1936c5a86SJed Brown /* 2936c5a86SJed Brown A star forest (SF) describes a communication pattern 3936c5a86SJed Brown */ 426bd1501SBarry Smith #if !defined(PETSCSF_H) 526bd1501SBarry Smith #define PETSCSF_H 62c8e378dSBarry Smith #include <petscsys.h> 7*dd5b3ca6SJunchao Zhang #include <petscis.h> 80c312b8eSJed Brown #include <petscsftypes.h> 9936c5a86SJed Brown 10014dd563SJed Brown PETSC_EXTERN PetscClassId PETSCSF_CLASSID; 11936c5a86SJed Brown 125af141bcSJed Brown /*J 13*dd5b3ca6SJunchao Zhang PetscSFType - String with the name of a PetscSF type 145af141bcSJed Brown 155af141bcSJed Brown Level: beginner 165af141bcSJed Brown 175af141bcSJed Brown .seealso: PetscSFSetType(), PetscSF 185af141bcSJed Brown J*/ 195af141bcSJed Brown typedef const char *PetscSFType; 20ac762476SJed Brown #define PETSCSFBASIC "basic" 21*dd5b3ca6SJunchao Zhang #define PETSCSFALLGATHERV "allgatherv" 22*dd5b3ca6SJunchao Zhang #define PETSCSFALLGATHER "allgather" 23*dd5b3ca6SJunchao Zhang #define PETSCSFGATHERV "gatherv" 24*dd5b3ca6SJunchao Zhang #define PETSCSFGATHER "gather" 25*dd5b3ca6SJunchao Zhang #define PETSCSFALLTOALL "alltoall" 26ed658588SBarry Smith #define PETSCSFWINDOW "window" 275af141bcSJed Brown 28936c5a86SJed Brown /*E 29*dd5b3ca6SJunchao Zhang PetscSFPattern - Pattern of the PetscSF graph 30*dd5b3ca6SJunchao Zhang 31*dd5b3ca6SJunchao Zhang $ PETSCSF_PATTERN_GENERAL - A general graph. One sets the graph with PetscSFSetGraph() and usually does not use this enum directly. 32*dd5b3ca6SJunchao Zhang $ PETSCSF_PATTERN_ALLGATHER - A graph that every rank gathers all roots from all ranks (like MPI_Allgather/v). One sets the graph with PetscSFSetGraphWithPattern(). 33*dd5b3ca6SJunchao Zhang $ PETSCSF_PATTERN_GATHER - A graph that rank 0 gathers all roots from all ranks (like MPI_Gather/v with root=0). One sets the graph with PetscSFSetGraphWithPattern(). 34*dd5b3ca6SJunchao Zhang $ PETSCSF_PATTERN_ALLTOALL - A graph that every rank gathers different roots from all ranks (like MPI_Alltoall). One sets the graph with PetscSFSetGraphWithPattern(). 35*dd5b3ca6SJunchao Zhang In an ALLTOALL graph, we assume each process has <size> leaves and <size> roots, with each leaf connecting to a remote root. Here <size> is 36*dd5b3ca6SJunchao Zhang the size of the communicator. This does not mean one can not communicate multiple data items between a pair of processes. One just needs to 37*dd5b3ca6SJunchao Zhang create a new MPI datatype for the multiple data items, e.g., by MPI_Type_contiguous. 38*dd5b3ca6SJunchao Zhang Level: beginner 39*dd5b3ca6SJunchao Zhang 40*dd5b3ca6SJunchao Zhang .seealso: PetscSFSetGraph(), PetscSFSetGraphWithPattern() 41*dd5b3ca6SJunchao Zhang E*/ 42*dd5b3ca6SJunchao Zhang typedef enum {PETSCSF_PATTERN_GENERAL=0,PETSCSF_PATTERN_ALLGATHER,PETSCSF_PATTERN_GATHER,PETSCSF_PATTERN_ALLTOALL} PetscSFPattern; 43*dd5b3ca6SJunchao Zhang 44*dd5b3ca6SJunchao Zhang /*E 455af141bcSJed Brown PetscSFWindowSyncType - Type of synchronization for PETSCSFWINDOW 46936c5a86SJed Brown 475af141bcSJed Brown $ PETSCSF_WINDOW_SYNC_FENCE - simplest model, synchronizing across communicator 485af141bcSJed Brown $ PETSCSF_WINDOW_SYNC_LOCK - passive model, less synchronous, requires less setup than PETSCSF_WINDOW_SYNC_ACTIVE, but may require more handshakes 495af141bcSJed Brown $ PETSCSF_WINDOW_SYNC_ACTIVE - active model, provides most information to MPI implementation, needs to construct 2-way process groups (more setup than PETSCSF_WINDOW_SYNC_LOCK) 50936c5a86SJed Brown 51e84a5f06SJed Brown Level: advanced 52936c5a86SJed Brown 53e84a5f06SJed Brown .seealso: PetscSFWindowSetSyncType(), PetscSFWindowGetSyncType() 54936c5a86SJed Brown E*/ 555af141bcSJed Brown typedef enum {PETSCSF_WINDOW_SYNC_FENCE,PETSCSF_WINDOW_SYNC_LOCK,PETSCSF_WINDOW_SYNC_ACTIVE} PetscSFWindowSyncType; 565af141bcSJed Brown PETSC_EXTERN const char *const PetscSFWindowSyncTypes[]; 57936c5a86SJed Brown 58e84a5f06SJed Brown /*E 59e84a5f06SJed Brown PetscSFDuplicateOption - Aspects to preserve when duplicating a PetscSF 60e84a5f06SJed Brown 61e84a5f06SJed Brown $ PETSCSF_DUPLICATE_CONFONLY - configuration only, user must call PetscSFSetGraph() 62e84a5f06SJed Brown $ PETSCSF_DUPLICATE_RANKS - communication ranks preserved, but different graph (allows simpler setup after calling PetscSFSetGraph()) 63e84a5f06SJed Brown $ PETSCSF_DUPLICATE_GRAPH - entire graph duplicated 64e84a5f06SJed Brown 65e84a5f06SJed Brown Level: beginner 66e84a5f06SJed Brown 67e84a5f06SJed Brown .seealso: PetscSFDuplicate() 68e84a5f06SJed Brown E*/ 69e84a5f06SJed Brown typedef enum {PETSCSF_DUPLICATE_CONFONLY,PETSCSF_DUPLICATE_RANKS,PETSCSF_DUPLICATE_GRAPH} PetscSFDuplicateOption; 70e84a5f06SJed Brown PETSC_EXTERN const char *const PetscSFDuplicateOptions[]; 71090c6444SJed Brown 72adc40e5bSBarry Smith PETSC_EXTERN PetscFunctionList PetscSFList; 73bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFRegister(const char[],PetscErrorCode (*)(PetscSF)); 745af141bcSJed Brown 75607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFInitializePackage(void); 76014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFFinalizePackage(void); 7779c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFCreate(MPI_Comm,PetscSF*); 78014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFDestroy(PetscSF*); 795af141bcSJed Brown PETSC_EXTERN PetscErrorCode PetscSFSetType(PetscSF,PetscSFType); 8029046d53SLisandro Dalcin PETSC_EXTERN PetscErrorCode PetscSFGetType(PetscSF,PetscSFType*); 81014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFView(PetscSF,PetscViewer); 823a93e3b7SToby Isaac PETSC_STATIC_INLINE PetscErrorCode PetscSFViewFromOptions(PetscSF A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);} 835af141bcSJed Brown PETSC_EXTERN PetscErrorCode PetscSFSetUp(PetscSF); 84014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFSetFromOptions(PetscSF); 85e84a5f06SJed Brown PETSC_EXTERN PetscErrorCode PetscSFDuplicate(PetscSF,PetscSFDuplicateOption,PetscSF*); 865af141bcSJed Brown PETSC_EXTERN PetscErrorCode PetscSFWindowSetSyncType(PetscSF,PetscSFWindowSyncType); 875af141bcSJed Brown PETSC_EXTERN PetscErrorCode PetscSFWindowGetSyncType(PetscSF,PetscSFWindowSyncType*); 88014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFSetRankOrder(PetscSF,PetscBool); 8963f4a732SJed Brown PETSC_EXTERN PetscErrorCode PetscSFSetGraph(PetscSF,PetscInt,PetscInt,const PetscInt*,PetscCopyMode,const PetscSFNode*,PetscCopyMode); 90*dd5b3ca6SJunchao Zhang PETSC_EXTERN PetscErrorCode PetscSFSetGraphWithPattern(PetscSF,PetscLayout,PetscSFPattern); 9179c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFGetGraph(PetscSF,PetscInt*,PetscInt*,const PetscInt**,const PetscSFNode**); 92f723732fSJed Brown PETSC_EXTERN PetscErrorCode PetscSFGetLeafRange(PetscSF,PetscInt*,PetscInt*); 9379c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFCreateEmbeddedSF(PetscSF,PetscInt,const PetscInt*,PetscSF*); 942f5fb4c2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSFCreateEmbeddedLeafSF(PetscSF,PetscInt,const PetscInt *, PetscSF *); 95014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFReset(PetscSF); 96b5a8e515SJed Brown PETSC_EXTERN PetscErrorCode PetscSFSetUpRanks(PetscSF,MPI_Group); 97dec1416fSJunchao Zhang PETSC_EXTERN PetscErrorCode PetscSFGetRootRanks(PetscSF,PetscInt*,const PetscMPIInt**,const PetscInt**,const PetscInt**,const PetscInt**); 988750ddebSJunchao Zhang PETSC_EXTERN PetscErrorCode PetscSFGetLeafRanks(PetscSF,PetscInt*,const PetscMPIInt**,const PetscInt**,const PetscInt**); 99014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFGetGroups(PetscSF,MPI_Group*,MPI_Group*); 100014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFGetMultiSF(PetscSF,PetscSF*); 101014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSFCreateInverseSF(PetscSF,PetscSF*); 102936c5a86SJed Brown 1033482bfa8SJunchao Zhang /* Reduce rootdata to leafdata using provided operation */ 1043482bfa8SJunchao Zhang PETSC_EXTERN PetscErrorCode PetscSFBcastAndOpBegin(PetscSF,MPI_Datatype,const void*,void*,MPI_Op) 1053482bfa8SJunchao Zhang PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2); 1063482bfa8SJunchao Zhang PETSC_EXTERN PetscErrorCode PetscSFBcastAndOpEnd(PetscSF,MPI_Datatype,const void*,void*,MPI_Op) 1073482bfa8SJunchao Zhang PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2); 108936c5a86SJed Brown /* Reduce leafdata into rootdata using provided operation */ 10979c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFReduceBegin(PetscSF,MPI_Datatype,const void*,void *,MPI_Op) 11019436ca2SJed Brown PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2); 11179c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFReduceEnd(PetscSF,MPI_Datatype,const void*,void*,MPI_Op) 11219436ca2SJed Brown PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2); 113936c5a86SJed Brown /* Atomically modifies (using provided operation) rootdata using leafdata from each leaf, value at root at time of modification is returned in leafupdate. */ 11479c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFFetchAndOpBegin(PetscSF,MPI_Datatype,void*,const void*,void*,MPI_Op) 115894dd566SJed Brown PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2) PetscAttrMPIPointerWithType(5,2); 11679c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFFetchAndOpEnd(PetscSF,MPI_Datatype,void*,const void*,void*,MPI_Op) 117894dd566SJed Brown PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2) PetscAttrMPIPointerWithType(5,2); 118936c5a86SJed Brown /* Compute the degree of every root vertex (number of leaves in its star) */ 11979c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFComputeDegreeBegin(PetscSF,const PetscInt**); 12079c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFComputeDegreeEnd(PetscSF,const PetscInt**); 12166dfcd1aSVaclav Hapla PETSC_EXTERN PetscErrorCode PetscSFComputeMultiRootOriginalNumbering(PetscSF,const PetscInt[],PetscInt*,PetscInt*[]); 122936c5a86SJed Brown /* Concatenate data from all leaves into roots */ 12379c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFGatherBegin(PetscSF,MPI_Datatype,const void*,void*) 124894dd566SJed Brown PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2); 12579c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFGatherEnd(PetscSF,MPI_Datatype,const void*,void*) 126894dd566SJed Brown PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2); 127936c5a86SJed Brown /* Distribute distinct values to each leaf from roots */ 12879c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFScatterBegin(PetscSF,MPI_Datatype,const void*,void*) 129894dd566SJed Brown PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2); 13079c40355SBarry Smith PETSC_EXTERN PetscErrorCode PetscSFScatterEnd(PetscSF,MPI_Datatype,const void*,void*) 131894dd566SJed Brown PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2); 132936c5a86SJed Brown 133a7b3aa13SAta Mesgarnejad PETSC_EXTERN PetscErrorCode PetscSFCompose(PetscSF,PetscSF,PetscSF*); 134a7b3aa13SAta Mesgarnejad 1358bfbc91cSJed Brown #if defined(MPI_REPLACE) 1368bfbc91cSJed Brown # define MPIU_REPLACE MPI_REPLACE 1378bfbc91cSJed Brown #else 1388bfbc91cSJed Brown /* When using an old MPI such that MPI_REPLACE is not defined, we do not pass MPI_REPLACE to MPI at all. Instead, we 1398bfbc91cSJed Brown * use it as a flag for our own reducer in the PETSCSFBASIC implementation. This could be any unique value unlikely to 1408bfbc91cSJed Brown * collide with another MPI_Op so we'll just use the value that has been used by every version of MPICH since 1418bfbc91cSJed Brown * MPICH2-1.0.6. */ 1428bfbc91cSJed Brown # define MPIU_REPLACE (MPI_Op)(0x5800000d) 1438bfbc91cSJed Brown #endif 1448bfbc91cSJed Brown 145dec1416fSJunchao Zhang PETSC_DEPRECATED_FUNCTION("Use PetscSFGetRootRanks (since v3.12)") 146dec1416fSJunchao Zhang PETSC_STATIC_INLINE PetscErrorCode PetscSFGetRanks(PetscSF sf,PetscInt *nranks,const PetscMPIInt **ranks,const PetscInt **roffset,const PetscInt **rmine,const PetscInt **rremote) { 147dec1416fSJunchao Zhang return PetscSFGetRootRanks(sf,nranks,ranks,roffset,rmine,rremote); 148dec1416fSJunchao Zhang } 149e2652d4cSJunchao Zhang 150e2652d4cSJunchao Zhang PETSC_STATIC_INLINE PetscErrorCode PetscSFBcastBegin(PetscSF sf,MPI_Datatype unit,const void* rootdata,void* leafdata) { 151e2652d4cSJunchao Zhang return PetscSFBcastAndOpBegin(sf,unit,rootdata,leafdata,MPIU_REPLACE); 152e2652d4cSJunchao Zhang } 153e2652d4cSJunchao Zhang PETSC_STATIC_INLINE PetscErrorCode PetscSFBcastEnd(PetscSF sf,MPI_Datatype unit,const void* rootdata,void* leafdata) { 154e2652d4cSJunchao Zhang return PetscSFBcastAndOpEnd(sf,unit,rootdata,leafdata,MPIU_REPLACE); 155e2652d4cSJunchao Zhang } 156e2652d4cSJunchao Zhang 157936c5a86SJed Brown #endif 158