1 /* 2 Include file for the matrix component of PETSc 3 */ 4 #ifndef __PETSCMAT_H 5 #define __PETSCMAT_H 6 #include <petscvec.h> 7 8 /*S 9 Mat - Abstract PETSc matrix object used to manage all linear operators in PETSc, even those without 10 an explicit sparse representation (such as matrix-free operators) 11 12 Level: beginner 13 14 Concepts: matrix; linear operator 15 16 .seealso: MatCreate(), MatType, MatSetType(), MatDestroy() 17 S*/ 18 typedef struct _p_Mat* Mat; 19 20 /*J 21 MatType - String with the name of a PETSc matrix type 22 23 Level: beginner 24 25 .seealso: MatSetType(), Mat, MatSolverType, MatRegister() 26 J*/ 27 typedef const char* MatType; 28 #define MATSAME "same" 29 #define MATMAIJ "maij" 30 #define MATSEQMAIJ "seqmaij" 31 #define MATMPIMAIJ "mpimaij" 32 #define MATIS "is" 33 #define MATAIJ "aij" 34 #define MATSEQAIJ "seqaij" 35 #define MATMPIAIJ "mpiaij" 36 #define MATAIJCRL "aijcrl" 37 #define MATSEQAIJCRL "seqaijcrl" 38 #define MATMPIAIJCRL "mpiaijcrl" 39 #define MATAIJCUSPARSE "aijcusparse" 40 #define MATSEQAIJCUSPARSE "seqaijcusparse" 41 #define MATMPIAIJCUSPARSE "mpiaijcusparse" 42 #define MATAIJVIENNACL "aijviennacl" 43 #define MATSEQAIJVIENNACL "seqaijviennacl" 44 #define MATMPIAIJVIENNACL "mpiaijviennacl" 45 #define MATAIJPERM "aijperm" 46 #define MATSEQAIJPERM "seqaijperm" 47 #define MATMPIAIJPERM "mpiaijperm" 48 #define MATAIJMKL "aijmkl" 49 #define MATSEQAIJMKL "seqaijmkl" 50 #define MATMPIAIJMKL "mpiaijmkl" 51 #define MATBAIJMKL "baijmkl" 52 #define MATSEQBAIJMKL "seqbaijmkl" 53 #define MATMPIBAIJMKL "mpibaijmkl" 54 #define MATSHELL "shell" 55 #define MATDENSE "dense" 56 #define MATSEQDENSE "seqdense" 57 #define MATMPIDENSE "mpidense" 58 #define MATELEMENTAL "elemental" 59 #define MATBAIJ "baij" 60 #define MATSEQBAIJ "seqbaij" 61 #define MATMPIBAIJ "mpibaij" 62 #define MATMPIADJ "mpiadj" 63 #define MATSBAIJ "sbaij" 64 #define MATSEQSBAIJ "seqsbaij" 65 #define MATMPISBAIJ "mpisbaij" 66 #define MATDAAD "daad" 67 #define MATMFFD "mffd" 68 #define MATNORMAL "normal" 69 #define MATNORMALHERMITIAN "normalh" 70 #define MATLRC "lrc" 71 #define MATSCATTER "scatter" 72 #define MATBLOCKMAT "blockmat" 73 #define MATCOMPOSITE "composite" 74 #define MATFFT "fft" 75 #define MATFFTW "fftw" 76 #define MATSEQCUFFT "seqcufft" 77 #define MATTRANSPOSEMAT "transpose" 78 #define MATSCHURCOMPLEMENT "schurcomplement" 79 #define MATPYTHON "python" 80 #define MATHYPRE "hypre" 81 #define MATHYPRESTRUCT "hyprestruct" 82 #define MATHYPRESSTRUCT "hypresstruct" 83 #define MATSUBMATRIX "submatrix" 84 #define MATLOCALREF "localref" 85 #define MATNEST "nest" 86 #define MATPREALLOCATOR "preallocator" 87 #define MATSELL "sell" 88 #define MATSEQSELL "seqsell" 89 #define MATMPISELL "mpisell" 90 #define MATDUMMY "dummy" 91 92 /*J 93 MatSolverType - String with the name of a PETSc matrix solver type. 94 95 For example: "petsc" indicates what PETSc provides, "superlu_dist" the parallel SuperLU_DIST package etc 96 97 Level: beginner 98 99 .seealso: MatGetFactor(), Mat, MatSetType(), MatType 100 J*/ 101 typedef const char* MatSolverType; 102 #define MATSOLVERSUPERLU "superlu" 103 #define MATSOLVERSUPERLU_DIST "superlu_dist" 104 #define MATSOLVERSTRUMPACK "strumpack" 105 #define MATSOLVERUMFPACK "umfpack" 106 #define MATSOLVERCHOLMOD "cholmod" 107 #define MATSOLVERKLU "klu" 108 #define MATSOLVERSPARSEELEMENTAL "sparseelemental" 109 #define MATSOLVERELEMENTAL "elemental" 110 #define MATSOLVERESSL "essl" 111 #define MATSOLVERLUSOL "lusol" 112 #define MATSOLVERMUMPS "mumps" 113 #define MATSOLVERMKL_PARDISO "mkl_pardiso" 114 #define MATSOLVERMKL_CPARDISO "mkl_cpardiso" 115 #define MATSOLVERPASTIX "pastix" 116 #define MATSOLVERMATLAB "matlab" 117 #define MATSOLVERPETSC "petsc" 118 #define MATSOLVERBAS "bas" 119 #define MATSOLVERCUSPARSE "cusparse" 120 121 /*E 122 MatFactorType - indicates what type of factorization is requested 123 124 Level: beginner 125 126 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 127 128 .seealso: MatSolverType, MatGetFactor() 129 E*/ 130 typedef enum {MAT_FACTOR_NONE, MAT_FACTOR_LU, MAT_FACTOR_CHOLESKY, MAT_FACTOR_ILU, MAT_FACTOR_ICC,MAT_FACTOR_ILUDT} MatFactorType; 131 PETSC_EXTERN const char *const MatFactorTypes[]; 132 133 PETSC_EXTERN PetscErrorCode MatGetFactor(Mat,MatSolverType,MatFactorType,Mat*); 134 PETSC_EXTERN PetscErrorCode MatGetFactorAvailable(Mat,MatSolverType,MatFactorType,PetscBool *); 135 PETSC_EXTERN PetscErrorCode MatFactorGetSolverType(Mat,MatSolverType*); 136 PETSC_EXTERN PetscErrorCode MatGetFactorType(Mat,MatFactorType*); 137 PETSC_EXTERN PetscErrorCode MatSolverTypeRegister(MatSolverType,MatType,MatFactorType,PetscErrorCode(*)(Mat,MatFactorType,Mat*)); 138 PETSC_EXTERN PetscErrorCode MatSolverTypeGet(MatSolverType,MatType,MatFactorType,PetscBool*,PetscBool*,PetscErrorCode (**)(Mat,MatFactorType,Mat*)); 139 typedef MatSolverType MatSolverPackage PETSC_DEPRECATED("Use MatSolverType"); 140 PETSC_DEPRECATED("Use MatSolverTypeRegister()") PETSC_STATIC_INLINE PetscErrorCode MatSolverPackageRegister(MatSolverType stype,MatType mtype,MatFactorType ftype,PetscErrorCode(*f)(Mat,MatFactorType,Mat*)) 141 { return MatSolverTypeRegister(stype,mtype,ftype,f); } 142 PETSC_DEPRECATED("Use MatSolverTypeGet()") PETSC_STATIC_INLINE PetscErrorCode MatSolverPackageGet(MatSolverType stype,MatType mtype,MatFactorType ftype,PetscBool *foundmtype,PetscBool *foundstype,PetscErrorCode(**f)(Mat,MatFactorType,Mat*)) 143 { return MatSolverTypeGet(stype,mtype,ftype,foundmtype,foundstype,f); } 144 145 /* Logging support */ 146 #define MAT_FILE_CLASSID 1211216 /* used to indicate matrices in binary files */ 147 PETSC_EXTERN PetscClassId MAT_CLASSID; 148 PETSC_EXTERN PetscClassId MAT_COLORING_CLASSID; 149 PETSC_EXTERN PetscClassId MAT_FDCOLORING_CLASSID; 150 PETSC_EXTERN PetscClassId MAT_TRANSPOSECOLORING_CLASSID; 151 PETSC_EXTERN PetscClassId MAT_PARTITIONING_CLASSID; 152 PETSC_EXTERN PetscClassId MAT_COARSEN_CLASSID; 153 PETSC_EXTERN PetscClassId MAT_NULLSPACE_CLASSID; 154 PETSC_EXTERN PetscClassId MATMFFD_CLASSID; 155 156 /*E 157 MatReuse - Indicates if matrices obtained from a previous call to MatCreateSubMatrices(), MatCreateSubMatrix(), MatConvert() or several other functions 158 are to be reused to store the new matrix values. 159 160 $ MAT_INITIAL_MATRIX - create a new matrix 161 $ MAT_REUSE_MATRIX - reuse the matrix created with a previous call that used MAT_INITIAL_MATRIX 162 $ MAT_INPLACE_MATRIX - replace the first input matrix with the new matrix (not applicable to all functions) 163 $ MAT_IGNORE_MATRIX - do not create a new matrix or reuse a give matrix, just ignore that matrix argument (not applicable to all functions) 164 165 Level: beginner 166 167 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 168 169 .seealso: MatCreateSubMatrices(), MatCreateSubMatrix(), MatDestroyMatrices(), MatConvert() 170 E*/ 171 typedef enum {MAT_INITIAL_MATRIX,MAT_REUSE_MATRIX,MAT_IGNORE_MATRIX,MAT_INPLACE_MATRIX} MatReuse; 172 173 /*E 174 MatCreateSubMatrixOption - Indicates if matrices obtained from a call to MatCreateSubMatrices() 175 include the matrix values. Currently it is only used by MatGetSeqNonzerostructure(). 176 177 Level: beginner 178 179 .seealso: MatGetSeqNonzerostructure() 180 E*/ 181 typedef enum {MAT_DO_NOT_GET_VALUES,MAT_GET_VALUES} MatCreateSubMatrixOption; 182 183 PETSC_EXTERN PetscErrorCode MatInitializePackage(void); 184 185 PETSC_EXTERN PetscErrorCode MatCreate(MPI_Comm,Mat*); 186 PETSC_EXTERN PetscErrorCode MatSetSizes(Mat,PetscInt,PetscInt,PetscInt,PetscInt); 187 PETSC_EXTERN PetscErrorCode MatSetType(Mat,MatType); 188 PETSC_EXTERN PetscErrorCode MatSetFromOptions(Mat); 189 PETSC_STATIC_INLINE PetscErrorCode MatViewFromOptions(Mat A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);} 190 PETSC_EXTERN PetscErrorCode MatRegister(const char[],PetscErrorCode(*)(Mat)); 191 PETSC_EXTERN PetscErrorCode MatRegisterBaseName(const char[],const char[],const char[]); 192 PETSC_EXTERN PetscErrorCode MatSetOptionsPrefix(Mat,const char[]); 193 PETSC_EXTERN PetscErrorCode MatAppendOptionsPrefix(Mat,const char[]); 194 PETSC_EXTERN PetscErrorCode MatGetOptionsPrefix(Mat,const char*[]); 195 PETSC_EXTERN PetscErrorCode MatSetErrorIfFailure(Mat,PetscBool); 196 197 PETSC_EXTERN PetscFunctionList MatList; 198 PETSC_EXTERN PetscFunctionList MatColoringList; 199 PETSC_EXTERN PetscFunctionList MatPartitioningList; 200 201 /*E 202 MatStructure - Indicates if two matrices have the same nonzero structure 203 204 Level: beginner 205 206 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 207 208 .seealso: MatCopy(), MatAXPY() 209 E*/ 210 typedef enum {DIFFERENT_NONZERO_PATTERN,SUBSET_NONZERO_PATTERN,SAME_NONZERO_PATTERN} MatStructure; 211 212 #if defined PETSC_HAVE_MKL_SPARSE 213 PETSC_EXTERN PetscErrorCode MatCreateBAIJMKL(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 214 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJMKL(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A); 215 #endif 216 PETSC_EXTERN PetscErrorCode MatCreateSeqSELL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 217 PETSC_EXTERN PetscErrorCode MatCreateSELL(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 218 PETSC_EXTERN PetscErrorCode MatSeqSELLSetPreallocation(Mat,PetscInt,const PetscInt[]); 219 PETSC_EXTERN PetscErrorCode MatMPISELLSetPreallocation(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 220 221 PETSC_EXTERN PetscErrorCode MatCreateSeqDense(MPI_Comm,PetscInt,PetscInt,PetscScalar[],Mat*); 222 PETSC_EXTERN PetscErrorCode MatCreateDense(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscScalar[],Mat*); 223 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 224 PETSC_EXTERN PetscErrorCode MatCreateAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 225 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[],Mat *); 226 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],PetscInt[],PetscInt[],PetscScalar[],Mat*); 227 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm,Mat,Mat,const PetscInt[],Mat*); 228 229 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 230 PETSC_EXTERN PetscErrorCode MatCreateBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 231 PETSC_EXTERN PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[],Mat*); 232 233 PETSC_EXTERN PetscErrorCode MatCreateMPIAdj(MPI_Comm,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscInt[],Mat*); 234 PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 235 236 PETSC_EXTERN PetscErrorCode MatCreateSBAIJ(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 237 PETSC_EXTERN PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[],Mat *); 238 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 239 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 240 PETSC_EXTERN PetscErrorCode MatXAIJSetPreallocation(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscInt[],const PetscInt[]); 241 242 PETSC_EXTERN PetscErrorCode MatCreateShell(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,void *,Mat*); 243 PETSC_EXTERN PetscErrorCode MatCreateNormal(Mat,Mat*); 244 PETSC_EXTERN PetscErrorCode MatCreateNormalHermitian(Mat,Mat*); 245 PETSC_EXTERN PetscErrorCode MatCreateLRC(Mat,Mat,Vec,Mat,Mat*); 246 PETSC_EXTERN PetscErrorCode MatLRCGetMats(Mat,Mat*,Mat*,Vec*,Mat*); 247 PETSC_EXTERN PetscErrorCode MatCreateIS(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,ISLocalToGlobalMapping,ISLocalToGlobalMapping,Mat*); 248 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCRL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 249 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJCRL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 250 251 PETSC_EXTERN PetscErrorCode MatCreateScatter(MPI_Comm,VecScatter,Mat*); 252 PETSC_EXTERN PetscErrorCode MatScatterSetVecScatter(Mat,VecScatter); 253 PETSC_EXTERN PetscErrorCode MatScatterGetVecScatter(Mat,VecScatter*); 254 PETSC_EXTERN PetscErrorCode MatCreateBlockMat(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt*,Mat*); 255 PETSC_EXTERN PetscErrorCode MatCompositeAddMat(Mat,Mat); 256 PETSC_EXTERN PetscErrorCode MatCompositeMerge(Mat); 257 PETSC_EXTERN PetscErrorCode MatCreateComposite(MPI_Comm,PetscInt,const Mat*,Mat*); 258 typedef enum {MAT_COMPOSITE_ADDITIVE,MAT_COMPOSITE_MULTIPLICATIVE} MatCompositeType; 259 PETSC_EXTERN PetscErrorCode MatCompositeSetType(Mat,MatCompositeType); 260 261 PETSC_EXTERN PetscErrorCode MatCreateFFT(MPI_Comm,PetscInt,const PetscInt[],MatType,Mat*); 262 PETSC_EXTERN PetscErrorCode MatCreateSeqCUFFT(MPI_Comm,PetscInt,const PetscInt[],Mat*); 263 264 PETSC_EXTERN PetscErrorCode MatCreateTranspose(Mat,Mat*); 265 PETSC_EXTERN PetscErrorCode MatTransposeGetMat(Mat,Mat*); 266 PETSC_EXTERN PetscErrorCode MatCreateHermitianTranspose(Mat,Mat*); 267 PETSC_EXTERN PetscErrorCode MatCreateSubMatrixVirtual(Mat,IS,IS,Mat*); 268 PETSC_EXTERN PetscErrorCode MatSubMatrixVirtualUpdate(Mat,Mat,IS,IS); 269 PETSC_EXTERN PetscErrorCode MatCreateLocalRef(Mat,IS,IS,Mat*); 270 271 #if defined(PETSC_HAVE_HYPRE) 272 PETSC_EXTERN PetscErrorCode MatHYPRESetPreallocation(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 273 #endif 274 275 PETSC_EXTERN PetscErrorCode MatPythonSetType(Mat,const char[]); 276 277 PETSC_EXTERN PetscErrorCode MatResetPreallocation(Mat); 278 PETSC_EXTERN PetscErrorCode MatSetUp(Mat); 279 PETSC_EXTERN PetscErrorCode MatDestroy(Mat*); 280 PETSC_EXTERN PetscErrorCode MatGetNonzeroState(Mat,PetscObjectState*); 281 282 PETSC_EXTERN PetscErrorCode MatConjugate(Mat); 283 PETSC_EXTERN PetscErrorCode MatRealPart(Mat); 284 PETSC_EXTERN PetscErrorCode MatImaginaryPart(Mat); 285 PETSC_EXTERN PetscErrorCode MatGetDiagonalBlock(Mat,Mat*); 286 PETSC_EXTERN PetscErrorCode MatGetTrace(Mat,PetscScalar*); 287 PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonal(Mat,const PetscScalar **); 288 PETSC_EXTERN PetscErrorCode MatInvertBlockDiagonalMat(Mat,Mat); 289 290 /* ------------------------------------------------------------*/ 291 PETSC_EXTERN PetscErrorCode MatSetValues(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 292 PETSC_EXTERN PetscErrorCode MatSetValuesBlocked(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 293 PETSC_EXTERN PetscErrorCode MatSetValuesRow(Mat,PetscInt,const PetscScalar[]); 294 PETSC_EXTERN PetscErrorCode MatSetValuesRowLocal(Mat,PetscInt,const PetscScalar[]); 295 PETSC_EXTERN PetscErrorCode MatSetValuesBatch(Mat,PetscInt,PetscInt,PetscInt[],const PetscScalar[]); 296 PETSC_EXTERN PetscErrorCode MatSetRandom(Mat,PetscRandom); 297 298 /*S 299 MatStencil - Data structure (C struct) for storing information about a single row or 300 column of a matrix as indexed on an associated grid. These are arguments to MatSetStencil() and MatSetBlockStencil() 301 302 The i,j, and k represent the logical coordinates over the entire grid (for 2 and 1 dimensional problems the k and j entries are ignored). 303 The c represents the the degrees of freedom at each grid point (the dof argument to DMDASetDOF()). If dof is 1 then this entry is ignored. 304 305 For stencil access to vectors see DMDAVecGetArray(), DMDAVecGetArrayF90(). 306 307 Fortran usage is different, see MatSetValuesStencil() for details. 308 309 Level: beginner 310 311 Concepts: matrix; linear operator 312 313 .seealso: MatSetValuesStencil(), MatSetStencil(), MatSetValuesBlockedStencil(), DMDAVecGetArray(), DMDAVecGetArrayF90() 314 S*/ 315 typedef struct { 316 PetscInt k,j,i,c; 317 } MatStencil; 318 319 PETSC_EXTERN PetscErrorCode MatSetValuesStencil(Mat,PetscInt,const MatStencil[],PetscInt,const MatStencil[],const PetscScalar[],InsertMode); 320 PETSC_EXTERN PetscErrorCode MatSetValuesBlockedStencil(Mat,PetscInt,const MatStencil[],PetscInt,const MatStencil[],const PetscScalar[],InsertMode); 321 PETSC_EXTERN PetscErrorCode MatSetStencil(Mat,PetscInt,const PetscInt[],const PetscInt[],PetscInt); 322 323 /*E 324 MatAssemblyType - Indicates if the matrix is now to be used, or if you plan 325 to continue to add or insert values to it 326 327 Level: beginner 328 329 .seealso: MatAssemblyBegin(), MatAssemblyEnd() 330 E*/ 331 typedef enum {MAT_FLUSH_ASSEMBLY=1,MAT_FINAL_ASSEMBLY=0} MatAssemblyType; 332 PETSC_EXTERN PetscErrorCode MatAssemblyBegin(Mat,MatAssemblyType); 333 PETSC_EXTERN PetscErrorCode MatAssemblyEnd(Mat,MatAssemblyType); 334 PETSC_EXTERN PetscErrorCode MatAssembled(Mat,PetscBool *); 335 336 337 338 /*E 339 MatOption - Options that may be set for a matrix and its behavior or storage 340 341 Level: beginner 342 343 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 344 Any additions/changes here must also be made in src/mat/interface/dlregismat.c in MatOptions[] 345 346 Developer Notes: Entries that are negative need not be called collectively by all processes. 347 348 .seealso: MatSetOption() 349 E*/ 350 typedef enum {MAT_OPTION_MIN = -3, 351 MAT_UNUSED_NONZERO_LOCATION_ERR = -2, 352 MAT_ROW_ORIENTED = -1, 353 MAT_SYMMETRIC = 1, 354 MAT_STRUCTURALLY_SYMMETRIC = 2, 355 MAT_NEW_DIAGONALS = 3, 356 MAT_IGNORE_OFF_PROC_ENTRIES = 4, 357 MAT_USE_HASH_TABLE = 5, 358 MAT_KEEP_NONZERO_PATTERN = 6, 359 MAT_IGNORE_ZERO_ENTRIES = 7, 360 MAT_USE_INODES = 8, 361 MAT_HERMITIAN = 9, 362 MAT_SYMMETRY_ETERNAL = 10, 363 MAT_NEW_NONZERO_LOCATION_ERR = 11, 364 MAT_IGNORE_LOWER_TRIANGULAR = 12, 365 MAT_ERROR_LOWER_TRIANGULAR = 13, 366 MAT_GETROW_UPPERTRIANGULAR = 14, 367 MAT_SPD = 15, 368 MAT_NO_OFF_PROC_ZERO_ROWS = 16, 369 MAT_NO_OFF_PROC_ENTRIES = 17, 370 MAT_NEW_NONZERO_LOCATIONS = 18, 371 MAT_NEW_NONZERO_ALLOCATION_ERR = 19, 372 MAT_SUBSET_OFF_PROC_ENTRIES = 20, 373 MAT_SUBMAT_SINGLEIS = 21, 374 MAT_STRUCTURE_ONLY = 22, 375 MAT_OPTION_MAX = 23} MatOption; 376 377 PETSC_EXTERN const char *const *MatOptions; 378 PETSC_EXTERN PetscErrorCode MatSetOption(Mat,MatOption,PetscBool); 379 PETSC_EXTERN PetscErrorCode MatGetOption(Mat,MatOption,PetscBool*); 380 PETSC_EXTERN PetscErrorCode MatGetType(Mat,MatType*); 381 382 PETSC_EXTERN PetscErrorCode MatGetValues(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],PetscScalar[]); 383 PETSC_EXTERN PetscErrorCode MatGetRow(Mat,PetscInt,PetscInt *,const PetscInt *[],const PetscScalar*[]); 384 PETSC_EXTERN PetscErrorCode MatRestoreRow(Mat,PetscInt,PetscInt *,const PetscInt *[],const PetscScalar*[]); 385 PETSC_EXTERN PetscErrorCode MatGetRowUpperTriangular(Mat); 386 PETSC_EXTERN PetscErrorCode MatRestoreRowUpperTriangular(Mat); 387 PETSC_EXTERN PetscErrorCode MatGetColumnVector(Mat,Vec,PetscInt); 388 PETSC_EXTERN PetscErrorCode MatSeqAIJGetArray(Mat,PetscScalar *[]); 389 PETSC_EXTERN PetscErrorCode MatSeqAIJRestoreArray(Mat,PetscScalar *[]); 390 PETSC_EXTERN PetscErrorCode MatSeqAIJGetMaxRowNonzeros(Mat,PetscInt*); 391 PETSC_EXTERN PetscErrorCode MatSeqAIJSetValuesLocalFast(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 392 PETSC_EXTERN PetscErrorCode MatSeqAIJSetType(Mat,MatType); 393 PETSC_EXTERN PetscErrorCode MatSeqAIJRegister(const char[],PetscErrorCode (*)(Mat,MatType,MatReuse,Mat *)); 394 PETSC_EXTERN PetscFunctionList MatSeqAIJList; 395 PETSC_EXTERN PetscErrorCode MatSeqSBAIJGetArray(Mat,PetscScalar *[]); 396 PETSC_EXTERN PetscErrorCode MatSeqSBAIJRestoreArray(Mat,PetscScalar *[]); 397 PETSC_EXTERN PetscErrorCode MatDenseGetArray(Mat,PetscScalar *[]); 398 PETSC_EXTERN PetscErrorCode MatDenseRestoreArray(Mat,PetscScalar *[]); 399 PETSC_EXTERN PetscErrorCode MatDensePlaceArray(Mat,const PetscScalar[]); 400 PETSC_EXTERN PetscErrorCode MatDenseResetArray(Mat); 401 PETSC_EXTERN PetscErrorCode MatDenseGetArrayRead(Mat,const PetscScalar *[]); 402 PETSC_EXTERN PetscErrorCode MatDenseRestoreArrayRead(Mat,const PetscScalar *[]); 403 PETSC_EXTERN PetscErrorCode MatGetBlockSize(Mat,PetscInt *); 404 PETSC_EXTERN PetscErrorCode MatSetBlockSize(Mat,PetscInt); 405 PETSC_EXTERN PetscErrorCode MatGetBlockSizes(Mat,PetscInt *,PetscInt *); 406 PETSC_EXTERN PetscErrorCode MatSetBlockSizes(Mat,PetscInt,PetscInt); 407 PETSC_EXTERN PetscErrorCode MatSetBlockSizesFromMats(Mat,Mat,Mat); 408 PETSC_EXTERN PetscErrorCode MatDenseGetColumn(Mat,PetscInt,PetscScalar *[]); 409 PETSC_EXTERN PetscErrorCode MatDenseRestoreColumn(Mat,PetscScalar *[]); 410 411 PETSC_EXTERN PetscErrorCode MatMult(Mat,Vec,Vec); 412 PETSC_EXTERN PetscErrorCode MatMultDiagonalBlock(Mat,Vec,Vec); 413 PETSC_EXTERN PetscErrorCode MatMultAdd(Mat,Vec,Vec,Vec); 414 PETSC_EXTERN PetscErrorCode MatMultTranspose(Mat,Vec,Vec); 415 PETSC_EXTERN PetscErrorCode MatMultHermitianTranspose(Mat,Vec,Vec); 416 PETSC_EXTERN PetscErrorCode MatIsTranspose(Mat,Mat,PetscReal,PetscBool *); 417 PETSC_EXTERN PetscErrorCode MatIsHermitianTranspose(Mat,Mat,PetscReal,PetscBool *); 418 PETSC_EXTERN PetscErrorCode MatMultTransposeAdd(Mat,Vec,Vec,Vec); 419 PETSC_EXTERN PetscErrorCode MatMultHermitianTransposeAdd(Mat,Vec,Vec,Vec); 420 PETSC_EXTERN PetscErrorCode MatMultConstrained(Mat,Vec,Vec); 421 PETSC_EXTERN PetscErrorCode MatMultTransposeConstrained(Mat,Vec,Vec); 422 PETSC_EXTERN PetscErrorCode MatMatSolve(Mat,Mat,Mat); 423 PETSC_EXTERN PetscErrorCode MatMatSolveTranspose(Mat,Mat,Mat); 424 PETSC_EXTERN PetscErrorCode MatResidual(Mat,Vec,Vec,Vec); 425 426 /*E 427 MatDuplicateOption - Indicates if a duplicated sparse matrix should have 428 its numerical values copied over or just its nonzero structure. 429 430 Level: beginner 431 432 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 433 434 $ MAT_DO_NOT_COPY_VALUES - Create a matrix using the same nonzero pattern as the original matrix, 435 $ with zeros for the numerical values. 436 $ MAT_COPY_VALUES - Create a matrix with the same nonzero pattern as the original matrix 437 $ and with the same numerical values. 438 $ MAT_SHARE_NONZERO_PATTERN - Create a matrix that shares the nonzero structure with the previous matrix 439 $ and does not copy it, using zeros for the numerical values. The parent and 440 $ child matrices will share their index (i and j) arrays, and you cannot 441 $ insert new nonzero entries into either matrix. 442 443 Notes: Many matrix types (including SeqAIJ) do not support the MAT_SHARE_NONZERO_PATTERN optimization; in 444 this case the behavior is as if MAT_DO_NOT_COPY_VALUES has been specified. 445 446 .seealso: MatDuplicate() 447 E*/ 448 typedef enum {MAT_DO_NOT_COPY_VALUES,MAT_COPY_VALUES,MAT_SHARE_NONZERO_PATTERN} MatDuplicateOption; 449 450 PETSC_EXTERN PetscErrorCode MatConvert(Mat,MatType,MatReuse,Mat*); 451 PETSC_EXTERN PetscErrorCode MatDuplicate(Mat,MatDuplicateOption,Mat*); 452 453 454 PETSC_EXTERN PetscErrorCode MatCopy(Mat,Mat,MatStructure); 455 PETSC_EXTERN PetscErrorCode MatView(Mat,PetscViewer); 456 PETSC_EXTERN PetscErrorCode MatIsSymmetric(Mat,PetscReal,PetscBool *); 457 PETSC_EXTERN PetscErrorCode MatIsStructurallySymmetric(Mat,PetscBool *); 458 PETSC_EXTERN PetscErrorCode MatIsHermitian(Mat,PetscReal,PetscBool *); 459 PETSC_EXTERN PetscErrorCode MatIsSymmetricKnown(Mat,PetscBool *,PetscBool *); 460 PETSC_EXTERN PetscErrorCode MatIsHermitianKnown(Mat,PetscBool *,PetscBool *); 461 PETSC_EXTERN PetscErrorCode MatMissingDiagonal(Mat,PetscBool *,PetscInt *); 462 PETSC_EXTERN PetscErrorCode MatLoad(Mat, PetscViewer); 463 464 PETSC_EXTERN PetscErrorCode MatGetRowIJ(Mat,PetscInt,PetscBool ,PetscBool ,PetscInt*,const PetscInt *[],const PetscInt *[],PetscBool *); 465 PETSC_EXTERN PetscErrorCode MatRestoreRowIJ(Mat,PetscInt,PetscBool ,PetscBool ,PetscInt *,const PetscInt *[],const PetscInt *[],PetscBool *); 466 PETSC_EXTERN PetscErrorCode MatGetColumnIJ(Mat,PetscInt,PetscBool ,PetscBool ,PetscInt*,const PetscInt *[],const PetscInt *[],PetscBool *); 467 PETSC_EXTERN PetscErrorCode MatRestoreColumnIJ(Mat,PetscInt,PetscBool ,PetscBool ,PetscInt *,const PetscInt *[],const PetscInt *[],PetscBool *); 468 469 /*S 470 MatInfo - Context of matrix information, used with MatGetInfo() 471 472 In Fortran this is simply a double precision array of dimension MAT_INFO_SIZE 473 474 Level: intermediate 475 476 Concepts: matrix^nonzero information 477 478 .seealso: MatGetInfo(), MatInfoType 479 S*/ 480 typedef struct { 481 PetscLogDouble block_size; /* block size */ 482 PetscLogDouble nz_allocated,nz_used,nz_unneeded; /* number of nonzeros */ 483 PetscLogDouble memory; /* memory allocated */ 484 PetscLogDouble assemblies; /* number of matrix assemblies called */ 485 PetscLogDouble mallocs; /* number of mallocs during MatSetValues() */ 486 PetscLogDouble fill_ratio_given,fill_ratio_needed; /* fill ratio for LU/ILU */ 487 PetscLogDouble factor_mallocs; /* number of mallocs during factorization */ 488 } MatInfo; 489 490 /*E 491 MatInfoType - Indicates if you want information about the local part of the matrix, 492 the entire parallel matrix or the maximum over all the local parts. 493 494 Level: beginner 495 496 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 497 498 .seealso: MatGetInfo(), MatInfo 499 E*/ 500 typedef enum {MAT_LOCAL=1,MAT_GLOBAL_MAX=2,MAT_GLOBAL_SUM=3} MatInfoType; 501 PETSC_EXTERN PetscErrorCode MatGetInfo(Mat,MatInfoType,MatInfo*); 502 PETSC_EXTERN PetscErrorCode MatGetDiagonal(Mat,Vec); 503 PETSC_EXTERN PetscErrorCode MatGetRowMax(Mat,Vec,PetscInt[]); 504 PETSC_EXTERN PetscErrorCode MatGetRowMin(Mat,Vec,PetscInt[]); 505 PETSC_EXTERN PetscErrorCode MatGetRowMaxAbs(Mat,Vec,PetscInt[]); 506 PETSC_EXTERN PetscErrorCode MatGetRowMinAbs(Mat,Vec,PetscInt[]); 507 PETSC_EXTERN PetscErrorCode MatGetRowSum(Mat,Vec); 508 PETSC_EXTERN PetscErrorCode MatTranspose(Mat,MatReuse,Mat*); 509 PETSC_EXTERN PetscErrorCode MatHermitianTranspose(Mat,MatReuse,Mat*); 510 PETSC_EXTERN PetscErrorCode MatPermute(Mat,IS,IS,Mat*); 511 PETSC_EXTERN PetscErrorCode MatDiagonalScale(Mat,Vec,Vec); 512 PETSC_EXTERN PetscErrorCode MatDiagonalSet(Mat,Vec,InsertMode); 513 514 PETSC_EXTERN PetscErrorCode MatEqual(Mat,Mat,PetscBool*); 515 PETSC_EXTERN PetscErrorCode MatMultEqual(Mat,Mat,PetscInt,PetscBool*); 516 PETSC_EXTERN PetscErrorCode MatMultAddEqual(Mat,Mat,PetscInt,PetscBool*); 517 PETSC_EXTERN PetscErrorCode MatMultTransposeEqual(Mat,Mat,PetscInt,PetscBool*); 518 PETSC_EXTERN PetscErrorCode MatMultTransposeAddEqual(Mat,Mat,PetscInt,PetscBool*); 519 PETSC_EXTERN PetscErrorCode MatMatMultEqual(Mat,Mat,Mat,PetscInt,PetscBool*); 520 PETSC_EXTERN PetscErrorCode MatTransposeMatMultEqual(Mat,Mat,Mat,PetscInt,PetscBool*); 521 522 PETSC_EXTERN PetscErrorCode MatNorm(Mat,NormType,PetscReal*); 523 PETSC_EXTERN PetscErrorCode MatGetColumnNorms(Mat,NormType,PetscReal*); 524 PETSC_EXTERN PetscErrorCode MatZeroEntries(Mat); 525 PETSC_EXTERN PetscErrorCode MatZeroRows(Mat,PetscInt,const PetscInt [],PetscScalar,Vec,Vec); 526 PETSC_EXTERN PetscErrorCode MatZeroRowsIS(Mat,IS,PetscScalar,Vec,Vec); 527 PETSC_EXTERN PetscErrorCode MatZeroRowsStencil(Mat,PetscInt,const MatStencil [],PetscScalar,Vec,Vec); 528 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsStencil(Mat,PetscInt,const MatStencil[],PetscScalar,Vec,Vec); 529 PETSC_EXTERN PetscErrorCode MatZeroRowsColumns(Mat,PetscInt,const PetscInt [],PetscScalar,Vec,Vec); 530 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsIS(Mat,IS,PetscScalar,Vec,Vec); 531 532 PETSC_EXTERN PetscErrorCode MatGetSize(Mat,PetscInt*,PetscInt*); 533 PETSC_EXTERN PetscErrorCode MatGetLocalSize(Mat,PetscInt*,PetscInt*); 534 PETSC_EXTERN PetscErrorCode MatGetOwnershipRange(Mat,PetscInt*,PetscInt*); 535 PETSC_EXTERN PetscErrorCode MatGetOwnershipRanges(Mat,const PetscInt**); 536 PETSC_EXTERN PetscErrorCode MatGetOwnershipRangeColumn(Mat,PetscInt*,PetscInt*); 537 PETSC_EXTERN PetscErrorCode MatGetOwnershipRangesColumn(Mat,const PetscInt**); 538 PETSC_EXTERN PetscErrorCode MatGetOwnershipIS(Mat,IS*,IS*); 539 540 PETSC_EXTERN PetscErrorCode MatCreateSubMatrices(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 541 PETSC_DEPRECATED("Use MatCreateSubMatrices()") PETSC_STATIC_INLINE PetscErrorCode MatGetSubMatrices(Mat mat,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *submat[]) {return MatCreateSubMatrices(mat,n,irow,icol,scall,submat);} 542 PETSC_EXTERN PetscErrorCode MatCreateSubMatricesMPI(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 543 PETSC_DEPRECATED("Use MatCreateSubMatricesMPI()") PETSC_STATIC_INLINE PetscErrorCode MatGetSubMatricesMPI(Mat mat,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *submat[]) {return MatCreateSubMatricesMPI(mat,n,irow,icol,scall,submat);} 544 PETSC_EXTERN PetscErrorCode MatDestroyMatrices(PetscInt,Mat *[]); 545 PETSC_EXTERN PetscErrorCode MatDestroySubMatrices(PetscInt,Mat *[]); 546 PETSC_EXTERN PetscErrorCode MatCreateSubMatrix(Mat,IS,IS,MatReuse,Mat *); 547 PETSC_DEPRECATED("Use MatCreateSubMatrix()") PETSC_STATIC_INLINE PetscErrorCode MatGetSubMatrix(Mat mat,IS isrow,IS iscol,MatReuse cll,Mat *newmat) {return MatCreateSubMatrix(mat,isrow,iscol,cll,newmat);} 548 PETSC_EXTERN PetscErrorCode MatGetLocalSubMatrix(Mat,IS,IS,Mat*); 549 PETSC_EXTERN PetscErrorCode MatRestoreLocalSubMatrix(Mat,IS,IS,Mat*); 550 PETSC_EXTERN PetscErrorCode MatGetSeqNonzeroStructure(Mat,Mat*); 551 PETSC_EXTERN PetscErrorCode MatDestroySeqNonzeroStructure(Mat*); 552 553 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm,Mat,PetscInt,PetscInt,MatReuse,Mat*); 554 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm,Mat,PetscInt,PetscInt,Mat*); 555 PETSC_EXTERN PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat,Mat); 556 PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMat(Mat,MatReuse,Mat*); 557 PETSC_EXTERN PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat,MatReuse,IS*,IS*,Mat*); 558 PETSC_EXTERN PetscErrorCode MatGetBrowsOfAcols(Mat,Mat,MatReuse,IS*,IS*,Mat*); 559 PETSC_EXTERN PetscErrorCode MatGetGhosts(Mat, PetscInt *,const PetscInt *[]); 560 561 PETSC_EXTERN PetscErrorCode MatIncreaseOverlap(Mat,PetscInt,IS[],PetscInt); 562 PETSC_EXTERN PetscErrorCode MatIncreaseOverlapSplit(Mat mat,PetscInt n,IS is[],PetscInt ov); 563 PETSC_EXTERN PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat,PetscBool); 564 565 PETSC_EXTERN PetscErrorCode MatMatMult(Mat,Mat,MatReuse,PetscReal,Mat*); 566 PETSC_EXTERN PetscErrorCode MatMatMultSymbolic(Mat,Mat,PetscReal,Mat*); 567 PETSC_EXTERN PetscErrorCode MatMatMultNumeric(Mat,Mat,Mat); 568 569 PETSC_EXTERN PetscErrorCode MatMatMatMult(Mat,Mat,Mat,MatReuse,PetscReal,Mat*); 570 PETSC_EXTERN PetscErrorCode MatGalerkin(Mat,Mat,Mat,MatReuse,PetscReal,Mat*); 571 572 PETSC_EXTERN PetscErrorCode MatPtAP(Mat,Mat,MatReuse,PetscReal,Mat*); 573 PETSC_EXTERN PetscErrorCode MatPtAPSymbolic(Mat,Mat,PetscReal,Mat*); 574 PETSC_EXTERN PetscErrorCode MatPtAPNumeric(Mat,Mat,Mat); 575 PETSC_EXTERN PetscErrorCode MatRARt(Mat,Mat,MatReuse,PetscReal,Mat*); 576 PETSC_EXTERN PetscErrorCode MatRARtSymbolic(Mat,Mat,PetscReal,Mat*); 577 PETSC_EXTERN PetscErrorCode MatRARtNumeric(Mat,Mat,Mat); 578 579 PETSC_EXTERN PetscErrorCode MatTransposeMatMult(Mat,Mat,MatReuse,PetscReal,Mat*); 580 PETSC_EXTERN PetscErrorCode MatTransposetMatMultSymbolic(Mat,Mat,PetscReal,Mat*); 581 PETSC_EXTERN PetscErrorCode MatTransposetMatMultNumeric(Mat,Mat,Mat); 582 PETSC_EXTERN PetscErrorCode MatMatTransposeMult(Mat,Mat,MatReuse,PetscReal,Mat*); 583 PETSC_EXTERN PetscErrorCode MatMatTransposeMultSymbolic(Mat,Mat,PetscReal,Mat*); 584 PETSC_EXTERN PetscErrorCode MatMatTransposeMultNumeric(Mat,Mat,Mat); 585 586 PETSC_EXTERN PetscErrorCode MatAXPY(Mat,PetscScalar,Mat,MatStructure); 587 PETSC_EXTERN PetscErrorCode MatAYPX(Mat,PetscScalar,Mat,MatStructure); 588 589 PETSC_EXTERN PetscErrorCode MatScale(Mat,PetscScalar); 590 PETSC_EXTERN PetscErrorCode MatShift(Mat,PetscScalar); 591 592 PETSC_EXTERN PetscErrorCode MatSetLocalToGlobalMapping(Mat,ISLocalToGlobalMapping,ISLocalToGlobalMapping); 593 PETSC_EXTERN PetscErrorCode MatGetLocalToGlobalMapping(Mat,ISLocalToGlobalMapping*,ISLocalToGlobalMapping*); 594 PETSC_EXTERN PetscErrorCode MatGetLayouts(Mat,PetscLayout*,PetscLayout*); 595 PETSC_EXTERN PetscErrorCode MatZeroRowsLocal(Mat,PetscInt,const PetscInt [],PetscScalar,Vec,Vec); 596 PETSC_EXTERN PetscErrorCode MatZeroRowsLocalIS(Mat,IS,PetscScalar,Vec,Vec); 597 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocal(Mat,PetscInt,const PetscInt [],PetscScalar,Vec,Vec); 598 PETSC_EXTERN PetscErrorCode MatZeroRowsColumnsLocalIS(Mat,IS,PetscScalar,Vec,Vec); 599 PETSC_EXTERN PetscErrorCode MatSetValuesLocal(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 600 PETSC_EXTERN PetscErrorCode MatSetValuesBlockedLocal(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 601 602 PETSC_EXTERN PetscErrorCode MatStashSetInitialSize(Mat,PetscInt,PetscInt); 603 PETSC_EXTERN PetscErrorCode MatStashGetInfo(Mat,PetscInt*,PetscInt*,PetscInt*,PetscInt*); 604 605 PETSC_EXTERN PetscErrorCode MatInterpolate(Mat,Vec,Vec); 606 PETSC_EXTERN PetscErrorCode MatInterpolateAdd(Mat,Vec,Vec,Vec); 607 PETSC_EXTERN PetscErrorCode MatRestrict(Mat,Vec,Vec); 608 PETSC_EXTERN PetscErrorCode MatCreateVecs(Mat,Vec*,Vec*); 609 PETSC_DEPRECATED("Use MatCreateVecs()") PETSC_STATIC_INLINE PetscErrorCode MatGetVecs(Mat mat,Vec *x,Vec *y) {return MatCreateVecs(mat,x,y);} 610 PETSC_EXTERN PetscErrorCode MatCreateRedundantMatrix(Mat,PetscInt,MPI_Comm,MatReuse,Mat*); 611 PETSC_EXTERN PetscErrorCode MatGetMultiProcBlock(Mat,MPI_Comm,MatReuse,Mat*); 612 PETSC_EXTERN PetscErrorCode MatFindZeroDiagonals(Mat,IS*); 613 PETSC_EXTERN PetscErrorCode MatFindOffBlockDiagonalEntries(Mat,IS*); 614 PETSC_EXTERN PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm,Mat,PetscInt,MatReuse,Mat*); 615 616 /*MC 617 MatSetValue - Set a single entry into a matrix. 618 619 Not collective 620 621 Synopsis: 622 #include <petscmat.h> 623 PetscErrorCode MatSetValue(Mat m,PetscInt row,PetscInt col,PetscScalar value,InsertMode mode) 624 625 Input Parameters: 626 + m - the matrix 627 . row - the row location of the entry 628 . col - the column location of the entry 629 . value - the value to insert 630 - mode - either INSERT_VALUES or ADD_VALUES 631 632 Notes: 633 For efficiency one should use MatSetValues() and set several or many 634 values simultaneously if possible. 635 636 Level: beginner 637 638 .seealso: MatSetValues(), MatSetValueLocal() 639 M*/ 640 PETSC_STATIC_INLINE PetscErrorCode MatSetValue(Mat v,PetscInt i,PetscInt j,PetscScalar va,InsertMode mode) {return MatSetValues(v,1,&i,1,&j,&va,mode);} 641 642 PETSC_STATIC_INLINE PetscErrorCode MatGetValue(Mat v,PetscInt i,PetscInt j,PetscScalar *va) {return MatGetValues(v,1,&i,1,&j,va);} 643 644 PETSC_STATIC_INLINE PetscErrorCode MatSetValueLocal(Mat v,PetscInt i,PetscInt j,PetscScalar va,InsertMode mode) {return MatSetValuesLocal(v,1,&i,1,&j,&va,mode);} 645 646 /*MC 647 MatPreallocateInitialize - Begins the block of code that will count the number of nonzeros per 648 row in a matrix providing the data that one can use to correctly preallocate the matrix. 649 650 Synopsis: 651 #include <petscmat.h> 652 PetscErrorCode MatPreallocateInitialize(MPI_Comm comm, PetscInt nrows, PetscInt ncols, PetscInt *dnz, PetscInt *onz) 653 654 Collective on MPI_Comm 655 656 Input Parameters: 657 + comm - the communicator that will share the eventually allocated matrix 658 . nrows - the number of LOCAL rows in the matrix 659 - ncols - the number of LOCAL columns in the matrix 660 661 Output Parameters: 662 + dnz - the array that will be passed to the matrix preallocation routines 663 - ozn - the other array passed to the matrix preallocation routines 664 665 Level: intermediate 666 667 Notes: 668 See Users-Manual: ch_performance for more details. 669 670 Do not malloc or free dnz and onz, that is handled internally by these routines 671 672 Use MatPreallocateInitializeSymmetric() for symmetric matrices (MPISBAIJ matrices) 673 674 This is a MACRO not a function because it has a leading { that is closed by PetscPreallocateFinalize(). 675 676 Concepts: preallocation^Matrix 677 678 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSetBlock(), MatPreallocateSetLocal(), 679 MatPreallocateInitializeSymmetric(), MatPreallocateSymmetricSetLocalBlock() 680 M*/ 681 #define MatPreallocateInitialize(comm,nrows,ncols,dnz,onz) 0; \ 682 { \ 683 PetscErrorCode _4_ierr; PetscInt __nrows = (nrows),__ctmp = (ncols),__rstart,__start,__end; \ 684 _4_ierr = PetscCalloc2((size_t)__nrows,&dnz,(size_t)__nrows,&onz);CHKERRQ(_4_ierr); \ 685 __start = 0; __end = __start; \ 686 _4_ierr = MPI_Scan(&__ctmp,&__end,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(_4_ierr); __start = __end - __ctmp;\ 687 _4_ierr = MPI_Scan(&__nrows,&__rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(_4_ierr); __rstart = __rstart - __nrows; 688 689 /*MC 690 MatPreallocateSetLocal - Indicates the locations (rows and columns) in the matrix where nonzeros will be 691 inserted using a local number of the rows and columns 692 693 Synopsis: 694 #include <petscmat.h> 695 PetscErrorCode MatPreallocateSetLocal(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 696 697 Not Collective 698 699 Input Parameters: 700 + map - the row mapping from local numbering to global numbering 701 . nrows - the number of rows indicated 702 . rows - the indices of the rows 703 . cmap - the column mapping from local to global numbering 704 . ncols - the number of columns in the matrix 705 . cols - the columns indicated 706 . dnz - the array that will be passed to the matrix preallocation routines 707 - ozn - the other array passed to the matrix preallocation routines 708 709 Level: intermediate 710 711 Notes: 712 See Users-Manual: ch_performance for more details. 713 714 Do not malloc or free dnz and onz, that is handled internally by these routines 715 716 Concepts: preallocation^Matrix 717 718 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSetBlock(), MatPreallocateInitialize(), 719 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocalBlock(), MatPreallocateSetLocalRemoveDups() 720 M*/ 721 #define MatPreallocateSetLocal(rmap,nrows,rows,cmap,ncols,cols,dnz,onz) 0; \ 722 {\ 723 PetscInt __l;\ 724 _4_ierr = ISLocalToGlobalMappingApply(rmap,nrows,rows,rows);CHKERRQ(_4_ierr);\ 725 _4_ierr = ISLocalToGlobalMappingApply(cmap,ncols,cols,cols);CHKERRQ(_4_ierr);\ 726 for (__l=0;__l<nrows;__l++) {\ 727 _4_ierr = MatPreallocateSet((rows)[__l],ncols,cols,dnz,onz);CHKERRQ(_4_ierr);\ 728 }\ 729 } 730 731 /*MC 732 MatPreallocateSetLocalRemoveDups - Indicates the locations (rows and columns) in the matrix where nonzeros will be 733 inserted using a local number of the rows and columns. This version removes any duplicate columns in cols 734 735 Synopsis: 736 #include <petscmat.h> 737 PetscErrorCode MatPreallocateSetLocalRemoveDups(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 738 739 Not Collective 740 741 Input Parameters: 742 + map - the row mapping from local numbering to global numbering 743 . nrows - the number of rows indicated 744 . rows - the indices of the rows (these values are mapped to the global values) 745 . cmap - the column mapping from local to global numbering 746 . ncols - the number of columns in the matrix (this value will be changed if duplicate columns are found) 747 . cols - the columns indicated (these values are mapped to the global values, they are then sorted and duplicates removed) 748 . dnz - the array that will be passed to the matrix preallocation routines 749 - ozn - the other array passed to the matrix preallocation routines 750 751 Level: intermediate 752 753 Notes: 754 See Users-Manual: ch_performance for more details. 755 756 Do not malloc or free dnz and onz, that is handled internally by these routines 757 758 Concepts: preallocation^Matrix 759 760 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSetBlock(), MatPreallocateInitialize(), 761 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocalBlock(), MatPreallocateSetLocal() 762 M*/ 763 #define MatPreallocateSetLocalRemoveDups(rmap,nrows,rows,cmap,ncols,cols,dnz,onz) 0; \ 764 {\ 765 PetscInt __l;\ 766 _4_ierr = ISLocalToGlobalMappingApply(rmap,nrows,rows,rows);CHKERRQ(_4_ierr);\ 767 _4_ierr = ISLocalToGlobalMappingApply(cmap,ncols,cols,cols);CHKERRQ(_4_ierr);\ 768 _4_ierr = PetscSortRemoveDupsInt(&ncols,cols);CHKERRQ(_4_ierr);\ 769 for (__l=0;__l<nrows;__l++) {\ 770 _4_ierr = MatPreallocateSet((rows)[__l],ncols,cols,dnz,onz);CHKERRQ(_4_ierr);\ 771 }\ 772 } 773 774 /*MC 775 MatPreallocateSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 776 inserted using a local number of the rows and columns 777 778 Synopsis: 779 #include <petscmat.h> 780 PetscErrorCode MatPreallocateSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 781 782 Not Collective 783 784 Input Parameters: 785 + map - the row mapping from local numbering to global numbering 786 . nrows - the number of rows indicated 787 . rows - the indices of the rows 788 . cmap - the column mapping from local to global numbering 789 . ncols - the number of columns in the matrix 790 . cols - the columns indicated 791 . dnz - the array that will be passed to the matrix preallocation routines 792 - ozn - the other array passed to the matrix preallocation routines 793 794 Level: intermediate 795 796 Notes: 797 See Users-Manual: ch_performance for more details. 798 799 Do not malloc or free dnz and onz, that is handled internally by these routines 800 801 Concepts: preallocation^Matrix 802 803 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSetBlock(), MatPreallocateInitialize(), 804 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocalBlock() 805 M*/ 806 #define MatPreallocateSetLocalBlock(rmap,nrows,rows,cmap,ncols,cols,dnz,onz) 0; \ 807 {\ 808 PetscInt __l;\ 809 _4_ierr = ISLocalToGlobalMappingApplyBlock(rmap,nrows,rows,rows);CHKERRQ(_4_ierr);\ 810 _4_ierr = ISLocalToGlobalMappingApplyBlock(cmap,ncols,cols,cols);CHKERRQ(_4_ierr);\ 811 for (__l=0;__l<nrows;__l++) {\ 812 _4_ierr = MatPreallocateSet((rows)[__l],ncols,cols,dnz,onz);CHKERRQ(_4_ierr);\ 813 }\ 814 } 815 816 /*MC 817 MatPreallocateSymmetricSetLocalBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 818 inserted using a local number of the rows and columns 819 820 Synopsis: 821 #include <petscmat.h> 822 PetscErrorCode MatPreallocateSymmetricSetLocalBlock(ISLocalToGlobalMappping map,PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 823 824 Not Collective 825 826 Input Parameters: 827 + map - the mapping between local numbering and global numbering 828 . nrows - the number of rows indicated 829 . rows - the indices of the rows 830 . ncols - the number of columns in the matrix 831 . cols - the columns indicated 832 . dnz - the array that will be passed to the matrix preallocation routines 833 - ozn - the other array passed to the matrix preallocation routines 834 835 Level: intermediate 836 837 Notes: 838 See Users-Manual: ch_performance for more details. 839 840 Do not malloc or free dnz and onz that is handled internally by these routines 841 842 Concepts: preallocation^Matrix 843 844 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateInitialize(), 845 MatPreallocateInitialize(), MatPreallocateSetLocal() 846 M*/ 847 #define MatPreallocateSymmetricSetLocalBlock(map,nrows,rows,ncols,cols,dnz,onz) 0;\ 848 {\ 849 PetscInt __l;\ 850 _4_ierr = ISLocalToGlobalMappingApplyBlock(map,nrows,rows,rows);CHKERRQ(_4_ierr);\ 851 _4_ierr = ISLocalToGlobalMappingApplyBlock(map,ncols,cols,cols);CHKERRQ(_4_ierr);\ 852 for (__l=0;__l<nrows;__l++) {\ 853 _4_ierr = MatPreallocateSymmetricSetBlock((rows)[__l],ncols,cols,dnz,onz);CHKERRQ(_4_ierr);\ 854 }\ 855 } 856 /*MC 857 MatPreallocateSet - Indicates the locations (rows and columns) in the matrix where nonzeros will be 858 inserted using a local number of the rows and columns 859 860 Synopsis: 861 #include <petscmat.h> 862 PetscErrorCode MatPreallocateSet(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 863 864 Not Collective 865 866 Input Parameters: 867 + row - the row 868 . ncols - the number of columns in the matrix 869 - cols - the columns indicated 870 871 Output Parameters: 872 + dnz - the array that will be passed to the matrix preallocation routines 873 - ozn - the other array passed to the matrix preallocation routines 874 875 Level: intermediate 876 877 Notes: 878 See Users-Manual: ch_performance for more details. 879 880 Do not malloc or free dnz and onz that is handled internally by these routines 881 882 This is a MACRO not a function because it uses variables declared in MatPreallocateInitialize(). 883 884 Concepts: preallocation^Matrix 885 886 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateSymmetricSetBlock(), MatPreallocateInitialize(), 887 MatPreallocateInitialize(), MatPreallocateSetLocal() 888 M*/ 889 #define MatPreallocateSet(row,nc,cols,dnz,onz) 0;\ 890 { PetscInt __i; \ 891 if (row < __rstart) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Trying to set preallocation for row %D less than first local row %D",row,__rstart);\ 892 if (row >= __rstart+__nrows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Trying to set preallocation for row %D greater than last local row %D",row,__rstart+__nrows-1);\ 893 for (__i=0; __i<nc; __i++) {\ 894 if ((cols)[__i] < __start || (cols)[__i] >= __end) onz[row - __rstart]++; \ 895 else dnz[row - __rstart]++;\ 896 }\ 897 } 898 899 /*MC 900 MatPreallocateSymmetricSetBlock - Indicates the locations (rows and columns) in the matrix where nonzeros will be 901 inserted using a local number of the rows and columns 902 903 Synopsis: 904 #include <petscmat.h> 905 PetscErrorCode MatPreallocateSymmetricSetBlock(PetscInt nrows, PetscInt *rows,PetscInt ncols, PetscInt *cols,PetscInt *dnz, PetscInt *onz) 906 907 Not Collective 908 909 Input Parameters: 910 + nrows - the number of rows indicated 911 . rows - the indices of the rows 912 . ncols - the number of columns in the matrix 913 . cols - the columns indicated 914 . dnz - the array that will be passed to the matrix preallocation routines 915 - ozn - the other array passed to the matrix preallocation routines 916 917 Level: intermediate 918 919 Notes: 920 See Users-Manual: ch_performance for more details. 921 922 Do not malloc or free dnz and onz that is handled internally by these routines 923 924 This is a MACRO not a function because it uses variables declared in MatPreallocateInitialize(). 925 926 Concepts: preallocation^Matrix 927 928 .seealso: MatPreallocateFinalize(), MatPreallocateSet(), MatPreallocateInitialize(), 929 MatPreallocateInitialize(), MatPreallocateSymmetricSetLocalBlock(), MatPreallocateSetLocal() 930 M*/ 931 #define MatPreallocateSymmetricSetBlock(row,nc,cols,dnz,onz) 0;\ 932 { PetscInt __i; \ 933 for (__i=0; __i<nc; __i++) {\ 934 if (cols[__i] >= __end) onz[row - __rstart]++; \ 935 else if (cols[__i] >= row) dnz[row - __rstart]++;\ 936 }\ 937 } 938 939 /*MC 940 MatPreallocateLocation - An alternative to MatPreallocationSet() that puts the nonzero locations into the matrix if it exists 941 942 Synopsis: 943 #include <petscmat.h> 944 PetscErrorCode MatPreallocateLocations(Mat A,PetscInt row,PetscInt ncols,PetscInt *cols,PetscInt *dnz,PetscInt *onz) 945 946 Not Collective 947 948 Input Parameters: 949 . A - matrix 950 . row - row where values exist (must be local to this process) 951 . ncols - number of columns 952 . cols - columns with nonzeros 953 . dnz - the array that will be passed to the matrix preallocation routines 954 - ozn - the other array passed to the matrix preallocation routines 955 956 Level: intermediate 957 958 Notes: 959 See Users-Manual: ch_performance for more details. 960 961 Do not malloc or free dnz and onz that is handled internally by these routines 962 963 This is a MACRO not a function because it uses a bunch of variables private to the MatPreallocation.... routines. 964 965 Concepts: preallocation^Matrix 966 967 .seealso: MatPreallocateInitialize(), MatPreallocateSet(), MatPreallocateSymmetricSetBlock(), MatPreallocateSetLocal(), 968 MatPreallocateSymmetricSetLocalBlock() 969 M*/ 970 #define MatPreallocateLocation(A,row,ncols,cols,dnz,onz) 0;if (A) {ierr = MatSetValues(A,1,&row,ncols,cols,NULL,INSERT_VALUES);CHKERRQ(ierr);} else {ierr = MatPreallocateSet(row,ncols,cols,dnz,onz);CHKERRQ(ierr);} 971 972 973 /*MC 974 MatPreallocateFinalize - Ends the block of code that will count the number of nonzeros per 975 row in a matrix providing the data that one can use to correctly preallocate the matrix. 976 977 Synopsis: 978 #include <petscmat.h> 979 PetscErrorCode MatPreallocateFinalize(PetscInt *dnz, PetscInt *onz) 980 981 Collective on MPI_Comm 982 983 Input Parameters: 984 + dnz - the array that was be passed to the matrix preallocation routines 985 - ozn - the other array passed to the matrix preallocation routines 986 987 Level: intermediate 988 989 Notes: 990 See Users-Manual: ch_performance for more details. 991 992 Do not malloc or free dnz and onz that is handled internally by these routines 993 994 This is a MACRO not a function because it closes the { started in MatPreallocateInitialize(). 995 996 Concepts: preallocation^Matrix 997 998 .seealso: MatPreallocateInitialize(), MatPreallocateSet(), MatPreallocateSymmetricSetBlock(), MatPreallocateSetLocal(), 999 MatPreallocateSymmetricSetLocalBlock() 1000 M*/ 1001 #define MatPreallocateFinalize(dnz,onz) 0;_4_ierr = PetscFree2(dnz,onz);CHKERRQ(_4_ierr);} 1002 1003 /* Routines unique to particular data structures */ 1004 PETSC_EXTERN PetscErrorCode MatShellGetContext(Mat,void *); 1005 1006 PETSC_EXTERN PetscErrorCode MatInodeAdjustForInodes(Mat,IS*,IS*); 1007 PETSC_EXTERN PetscErrorCode MatInodeGetInodeSizes(Mat,PetscInt *,PetscInt *[],PetscInt *); 1008 1009 PETSC_EXTERN PetscErrorCode MatSeqAIJSetColumnIndices(Mat,PetscInt[]); 1010 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetColumnIndices(Mat,PetscInt[]); 1011 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*); 1012 PETSC_EXTERN PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*); 1013 PETSC_EXTERN PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*); 1014 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJFromTriple(MPI_Comm,PetscInt,PetscInt,PetscInt[],PetscInt[],PetscScalar[],Mat*,PetscInt,PetscBool); 1015 1016 #define MAT_SKIP_ALLOCATION -4 1017 1018 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[]); 1019 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[]); 1020 PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation(Mat,PetscInt,const PetscInt[]); 1021 1022 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1023 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetPreallocation(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1024 PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocation(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1025 PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocationCSR(Mat,const PetscInt [],const PetscInt [],const PetscScalar []); 1026 PETSC_EXTERN PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 1027 PETSC_EXTERN PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat,const PetscInt[],const PetscInt[],const PetscScalar[]); 1028 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 1029 PETSC_EXTERN PetscErrorCode MatMPIAdjSetPreallocation(Mat,PetscInt[],PetscInt[],PetscInt[]); 1030 PETSC_EXTERN PetscErrorCode MatMPIAdjToSeq(Mat,Mat*); 1031 PETSC_EXTERN PetscErrorCode MatMPIDenseSetPreallocation(Mat,PetscScalar[]); 1032 PETSC_EXTERN PetscErrorCode MatSeqDenseSetPreallocation(Mat,PetscScalar[]); 1033 PETSC_EXTERN PetscErrorCode MatMPIAIJGetSeqAIJ(Mat,Mat*,Mat*,const PetscInt*[]); 1034 PETSC_EXTERN PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat,Mat*,Mat*,const PetscInt*[]); 1035 PETSC_EXTERN PetscErrorCode MatMPIAdjCreateNonemptySubcommMat(Mat,Mat*); 1036 1037 PETSC_EXTERN PetscErrorCode MatISSetPreallocation(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 1038 PETSC_EXTERN PetscErrorCode MatISSetUpSF(Mat); 1039 PETSC_EXTERN PetscErrorCode MatSeqDenseSetLDA(Mat,PetscInt); 1040 PETSC_EXTERN PetscErrorCode MatDenseGetLocalMatrix(Mat,Mat*); 1041 1042 PETSC_EXTERN PetscErrorCode MatStoreValues(Mat); 1043 PETSC_EXTERN PetscErrorCode MatRetrieveValues(Mat); 1044 1045 PETSC_EXTERN PetscErrorCode MatDAADSetCtx(Mat,void*); 1046 1047 PETSC_EXTERN PetscErrorCode MatFindNonzeroRows(Mat,IS*); 1048 PETSC_EXTERN PetscErrorCode MatFindZeroRows(Mat,IS*); 1049 /* 1050 These routines are not usually accessed directly, rather solving is 1051 done through the KSP and PC interfaces. 1052 */ 1053 1054 /*J 1055 MatOrderingType - String with the name of a PETSc matrix ordering 1056 1057 Level: beginner 1058 1059 .seealso: MatGetOrdering() 1060 J*/ 1061 typedef const char* MatOrderingType; 1062 #define MATORDERINGNATURAL "natural" 1063 #define MATORDERINGND "nd" 1064 #define MATORDERING1WD "1wd" 1065 #define MATORDERINGRCM "rcm" 1066 #define MATORDERINGQMD "qmd" 1067 #define MATORDERINGROWLENGTH "rowlength" 1068 #define MATORDERINGWBM "wbm" 1069 #define MATORDERINGSPECTRAL "spectral" 1070 #define MATORDERINGAMD "amd" /* only works if UMFPACK is installed with PETSc */ 1071 1072 PETSC_EXTERN PetscErrorCode MatGetOrdering(Mat,MatOrderingType,IS*,IS*); 1073 PETSC_EXTERN PetscErrorCode MatGetOrderingList(PetscFunctionList*); 1074 PETSC_EXTERN PetscErrorCode MatOrderingRegister(const char[],PetscErrorCode(*)(Mat,MatOrderingType,IS*,IS*)); 1075 PETSC_EXTERN PetscFunctionList MatOrderingList; 1076 1077 PETSC_EXTERN PetscErrorCode MatReorderForNonzeroDiagonal(Mat,PetscReal,IS,IS); 1078 PETSC_EXTERN PetscErrorCode MatCreateLaplacian(Mat,PetscReal,PetscBool,Mat*); 1079 1080 /*S 1081 MatFactorShiftType - Numeric Shift. 1082 1083 Level: beginner 1084 1085 S*/ 1086 typedef enum {MAT_SHIFT_NONE,MAT_SHIFT_NONZERO,MAT_SHIFT_POSITIVE_DEFINITE,MAT_SHIFT_INBLOCKS} MatFactorShiftType; 1087 PETSC_EXTERN const char *const MatFactorShiftTypes[]; 1088 PETSC_EXTERN const char *const MatFactorShiftTypesDetail[]; 1089 1090 /*S 1091 MatFactorError - indicates what type of error in matrix factor 1092 1093 Level: beginner 1094 1095 Developer Notes: Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 1096 1097 .seealso: MatGetFactor() 1098 S*/ 1099 typedef enum {MAT_FACTOR_NOERROR,MAT_FACTOR_STRUCT_ZEROPIVOT,MAT_FACTOR_NUMERIC_ZEROPIVOT,MAT_FACTOR_OUTMEMORY,MAT_FACTOR_OTHER} MatFactorError; 1100 1101 PETSC_EXTERN PetscErrorCode MatFactorGetError(Mat,MatFactorError*); 1102 PETSC_EXTERN PetscErrorCode MatFactorClearError(Mat); 1103 PETSC_EXTERN PetscErrorCode MatFactorGetErrorZeroPivot(Mat,PetscReal*,PetscInt*); 1104 1105 /*S 1106 MatFactorInfo - Data passed into the matrix factorization routines, and information about the resulting factorization 1107 1108 In Fortran these are simply double precision arrays of size MAT_FACTORINFO_SIZE, that is use 1109 $ MatFactorInfo info(MAT_FACTORINFO_SIZE) 1110 1111 Notes: These are not usually directly used by users, instead use PC type of LU, ILU, CHOLESKY or ICC. 1112 1113 You can use MatFactorInfoInitialize() to set default values. 1114 1115 Level: developer 1116 1117 .seealso: MatLUFactorSymbolic(), MatILUFactorSymbolic(), MatCholeskyFactorSymbolic(), MatICCFactorSymbolic(), MatICCFactor(), 1118 MatFactorInfoInitialize() 1119 1120 S*/ 1121 typedef struct { 1122 PetscReal diagonal_fill; /* force diagonal to fill in if initially not filled */ 1123 PetscReal usedt; 1124 PetscReal dt; /* drop tolerance */ 1125 PetscReal dtcol; /* tolerance for pivoting */ 1126 PetscReal dtcount; /* maximum nonzeros to be allowed per row */ 1127 PetscReal fill; /* expected fill, nonzeros in factored matrix/nonzeros in original matrix */ 1128 PetscReal levels; /* ICC/ILU(levels) */ 1129 PetscReal pivotinblocks; /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 1130 factorization may be faster if do not pivot */ 1131 PetscReal zeropivot; /* pivot is called zero if less than this */ 1132 PetscReal shifttype; /* type of shift added to matrix factor to prevent zero pivots */ 1133 PetscReal shiftamount; /* how large the shift is */ 1134 } MatFactorInfo; 1135 1136 PETSC_EXTERN PetscErrorCode MatFactorInfoInitialize(MatFactorInfo*); 1137 PETSC_EXTERN PetscErrorCode MatCholeskyFactor(Mat,IS,const MatFactorInfo*); 1138 PETSC_EXTERN PetscErrorCode MatCholeskyFactorSymbolic(Mat,Mat,IS,const MatFactorInfo*); 1139 PETSC_EXTERN PetscErrorCode MatCholeskyFactorNumeric(Mat,Mat,const MatFactorInfo*); 1140 PETSC_EXTERN PetscErrorCode MatLUFactor(Mat,IS,IS,const MatFactorInfo*); 1141 PETSC_EXTERN PetscErrorCode MatILUFactor(Mat,IS,IS,const MatFactorInfo*); 1142 PETSC_EXTERN PetscErrorCode MatLUFactorSymbolic(Mat,Mat,IS,IS,const MatFactorInfo*); 1143 PETSC_EXTERN PetscErrorCode MatILUFactorSymbolic(Mat,Mat,IS,IS,const MatFactorInfo*); 1144 PETSC_EXTERN PetscErrorCode MatICCFactorSymbolic(Mat,Mat,IS,const MatFactorInfo*); 1145 PETSC_EXTERN PetscErrorCode MatICCFactor(Mat,IS,const MatFactorInfo*); 1146 PETSC_EXTERN PetscErrorCode MatLUFactorNumeric(Mat,Mat,const MatFactorInfo*); 1147 PETSC_EXTERN PetscErrorCode MatGetInertia(Mat,PetscInt*,PetscInt*,PetscInt*); 1148 PETSC_EXTERN PetscErrorCode MatSolve(Mat,Vec,Vec); 1149 PETSC_EXTERN PetscErrorCode MatForwardSolve(Mat,Vec,Vec); 1150 PETSC_EXTERN PetscErrorCode MatBackwardSolve(Mat,Vec,Vec); 1151 PETSC_EXTERN PetscErrorCode MatSolveAdd(Mat,Vec,Vec,Vec); 1152 PETSC_EXTERN PetscErrorCode MatSolveTranspose(Mat,Vec,Vec); 1153 PETSC_EXTERN PetscErrorCode MatSolveTransposeAdd(Mat,Vec,Vec,Vec); 1154 PETSC_EXTERN PetscErrorCode MatSolves(Mat,Vecs,Vecs); 1155 PETSC_EXTERN PetscErrorCode MatSetUnfactored(Mat); 1156 1157 typedef enum {MAT_FACTOR_SCHUR_UNFACTORED, MAT_FACTOR_SCHUR_FACTORED, MAT_FACTOR_SCHUR_INVERTED} MatFactorSchurStatus; 1158 PETSC_EXTERN PetscErrorCode MatFactorSetSchurIS(Mat,IS); 1159 PETSC_EXTERN PetscErrorCode MatFactorGetSchurComplement(Mat,Mat*,MatFactorSchurStatus*); 1160 PETSC_EXTERN PetscErrorCode MatFactorRestoreSchurComplement(Mat,Mat*,MatFactorSchurStatus); 1161 PETSC_EXTERN PetscErrorCode MatFactorInvertSchurComplement(Mat); 1162 PETSC_EXTERN PetscErrorCode MatFactorCreateSchurComplement(Mat,Mat*,MatFactorSchurStatus*); 1163 PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplement(Mat,Vec,Vec); 1164 PETSC_EXTERN PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat,Vec,Vec); 1165 PETSC_EXTERN PetscErrorCode MatFactorFactorizeSchurComplement(Mat); 1166 1167 /*E 1168 MatSORType - What type of (S)SOR to perform 1169 1170 Level: beginner 1171 1172 May be bitwise ORd together 1173 1174 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 1175 1176 MatSORType may be bitwise ORd together, so do not change the numbers 1177 1178 .seealso: MatSOR() 1179 E*/ 1180 typedef enum {SOR_FORWARD_SWEEP=1,SOR_BACKWARD_SWEEP=2,SOR_SYMMETRIC_SWEEP=3, 1181 SOR_LOCAL_FORWARD_SWEEP=4,SOR_LOCAL_BACKWARD_SWEEP=8, 1182 SOR_LOCAL_SYMMETRIC_SWEEP=12,SOR_ZERO_INITIAL_GUESS=16, 1183 SOR_EISENSTAT=32,SOR_APPLY_UPPER=64,SOR_APPLY_LOWER=128} MatSORType; 1184 PETSC_EXTERN PetscErrorCode MatSOR(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 1185 1186 /* 1187 These routines are for efficiently computing Jacobians via finite differences. 1188 */ 1189 1190 /*S 1191 MatColoring - Object for managing the coloring of matrices. 1192 1193 Level: beginner 1194 1195 Concepts: matrix, coloring 1196 1197 .seealso: MatFDColoringCreate() ISColoring MatFDColoring 1198 S*/ 1199 typedef struct _p_MatColoring* MatColoring; 1200 /*J 1201 MatColoringType - String with the name of a PETSc matrix coloring 1202 1203 Level: beginner 1204 1205 .seealso: MatColoringSetType(), MatColoring 1206 J*/ 1207 1208 typedef const char* MatColoringType; 1209 #define MATCOLORINGJP "jp" 1210 #define MATCOLORINGPOWER "power" 1211 #define MATCOLORINGNATURAL "natural" 1212 #define MATCOLORINGSL "sl" 1213 #define MATCOLORINGLF "lf" 1214 #define MATCOLORINGID "id" 1215 #define MATCOLORINGGREEDY "greedy" 1216 1217 /*E 1218 MatColoringWeightType - Type of weight scheme 1219 1220 Not Collective 1221 1222 + MAT_COLORING_RANDOM - Random weights 1223 . MAT_COLORING_LEXICAL - Lexical weighting based upon global numbering. 1224 - MAT_COLORING_LF - Last-first weighting. 1225 1226 Level: intermediate 1227 1228 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 1229 E*/ 1230 typedef enum {MAT_COLORING_WEIGHT_RANDOM,MAT_COLORING_WEIGHT_LEXICAL,MAT_COLORING_WEIGHT_LF,MAT_COLORING_WEIGHT_SL} MatColoringWeightType; 1231 1232 PETSC_EXTERN PetscErrorCode MatColoringCreate(Mat,MatColoring*); 1233 PETSC_EXTERN PetscErrorCode MatColoringGetDegrees(Mat,PetscInt,PetscInt*); 1234 PETSC_EXTERN PetscErrorCode MatColoringDestroy(MatColoring*); 1235 PETSC_EXTERN PetscErrorCode MatColoringView(MatColoring,PetscViewer); 1236 PETSC_EXTERN PetscErrorCode MatColoringSetType(MatColoring,MatColoringType); 1237 PETSC_EXTERN PetscErrorCode MatColoringSetFromOptions(MatColoring); 1238 PETSC_EXTERN PetscErrorCode MatColoringSetDistance(MatColoring,PetscInt); 1239 PETSC_EXTERN PetscErrorCode MatColoringGetDistance(MatColoring,PetscInt*); 1240 PETSC_EXTERN PetscErrorCode MatColoringSetMaxColors(MatColoring,PetscInt); 1241 PETSC_EXTERN PetscErrorCode MatColoringGetMaxColors(MatColoring,PetscInt*); 1242 PETSC_EXTERN PetscErrorCode MatColoringApply(MatColoring,ISColoring*); 1243 PETSC_EXTERN PetscErrorCode MatColoringRegister(const char[],PetscErrorCode(*)(MatColoring)); 1244 PETSC_EXTERN PetscErrorCode MatColoringPatch(Mat,PetscInt,PetscInt,ISColoringValue[],ISColoring*); 1245 PETSC_EXTERN PetscErrorCode MatColoringSetWeightType(MatColoring,MatColoringWeightType); 1246 PETSC_EXTERN PetscErrorCode MatColoringSetWeights(MatColoring,PetscReal*,PetscInt*); 1247 PETSC_EXTERN PetscErrorCode MatColoringCreateWeights(MatColoring,PetscReal **,PetscInt **lperm); 1248 PETSC_EXTERN PetscErrorCode MatColoringTest(MatColoring,ISColoring); 1249 PETSC_EXTERN PetscErrorCode MatISColoringTest(Mat,ISColoring); 1250 1251 /*S 1252 MatFDColoring - Object for computing a sparse Jacobian via finite differences 1253 and coloring 1254 1255 Level: beginner 1256 1257 Concepts: coloring, sparse Jacobian, finite differences 1258 1259 .seealso: MatFDColoringCreate() 1260 S*/ 1261 typedef struct _p_MatFDColoring* MatFDColoring; 1262 1263 PETSC_EXTERN PetscErrorCode MatFDColoringCreate(Mat,ISColoring,MatFDColoring *); 1264 PETSC_EXTERN PetscErrorCode MatFDColoringDestroy(MatFDColoring*); 1265 PETSC_EXTERN PetscErrorCode MatFDColoringView(MatFDColoring,PetscViewer); 1266 PETSC_EXTERN PetscErrorCode MatFDColoringSetFunction(MatFDColoring,PetscErrorCode (*)(void),void*); 1267 PETSC_EXTERN PetscErrorCode MatFDColoringGetFunction(MatFDColoring,PetscErrorCode (**)(void),void**); 1268 PETSC_EXTERN PetscErrorCode MatFDColoringSetParameters(MatFDColoring,PetscReal,PetscReal); 1269 PETSC_EXTERN PetscErrorCode MatFDColoringSetFromOptions(MatFDColoring); 1270 PETSC_EXTERN PetscErrorCode MatFDColoringApply(Mat,MatFDColoring,Vec,void *); 1271 PETSC_EXTERN PetscErrorCode MatFDColoringSetF(MatFDColoring,Vec); 1272 PETSC_EXTERN PetscErrorCode MatFDColoringGetPerturbedColumns(MatFDColoring,PetscInt*,const PetscInt*[]); 1273 PETSC_EXTERN PetscErrorCode MatFDColoringSetUp(Mat,ISColoring,MatFDColoring); 1274 PETSC_EXTERN PetscErrorCode MatFDColoringSetBlockSize(MatFDColoring,PetscInt,PetscInt); 1275 1276 1277 /*S 1278 MatTransposeColoring - Object for computing a sparse matrix product C=A*B^T via coloring 1279 1280 Level: beginner 1281 1282 Concepts: coloring, sparse matrix product 1283 1284 .seealso: MatTransposeColoringCreate() 1285 S*/ 1286 typedef struct _p_MatTransposeColoring* MatTransposeColoring; 1287 1288 PETSC_EXTERN PetscErrorCode MatTransposeColoringCreate(Mat,ISColoring,MatTransposeColoring *); 1289 PETSC_EXTERN PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring,Mat,Mat); 1290 PETSC_EXTERN PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring,Mat,Mat); 1291 PETSC_EXTERN PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring*); 1292 1293 /* 1294 These routines are for partitioning matrices: currently used only 1295 for adjacency matrix, MatCreateMPIAdj(). 1296 */ 1297 1298 /*S 1299 MatPartitioning - Object for managing the partitioning of a matrix or graph 1300 1301 Level: beginner 1302 1303 Concepts: partitioning 1304 1305 .seealso: MatPartitioningCreate(), MatPartitioningType 1306 S*/ 1307 typedef struct _p_MatPartitioning* MatPartitioning; 1308 1309 /*J 1310 MatPartitioningType - String with the name of a PETSc matrix partitioning 1311 1312 Level: beginner 1313 dm 1314 .seealso: MatPartitioningCreate(), MatPartitioning 1315 J*/ 1316 typedef const char* MatPartitioningType; 1317 #define MATPARTITIONINGCURRENT "current" 1318 #define MATPARTITIONINGAVERAGE "average" 1319 #define MATPARTITIONINGSQUARE "square" 1320 #define MATPARTITIONINGPARMETIS "parmetis" 1321 #define MATPARTITIONINGCHACO "chaco" 1322 #define MATPARTITIONINGPARTY "party" 1323 #define MATPARTITIONINGPTSCOTCH "ptscotch" 1324 #define MATPARTITIONINGHIERARCH "hierarch" 1325 1326 1327 PETSC_EXTERN PetscErrorCode MatPartitioningCreate(MPI_Comm,MatPartitioning*); 1328 PETSC_EXTERN PetscErrorCode MatPartitioningSetType(MatPartitioning,MatPartitioningType); 1329 PETSC_EXTERN PetscErrorCode MatPartitioningSetNParts(MatPartitioning,PetscInt); 1330 PETSC_EXTERN PetscErrorCode MatPartitioningSetAdjacency(MatPartitioning,Mat); 1331 PETSC_EXTERN PetscErrorCode MatPartitioningSetVertexWeights(MatPartitioning,const PetscInt[]); 1332 PETSC_EXTERN PetscErrorCode MatPartitioningSetPartitionWeights(MatPartitioning,const PetscReal []); 1333 PETSC_EXTERN PetscErrorCode MatPartitioningApply(MatPartitioning,IS*); 1334 PETSC_EXTERN PetscErrorCode MatPartitioningDestroy(MatPartitioning*); 1335 1336 PETSC_EXTERN PetscErrorCode MatPartitioningRegister(const char[],PetscErrorCode (*)(MatPartitioning)); 1337 1338 1339 1340 PETSC_EXTERN PetscErrorCode MatPartitioningView(MatPartitioning,PetscViewer); 1341 PETSC_EXTERN PetscErrorCode MatPartitioningSetFromOptions(MatPartitioning); 1342 PETSC_EXTERN PetscErrorCode MatPartitioningGetType(MatPartitioning,MatPartitioningType*); 1343 1344 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetRepartition(MatPartitioning part); 1345 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisSetCoarseSequential(MatPartitioning); 1346 PETSC_EXTERN PetscErrorCode MatPartitioningParmetisGetEdgeCut(MatPartitioning, PetscInt *); 1347 1348 typedef enum { MP_CHACO_MULTILEVEL=1,MP_CHACO_SPECTRAL=2,MP_CHACO_LINEAR=4,MP_CHACO_RANDOM=5,MP_CHACO_SCATTERED=6 } MPChacoGlobalType; 1349 PETSC_EXTERN const char *const MPChacoGlobalTypes[]; 1350 typedef enum { MP_CHACO_KERNIGHAN=1,MP_CHACO_NONE=2 } MPChacoLocalType; 1351 PETSC_EXTERN const char *const MPChacoLocalTypes[]; 1352 typedef enum { MP_CHACO_LANCZOS=0,MP_CHACO_RQI=1 } MPChacoEigenType; 1353 PETSC_EXTERN const char *const MPChacoEigenTypes[]; 1354 1355 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetGlobal(MatPartitioning,MPChacoGlobalType); 1356 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetGlobal(MatPartitioning,MPChacoGlobalType*); 1357 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetLocal(MatPartitioning,MPChacoLocalType); 1358 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetLocal(MatPartitioning,MPChacoLocalType*); 1359 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetCoarseLevel(MatPartitioning,PetscReal); 1360 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenSolver(MatPartitioning,MPChacoEigenType); 1361 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenSolver(MatPartitioning,MPChacoEigenType*); 1362 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenTol(MatPartitioning,PetscReal); 1363 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenTol(MatPartitioning,PetscReal*); 1364 PETSC_EXTERN PetscErrorCode MatPartitioningChacoSetEigenNumber(MatPartitioning,PetscInt); 1365 PETSC_EXTERN PetscErrorCode MatPartitioningChacoGetEigenNumber(MatPartitioning,PetscInt*); 1366 1367 #define MP_PARTY_OPT "opt" 1368 #define MP_PARTY_LIN "lin" 1369 #define MP_PARTY_SCA "sca" 1370 #define MP_PARTY_RAN "ran" 1371 #define MP_PARTY_GBF "gbf" 1372 #define MP_PARTY_GCF "gcf" 1373 #define MP_PARTY_BUB "bub" 1374 #define MP_PARTY_DEF "def" 1375 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetGlobal(MatPartitioning,const char*); 1376 #define MP_PARTY_HELPFUL_SETS "hs" 1377 #define MP_PARTY_KERNIGHAN_LIN "kl" 1378 #define MP_PARTY_NONE "no" 1379 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetLocal(MatPartitioning,const char*); 1380 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetCoarseLevel(MatPartitioning,PetscReal); 1381 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetBipart(MatPartitioning,PetscBool); 1382 PETSC_EXTERN PetscErrorCode MatPartitioningPartySetMatchOptimization(MatPartitioning,PetscBool); 1383 1384 typedef enum { MP_PTSCOTCH_DEFAULT,MP_PTSCOTCH_QUALITY,MP_PTSCOTCH_SPEED,MP_PTSCOTCH_BALANCE,MP_PTSCOTCH_SAFETY,MP_PTSCOTCH_SCALABILITY } MPPTScotchStrategyType; 1385 PETSC_EXTERN const char *const MPPTScotchStrategyTypes[]; 1386 1387 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetImbalance(MatPartitioning,PetscReal); 1388 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetImbalance(MatPartitioning,PetscReal*); 1389 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchSetStrategy(MatPartitioning,MPPTScotchStrategyType); 1390 PETSC_EXTERN PetscErrorCode MatPartitioningPTScotchGetStrategy(MatPartitioning,MPPTScotchStrategyType*); 1391 1392 /* 1393 * hierarchical partitioning 1394 */ 1395 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetFineparts(MatPartitioning,IS*); 1396 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalGetCoarseparts(MatPartitioning,IS*); 1397 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNcoarseparts(MatPartitioning,PetscInt); 1398 PETSC_EXTERN PetscErrorCode MatPartitioningHierarchicalSetNfineparts(MatPartitioning, PetscInt); 1399 1400 PETSC_EXTERN PetscErrorCode MatMeshToVertexGraph(Mat,PetscInt,Mat*); 1401 PETSC_EXTERN PetscErrorCode MatMeshToCellGraph(Mat,PetscInt,Mat*); 1402 1403 /* 1404 If you add entries here you must also add them to petsc/finclude/petscmat.h 1405 */ 1406 typedef enum { MATOP_SET_VALUES=0, 1407 MATOP_GET_ROW=1, 1408 MATOP_RESTORE_ROW=2, 1409 MATOP_MULT=3, 1410 MATOP_MULT_ADD=4, 1411 MATOP_MULT_TRANSPOSE=5, 1412 MATOP_MULT_TRANSPOSE_ADD=6, 1413 MATOP_SOLVE=7, 1414 MATOP_SOLVE_ADD=8, 1415 MATOP_SOLVE_TRANSPOSE=9, 1416 MATOP_SOLVE_TRANSPOSE_ADD=10, 1417 MATOP_LUFACTOR=11, 1418 MATOP_CHOLESKYFACTOR=12, 1419 MATOP_SOR=13, 1420 MATOP_TRANSPOSE=14, 1421 MATOP_GETINFO=15, 1422 MATOP_EQUAL=16, 1423 MATOP_GET_DIAGONAL=17, 1424 MATOP_DIAGONAL_SCALE=18, 1425 MATOP_NORM=19, 1426 MATOP_ASSEMBLY_BEGIN=20, 1427 MATOP_ASSEMBLY_END=21, 1428 MATOP_SET_OPTION=22, 1429 MATOP_ZERO_ENTRIES=23, 1430 MATOP_ZERO_ROWS=24, 1431 MATOP_LUFACTOR_SYMBOLIC=25, 1432 MATOP_LUFACTOR_NUMERIC=26, 1433 MATOP_CHOLESKY_FACTOR_SYMBOLIC=27, 1434 MATOP_CHOLESKY_FACTOR_NUMERIC=28, 1435 MATOP_SETUP_PREALLOCATION=29, 1436 MATOP_ILUFACTOR_SYMBOLIC=30, 1437 MATOP_ICCFACTOR_SYMBOLIC=31, 1438 MATOP_GET_DIAGONAL_BLOCK=32, 1439 /* MATOP_PLACEHOLDER_33=33, */ 1440 MATOP_DUPLICATE=34, 1441 MATOP_FORWARD_SOLVE=35, 1442 MATOP_BACKWARD_SOLVE=36, 1443 MATOP_ILUFACTOR=37, 1444 MATOP_ICCFACTOR=38, 1445 MATOP_AXPY=39, 1446 MATOP_CREATE_SUBMATRICES=40, 1447 MATOP_INCREASE_OVERLAP=41, 1448 MATOP_GET_VALUES=42, 1449 MATOP_COPY=43, 1450 MATOP_GET_ROW_MAX=44, 1451 MATOP_SCALE=45, 1452 MATOP_SHIFT=46, 1453 MATOP_DIAGONAL_SET=47, 1454 MATOP_ZERO_ROWS_COLUMNS=48, 1455 MATOP_SET_RANDOM=49, 1456 MATOP_GET_ROW_IJ=50, 1457 MATOP_RESTORE_ROW_IJ=51, 1458 MATOP_GET_COLUMN_IJ=52, 1459 MATOP_RESTORE_COLUMN_IJ=53, 1460 MATOP_FDCOLORING_CREATE=54, 1461 MATOP_COLORING_PATCH=55, 1462 MATOP_SET_UNFACTORED=56, 1463 MATOP_PERMUTE=57, 1464 MATOP_SET_VALUES_BLOCKED=58, 1465 MATOP_CREATE_SUBMATRIX=59, 1466 MATOP_DESTROY=60, 1467 MATOP_VIEW=61, 1468 MATOP_CONVERT_FROM=62, 1469 MATOP_MATMAT_MULT=63, 1470 MATOP_MATMAT_MULT_SYMBOLIC=64, 1471 MATOP_MATMAT_MULT_NUMERIC=65, 1472 MATOP_SET_LOCAL_TO_GLOBAL_MAP=66, 1473 MATOP_SET_VALUES_LOCAL=67, 1474 MATOP_ZERO_ROWS_LOCAL=68, 1475 MATOP_GET_ROW_MAX_ABS=69, 1476 MATOP_GET_ROW_MIN_ABS=70, 1477 MATOP_CONVERT=71, 1478 MATOP_SET_COLORING=72, 1479 /* MATOP_PLACEHOLDER_73=73, */ 1480 MATOP_SET_VALUES_ADIFOR=74, 1481 MATOP_FD_COLORING_APPLY=75, 1482 MATOP_SET_FROM_OPTIONS=76, 1483 MATOP_MULT_CONSTRAINED=77, 1484 MATOP_MULT_TRANSPOSE_CONSTRAIN=78, 1485 MATOP_FIND_ZERO_DIAGONALS=79, 1486 MATOP_MULT_MULTIPLE=80, 1487 MATOP_SOLVE_MULTIPLE=81, 1488 MATOP_GET_INERTIA=82, 1489 MATOP_LOAD=83, 1490 MATOP_IS_SYMMETRIC=84, 1491 MATOP_IS_HERMITIAN=85, 1492 MATOP_IS_STRUCTURALLY_SYMMETRIC=86, 1493 MATOP_SET_VALUES_BLOCKEDLOCAL=87, 1494 MATOP_CREATE_VECS=88, 1495 MATOP_MAT_MULT=89, 1496 MATOP_MAT_MULT_SYMBOLIC=90, 1497 MATOP_MAT_MULT_NUMERIC=91, 1498 MATOP_PTAP=92, 1499 MATOP_PTAP_SYMBOLIC=93, 1500 MATOP_PTAP_NUMERIC=94, 1501 MATOP_MAT_TRANSPOSE_MULT=95, 1502 MATOP_MAT_TRANSPOSE_MULT_SYMBO=96, 1503 MATOP_MAT_TRANSPOSE_MULT_NUMER=97, 1504 /* MATOP_PLACEHOLDER_98=98, */ 1505 /* MATOP_PLACEHOLDER_99=99, */ 1506 /* MATOP_PLACEHOLDER_100=100, */ 1507 /* MATOP_PLACEHOLDER_101=101, */ 1508 MATOP_CONJUGATE=102, 1509 /* MATOP_PLACEHOLDER_103=103, */ 1510 MATOP_SET_VALUES_ROW=104, 1511 MATOP_REAL_PART=105, 1512 MATOP_IMAGINARY_PART=106, 1513 MATOP_GET_ROW_UPPER_TRIANGULAR=107, 1514 MATOP_RESTORE_ROW_UPPER_TRIANG=108, 1515 MATOP_MAT_SOLVE=109, 1516 MATOP_MAT_SOLVE_TRANSPOSE=110, 1517 MATOP_GET_ROW_MIN=111, 1518 MATOP_GET_COLUMN_VECTOR=112, 1519 MATOP_MISSING_DIAGONAL=113, 1520 MATOP_GET_SEQ_NONZERO_STRUCTUR=114, 1521 MATOP_CREATE=115, 1522 MATOP_GET_GHOSTS=116, 1523 MATOP_GET_LOCAL_SUB_MATRIX=117, 1524 MATOP_RESTORE_LOCALSUB_MATRIX=118, 1525 MATOP_MULT_DIAGONAL_BLOCK=119, 1526 MATOP_HERMITIAN_TRANSPOSE=120, 1527 MATOP_MULT_HERMITIAN_TRANSPOSE=121, 1528 MATOP_MULT_HERMITIAN_TRANS_ADD=122, 1529 MATOP_GET_MULTI_PROC_BLOCK=123, 1530 MATOP_FIND_NONZERO_ROWS=124, 1531 MATOP_GET_COLUMN_NORMS=125, 1532 MATOP_INVERT_BLOCK_DIAGONAL=126, 1533 /* MATOP_PLACEHOLDER_127=127, */ 1534 MATOP_CREATE_SUB_MATRICES_MPI=128, 1535 MATOP_SET_VALUES_BATCH=129, 1536 MATOP_TRANSPOSE_MAT_MULT=130, 1537 MATOP_TRANSPOSE_MAT_MULT_SYMBO=131, 1538 MATOP_TRANSPOSE_MAT_MULT_NUMER=132, 1539 MATOP_TRANSPOSE_COLORING_CREAT=133, 1540 MATOP_TRANS_COLORING_APPLY_SPT=134, 1541 MATOP_TRANS_COLORING_APPLY_DEN=135, 1542 MATOP_RART=136, 1543 MATOP_RART_SYMBOLIC=137, 1544 MATOP_RART_NUMERIC=138, 1545 MATOP_SET_BLOCK_SIZES=139, 1546 MATOP_AYPX=140, 1547 MATOP_RESIDUAL=141, 1548 MATOP_FDCOLORING_SETUP=142, 1549 MATOP_MPICONCATENATESEQ=144, 1550 MATOP_DESTROYSUBMATRICES=145 1551 } MatOperation; 1552 PETSC_EXTERN PetscErrorCode MatSetOperation(Mat,MatOperation,void(*)(void)); 1553 PETSC_EXTERN PetscErrorCode MatGetOperation(Mat,MatOperation,void(**)(void)); 1554 PETSC_EXTERN PetscErrorCode MatHasOperation(Mat,MatOperation,PetscBool *); 1555 1556 PETSC_EXTERN PetscErrorCode MatShellSetOperation(Mat,MatOperation,void(*)(void)); 1557 PETSC_EXTERN PetscErrorCode MatShellGetOperation(Mat,MatOperation,void(**)(void)); 1558 PETSC_EXTERN PetscErrorCode MatShellSetContext(Mat,void*); 1559 PETSC_EXTERN PetscErrorCode MatShellTestMult(Mat,PetscErrorCode (*)(void*,Vec,Vec),Vec,void*,PetscBool*); 1560 PETSC_EXTERN PetscErrorCode MatShellTestMultTranspose(Mat,PetscErrorCode (*)(void*,Vec,Vec),Vec,void*,PetscBool*); 1561 PETSC_EXTERN PetscErrorCode MatShellSetManageScalingShifts(Mat); 1562 1563 /* 1564 Codes for matrices stored on disk. By default they are 1565 stored in a universal format. By changing the format with 1566 PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE); the matrices will 1567 be stored in a way natural for the matrix, for example dense matrices 1568 would be stored as dense. Matrices stored this way may only be 1569 read into matrices of the same type. 1570 */ 1571 #define MATRIX_BINARY_FORMAT_DENSE -1 1572 1573 PETSC_EXTERN PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat,PetscReal); 1574 PETSC_EXTERN PetscErrorCode MatISGetLocalMat(Mat,Mat*); 1575 PETSC_EXTERN PetscErrorCode MatISRestoreLocalMat(Mat,Mat*); 1576 PETSC_EXTERN PetscErrorCode MatISSetLocalMat(Mat,Mat); 1577 PETSC_EXTERN PetscErrorCode MatISGetMPIXAIJ(Mat,MatReuse,Mat*); 1578 1579 /*S 1580 MatNullSpace - Object that removes a null space from a vector, i.e. 1581 orthogonalizes the vector to a subsapce 1582 1583 Level: advanced 1584 1585 Concepts: matrix; linear operator, null space 1586 1587 Users manual sections: 1588 . sec_singular 1589 1590 .seealso: MatNullSpaceCreate() 1591 S*/ 1592 typedef struct _p_MatNullSpace* MatNullSpace; 1593 1594 PETSC_EXTERN PetscErrorCode MatNullSpaceCreate(MPI_Comm,PetscBool ,PetscInt,const Vec[],MatNullSpace*); 1595 PETSC_EXTERN PetscErrorCode MatNullSpaceSetFunction(MatNullSpace,PetscErrorCode (*)(MatNullSpace,Vec,void*),void*); 1596 PETSC_EXTERN PetscErrorCode MatNullSpaceDestroy(MatNullSpace*); 1597 PETSC_EXTERN PetscErrorCode MatNullSpaceRemove(MatNullSpace,Vec); 1598 PETSC_EXTERN PetscErrorCode MatGetNullSpace(Mat, MatNullSpace *); 1599 PETSC_EXTERN PetscErrorCode MatGetTransposeNullSpace(Mat, MatNullSpace *); 1600 PETSC_EXTERN PetscErrorCode MatSetTransposeNullSpace(Mat,MatNullSpace); 1601 PETSC_EXTERN PetscErrorCode MatSetNullSpace(Mat,MatNullSpace); 1602 PETSC_EXTERN PetscErrorCode MatSetNearNullSpace(Mat,MatNullSpace); 1603 PETSC_EXTERN PetscErrorCode MatGetNearNullSpace(Mat,MatNullSpace*); 1604 PETSC_EXTERN PetscErrorCode MatNullSpaceTest(MatNullSpace,Mat,PetscBool *); 1605 PETSC_EXTERN PetscErrorCode MatNullSpaceView(MatNullSpace,PetscViewer); 1606 PETSC_EXTERN PetscErrorCode MatNullSpaceGetVecs(MatNullSpace,PetscBool*,PetscInt*,const Vec**); 1607 PETSC_EXTERN PetscErrorCode MatNullSpaceCreateRigidBody(Vec,MatNullSpace*); 1608 1609 PETSC_EXTERN PetscErrorCode MatReorderingSeqSBAIJ(Mat,IS); 1610 PETSC_EXTERN PetscErrorCode MatMPISBAIJSetHashTableFactor(Mat,PetscReal); 1611 PETSC_EXTERN PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat,PetscInt *); 1612 PETSC_EXTERN PetscErrorCode MatSeqBAIJInvertBlockDiagonal(Mat); 1613 1614 PETSC_EXTERN PetscErrorCode MatCreateMAIJ(Mat,PetscInt,Mat*); 1615 PETSC_EXTERN PetscErrorCode MatMAIJRedimension(Mat,PetscInt,Mat*); 1616 PETSC_EXTERN PetscErrorCode MatMAIJGetAIJ(Mat,Mat*); 1617 1618 PETSC_EXTERN PetscErrorCode MatComputeExplicitOperator(Mat,Mat*); 1619 PETSC_EXTERN PetscErrorCode MatComputeExplicitOperatorTranspose(Mat,Mat*); 1620 1621 PETSC_EXTERN PetscErrorCode MatDiagonalScaleLocal(Mat,Vec); 1622 1623 PETSC_EXTERN PetscErrorCode MatCreateMFFD(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,Mat*); 1624 PETSC_EXTERN PetscErrorCode MatMFFDSetBase(Mat,Vec,Vec); 1625 PETSC_EXTERN PetscErrorCode MatMFFDSetFunction(Mat,PetscErrorCode(*)(void*,Vec,Vec),void*); 1626 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioni(Mat,PetscErrorCode (*)(void*,PetscInt,Vec,PetscScalar*)); 1627 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctioniBase(Mat,PetscErrorCode (*)(void*,Vec)); 1628 PETSC_EXTERN PetscErrorCode MatMFFDSetHHistory(Mat,PetscScalar[],PetscInt); 1629 PETSC_EXTERN PetscErrorCode MatMFFDResetHHistory(Mat); 1630 PETSC_EXTERN PetscErrorCode MatMFFDSetFunctionError(Mat,PetscReal); 1631 PETSC_EXTERN PetscErrorCode MatMFFDSetPeriod(Mat,PetscInt); 1632 PETSC_EXTERN PetscErrorCode MatMFFDGetH(Mat,PetscScalar *); 1633 PETSC_EXTERN PetscErrorCode MatMFFDSetOptionsPrefix(Mat,const char[]); 1634 PETSC_EXTERN PetscErrorCode MatMFFDCheckPositivity(void*,Vec,Vec,PetscScalar*); 1635 PETSC_EXTERN PetscErrorCode MatMFFDSetCheckh(Mat,PetscErrorCode (*)(void*,Vec,Vec,PetscScalar*),void*); 1636 1637 /*S 1638 MatMFFD - A data structured used to manage the computation of the h differencing parameter for matrix-free 1639 Jacobian vector products 1640 1641 Notes: MATMFFD is a specific MatType which uses the MatMFFD data structure 1642 1643 MatMFFD*() methods actually take the Mat as their first argument. Not a MatMFFD data structure 1644 1645 Level: developer 1646 1647 .seealso: MATMFFD, MatCreateMFFD(), MatMFFDSetFuction(), MatMFFDSetType(), MatMFFDRegister() 1648 S*/ 1649 typedef struct _p_MatMFFD* MatMFFD; 1650 1651 /*J 1652 MatMFFDType - algorithm used to compute the h used in computing matrix-vector products via differencing of the function 1653 1654 Level: beginner 1655 1656 .seealso: MatMFFDSetType(), MatMFFDRegister() 1657 J*/ 1658 typedef const char* MatMFFDType; 1659 #define MATMFFD_DS "ds" 1660 #define MATMFFD_WP "wp" 1661 1662 PETSC_EXTERN PetscErrorCode MatMFFDSetType(Mat,MatMFFDType); 1663 PETSC_EXTERN PetscErrorCode MatMFFDRegister(const char[],PetscErrorCode (*)(MatMFFD)); 1664 1665 PETSC_EXTERN PetscErrorCode MatMFFDDSSetUmin(Mat,PetscReal); 1666 PETSC_EXTERN PetscErrorCode MatMFFDWPSetComputeNormU(Mat,PetscBool ); 1667 1668 PETSC_EXTERN PetscErrorCode MatFDColoringSetType(MatFDColoring,MatMFFDType); 1669 1670 PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutMatrix(PetscViewer, PetscInt, PetscInt, PetscReal *); 1671 PETSC_EXTERN PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer, PetscInt, PetscInt, PetscInt *, PetscInt *, PetscReal *); 1672 1673 /* 1674 PETSc interface to MUMPS 1675 */ 1676 #ifdef PETSC_HAVE_MUMPS 1677 PETSC_EXTERN PetscErrorCode MatMumpsSetIcntl(Mat,PetscInt,PetscInt); 1678 PETSC_EXTERN PetscErrorCode MatMumpsGetIcntl(Mat,PetscInt,PetscInt*); 1679 PETSC_EXTERN PetscErrorCode MatMumpsSetCntl(Mat,PetscInt,PetscReal); 1680 PETSC_EXTERN PetscErrorCode MatMumpsGetCntl(Mat,PetscInt,PetscReal*); 1681 1682 PETSC_EXTERN PetscErrorCode MatMumpsGetInfo(Mat,PetscInt,PetscInt*); 1683 PETSC_EXTERN PetscErrorCode MatMumpsGetInfog(Mat,PetscInt,PetscInt*); 1684 PETSC_EXTERN PetscErrorCode MatMumpsGetRinfo(Mat,PetscInt,PetscReal*); 1685 PETSC_EXTERN PetscErrorCode MatMumpsGetRinfog(Mat,PetscInt,PetscReal*); 1686 PETSC_EXTERN PetscErrorCode MatMumpsGetInverse(Mat,Mat); 1687 #endif 1688 1689 /* 1690 PETSc interface to Mkl_Pardiso 1691 */ 1692 #ifdef PETSC_HAVE_MKL_PARDISO 1693 PETSC_EXTERN PetscErrorCode MatMkl_PardisoSetCntl(Mat,PetscInt,PetscInt); 1694 #endif 1695 1696 /* 1697 PETSc interface to Mkl_CPardiso 1698 */ 1699 #ifdef PETSC_HAVE_MKL_CPARDISO 1700 PETSC_EXTERN PetscErrorCode MatMkl_CPardisoSetCntl(Mat,PetscInt,PetscInt); 1701 #endif 1702 1703 /* 1704 PETSc interface to SUPERLU 1705 */ 1706 #ifdef PETSC_HAVE_SUPERLU 1707 PETSC_EXTERN PetscErrorCode MatSuperluSetILUDropTol(Mat,PetscReal); 1708 #endif 1709 1710 /* 1711 PETSc interface to SUPERLU_DIST 1712 */ 1713 #ifdef PETSC_HAVE_SUPERLU_DIST 1714 PETSC_EXTERN PetscErrorCode MatSuperluDistGetDiagU(Mat,PetscScalar*); 1715 #endif 1716 1717 /* 1718 PETSc interface to STRUMPACK 1719 */ 1720 #ifdef PETSC_HAVE_STRUMPACK 1721 /*E 1722 MatSTRUMPACKReordering - sparsity reducing ordering to be used in STRUMPACK 1723 1724 Level: intermediate 1725 E*/ 1726 typedef enum {MAT_STRUMPACK_NATURAL=0, 1727 MAT_STRUMPACK_METIS=1, 1728 MAT_STRUMPACK_PARMETIS=2, 1729 MAT_STRUMPACK_SCOTCH=3, 1730 MAT_STRUMPACK_PTSCOTCH=4, 1731 MAT_STRUMPACK_RCM=5} MatSTRUMPACKReordering; 1732 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetReordering(Mat,MatSTRUMPACKReordering); 1733 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetColPerm(Mat,PetscBool); 1734 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSRelTol(Mat,PetscReal); 1735 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSAbsTol(Mat,PetscReal); 1736 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMinSepSize(Mat,PetscInt); 1737 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSMaxRank(Mat,PetscInt); 1738 PETSC_EXTERN PetscErrorCode MatSTRUMPACKSetHSSLeafSize(Mat,PetscInt); 1739 #endif 1740 1741 1742 #ifdef PETSC_HAVE_CUDA 1743 /*E 1744 MatCUSPARSEStorageFormat - indicates the storage format for CUSPARSE (GPU) 1745 matrices. 1746 1747 Not Collective 1748 1749 + MAT_CUSPARSE_CSR - Compressed Sparse Row 1750 . MAT_CUSPARSE_ELL - Ellpack (requires CUDA 4.2 or later). 1751 - MAT_CUSPARSE_HYB - Hybrid, a combination of Ellpack and Coordinate format (requires CUDA 4.2 or later). 1752 1753 Level: intermediate 1754 1755 Any additions/changes here MUST also be made in include/petsc/finclude/petscmat.h 1756 1757 .seealso: MatCUSPARSESetFormat(), MatCUSPARSEFormatOperation 1758 E*/ 1759 1760 typedef enum {MAT_CUSPARSE_CSR, MAT_CUSPARSE_ELL, MAT_CUSPARSE_HYB} MatCUSPARSEStorageFormat; 1761 1762 /* these will be strings associated with enumerated type defined above */ 1763 PETSC_EXTERN const char *const MatCUSPARSEStorageFormats[]; 1764 1765 /*E 1766 MatCUSPARSEFormatOperation - indicates the operation of CUSPARSE (GPU) 1767 matrices whose operation should use a particular storage format. 1768 1769 Not Collective 1770 1771 + MAT_CUSPARSE_MULT_DIAG - sets the storage format for the diagonal matrix in the parallel MatMult 1772 . MAT_CUSPARSE_MULT_OFFDIAG - sets the storage format for the offdiagonal matrix in the parallel MatMult 1773 . MAT_CUSPARSE_MULT - sets the storage format for the entire matrix in the serial (single GPU) MatMult 1774 - MAT_CUSPARSE_ALL - sets the storage format for all CUSPARSE (GPU) matrices 1775 1776 Level: intermediate 1777 1778 .seealso: MatCUSPARSESetFormat(), MatCUSPARSEStorageFormat 1779 E*/ 1780 typedef enum {MAT_CUSPARSE_MULT_DIAG, MAT_CUSPARSE_MULT_OFFDIAG, MAT_CUSPARSE_MULT, MAT_CUSPARSE_ALL} MatCUSPARSEFormatOperation; 1781 1782 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJCUSPARSE(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 1783 PETSC_EXTERN PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 1784 PETSC_EXTERN PetscErrorCode MatCUSPARSESetFormat(Mat,MatCUSPARSEFormatOperation,MatCUSPARSEStorageFormat); 1785 #endif 1786 1787 #if defined(PETSC_HAVE_VIENNACL) 1788 PETSC_EXTERN PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm,PetscInt,PetscInt,PetscInt,const PetscInt[],Mat*); 1789 PETSC_EXTERN PetscErrorCode MatCreateAIJViennaCL(MPI_Comm,PetscInt,PetscInt,PetscInt,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[],Mat*); 1790 #endif 1791 1792 /* 1793 PETSc interface to FFTW 1794 */ 1795 #if defined(PETSC_HAVE_FFTW) 1796 PETSC_EXTERN PetscErrorCode VecScatterPetscToFFTW(Mat,Vec,Vec); 1797 PETSC_EXTERN PetscErrorCode VecScatterFFTWToPetsc(Mat,Vec,Vec); 1798 PETSC_EXTERN PetscErrorCode MatCreateVecsFFTW(Mat,Vec*,Vec*,Vec*); 1799 #endif 1800 1801 PETSC_EXTERN PetscErrorCode MatCreateNest(MPI_Comm,PetscInt,const IS[],PetscInt,const IS[],const Mat[],Mat*); 1802 PETSC_EXTERN PetscErrorCode MatNestGetSize(Mat,PetscInt*,PetscInt*); 1803 PETSC_EXTERN PetscErrorCode MatNestGetISs(Mat,IS[],IS[]); 1804 PETSC_EXTERN PetscErrorCode MatNestGetLocalISs(Mat,IS[],IS[]); 1805 PETSC_EXTERN PetscErrorCode MatNestGetSubMats(Mat,PetscInt*,PetscInt*,Mat***); 1806 PETSC_EXTERN PetscErrorCode MatNestGetSubMat(Mat,PetscInt,PetscInt,Mat*); 1807 PETSC_EXTERN PetscErrorCode MatNestSetVecType(Mat,VecType); 1808 PETSC_EXTERN PetscErrorCode MatNestSetSubMats(Mat,PetscInt,const IS[],PetscInt,const IS[],const Mat[]); 1809 PETSC_EXTERN PetscErrorCode MatNestSetSubMat(Mat,PetscInt,PetscInt,Mat); 1810 1811 PETSC_EXTERN PetscErrorCode MatChop(Mat,PetscReal); 1812 PETSC_EXTERN PetscErrorCode MatComputeBandwidth(Mat,PetscReal,PetscInt*); 1813 1814 PETSC_EXTERN PetscErrorCode MatSubdomainsCreateCoalesce(Mat,PetscInt,PetscInt*,IS**); 1815 1816 PETSC_EXTERN PetscErrorCode MatPreallocatorPreallocate(Mat,PetscBool,Mat); 1817 1818 PETSC_INTERN PetscErrorCode MatHeaderMerge(Mat,Mat*); 1819 PETSC_EXTERN PetscErrorCode MatHeaderReplace(Mat,Mat*); 1820 1821 #endif 1822