1936c5a86SJed Brown /* 2936c5a86SJed Brown A star forest (SF) describes a communication pattern 3936c5a86SJed Brown */ 4936c5a86SJed Brown #if !defined(__PETSCSF_H) 5936c5a86SJed Brown #define __PETSCSF_H 62c8e378dSBarry Smith #include <petscsys.h> 70c312b8eSJed Brown #include <petscsftypes.h> 8936c5a86SJed Brown 9014dd563SJed Brown PETSC_EXTERN PetscClassId PETSCSF_CLASSID; 10936c5a86SJed Brown 115af141bcSJed Brown /*J 125af141bcSJed Brown PetscSFType - String with the name of a PetscSF method or the creation function 135af141bcSJed Brown with an optional dynamic library name, for example 145af141bcSJed Brown http://www.mcs.anl.gov/petsc/lib.so:mysfcreate() 155af141bcSJed Brown 165af141bcSJed Brown Level: beginner 175af141bcSJed Brown 18ed658588SBarry Smith Notes: The two approaches provided are 19ed658588SBarry Smith $ PETSCSFBASIC which uses MPI 1 message passing to perform the communication and 20ed658588SBarry Smith $ PETSCSFWINDOW which uses MPI 2 one-sided operations to perform the communication, this may be more efficient, 21ed658588SBarry Smith $ but may not be available for all MPI distributions. In particular OpenMPI has bugs in its one-sided 22ed658588SBarry Smith $ operations that prevent its use. 23ed658588SBarry Smith 245af141bcSJed Brown .seealso: PetscSFSetType(), PetscSF 255af141bcSJed Brown J*/ 265af141bcSJed Brown typedef const char *PetscSFType; 27ac762476SJed Brown #define PETSCSFBASIC "basic" 28ed658588SBarry Smith #define PETSCSFWINDOW "window" 295af141bcSJed Brown 30936c5a86SJed Brown /*E 315af141bcSJed Brown PetscSFWindowSyncType - Type of synchronization for PETSCSFWINDOW 32936c5a86SJed Brown 335af141bcSJed Brown $ PETSCSF_WINDOW_SYNC_FENCE - simplest model, synchronizing across communicator 345af141bcSJed Brown $ PETSCSF_WINDOW_SYNC_LOCK - passive model, less synchronous, requires less setup than PETSCSF_WINDOW_SYNC_ACTIVE, but may require more handshakes 355af141bcSJed Brown $ PETSCSF_WINDOW_SYNC_ACTIVE - active model, provides most information to MPI implementation, needs to construct 2-way process groups (more setup than PETSCSF_WINDOW_SYNC_LOCK) 36936c5a86SJed Brown 37e84a5f06SJed Brown Level: advanced 38936c5a86SJed Brown 39e84a5f06SJed Brown .seealso: PetscSFWindowSetSyncType(), PetscSFWindowGetSyncType() 40936c5a86SJed Brown E*/ 415af141bcSJed Brown typedef enum {PETSCSF_WINDOW_SYNC_FENCE,PETSCSF_WINDOW_SYNC_LOCK,PETSCSF_WINDOW_SYNC_ACTIVE} PetscSFWindowSyncType; 425af141bcSJed Brown PETSC_EXTERN const char *const PetscSFWindowSyncTypes[]; 43936c5a86SJed Brown 44e84a5f06SJed Brown /*E 45e84a5f06SJed Brown PetscSFDuplicateOption - Aspects to preserve when duplicating a PetscSF 46e84a5f06SJed Brown 47e84a5f06SJed Brown $ PETSCSF_DUPLICATE_CONFONLY - configuration only, user must call PetscSFSetGraph() 48e84a5f06SJed Brown $ PETSCSF_DUPLICATE_RANKS - communication ranks preserved, but different graph (allows simpler setup after calling PetscSFSetGraph()) 49e84a5f06SJed Brown $ PETSCSF_DUPLICATE_GRAPH - entire graph duplicated 50e84a5f06SJed Brown 51e84a5f06SJed Brown Level: beginner 52e84a5f06SJed Brown 53e84a5f06SJed Brown .seealso: PetscSFDuplicate() 54e84a5f06SJed Brown E*/ 55e84a5f06SJed Brown typedef enum {PETSCSF_DUPLICATE_CONFONLY,PETSCSF_DUPLICATE_RANKS,PETSCSF_DUPLICATE_GRAPH} PetscSFDuplicateOption; 56e84a5f06SJed Brown PETSC_EXTERN const char *const PetscSFDuplicateOptions[]; 57090c6444SJed Brown 58adc40e5bSBarry Smith PETSC_EXTERN PetscFunctionList PetscSFList; 59bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFRegister(const char[],PetscErrorCode (*)(PetscSF)); 605af141bcSJed Brown 61607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFInitializePackage(void); 62014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFFinalizePackage(void); 63014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFCreate(MPI_Comm comm,PetscSF*); 64014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFDestroy(PetscSF*); 655af141bcSJed Brown PETSC_EXTERN PetscErrorCode PetscSFSetType(PetscSF,PetscSFType); 66014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFView(PetscSF,PetscViewer); 675af141bcSJed Brown PETSC_EXTERN PetscErrorCode PetscSFSetUp(PetscSF); 68014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFSetFromOptions(PetscSF); 69e84a5f06SJed Brown PETSC_EXTERN PetscErrorCode PetscSFDuplicate(PetscSF,PetscSFDuplicateOption,PetscSF*); 705af141bcSJed Brown PETSC_EXTERN PetscErrorCode PetscSFWindowSetSyncType(PetscSF,PetscSFWindowSyncType); 715af141bcSJed Brown PETSC_EXTERN PetscErrorCode PetscSFWindowGetSyncType(PetscSF,PetscSFWindowSyncType*); 72014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFSetRankOrder(PetscSF,PetscBool); 7363f4a732SJed Brown PETSC_EXTERN PetscErrorCode PetscSFSetGraph(PetscSF,PetscInt,PetscInt,const PetscInt*,PetscCopyMode,const PetscSFNode*,PetscCopyMode); 74014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFGetGraph(PetscSF,PetscInt *nroots,PetscInt *nleaves,const PetscInt **ilocal,const PetscSFNode **iremote); 75f723732fSJed Brown PETSC_EXTERN PetscErrorCode PetscSFGetLeafRange(PetscSF,PetscInt*,PetscInt*); 76014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFCreateEmbeddedSF(PetscSF,PetscInt nroots,const PetscInt *selected,PetscSF *newsf); 77*2f5fb4c2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSFCreateEmbeddedLeafSF(PetscSF,PetscInt,const PetscInt *, PetscSF *); 78014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFReset(PetscSF); 795b6cb184SJed Brown PETSC_EXTERN PetscErrorCode PetscSFGetRanks(PetscSF,PetscInt*,const PetscMPIInt**,const PetscInt**,const PetscInt**,const PetscInt**); 80014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFGetGroups(PetscSF,MPI_Group*,MPI_Group*); 81014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFGetMultiSF(PetscSF,PetscSF*); 82014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFCreateInverseSF(PetscSF,PetscSF*); 83936c5a86SJed Brown 84936c5a86SJed Brown /* broadcasts rootdata to leafdata */ 85894dd566SJed Brown PETSC_EXTERN PetscErrorCode PetscSFBcastBegin(PetscSF,MPI_Datatype,const void *rootdata,void *leafdata) 86894dd566SJed Brown PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2); 87894dd566SJed Brown PETSC_EXTERN PetscErrorCode PetscSFBcastEnd(PetscSF,MPI_Datatype,const void *rootdata,void *leafdata) 88894dd566SJed Brown PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2); 89936c5a86SJed Brown /* Reduce leafdata into rootdata using provided operation */ 90894dd566SJed Brown PETSC_EXTERN PetscErrorCode PetscSFReduceBegin(PetscSF,MPI_Datatype,const void *leafdata,void *rootdata,MPI_Op) 9119436ca2SJed Brown PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2); 92894dd566SJed Brown PETSC_EXTERN PetscErrorCode PetscSFReduceEnd(PetscSF,MPI_Datatype,const void *leafdata,void *rootdata,MPI_Op) 9319436ca2SJed Brown PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2); 94936c5a86SJed Brown /* Atomically modifies (using provided operation) rootdata using leafdata from each leaf, value at root at time of modification is returned in leafupdate. */ 95894dd566SJed Brown PETSC_EXTERN PetscErrorCode PetscSFFetchAndOpBegin(PetscSF,MPI_Datatype,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op) 96894dd566SJed Brown PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2) PetscAttrMPIPointerWithType(5,2); 97894dd566SJed Brown PETSC_EXTERN PetscErrorCode PetscSFFetchAndOpEnd(PetscSF,MPI_Datatype,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op) 98894dd566SJed Brown PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2) PetscAttrMPIPointerWithType(5,2); 99936c5a86SJed Brown /* Compute the degree of every root vertex (number of leaves in its star) */ 100014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFComputeDegreeBegin(PetscSF,const PetscInt **degree); 101014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFComputeDegreeEnd(PetscSF,const PetscInt **degree); 102936c5a86SJed Brown /* Concatenate data from all leaves into roots */ 103894dd566SJed Brown PETSC_EXTERN PetscErrorCode PetscSFGatherBegin(PetscSF,MPI_Datatype,const void *leafdata,void *multirootdata) 104894dd566SJed Brown PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2); 105894dd566SJed Brown PETSC_EXTERN PetscErrorCode PetscSFGatherEnd(PetscSF,MPI_Datatype,const void *leafdata,void *multirootdata) 106894dd566SJed Brown PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2); 107936c5a86SJed Brown /* Distribute distinct values to each leaf from roots */ 108894dd566SJed Brown PETSC_EXTERN PetscErrorCode PetscSFScatterBegin(PetscSF,MPI_Datatype,const void *multirootdata,void *leafdata) 109894dd566SJed Brown PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2); 110894dd566SJed Brown PETSC_EXTERN PetscErrorCode PetscSFScatterEnd(PetscSF,MPI_Datatype,const void *multirootdata,void *leafdata) 111894dd566SJed Brown PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2); 112936c5a86SJed Brown 113a7b3aa13SAta Mesgarnejad PETSC_EXTERN PetscErrorCode PetscSFCompose(PetscSF,PetscSF,PetscSF*); 114a7b3aa13SAta Mesgarnejad 1158bfbc91cSJed Brown #if defined(MPI_REPLACE) 1168bfbc91cSJed Brown # define MPIU_REPLACE MPI_REPLACE 1178bfbc91cSJed Brown #else 1188bfbc91cSJed Brown /* When using an old MPI such that MPI_REPLACE is not defined, we do not pass MPI_REPLACE to MPI at all. Instead, we 1198bfbc91cSJed Brown * use it as a flag for our own reducer in the PETSCSFBASIC implementation. This could be any unique value unlikely to 1208bfbc91cSJed Brown * collide with another MPI_Op so we'll just use the value that has been used by every version of MPICH since 1218bfbc91cSJed Brown * MPICH2-1.0.6. */ 1228bfbc91cSJed Brown # define MPIU_REPLACE (MPI_Op)(0x5800000d) 1238bfbc91cSJed Brown #endif 1248bfbc91cSJed Brown 125936c5a86SJed Brown #endif 126