xref: /petsc/include/petscsf.h (revision dd5b3ca66ca4de5e00e985c205d0f80060c552e8)
1936c5a86SJed Brown /*
2936c5a86SJed Brown    A star forest (SF) describes a communication pattern
3936c5a86SJed Brown */
426bd1501SBarry Smith #if !defined(PETSCSF_H)
526bd1501SBarry Smith #define PETSCSF_H
62c8e378dSBarry Smith #include <petscsys.h>
7*dd5b3ca6SJunchao Zhang #include <petscis.h>
80c312b8eSJed Brown #include <petscsftypes.h>
9936c5a86SJed Brown 
10014dd563SJed Brown PETSC_EXTERN PetscClassId PETSCSF_CLASSID;
11936c5a86SJed Brown 
125af141bcSJed Brown /*J
13*dd5b3ca6SJunchao Zhang     PetscSFType - String with the name of a PetscSF type
145af141bcSJed Brown 
155af141bcSJed Brown    Level: beginner
165af141bcSJed Brown 
175af141bcSJed Brown .seealso: PetscSFSetType(), PetscSF
185af141bcSJed Brown J*/
195af141bcSJed Brown typedef const char *PetscSFType;
20ac762476SJed Brown #define PETSCSFBASIC      "basic"
21*dd5b3ca6SJunchao Zhang #define PETSCSFALLGATHERV "allgatherv"
22*dd5b3ca6SJunchao Zhang #define PETSCSFALLGATHER  "allgather"
23*dd5b3ca6SJunchao Zhang #define PETSCSFGATHERV    "gatherv"
24*dd5b3ca6SJunchao Zhang #define PETSCSFGATHER     "gather"
25*dd5b3ca6SJunchao Zhang #define PETSCSFALLTOALL   "alltoall"
26ed658588SBarry Smith #define PETSCSFWINDOW     "window"
275af141bcSJed Brown 
28936c5a86SJed Brown /*E
29*dd5b3ca6SJunchao Zhang    PetscSFPattern - Pattern of the PetscSF graph
30*dd5b3ca6SJunchao Zhang 
31*dd5b3ca6SJunchao Zhang $  PETSCSF_PATTERN_GENERAL   - A general graph. One sets the graph with PetscSFSetGraph() and usually does not use this enum directly.
32*dd5b3ca6SJunchao Zhang $  PETSCSF_PATTERN_ALLGATHER - A graph that every rank gathers all roots from all ranks (like MPI_Allgather/v). One sets the graph with PetscSFSetGraphWithPattern().
33*dd5b3ca6SJunchao Zhang $  PETSCSF_PATTERN_GATHER    - A graph that rank 0 gathers all roots from all ranks (like MPI_Gather/v with root=0). One sets the graph with PetscSFSetGraphWithPattern().
34*dd5b3ca6SJunchao Zhang $  PETSCSF_PATTERN_ALLTOALL  - A graph that every rank gathers different roots from all ranks (like MPI_Alltoall). One sets the graph with PetscSFSetGraphWithPattern().
35*dd5b3ca6SJunchao Zhang                                In an ALLTOALL graph, we assume each process has <size> leaves and <size> roots, with each leaf connecting to a remote root. Here <size> is
36*dd5b3ca6SJunchao Zhang                                the size of the communicator. This does not mean one can not communicate multiple data items between a pair of processes. One just needs to
37*dd5b3ca6SJunchao Zhang                                create a new MPI datatype for the multiple data items, e.g., by MPI_Type_contiguous.
38*dd5b3ca6SJunchao Zhang    Level: beginner
39*dd5b3ca6SJunchao Zhang 
40*dd5b3ca6SJunchao Zhang .seealso: PetscSFSetGraph(), PetscSFSetGraphWithPattern()
41*dd5b3ca6SJunchao Zhang E*/
42*dd5b3ca6SJunchao Zhang typedef enum {PETSCSF_PATTERN_GENERAL=0,PETSCSF_PATTERN_ALLGATHER,PETSCSF_PATTERN_GATHER,PETSCSF_PATTERN_ALLTOALL} PetscSFPattern;
43*dd5b3ca6SJunchao Zhang 
44*dd5b3ca6SJunchao Zhang /*E
455af141bcSJed Brown     PetscSFWindowSyncType - Type of synchronization for PETSCSFWINDOW
46936c5a86SJed Brown 
475af141bcSJed Brown $  PETSCSF_WINDOW_SYNC_FENCE - simplest model, synchronizing across communicator
485af141bcSJed Brown $  PETSCSF_WINDOW_SYNC_LOCK - passive model, less synchronous, requires less setup than PETSCSF_WINDOW_SYNC_ACTIVE, but may require more handshakes
495af141bcSJed Brown $  PETSCSF_WINDOW_SYNC_ACTIVE - active model, provides most information to MPI implementation, needs to construct 2-way process groups (more setup than PETSCSF_WINDOW_SYNC_LOCK)
50936c5a86SJed Brown 
51e84a5f06SJed Brown    Level: advanced
52936c5a86SJed Brown 
53e84a5f06SJed Brown .seealso: PetscSFWindowSetSyncType(), PetscSFWindowGetSyncType()
54936c5a86SJed Brown E*/
555af141bcSJed Brown typedef enum {PETSCSF_WINDOW_SYNC_FENCE,PETSCSF_WINDOW_SYNC_LOCK,PETSCSF_WINDOW_SYNC_ACTIVE} PetscSFWindowSyncType;
565af141bcSJed Brown PETSC_EXTERN const char *const PetscSFWindowSyncTypes[];
57936c5a86SJed Brown 
58e84a5f06SJed Brown /*E
59e84a5f06SJed Brown     PetscSFDuplicateOption - Aspects to preserve when duplicating a PetscSF
60e84a5f06SJed Brown 
61e84a5f06SJed Brown $  PETSCSF_DUPLICATE_CONFONLY - configuration only, user must call PetscSFSetGraph()
62e84a5f06SJed Brown $  PETSCSF_DUPLICATE_RANKS - communication ranks preserved, but different graph (allows simpler setup after calling PetscSFSetGraph())
63e84a5f06SJed Brown $  PETSCSF_DUPLICATE_GRAPH - entire graph duplicated
64e84a5f06SJed Brown 
65e84a5f06SJed Brown    Level: beginner
66e84a5f06SJed Brown 
67e84a5f06SJed Brown .seealso: PetscSFDuplicate()
68e84a5f06SJed Brown E*/
69e84a5f06SJed Brown typedef enum {PETSCSF_DUPLICATE_CONFONLY,PETSCSF_DUPLICATE_RANKS,PETSCSF_DUPLICATE_GRAPH} PetscSFDuplicateOption;
70e84a5f06SJed Brown PETSC_EXTERN const char *const PetscSFDuplicateOptions[];
71090c6444SJed Brown 
72adc40e5bSBarry Smith PETSC_EXTERN PetscFunctionList PetscSFList;
73bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFRegister(const char[],PetscErrorCode (*)(PetscSF));
745af141bcSJed Brown 
75607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFInitializePackage(void);
76014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFFinalizePackage(void);
7779c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFCreate(MPI_Comm,PetscSF*);
78014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFDestroy(PetscSF*);
795af141bcSJed Brown PETSC_EXTERN PetscErrorCode PetscSFSetType(PetscSF,PetscSFType);
8029046d53SLisandro Dalcin PETSC_EXTERN PetscErrorCode PetscSFGetType(PetscSF,PetscSFType*);
81014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFView(PetscSF,PetscViewer);
823a93e3b7SToby Isaac PETSC_STATIC_INLINE PetscErrorCode PetscSFViewFromOptions(PetscSF A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);}
835af141bcSJed Brown PETSC_EXTERN PetscErrorCode PetscSFSetUp(PetscSF);
84014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFSetFromOptions(PetscSF);
85e84a5f06SJed Brown PETSC_EXTERN PetscErrorCode PetscSFDuplicate(PetscSF,PetscSFDuplicateOption,PetscSF*);
865af141bcSJed Brown PETSC_EXTERN PetscErrorCode PetscSFWindowSetSyncType(PetscSF,PetscSFWindowSyncType);
875af141bcSJed Brown PETSC_EXTERN PetscErrorCode PetscSFWindowGetSyncType(PetscSF,PetscSFWindowSyncType*);
88014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFSetRankOrder(PetscSF,PetscBool);
8963f4a732SJed Brown PETSC_EXTERN PetscErrorCode PetscSFSetGraph(PetscSF,PetscInt,PetscInt,const PetscInt*,PetscCopyMode,const PetscSFNode*,PetscCopyMode);
90*dd5b3ca6SJunchao Zhang PETSC_EXTERN PetscErrorCode PetscSFSetGraphWithPattern(PetscSF,PetscLayout,PetscSFPattern);
9179c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFGetGraph(PetscSF,PetscInt*,PetscInt*,const PetscInt**,const PetscSFNode**);
92f723732fSJed Brown PETSC_EXTERN PetscErrorCode PetscSFGetLeafRange(PetscSF,PetscInt*,PetscInt*);
9379c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFCreateEmbeddedSF(PetscSF,PetscInt,const PetscInt*,PetscSF*);
942f5fb4c2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSFCreateEmbeddedLeafSF(PetscSF,PetscInt,const PetscInt *, PetscSF *);
95014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFReset(PetscSF);
96b5a8e515SJed Brown PETSC_EXTERN PetscErrorCode PetscSFSetUpRanks(PetscSF,MPI_Group);
97dec1416fSJunchao Zhang PETSC_EXTERN PetscErrorCode PetscSFGetRootRanks(PetscSF,PetscInt*,const PetscMPIInt**,const PetscInt**,const PetscInt**,const PetscInt**);
988750ddebSJunchao Zhang PETSC_EXTERN PetscErrorCode PetscSFGetLeafRanks(PetscSF,PetscInt*,const PetscMPIInt**,const PetscInt**,const PetscInt**);
99014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFGetGroups(PetscSF,MPI_Group*,MPI_Group*);
100014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFGetMultiSF(PetscSF,PetscSF*);
101014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFCreateInverseSF(PetscSF,PetscSF*);
102936c5a86SJed Brown 
1033482bfa8SJunchao Zhang /* Reduce rootdata to leafdata using provided operation */
1043482bfa8SJunchao Zhang PETSC_EXTERN PetscErrorCode PetscSFBcastAndOpBegin(PetscSF,MPI_Datatype,const void*,void*,MPI_Op)
1053482bfa8SJunchao Zhang   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
1063482bfa8SJunchao Zhang PETSC_EXTERN PetscErrorCode PetscSFBcastAndOpEnd(PetscSF,MPI_Datatype,const void*,void*,MPI_Op)
1073482bfa8SJunchao Zhang   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
108936c5a86SJed Brown /* Reduce leafdata into rootdata using provided operation */
10979c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFReduceBegin(PetscSF,MPI_Datatype,const void*,void *,MPI_Op)
11019436ca2SJed Brown   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
11179c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFReduceEnd(PetscSF,MPI_Datatype,const void*,void*,MPI_Op)
11219436ca2SJed Brown   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
113936c5a86SJed Brown /* Atomically modifies (using provided operation) rootdata using leafdata from each leaf, value at root at time of modification is returned in leafupdate. */
11479c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFFetchAndOpBegin(PetscSF,MPI_Datatype,void*,const void*,void*,MPI_Op)
115894dd566SJed Brown   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2) PetscAttrMPIPointerWithType(5,2);
11679c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFFetchAndOpEnd(PetscSF,MPI_Datatype,void*,const void*,void*,MPI_Op)
117894dd566SJed Brown   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2) PetscAttrMPIPointerWithType(5,2);
118936c5a86SJed Brown /* Compute the degree of every root vertex (number of leaves in its star) */
11979c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFComputeDegreeBegin(PetscSF,const PetscInt**);
12079c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFComputeDegreeEnd(PetscSF,const PetscInt**);
12166dfcd1aSVaclav Hapla PETSC_EXTERN PetscErrorCode PetscSFComputeMultiRootOriginalNumbering(PetscSF,const PetscInt[],PetscInt*,PetscInt*[]);
122936c5a86SJed Brown /* Concatenate data from all leaves into roots */
12379c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFGatherBegin(PetscSF,MPI_Datatype,const void*,void*)
124894dd566SJed Brown   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
12579c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFGatherEnd(PetscSF,MPI_Datatype,const void*,void*)
126894dd566SJed Brown   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
127936c5a86SJed Brown /* Distribute distinct values to each leaf from roots */
12879c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFScatterBegin(PetscSF,MPI_Datatype,const void*,void*)
129894dd566SJed Brown   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
13079c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFScatterEnd(PetscSF,MPI_Datatype,const void*,void*)
131894dd566SJed Brown   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
132936c5a86SJed Brown 
133a7b3aa13SAta Mesgarnejad PETSC_EXTERN PetscErrorCode PetscSFCompose(PetscSF,PetscSF,PetscSF*);
134a7b3aa13SAta Mesgarnejad 
1358bfbc91cSJed Brown #if defined(MPI_REPLACE)
1368bfbc91cSJed Brown #  define MPIU_REPLACE MPI_REPLACE
1378bfbc91cSJed Brown #else
1388bfbc91cSJed Brown /* When using an old MPI such that MPI_REPLACE is not defined, we do not pass MPI_REPLACE to MPI at all.  Instead, we
1398bfbc91cSJed Brown  * use it as a flag for our own reducer in the PETSCSFBASIC implementation.  This could be any unique value unlikely to
1408bfbc91cSJed Brown  * collide with another MPI_Op so we'll just use the value that has been used by every version of MPICH since
1418bfbc91cSJed Brown  * MPICH2-1.0.6. */
1428bfbc91cSJed Brown #  define MPIU_REPLACE (MPI_Op)(0x5800000d)
1438bfbc91cSJed Brown #endif
1448bfbc91cSJed Brown 
145dec1416fSJunchao Zhang PETSC_DEPRECATED_FUNCTION("Use PetscSFGetRootRanks (since v3.12)")
146dec1416fSJunchao Zhang PETSC_STATIC_INLINE PetscErrorCode PetscSFGetRanks(PetscSF sf,PetscInt *nranks,const PetscMPIInt **ranks,const PetscInt **roffset,const PetscInt **rmine,const PetscInt **rremote) {
147dec1416fSJunchao Zhang   return PetscSFGetRootRanks(sf,nranks,ranks,roffset,rmine,rremote);
148dec1416fSJunchao Zhang }
149e2652d4cSJunchao Zhang 
150e2652d4cSJunchao Zhang PETSC_STATIC_INLINE PetscErrorCode PetscSFBcastBegin(PetscSF sf,MPI_Datatype unit,const void* rootdata,void* leafdata) {
151e2652d4cSJunchao Zhang   return PetscSFBcastAndOpBegin(sf,unit,rootdata,leafdata,MPIU_REPLACE);
152e2652d4cSJunchao Zhang }
153e2652d4cSJunchao Zhang PETSC_STATIC_INLINE PetscErrorCode PetscSFBcastEnd(PetscSF sf,MPI_Datatype unit,const void* rootdata,void* leafdata) {
154e2652d4cSJunchao Zhang   return PetscSFBcastAndOpEnd(sf,unit,rootdata,leafdata,MPIU_REPLACE);
155e2652d4cSJunchao Zhang }
156e2652d4cSJunchao Zhang 
157936c5a86SJed Brown #endif
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