAT_STRUMPACK_SCOTCH` - use Scotch to compute an ordering
2259 .  `MAT_STRUMPACK_PTSCOTCH` - use parallel Scotch to compute an ordering
2260 -  `MAT_STRUMPACK_RCM` - use an RCM ordering
2261 
2262     Level: intermediate
2263 
2264     Developer Note:
2265     Should be called `MatSTRUMPACKReorderingType`
2266 
2267 .seealso: `Mat`, `MATSOLVERSTRUMPACK`, `MatGetFactor()`, `MatSTRUMPACKSetHSSRelTol()`, `MatSTRUMPACKSetReordering()`
2268 E*/
2269 typedef enum {
2270   MAT_STRUMPACK_NATURAL  = 0,
2271   MAT_STRUMPACK_METIS    = 1,
2272   MAT_STRUMPACK_PARMETIS = 2,
2273   MAT_STRUMPACK_SCOTCH   = 3,
2274   MAT_STRUMPACK_PTSCOTCH = 4,
2275   MAT_STRUMPACK_RCM      = 5
2276 } MatSTRUMPACKReordering;
2277 
2278 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat, MatSTRUMPACKReordering);
2279 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat, PetscBool);
2280 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSRelTol(Mat, PetscReal);
2281 PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSTRUMPACKSetHSSRelTol()", ) static inline PetscErrorCode MatSTRUMPACKSetHSSRelCompTol(Mat mat, PetscReal rtol)
2282 {
2283   return MatSTRUMPACKSetHSSRelTol(mat, rtol);
2284 }
2285 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSAbsTol(Mat, PetscReal);
2286 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMinSepSize(Mat, PetscInt);
2287 PETSC_DEPRECATED_FUNCTION(3, 9, 0, "MatSTRUMPACKSetHSSMinSepSize()", ) static inline PetscErrorCode MatSTRUMPACKSetHSSMinSize(Mat mat, PetscInt hssminsize)
2288 {
2289   return MatSTRUMPACKSetHSSMinSepSize(mat, hssminsize);
2290 }
2291 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMaxRank(Mat, PetscInt);
2292 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSLeafSize(Mat, PetscInt);
2293 #endif
2294 
2295 PETSC_EXTERN PetscErrorCode MatBindToCPU(Mat, PetscBool);
2296 PETSC_EXTERN PetscErrorCode MatBoundToCPU(Mat, PetscBool *);
2297 PETSC_DEPRECATED_FUNCTION(3, 13, 0, "MatBindToCPU()", ) static inline PetscErrorCode MatPinToCPU(Mat A, PetscBool flg)
2298 {
2299   return MatBindToCPU(A, flg);
2300 }
2301 PETSC_EXTERN PetscErrorCode MatSetBindingPropagates(Mat, PetscBool);
2302 PETSC_EXTERN PetscErrorCode MatGetBindingPropagates(Mat, PetscBool *);
2303 
2304 #ifdef PETSC_HAVE_CUDA
2305 /*E
2306     MatCUSPARSEStorageFormat - indicates the storage format for `MATAIJCUSPARSE` (GPU)
2307     matrices.
2308 
2309     Values:
2310 +   `MAT_CUSPARSE_CSR` - Compressed Sparse Row
2311 .   `MAT_CUSPARSE_ELL` - Ellpack (requires CUDA 4.2 or later).
2312 -   `MAT_CUSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later).
2313 
2314     Level: intermediate
2315 
2316 .seealso: [](ch_matrices), `MATAIJCUSPARSE`, `MatCUSPARSESetFormat()`, `MatCUSPARSEFormatOperation`
2317 E*/
2318 
2319 typedef enum {
2320   MAT_CUSPARSE_CSR,
2321   MAT_CUSPARSE_ELL,
2322   MAT_CUSPARSE_HYB
2323 } MatCUSPARSEStorageFormat;
2324 
2325 /* these will be strings associated with enumerated type defined above */
2326 PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[];
2327 
2328 /*E
2329     MatCUSPARSEFormatOperation - indicates the operation of `MATAIJCUSPARSE` (GPU)
2330     matrices whose operation should use a particular storage format.
2331 
2332     Values:
2333 +   `MAT_CUSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel MatMult
2334 .   `MAT_CUSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel MatMult
2335 .   `MAT_CUSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) MatMult
2336 -   `MAT_CUSPARSE_ALL` - sets the storage format for all `MATAIJCUSPARSE` (GPU) matrices
2337 
2338     Level: intermediate
2339 
2340 .seealso: [](ch_matrices), `MatCUSPARSESetFormat()`, `MatCUSPARSEStorageFormat`
2341 E*/
2342 typedef enum {
2343   MAT_CUSPARSE_MULT_DIAG,
2344   MAT_CUSPARSE_MULT_OFFDIAG,
2345   MAT_CUSPARSE_MULT,
2346   MAT_CUSPARSE_ALL
2347 } MatCUSPARSEFormatOperation;
2348 
2349 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2350 PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2351 PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat, MatCUSPARSEFormatOperation, MatCUSPARSEStorageFormat);
2352 PETSC_EXTERN PetscErrorCode MatCUSPARSESetUseCPUSolve(Mat, PetscBool);
2353 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
2354 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
2355 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayRead(Mat, const PetscScalar **);
2356 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayRead(Mat, const PetscScalar **);
2357 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArrayWrite(Mat, PetscScalar **);
2358 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArrayWrite(Mat, PetscScalar **);
2359 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSEGetArray(Mat, PetscScalar **);
2360 PETSC_EXTERN PetscErrorCode MatSeqAIJCUSPARSERestoreArray(Mat, PetscScalar **);
2361 
2362 PETSC_EXTERN PetscErrorCode MatCreateDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
2363 PETSC_EXTERN PetscErrorCode MatCreateSeqDenseCUDA(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
2364 PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayWrite(Mat, PetscScalar **);
2365 PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArrayRead(Mat, const PetscScalar **);
2366 PETSC_EXTERN PetscErrorCode MatDenseCUDAGetArray(Mat, PetscScalar **);
2367 PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat, PetscScalar **);
2368 PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArrayRead(Mat, const PetscScalar **);
2369 PETSC_EXTERN PetscErrorCode MatDenseCUDARestoreArray(Mat, PetscScalar **);
2370 PETSC_EXTERN PetscErrorCode MatDenseCUDAPlaceArray(Mat, const PetscScalar *);
2371 PETSC_EXTERN PetscErrorCode MatDenseCUDAReplaceArray(Mat, const PetscScalar *);
2372 PETSC_EXTERN PetscErrorCode MatDenseCUDAResetArray(Mat);
2373 PETSC_EXTERN PetscErrorCode MatDenseCUDASetPreallocation(Mat, PetscScalar *);
2374 
2375 PETSC_EXTERN PetscErrorCode MatCreateSeqSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2376 PETSC_EXTERN PetscErrorCode MatCreateSELLCUDA(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2377 #endif
2378 
2379 #ifdef PETSC_HAVE_HIP
2380 /*E
2381     MatHIPSPARSEStorageFormat - indicates the storage format for `MATAIJHIPSPARSE` (GPU)
2382     matrices.
2383 
2384     Values:
2385 +   `MAT_HIPSPARSE_CSR` - Compressed Sparse Row
2386 .   `MAT_HIPSPARSE_ELL` - Ellpack
2387 -   `MAT_HIPSPARSE_HYB` - Hybrid, a combination of Ellpack and Coordinate format
2388 
2389     Level: intermediate
2390 
2391 .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEFormatOperation`
2392 E*/
2393 
2394 typedef enum {
2395   MAT_HIPSPARSE_CSR,
2396   MAT_HIPSPARSE_ELL,
2397   MAT_HIPSPARSE_HYB
2398 } MatHIPSPARSEStorageFormat;
2399 
2400 /* these will be strings associated with enumerated type defined above */
2401 PETSC_EXTERN const char *const MatHIPSPARSEStorageFormats[];
2402 
2403 /*E
2404     MatHIPSPARSEFormatOperation - indicates the operation of `MATAIJHIPSPARSE` (GPU)
2405     matrices whose operation should use a particular storage format.
2406 
2407     Values:
2408 +   `MAT_HIPSPARSE_MULT_DIAG` - sets the storage format for the diagonal matrix in the parallel `MatMult()`
2409 .   `MAT_HIPSPARSE_MULT_OFFDIAG` - sets the storage format for the offdiagonal matrix in the parallel `MatMult()`
2410 .   `MAT_HIPSPARSE_MULT` - sets the storage format for the entire matrix in the serial (single GPU) `MatMult()`
2411 -   `MAT_HIPSPARSE_ALL` - sets the storage format for all HIPSPARSE (GPU) matrices
2412 
2413     Level: intermediate
2414 
2415 .seealso: [](ch_matrices), `MatHIPSPARSESetFormat()`, `MatHIPSPARSEStorageFormat`
2416 E*/
2417 typedef enum {
2418   MAT_HIPSPARSE_MULT_DIAG,
2419   MAT_HIPSPARSE_MULT_OFFDIAG,
2420   MAT_HIPSPARSE_MULT,
2421   MAT_HIPSPARSE_ALL
2422 } MatHIPSPARSEFormatOperation;
2423 
2424 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2425 PETSC_EXTERN PetscErrorCode MatCreateAIJHIPSPARSE(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2426 PETSC_EXTERN PetscErrorCode MatHIPSPARSESetFormat(Mat, MatHIPSPARSEFormatOperation, MatHIPSPARSEStorageFormat);
2427 PETSC_EXTERN PetscErrorCode MatHIPSPARSESetUseCPUSolve(Mat, PetscBool);
2428 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetIJ(Mat, PetscBool, const int **, const int **);
2429 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreIJ(Mat, PetscBool, const int **, const int **);
2430 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayRead(Mat, const PetscScalar **);
2431 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayRead(Mat, const PetscScalar **);
2432 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArrayWrite(Mat, PetscScalar **);
2433 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArrayWrite(Mat, PetscScalar **);
2434 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSEGetArray(Mat, PetscScalar **);
2435 PETSC_EXTERN PetscErrorCode MatSeqAIJHIPSPARSERestoreArray(Mat, PetscScalar **);
2436 
2437 PETSC_EXTERN PetscErrorCode MatCreateDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar[], Mat *);
2438 PETSC_EXTERN PetscErrorCode MatCreateSeqDenseHIP(MPI_Comm, PetscInt, PetscInt, PetscScalar[], Mat *);
2439 PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayWrite(Mat, PetscScalar **);
2440 PETSC_EXTERN PetscErrorCode MatDenseHIPGetArrayRead(Mat, const PetscScalar **);
2441 PETSC_EXTERN PetscErrorCode MatDenseHIPGetArray(Mat, PetscScalar **);
2442 PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayWrite(Mat, PetscScalar **);
2443 PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArrayRead(Mat, const PetscScalar **);
2444 PETSC_EXTERN PetscErrorCode MatDenseHIPRestoreArray(Mat, PetscScalar **);
2445 PETSC_EXTERN PetscErrorCode MatDenseHIPPlaceArray(Mat, const PetscScalar *);
2446 PETSC_EXTERN PetscErrorCode MatDenseHIPReplaceArray(Mat, const PetscScalar *);
2447 PETSC_EXTERN PetscErrorCode MatDenseHIPResetArray(Mat);
2448 PETSC_EXTERN PetscErrorCode MatDenseHIPSetPreallocation(Mat, PetscScalar *);
2449 #endif
2450 
2451 #if defined(PETSC_HAVE_VIENNACL)
2452 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, const PetscInt[], Mat *);
2453 PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[], Mat *);
2454 #endif
2455 
2456 #if defined(PETSC_HAVE_FFTW)
2457 PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat, Vec, Vec);
2458 PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat, Vec, Vec);
2459 PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat, Vec *, Vec *, Vec *);
2460 #endif
2461 
2462 #if defined(PETSC_HAVE_SCALAPACK)
2463 PETSC_EXTERN PetscErrorCode MatCreateScaLAPACK(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, Mat *);
2464 PETSC_EXTERN PetscErrorCode MatScaLAPACKSetBlockSizes(Mat, PetscInt, PetscInt);
2465 PETSC_EXTERN PetscErrorCode MatScaLAPACKGetBlockSizes(Mat, PetscInt *, PetscInt *);
2466 #endif
2467 
2468 PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm, PetscInt, const IS[], PetscInt, const IS[], const Mat[], Mat *);
2469 PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat, PetscInt *, PetscInt *);
2470 PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat, IS[], IS[]);
2471 PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat, IS[], IS[]);
2472 PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat, PetscInt *, PetscInt *, Mat ***);
2473 PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat, PetscInt, PetscInt, Mat *);
2474 PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat, VecType);
2475 PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat, PetscInt, const IS[], PetscInt, const IS[], const Mat[]);
2476 PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat, PetscInt, PetscInt, Mat);
2477 
2478 PETSC_EXTERN PetscErrorCode MatFilter(Mat, PetscReal, PetscBool, PetscBool);
2479 PETSC_DEPRECATED_FUNCTION(3, 20, 0, "MatFilter()", ) static inline PetscErrorCode MatChop(Mat A, PetscReal tol)
2480 {
2481   return MatFilter(A, tol, PETSC_FALSE, PETSC_FALSE);
2482 }
2483 PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat, PetscReal, PetscInt *);
2484 
2485 PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat, PetscInt, PetscInt *, IS **);
2486 
2487 PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat, PetscBool, Mat);
2488 
2489 PETSC_INTERN PetscErrorCode MatHeaderMerge(Mat, Mat *);
2490 PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat, Mat *);
2491 
2492 PETSC_EXTERN PetscErrorCode MatSeqAIJGetCSRAndMemType(Mat, const PetscInt **, const PetscInt **, PetscScalar **, PetscMemType *);
2493 
2494 PETSC_EXTERN PetscErrorCode MatCreateGraph(Mat, PetscBool, PetscBool, PetscReal, Mat *);
2495 PETSC_EXTERN PetscErrorCode MatEliminateZeros(Mat, PetscBool);
2496 
2497 PETSC_EXTERN PetscErrorCode MatCreateDenseFromVecType(MPI_Comm, VecType, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscScalar *, Mat *);
2498 #endif
2499