1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 10d382aafbSBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include 112981ebdbSBarry Smith in the conf/variables definition of PETSC_INCLUDE. For --prefix installs the ${PETSC_ARCH}/ 122981ebdbSBarry Smith does not exist and petscconf.h is in the same directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 28ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 29ea0fecefSShri Abhyankar #define _GNU_SOURCE 30ea0fecefSShri Abhyankar #endif 3173fca5a0SBarry Smith #endif 3273fca5a0SBarry Smith 33d382aafbSBarry Smith /* ========================================================================== */ 34d382aafbSBarry Smith /* 352c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 36d382aafbSBarry Smith */ 371ec50b02SJed Brown #if defined(__cplusplus) 381ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 391ec50b02SJed Brown #else 401ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 411ec50b02SJed Brown #endif 42d382aafbSBarry Smith 43ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 44014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 45014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 4621f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 47014dd563SJed Brown #elif defined(PETSC_USE_VISIBILITY) 48014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 49014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 5021f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 51d382aafbSBarry Smith #else 52014dd563SJed Brown # define PETSC_DLLEXPORT 53014dd563SJed Brown # define PETSC_DLLIMPORT 5421f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 55014dd563SJed Brown #endif 56014dd563SJed Brown 57014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 58014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 59014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 60014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 61014dd563SJed Brown #endif 62014dd563SJed Brown 632c280183SJed Brown #if defined(__cplusplus) 64014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 65638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 6621f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 67014dd563SJed Brown #else 68014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 69638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 706258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 71d382aafbSBarry Smith #endif 7227710113SBarry Smith 732c8e378dSBarry Smith #include <petscversion.h> 74301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 75d382aafbSBarry Smith 76d382aafbSBarry Smith /* ========================================================================== */ 77d382aafbSBarry Smith 78d382aafbSBarry Smith /* 79d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 80d382aafbSBarry Smith 81d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 82d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 83d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 84d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 85d382aafbSBarry Smith mpicxx.h directly in their code 86d382aafbSBarry Smith */ 87d382aafbSBarry Smith #define MPICH_SKIP_MPICXX 1 88d382aafbSBarry Smith #define OMPI_SKIP_MPICXX 1 892c8e378dSBarry Smith #include <mpi.h> 9065013866SBarry Smith 91d382aafbSBarry Smith /* 922981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 93d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 94d382aafbSBarry Smith */ 95d382aafbSBarry Smith #include <stdio.h> 96d382aafbSBarry Smith 97d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 98d382aafbSBarry Smith #if !defined(MPIAPI) 99d382aafbSBarry Smith #define MPIAPI 100d382aafbSBarry Smith #endif 101d382aafbSBarry Smith 102894dd566SJed Brown /* Support for Clang (>=3.2) matching type tag arguments with void* buffer types */ 103894dd566SJed Brown #if defined(__has_attribute) 104894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 105894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1068ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1078ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 108894dd566SJed Brown # endif 109894dd566SJed Brown #endif 110894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 111894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1128ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1138ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 114894dd566SJed Brown #endif 115b3506946SBarry Smith 116d382aafbSBarry Smith /*MC 117d382aafbSBarry Smith PetscErrorCode - datatype used for return error code from all PETSc functions 118d382aafbSBarry Smith 119d382aafbSBarry Smith Level: beginner 120d382aafbSBarry Smith 121d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 122d382aafbSBarry Smith M*/ 123d382aafbSBarry Smith typedef int PetscErrorCode; 124d382aafbSBarry Smith 125d382aafbSBarry Smith /*MC 126d382aafbSBarry Smith 127503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 128d382aafbSBarry Smith (internal integer in the data structure used for error 1292981ebdbSBarry Smith checking). These are all computed by an offset from the lowest 1300700a824SBarry Smith one, PETSC_SMALLEST_CLASSID. 131d382aafbSBarry Smith 132d382aafbSBarry Smith Level: advanced 133d382aafbSBarry Smith 1340700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 135d382aafbSBarry Smith M*/ 1360700a824SBarry Smith typedef int PetscClassId; 137d382aafbSBarry Smith 138d382aafbSBarry Smith 139d382aafbSBarry Smith /*MC 140d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 141d382aafbSBarry Smith 142d382aafbSBarry Smith Level: intermediate 143d382aafbSBarry Smith 144d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 1453b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 146d382aafbSBarry Smith 1474dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 1482981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 149d382aafbSBarry Smith 150d382aafbSBarry Smith .seealso: PetscBLASInt, PetscInt 151d382aafbSBarry Smith 152d382aafbSBarry Smith M*/ 153d382aafbSBarry Smith typedef int PetscMPIInt; 154d382aafbSBarry Smith 155d382aafbSBarry Smith /*MC 156d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 157d382aafbSBarry Smith 158d382aafbSBarry Smith Level: intermediate 159d382aafbSBarry Smith 160d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 161d382aafbSBarry Smith M*/ 162d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 1635a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 164d382aafbSBarry Smith 165d382aafbSBarry Smith /*MC 166d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 1673b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 168d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 169d382aafbSBarry Smith 170d382aafbSBarry Smith Level: intermediate 171d382aafbSBarry Smith 172d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 173d382aafbSBarry Smith M*/ 174f505b413SSatish Balay #if (PETSC_SIZEOF_LONG_LONG == 8) 175f505b413SSatish Balay typedef long long Petsc64bitInt; 176f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 177236ed0a3SSatish Balay typedef __int64 Petsc64bitInt; 178236ed0a3SSatish Balay #else 179f505b413SSatish Balay typedef unknown64bit Petsc64bitInt 180236ed0a3SSatish Balay #endif 181d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 182236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt; 183d382aafbSBarry Smith #define MPIU_INT MPI_LONG_LONG_INT 184d382aafbSBarry Smith #else 185d382aafbSBarry Smith typedef int PetscInt; 186d382aafbSBarry Smith #define MPIU_INT MPI_INT 187d382aafbSBarry Smith #endif 188236ed0a3SSatish Balay 189d382aafbSBarry Smith 190702bc34aSSatish Balay /*MC 191702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 192702bc34aSSatish Balay 193702bc34aSSatish Balay Level: intermediate 194702bc34aSSatish Balay 195702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 196702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 197702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 198702bc34aSSatish Balay 199c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 2002981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 201702bc34aSSatish Balay 2022981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 203702bc34aSSatish Balay if you run ./configure with the option 204702bc34aSSatish Balay --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 2052981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 2062981ebdbSBarry Smith 2072981ebdbSBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with --known-64-bit-blas-indices 2082981ebdbSBarry Smith 2092981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 210702bc34aSSatish Balay 211702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 212702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 213702bc34aSSatish Balay 214702bc34aSSatish Balay .seealso: PetscMPIInt, PetscInt 215702bc34aSSatish Balay 216702bc34aSSatish Balay M*/ 217702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 218702bc34aSSatish Balay typedef Petsc64bitInt PetscBLASInt; 219702bc34aSSatish Balay #else 220702bc34aSSatish Balay typedef int PetscBLASInt; 221702bc34aSSatish Balay #endif 222702bc34aSSatish Balay 22358b60935SBarry Smith /*EC 22458b60935SBarry Smith 2252981ebdbSBarry Smith PetscPrecision - indicates what precision the object is using. This is currently not used. 22658b60935SBarry Smith 22758b60935SBarry Smith Level: advanced 22858b60935SBarry Smith 22958b60935SBarry Smith .seealso: PetscObjectSetPrecision() 23058b60935SBarry Smith E*/ 23158b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 232014dd563SJed Brown PETSC_EXTERN const char *PetscPrecisions[]; 23358b60935SBarry Smith 234503cfb0cSBarry Smith /* 235503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 236503cfb0cSBarry Smith */ 237d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 238adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 239d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 240adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 241d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 242adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 243d382aafbSBarry Smith #else 244d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 245d382aafbSBarry Smith #endif 246d382aafbSBarry Smith 247d382aafbSBarry Smith 248d382aafbSBarry Smith /* 249d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 250d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 251d382aafbSBarry Smith */ 252014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 253d382aafbSBarry Smith 254d382aafbSBarry Smith /* 255d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 256d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 257d382aafbSBarry Smith */ 258014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 259d382aafbSBarry Smith 260d382aafbSBarry Smith /*MC 261d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 262d382aafbSBarry Smith 263d382aafbSBarry Smith Synopsis: 264f2ba6396SBarry Smith #include "petscsys.h" 265ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 266d382aafbSBarry Smith 267eca87e8dSBarry Smith Not Collective 268eca87e8dSBarry Smith 269d382aafbSBarry Smith Input Parameters: 270d382aafbSBarry Smith . cond - condition or expression 271d382aafbSBarry Smith 272d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 273d382aafbSBarry Smith branch is unlikely. 274d382aafbSBarry Smith 275d382aafbSBarry Smith Level: advanced 276d382aafbSBarry Smith 277d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 278d382aafbSBarry Smith M*/ 279d382aafbSBarry Smith 280d382aafbSBarry Smith /*MC 281d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 282d382aafbSBarry Smith 283d382aafbSBarry Smith Synopsis: 284f2ba6396SBarry Smith #include "petscsys.h" 285ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 286d382aafbSBarry Smith 287eca87e8dSBarry Smith Not Collective 288eca87e8dSBarry Smith 289d382aafbSBarry Smith Input Parameters: 290d382aafbSBarry Smith . cond - condition or expression 291d382aafbSBarry Smith 292d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 293d382aafbSBarry Smith branch is likely. 294d382aafbSBarry Smith 295d382aafbSBarry Smith Level: advanced 296d382aafbSBarry Smith 297d382aafbSBarry Smith .seealso: PetscUnlikely() 298d382aafbSBarry Smith M*/ 299d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 300d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 301d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 302d382aafbSBarry Smith #else 303cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 304cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 305d382aafbSBarry Smith #endif 306d382aafbSBarry Smith 307d382aafbSBarry Smith /* 308d382aafbSBarry Smith Defines some elementary mathematics functions and constants. 309d382aafbSBarry Smith */ 3102c8e378dSBarry Smith #include <petscmath.h> 311d382aafbSBarry Smith 312d382aafbSBarry Smith /* 313d382aafbSBarry Smith Declare extern C stuff after including external header files 314d382aafbSBarry Smith */ 315d382aafbSBarry Smith 316d382aafbSBarry Smith 317d382aafbSBarry Smith /* 318d382aafbSBarry Smith Basic PETSc constants 319d382aafbSBarry Smith */ 320d382aafbSBarry Smith 321d382aafbSBarry Smith /*E 322ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 323d382aafbSBarry Smith 324d382aafbSBarry Smith Level: beginner 325d382aafbSBarry Smith 326ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 32734e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 32834e82e7dSBarry Smith 329d382aafbSBarry Smith E*/ 330ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 3316a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 3325a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 33370b3c8c7SBarry Smith 33470b3c8c7SBarry Smith /*E 33570b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 33670b3c8c7SBarry Smith 33770b3c8c7SBarry Smith Level: beginner 33870b3c8c7SBarry Smith 33970b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 34070b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 34170b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 34270b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 34370b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 34470b3c8c7SBarry Smith 34570b3c8c7SBarry Smith E*/ 34670b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 3476a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 348d382aafbSBarry Smith 349d382aafbSBarry Smith /*MC 350ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 351d382aafbSBarry Smith 352d382aafbSBarry Smith Level: beginner 353d382aafbSBarry Smith 354d382aafbSBarry Smith Note: Zero integer 355d382aafbSBarry Smith 356ace3abfcSBarry Smith .seealso: PetscBool , PETSC_TRUE 357d382aafbSBarry Smith M*/ 358d382aafbSBarry Smith 359d382aafbSBarry Smith /*MC 360ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 361d382aafbSBarry Smith 362d382aafbSBarry Smith Level: beginner 363d382aafbSBarry Smith 364d382aafbSBarry Smith Note: Nonzero integer 365d382aafbSBarry Smith 366ace3abfcSBarry Smith .seealso: PetscBool , PETSC_FALSE 367d382aafbSBarry Smith M*/ 368d382aafbSBarry Smith 369d382aafbSBarry Smith /*MC 3700298fd71SBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer. This is deprecated in C/C++ simply use NULL 371d382aafbSBarry Smith 372d382aafbSBarry Smith Level: beginner 373d382aafbSBarry Smith 374d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 375d382aafbSBarry Smith some default 376d382aafbSBarry Smith 377d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 378503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 379d382aafbSBarry Smith 380d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 381d382aafbSBarry Smith 382d382aafbSBarry Smith M*/ 3833bcbec90SJed Brown #define PETSC_NULL NULL 384d382aafbSBarry Smith 385d382aafbSBarry Smith /*MC 3860298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 387d382aafbSBarry Smith 388d382aafbSBarry Smith Level: beginner 389d382aafbSBarry Smith 390d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 391d382aafbSBarry Smith some default 392d382aafbSBarry Smith 393d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 394d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 395d382aafbSBarry Smith 396d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 397d382aafbSBarry Smith 398d382aafbSBarry Smith M*/ 3990298fd71SBarry Smith #define PETSC_IGNORE NULL 400d382aafbSBarry Smith 401d382aafbSBarry Smith /*MC 402557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 403557d4da8SBarry Smith where you wish PETSc to use the default. 404557d4da8SBarry Smith 405557d4da8SBarry Smith Level: beginner 406557d4da8SBarry Smith 407557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 408557d4da8SBarry Smith 409557d4da8SBarry Smith M*/ 410557d4da8SBarry Smith #define PETSC_DECIDE -1 411557d4da8SBarry Smith 412557d4da8SBarry Smith /*MC 413d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 414d382aafbSBarry Smith where you wish PETSc to compute the required value. 415d382aafbSBarry Smith 416d382aafbSBarry Smith Level: beginner 417d382aafbSBarry Smith 418557d4da8SBarry Smith 419557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 420557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 421557d4da8SBarry Smith 4220298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 423d382aafbSBarry Smith 424d382aafbSBarry Smith M*/ 425d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 426d382aafbSBarry Smith 427d382aafbSBarry Smith /*MC 428557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 429557d4da8SBarry Smith where you wish PETSc to use the default. 430557d4da8SBarry Smith 431557d4da8SBarry Smith Level: beginner 432557d4da8SBarry Smith 433557d4da8SBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_DOUBLE_PRECISION. 434557d4da8SBarry Smith 4350298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 436557d4da8SBarry Smith 437557d4da8SBarry Smith M*/ 438557d4da8SBarry Smith #define PETSC_DEFAULT -2 439557d4da8SBarry Smith 440557d4da8SBarry Smith /*MC 441d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 442d382aafbSBarry Smith all the processs that PETSc knows about. 443d382aafbSBarry Smith 444d382aafbSBarry Smith Level: beginner 445d382aafbSBarry Smith 446d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 447d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 448d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 449d382aafbSBarry Smith PetscInitialize() 450d382aafbSBarry Smith 451d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 452d382aafbSBarry Smith 453d382aafbSBarry Smith M*/ 454014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 455d382aafbSBarry Smith 456d382aafbSBarry Smith /*MC 457503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 458d382aafbSBarry Smith 459d382aafbSBarry Smith Level: beginner 460d382aafbSBarry Smith 461d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 462d382aafbSBarry Smith 463d382aafbSBarry Smith M*/ 464d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 465d382aafbSBarry Smith 466d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 467014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 468014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 469014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 470d382aafbSBarry Smith 471014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 472014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 473014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 474d382aafbSBarry Smith 475d382aafbSBarry Smith /*MC 476d382aafbSBarry Smith PetscMalloc - Allocates memory 477d382aafbSBarry Smith 478eca87e8dSBarry Smith Synopsis: 479f2ba6396SBarry Smith #include "petscsys.h" 480eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 481eca87e8dSBarry Smith 482eca87e8dSBarry Smith Not Collective 483eca87e8dSBarry Smith 484d382aafbSBarry Smith Input Parameter: 485d382aafbSBarry Smith . m - number of bytes to allocate 486d382aafbSBarry Smith 487d382aafbSBarry Smith Output Parameter: 488d382aafbSBarry Smith . result - memory allocated 489d382aafbSBarry Smith 490d382aafbSBarry Smith Level: beginner 491d382aafbSBarry Smith 492d382aafbSBarry Smith Notes: Memory is always allocated at least double aligned 493d382aafbSBarry Smith 494d382aafbSBarry Smith If you request memory of zero size it will allocate no space and assign the pointer to 0; PetscFree() will 495d382aafbSBarry Smith properly handle not freeing the null pointer. 496d382aafbSBarry Smith 497d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 498d382aafbSBarry Smith 499d382aafbSBarry Smith Concepts: memory allocation 500d382aafbSBarry Smith 501d382aafbSBarry Smith M*/ 5022714b66aSJed Brown #define PetscMalloc(a,b) ((a != 0) ? (*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__,(void**)(b)) : (*(b) = 0,0) ) 503d382aafbSBarry Smith 504d382aafbSBarry Smith /*MC 505503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 506d382aafbSBarry Smith 507d382aafbSBarry Smith Synopsis: 508f2ba6396SBarry Smith #include "petscsys.h" 509d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 510d382aafbSBarry Smith 511eca87e8dSBarry Smith Not Collective 512eca87e8dSBarry Smith 513eca87e8dSBarry Smith Input Parameters: 514eca87e8dSBarry Smith . addr - address to align (any pointer type) 515eca87e8dSBarry Smith 516d382aafbSBarry Smith Level: developer 517d382aafbSBarry Smith 518d382aafbSBarry Smith .seealso: PetscMallocAlign() 519d382aafbSBarry Smith 520d382aafbSBarry Smith Concepts: memory allocation 521d382aafbSBarry Smith M*/ 522d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 523d382aafbSBarry Smith 524d382aafbSBarry Smith /*MC 525503cfb0cSBarry Smith PetscMalloc2 - Allocates 2 chunks of memory both aligned to PETSC_MEMALIGN 526d382aafbSBarry Smith 527eca87e8dSBarry Smith Synopsis: 528f2ba6396SBarry Smith #include "petscsys.h" 529eca87e8dSBarry Smith PetscErrorCode PetscMalloc2(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2) 530eca87e8dSBarry Smith 531eca87e8dSBarry Smith Not Collective 532eca87e8dSBarry Smith 533d382aafbSBarry Smith Input Parameter: 534d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 535d382aafbSBarry Smith . t1 - type of first memory elements 536d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 537d382aafbSBarry Smith - t2 - type of second memory elements 538d382aafbSBarry Smith 539d382aafbSBarry Smith Output Parameter: 540d382aafbSBarry Smith + r1 - memory allocated in first chunk 541d382aafbSBarry Smith - r2 - memory allocated in second chunk 542d382aafbSBarry Smith 543d382aafbSBarry Smith Level: developer 544d382aafbSBarry Smith 545d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 546d382aafbSBarry Smith 547d382aafbSBarry Smith Concepts: memory allocation 548d382aafbSBarry Smith 549d382aafbSBarry Smith M*/ 550d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 551d382aafbSBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2)) 552d382aafbSBarry Smith #else 5532981ebdbSBarry Smith #define PetscMalloc2(m1,t1,r1,m2,t2,r2) ((*(r2) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(PETSC_MEMALIGN-1),r1)) || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),0)) 554d382aafbSBarry Smith #endif 555d382aafbSBarry Smith 556d382aafbSBarry Smith /*MC 557503cfb0cSBarry Smith PetscMalloc3 - Allocates 3 chunks of memory all aligned to PETSC_MEMALIGN 558d382aafbSBarry Smith 559eca87e8dSBarry Smith Synopsis: 560f2ba6396SBarry Smith #include "petscsys.h" 561eca87e8dSBarry Smith PetscErrorCode PetscMalloc3(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3) 562eca87e8dSBarry Smith 563eca87e8dSBarry Smith Not Collective 564eca87e8dSBarry Smith 565d382aafbSBarry Smith Input Parameter: 566d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 567d382aafbSBarry Smith . t1 - type of first memory elements 568d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 569d382aafbSBarry Smith . t2 - type of second memory elements 570d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 571d382aafbSBarry Smith - t3 - type of third memory elements 572d382aafbSBarry Smith 573d382aafbSBarry Smith Output Parameter: 574d382aafbSBarry Smith + r1 - memory allocated in first chunk 575d382aafbSBarry Smith . r2 - memory allocated in second chunk 576d382aafbSBarry Smith - r3 - memory allocated in third chunk 577d382aafbSBarry Smith 578d382aafbSBarry Smith Level: developer 579d382aafbSBarry Smith 580d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3() 581d382aafbSBarry Smith 582d382aafbSBarry Smith Concepts: memory allocation 583d382aafbSBarry Smith 584d382aafbSBarry Smith M*/ 585d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 586d382aafbSBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3)) 587d382aafbSBarry Smith #else 5883b98c0a2SBarry Smith #define PetscMalloc3(m1,t1,r1,m2,t2,r2,m3,t3,r3) ((*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+2*(PETSC_MEMALIGN-1),r1)) \ 589d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),0)) 590d382aafbSBarry Smith #endif 591d382aafbSBarry Smith 592d382aafbSBarry Smith /*MC 593503cfb0cSBarry Smith PetscMalloc4 - Allocates 4 chunks of memory all aligned to PETSC_MEMALIGN 594d382aafbSBarry Smith 595eca87e8dSBarry Smith Synopsis: 596f2ba6396SBarry Smith #include "petscsys.h" 597eca87e8dSBarry Smith PetscErrorCode PetscMalloc4(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4) 598eca87e8dSBarry Smith 599eca87e8dSBarry Smith Not Collective 600eca87e8dSBarry Smith 601d382aafbSBarry Smith Input Parameter: 602d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 603d382aafbSBarry Smith . t1 - type of first memory elements 604d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 605d382aafbSBarry Smith . t2 - type of second memory elements 606d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 607d382aafbSBarry Smith . t3 - type of third memory elements 608d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 609d382aafbSBarry Smith - t4 - type of fourth memory elements 610d382aafbSBarry Smith 611d382aafbSBarry Smith Output Parameter: 612d382aafbSBarry Smith + r1 - memory allocated in first chunk 613d382aafbSBarry Smith . r2 - memory allocated in second chunk 614d382aafbSBarry Smith . r3 - memory allocated in third chunk 615d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 616d382aafbSBarry Smith 617d382aafbSBarry Smith Level: developer 618d382aafbSBarry Smith 619d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4() 620d382aafbSBarry Smith 621d382aafbSBarry Smith Concepts: memory allocation 622d382aafbSBarry Smith 623d382aafbSBarry Smith M*/ 624d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 625d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4)) 626d382aafbSBarry Smith #else 627d382aafbSBarry Smith #define PetscMalloc4(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4) \ 6283b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+3*(PETSC_MEMALIGN-1),r1)) \ 629d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),0)) 630d382aafbSBarry Smith #endif 631d382aafbSBarry Smith 632d382aafbSBarry Smith /*MC 633503cfb0cSBarry Smith PetscMalloc5 - Allocates 5 chunks of memory all aligned to PETSC_MEMALIGN 634d382aafbSBarry Smith 635eca87e8dSBarry Smith Synopsis: 636f2ba6396SBarry Smith #include "petscsys.h" 637eca87e8dSBarry Smith PetscErrorCode PetscMalloc5(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5) 638eca87e8dSBarry Smith 639eca87e8dSBarry Smith Not Collective 640eca87e8dSBarry Smith 641d382aafbSBarry Smith Input Parameter: 642d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 643d382aafbSBarry Smith . t1 - type of first memory elements 644d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 645d382aafbSBarry Smith . t2 - type of second memory elements 646d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 647d382aafbSBarry Smith . t3 - type of third memory elements 648d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 649d382aafbSBarry Smith . t4 - type of fourth memory elements 650d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 651d382aafbSBarry Smith - t5 - type of fifth memory elements 652d382aafbSBarry Smith 653d382aafbSBarry Smith Output Parameter: 654d382aafbSBarry Smith + r1 - memory allocated in first chunk 655d382aafbSBarry Smith . r2 - memory allocated in second chunk 656d382aafbSBarry Smith . r3 - memory allocated in third chunk 657d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 658d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 659d382aafbSBarry Smith 660d382aafbSBarry Smith Level: developer 661d382aafbSBarry Smith 662d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5() 663d382aafbSBarry Smith 664d382aafbSBarry Smith Concepts: memory allocation 665d382aafbSBarry Smith 666d382aafbSBarry Smith M*/ 667d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 668d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5)) 669d382aafbSBarry Smith #else 670d382aafbSBarry Smith #define PetscMalloc5(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5) \ 6713b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+4*(PETSC_MEMALIGN-1),r1)) \ 672d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),0)) 673d382aafbSBarry Smith #endif 674d382aafbSBarry Smith 675d382aafbSBarry Smith 676d382aafbSBarry Smith /*MC 677503cfb0cSBarry Smith PetscMalloc6 - Allocates 6 chunks of memory all aligned to PETSC_MEMALIGN 678d382aafbSBarry Smith 679eca87e8dSBarry Smith Synopsis: 680f2ba6396SBarry Smith #include "petscsys.h" 681eca87e8dSBarry Smith PetscErrorCode PetscMalloc6(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6) 682eca87e8dSBarry Smith 683eca87e8dSBarry Smith Not Collective 684eca87e8dSBarry Smith 685d382aafbSBarry Smith Input Parameter: 686d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 687d382aafbSBarry Smith . t1 - type of first memory elements 688d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 689d382aafbSBarry Smith . t2 - type of second memory elements 690d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 691d382aafbSBarry Smith . t3 - type of third memory elements 692d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 693d382aafbSBarry Smith . t4 - type of fourth memory elements 694d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 695d382aafbSBarry Smith . t5 - type of fifth memory elements 696d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 697d382aafbSBarry Smith - t6 - type of sixth memory elements 698d382aafbSBarry Smith 699d382aafbSBarry Smith Output Parameter: 700d382aafbSBarry Smith + r1 - memory allocated in first chunk 701d382aafbSBarry Smith . r2 - memory allocated in second chunk 702d382aafbSBarry Smith . r3 - memory allocated in third chunk 703d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 704d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 705d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 706d382aafbSBarry Smith 707d382aafbSBarry Smith Level: developer 708d382aafbSBarry Smith 709d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 710d382aafbSBarry Smith 711d382aafbSBarry Smith Concepts: memory allocation 712d382aafbSBarry Smith 713d382aafbSBarry Smith M*/ 714d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 715d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6)) 716d382aafbSBarry Smith #else 717d382aafbSBarry Smith #define PetscMalloc6(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6) \ 7183b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+5*(PETSC_MEMALIGN-1),r1)) \ 719d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),0)) 720d382aafbSBarry Smith #endif 721d382aafbSBarry Smith 722d382aafbSBarry Smith /*MC 723503cfb0cSBarry Smith PetscMalloc7 - Allocates 7 chunks of memory all aligned to PETSC_MEMALIGN 724d382aafbSBarry Smith 725eca87e8dSBarry Smith Synopsis: 726f2ba6396SBarry Smith #include "petscsys.h" 727eca87e8dSBarry Smith PetscErrorCode PetscMalloc7(size_t m1,type, t1,void **r1,size_t m2,type t2,void **r2,size_t m3,type t3,void **r3,size_t m4,type t4,void **r4,size_t m5,type t5,void **r5,size_t m6,type t6,void **r6,size_t m7,type t7,void **r7) 728eca87e8dSBarry Smith 729eca87e8dSBarry Smith Not Collective 730eca87e8dSBarry Smith 731d382aafbSBarry Smith Input Parameter: 732d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 733d382aafbSBarry Smith . t1 - type of first memory elements 734d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 735d382aafbSBarry Smith . t2 - type of second memory elements 736d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 737d382aafbSBarry Smith . t3 - type of third memory elements 738d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 739d382aafbSBarry Smith . t4 - type of fourth memory elements 740d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 741d382aafbSBarry Smith . t5 - type of fifth memory elements 742d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 743d382aafbSBarry Smith . t6 - type of sixth memory elements 744d382aafbSBarry Smith . m7 - number of elements to allocate in 7th chunk (may be zero) 745d382aafbSBarry Smith - t7 - type of sixth memory elements 746d382aafbSBarry Smith 747d382aafbSBarry Smith Output Parameter: 748d382aafbSBarry Smith + r1 - memory allocated in first chunk 749d382aafbSBarry Smith . r2 - memory allocated in second chunk 750d382aafbSBarry Smith . r3 - memory allocated in third chunk 751d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 752d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 753d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 754eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 755d382aafbSBarry Smith 756d382aafbSBarry Smith Level: developer 757d382aafbSBarry Smith 758d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6(), PetscFree7() 759d382aafbSBarry Smith 760d382aafbSBarry Smith Concepts: memory allocation 761d382aafbSBarry Smith 762d382aafbSBarry Smith M*/ 763d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 764d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) (PetscMalloc((m1)*sizeof(t1),r1) || PetscMalloc((m2)*sizeof(t2),r2) || PetscMalloc((m3)*sizeof(t3),r3) || PetscMalloc((m4)*sizeof(t4),r4) || PetscMalloc((m5)*sizeof(t5),r5) || PetscMalloc((m6)*sizeof(t6),r6) || PetscMalloc((m7)*sizeof(t7),r7)) 765d382aafbSBarry Smith #else 766d382aafbSBarry Smith #define PetscMalloc7(m1,t1,r1,m2,t2,r2,m3,t3,r3,m4,t4,r4,m5,t5,r5,m6,t6,r6,m7,t7,r7) \ 7673b98c0a2SBarry Smith ((*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(t1)+(m2)*sizeof(t2)+(m3)*sizeof(t3)+(m4)*sizeof(t4)+(m5)*sizeof(t5)+(m6)*sizeof(t6)+(m7)*sizeof(t7)+6*(PETSC_MEMALIGN-1),r1)) \ 768d382aafbSBarry Smith || (*(r2) = (t2*)PetscAddrAlign(*(r1)+m1),*(r3) = (t3*)PetscAddrAlign(*(r2)+m2),*(r4) = (t4*)PetscAddrAlign(*(r3)+m3),*(r5) = (t5*)PetscAddrAlign(*(r4)+m4),*(r6) = (t6*)PetscAddrAlign(*(r5)+m5),*(r7) = (t7*)PetscAddrAlign(*(r6)+m6),0)) 769d382aafbSBarry Smith #endif 770d382aafbSBarry Smith 771d382aafbSBarry Smith /*MC 772503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 773d382aafbSBarry Smith 774eca87e8dSBarry Smith Synopsis: 775f2ba6396SBarry Smith #include "petscsys.h" 776eca87e8dSBarry Smith PetscErrorCode PetscNew(struct type,((type *))result) 777eca87e8dSBarry Smith 778eca87e8dSBarry Smith Not Collective 779eca87e8dSBarry Smith 780d382aafbSBarry Smith Input Parameter: 781d382aafbSBarry Smith . type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 782d382aafbSBarry Smith 783d382aafbSBarry Smith Output Parameter: 784d382aafbSBarry Smith . result - memory allocated 785d382aafbSBarry Smith 786d382aafbSBarry Smith Level: beginner 787d382aafbSBarry Smith 788ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 789d382aafbSBarry Smith 790d382aafbSBarry Smith Concepts: memory allocation 791d382aafbSBarry Smith 792d382aafbSBarry Smith M*/ 793d382aafbSBarry Smith #define PetscNew(A,b) (PetscMalloc(sizeof(A),(b)) || PetscMemzero(*(b),sizeof(A))) 794ad0619ddSBarry Smith 795ad0619ddSBarry Smith /*MC 796ad0619ddSBarry Smith PetscNewLog - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 797ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 798ad0619ddSBarry Smith 799ad0619ddSBarry Smith Synopsis: 800f2ba6396SBarry Smith #include "petscsys.h" 801ad0619ddSBarry Smith PetscErrorCode PetscNewLog(PetscObject obj,struct type,((type *))result) 802ad0619ddSBarry Smith 803ad0619ddSBarry Smith Not Collective 804ad0619ddSBarry Smith 805ad0619ddSBarry Smith Input Parameter: 806ad0619ddSBarry Smith + obj - object memory is logged to 807ad0619ddSBarry Smith - type - structure name of space to be allocated. Memory of size sizeof(type) is allocated 808ad0619ddSBarry Smith 809ad0619ddSBarry Smith Output Parameter: 810ad0619ddSBarry Smith . result - memory allocated 811ad0619ddSBarry Smith 812ad0619ddSBarry Smith Level: developer 813ad0619ddSBarry Smith 814ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 815ad0619ddSBarry Smith 816ad0619ddSBarry Smith Concepts: memory allocation 817ad0619ddSBarry Smith 818ad0619ddSBarry Smith M*/ 819d382aafbSBarry Smith #define PetscNewLog(o,A,b) (PetscNew(A,b) || ((o) ? PetscLogObjectMemory(o,sizeof(A)) : 0)) 820d382aafbSBarry Smith 821d382aafbSBarry Smith /*MC 822d382aafbSBarry Smith PetscFree - Frees memory 823d382aafbSBarry Smith 824eca87e8dSBarry Smith Synopsis: 825f2ba6396SBarry Smith #include "petscsys.h" 826eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 827eca87e8dSBarry Smith 828eca87e8dSBarry Smith Not Collective 829eca87e8dSBarry Smith 830d382aafbSBarry Smith Input Parameter: 831d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 832d382aafbSBarry Smith 833d382aafbSBarry Smith Level: beginner 834d382aafbSBarry Smith 835d382aafbSBarry Smith Notes: Memory must have been obtained with PetscNew() or PetscMalloc() 836d382aafbSBarry Smith 837d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 838d382aafbSBarry Smith 839d382aafbSBarry Smith Concepts: memory allocation 840d382aafbSBarry Smith 841d382aafbSBarry Smith M*/ 84212537b14SJed Brown #define PetscFree(a) ((a) && ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__) || ((a) = 0,0))) 843d382aafbSBarry Smith 844d382aafbSBarry Smith /*MC 845d382aafbSBarry Smith PetscFreeVoid - Frees memory 846d382aafbSBarry Smith 847d382aafbSBarry Smith Synopsis: 848f2ba6396SBarry Smith #include "petscsys.h" 849d382aafbSBarry Smith void PetscFreeVoid(void *memory) 850d382aafbSBarry Smith 851eca87e8dSBarry Smith Not Collective 852eca87e8dSBarry Smith 853eca87e8dSBarry Smith Input Parameter: 854eca87e8dSBarry Smith . memory - memory to free 855eca87e8dSBarry Smith 856d382aafbSBarry Smith Level: beginner 857d382aafbSBarry Smith 858d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 859d382aafbSBarry Smith 860d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 861d382aafbSBarry Smith 862d382aafbSBarry Smith Concepts: memory allocation 863d382aafbSBarry Smith 864d382aafbSBarry Smith M*/ 8652714b66aSJed Brown #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,__SDIR__),(a) = 0) 866d382aafbSBarry Smith 867d382aafbSBarry Smith 868d382aafbSBarry Smith /*MC 869d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 870d382aafbSBarry Smith 871eca87e8dSBarry Smith Synopsis: 872f2ba6396SBarry Smith #include "petscsys.h" 873eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 874eca87e8dSBarry Smith 875eca87e8dSBarry Smith Not Collective 876eca87e8dSBarry Smith 877d382aafbSBarry Smith Input Parameter: 878d382aafbSBarry Smith + memory1 - memory to free 879d382aafbSBarry Smith - memory2 - 2nd memory to free 880d382aafbSBarry Smith 881d382aafbSBarry Smith Level: developer 882d382aafbSBarry Smith 883d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 884d382aafbSBarry Smith 885d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 886d382aafbSBarry Smith 887d382aafbSBarry Smith Concepts: memory allocation 888d382aafbSBarry Smith 889d382aafbSBarry Smith M*/ 890d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 891d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 892d382aafbSBarry Smith #else 89381dabb53SJed Brown #define PetscFree2(m1,m2) ((m2)=0, PetscFree(m1)) 894d382aafbSBarry Smith #endif 895d382aafbSBarry Smith 896d382aafbSBarry Smith /*MC 897d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 898d382aafbSBarry Smith 899eca87e8dSBarry Smith Synopsis: 900f2ba6396SBarry Smith #include "petscsys.h" 901eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 902eca87e8dSBarry Smith 903eca87e8dSBarry Smith Not Collective 904eca87e8dSBarry Smith 905d382aafbSBarry Smith Input Parameter: 906d382aafbSBarry Smith + memory1 - memory to free 907d382aafbSBarry Smith . memory2 - 2nd memory to free 908d382aafbSBarry Smith - memory3 - 3rd memory to free 909d382aafbSBarry Smith 910d382aafbSBarry Smith Level: developer 911d382aafbSBarry Smith 912d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 913d382aafbSBarry Smith 914d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 915d382aafbSBarry Smith 916d382aafbSBarry Smith Concepts: memory allocation 917d382aafbSBarry Smith 918d382aafbSBarry Smith M*/ 919d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 920d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 921d382aafbSBarry Smith #else 92281dabb53SJed Brown #define PetscFree3(m1,m2,m3) ((m3)=0,(m2)=0,PetscFree(m1)) 923d382aafbSBarry Smith #endif 924d382aafbSBarry Smith 925d382aafbSBarry Smith /*MC 926d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 927d382aafbSBarry Smith 928eca87e8dSBarry Smith Synopsis: 929f2ba6396SBarry Smith #include "petscsys.h" 930eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 931eca87e8dSBarry Smith 932eca87e8dSBarry Smith Not Collective 933eca87e8dSBarry Smith 934d382aafbSBarry Smith Input Parameter: 935d382aafbSBarry Smith + m1 - memory to free 936d382aafbSBarry Smith . m2 - 2nd memory to free 937d382aafbSBarry Smith . m3 - 3rd memory to free 938d382aafbSBarry Smith - m4 - 4th memory to free 939d382aafbSBarry Smith 940d382aafbSBarry Smith Level: developer 941d382aafbSBarry Smith 942d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 943d382aafbSBarry Smith 944d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 945d382aafbSBarry Smith 946d382aafbSBarry Smith Concepts: memory allocation 947d382aafbSBarry Smith 948d382aafbSBarry Smith M*/ 949d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 950d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 951d382aafbSBarry Smith #else 95281dabb53SJed Brown #define PetscFree4(m1,m2,m3,m4) ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 953d382aafbSBarry Smith #endif 954d382aafbSBarry Smith 955d382aafbSBarry Smith /*MC 956d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 957d382aafbSBarry Smith 958eca87e8dSBarry Smith Synopsis: 959f2ba6396SBarry Smith #include "petscsys.h" 960eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 961eca87e8dSBarry Smith 962eca87e8dSBarry Smith Not Collective 963eca87e8dSBarry Smith 964d382aafbSBarry Smith Input Parameter: 965d382aafbSBarry Smith + m1 - memory to free 966d382aafbSBarry Smith . m2 - 2nd memory to free 967d382aafbSBarry Smith . m3 - 3rd memory to free 968d382aafbSBarry Smith . m4 - 4th memory to free 969d382aafbSBarry Smith - m5 - 5th memory to free 970d382aafbSBarry Smith 971d382aafbSBarry Smith Level: developer 972d382aafbSBarry Smith 973d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 974d382aafbSBarry Smith 975d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 976d382aafbSBarry Smith 977d382aafbSBarry Smith Concepts: memory allocation 978d382aafbSBarry Smith 979d382aafbSBarry Smith M*/ 980d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 981d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 982d382aafbSBarry Smith #else 98381dabb53SJed Brown #define PetscFree5(m1,m2,m3,m4,m5) ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 984d382aafbSBarry Smith #endif 985d382aafbSBarry Smith 986d382aafbSBarry Smith 987d382aafbSBarry Smith /*MC 988d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 989d382aafbSBarry Smith 990eca87e8dSBarry Smith Synopsis: 991f2ba6396SBarry Smith #include "petscsys.h" 992eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 993eca87e8dSBarry Smith 994eca87e8dSBarry Smith Not Collective 995eca87e8dSBarry Smith 996d382aafbSBarry Smith Input Parameter: 997d382aafbSBarry Smith + m1 - memory to free 998d382aafbSBarry Smith . m2 - 2nd memory to free 999d382aafbSBarry Smith . m3 - 3rd memory to free 1000d382aafbSBarry Smith . m4 - 4th memory to free 1001d382aafbSBarry Smith . m5 - 5th memory to free 1002d382aafbSBarry Smith - m6 - 6th memory to free 1003d382aafbSBarry Smith 1004d382aafbSBarry Smith 1005d382aafbSBarry Smith Level: developer 1006d382aafbSBarry Smith 1007d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1008d382aafbSBarry Smith 1009d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1010d382aafbSBarry Smith 1011d382aafbSBarry Smith Concepts: memory allocation 1012d382aafbSBarry Smith 1013d382aafbSBarry Smith M*/ 1014d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1015d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1016d382aafbSBarry Smith #else 101781dabb53SJed Brown #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1018d382aafbSBarry Smith #endif 1019d382aafbSBarry Smith 1020d382aafbSBarry Smith /*MC 1021d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1022d382aafbSBarry Smith 1023eca87e8dSBarry Smith Synopsis: 1024f2ba6396SBarry Smith #include "petscsys.h" 1025eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1026eca87e8dSBarry Smith 1027eca87e8dSBarry Smith Not Collective 1028eca87e8dSBarry Smith 1029d382aafbSBarry Smith Input Parameter: 1030d382aafbSBarry Smith + m1 - memory to free 1031d382aafbSBarry Smith . m2 - 2nd memory to free 1032d382aafbSBarry Smith . m3 - 3rd memory to free 1033d382aafbSBarry Smith . m4 - 4th memory to free 1034d382aafbSBarry Smith . m5 - 5th memory to free 1035d382aafbSBarry Smith . m6 - 6th memory to free 1036d382aafbSBarry Smith - m7 - 7th memory to free 1037d382aafbSBarry Smith 1038d382aafbSBarry Smith 1039d382aafbSBarry Smith Level: developer 1040d382aafbSBarry Smith 1041d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1042d382aafbSBarry Smith 1043d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1044d382aafbSBarry Smith PetscMalloc7() 1045d382aafbSBarry Smith 1046d382aafbSBarry Smith Concepts: memory allocation 1047d382aafbSBarry Smith 1048d382aafbSBarry Smith M*/ 1049d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1050d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1051d382aafbSBarry Smith #else 105281dabb53SJed Brown #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) 1053d382aafbSBarry Smith #endif 1054d382aafbSBarry Smith 1055014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],const char[],void**); 1056014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[],const char[]); 1057014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[],const char[])); 1058014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1059d382aafbSBarry Smith 1060d382aafbSBarry Smith /* 1061a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1062a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1063a5057860SBarry Smith timing etc. 1064a5057860SBarry Smith */ 1065a5057860SBarry Smith typedef double PetscLogDouble; 1066a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1067a5057860SBarry Smith 1068a5057860SBarry Smith /* 106966d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1070d382aafbSBarry Smith */ 1071014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1072014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1073014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1074014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1075014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 1076*0acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1077014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[],const char[]); 1078014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1079574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1080014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1081d382aafbSBarry Smith 1082d382aafbSBarry Smith /*E 1083d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1084d382aafbSBarry Smith 1085d382aafbSBarry Smith Level: beginner 1086d382aafbSBarry Smith 1087d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1088d382aafbSBarry Smith 1089d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1090d382aafbSBarry Smith PetscDataTypeGetSize() 1091d382aafbSBarry Smith 1092d382aafbSBarry Smith E*/ 1093d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 10942d53ad75SBarry Smith PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12} PetscDataType; 10956a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1096d382aafbSBarry Smith 1097d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1098d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1099d382aafbSBarry Smith #else 1100ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1101d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 110259a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 110359a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1104d382aafbSBarry Smith #else 1105d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1106d382aafbSBarry Smith #endif 1107d382aafbSBarry Smith #endif 1108ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1109d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 111059a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 111159a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1112d382aafbSBarry Smith #else 1113d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1114d382aafbSBarry Smith #endif 1115d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1116d382aafbSBarry Smith 1117014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1118014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1119014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 1120d382aafbSBarry Smith 1121d382aafbSBarry Smith /* 1122d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1123d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1124d382aafbSBarry Smith functionality and/or error checking. 1125d382aafbSBarry Smith */ 1126014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1127014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1128014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1129014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1130d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1131014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1132014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1133014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1134014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1135014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1136014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1137014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1138014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1139014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1140014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1141014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 11422f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1143014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1144014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1145014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1146014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 11472c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1148014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1149014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 115047340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 11516fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 1152014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1153d382aafbSBarry Smith 1154573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1155573b0fb4SBarry Smith 1156d382aafbSBarry Smith /*S 1157d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1158d382aafbSBarry Smith 1159d382aafbSBarry Smith Level: intermediate 1160d382aafbSBarry Smith 1161d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1162d382aafbSBarry Smith S*/ 1163d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1164d382aafbSBarry Smith 1165014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1166014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1167014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1168d382aafbSBarry Smith 1169d382aafbSBarry Smith /* 1170d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1171d382aafbSBarry Smith */ 1172014dd563SJed Brown PETSC_EXTERN MPI_Op PetscMaxSum_Op; 11737c2de775SJed Brown #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 1174014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 11752414b3c7SJed Brown #else 11762414b3c7SJed Brown #define MPIU_SUM MPI_SUM 11772414b3c7SJed Brown #endif 11782414b3c7SJed Brown #if defined(PETSC_USE_REAL___FLOAT128) 1179014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1180014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1181d9822059SBarry Smith #else 1182d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1183d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1184d9822059SBarry Smith #endif 1185014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1186d382aafbSBarry Smith 1187014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1188014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1189eb3f98d2SBarry Smith 1190d382aafbSBarry Smith /*S 1191d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1192d382aafbSBarry Smith 1193d382aafbSBarry Smith Level: beginner 1194d382aafbSBarry Smith 11952981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1196d382aafbSBarry Smith 11971890ba74SBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereferenc() 1198d382aafbSBarry Smith S*/ 1199d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1200d382aafbSBarry Smith 1201d382aafbSBarry Smith /*S 1202140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1203d382aafbSBarry Smith by string name 1204d382aafbSBarry Smith 1205d382aafbSBarry Smith Level: advanced 1206d382aafbSBarry Smith 1207140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1208d382aafbSBarry Smith S*/ 1209140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1210d382aafbSBarry Smith 1211d382aafbSBarry Smith /*E 1212d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1213d382aafbSBarry Smith 1214d382aafbSBarry Smith Level: beginner 1215d382aafbSBarry Smith 1216d382aafbSBarry Smith FILE_MODE_READ - open a file at its beginning for reading 1217d382aafbSBarry Smith 1218d382aafbSBarry Smith FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 1219d382aafbSBarry Smith 1220d382aafbSBarry Smith FILE_MODE_APPEND - open a file at end for writing 1221d382aafbSBarry Smith 1222d382aafbSBarry Smith FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 1223d382aafbSBarry Smith 1224d382aafbSBarry Smith FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1225d382aafbSBarry Smith 1226d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1227d382aafbSBarry Smith E*/ 1228d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1229639ff905SBarry Smith /* 1230639ff905SBarry Smith Defines PETSc error handling. 1231639ff905SBarry Smith */ 1232639ff905SBarry Smith #include <petscerror.h> 1233d382aafbSBarry Smith 12340700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1235014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1236014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1237014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1238d382aafbSBarry Smith 1239d382aafbSBarry Smith /* 1240d382aafbSBarry Smith Routines that get memory usage information from the OS 1241d382aafbSBarry Smith */ 1242014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1243014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1244014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1245d382aafbSBarry Smith 1246014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1247014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTime(PetscLogDouble*); 1248014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetCPUTime(PetscLogDouble*); 1249014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1250d382aafbSBarry Smith 1251d382aafbSBarry Smith /* 1252d382aafbSBarry Smith Initialization of PETSc 1253d382aafbSBarry Smith */ 1254014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1255014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1256014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1257014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1258014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1259014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1260014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1261014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1262014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1263014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1264d382aafbSBarry Smith 1265014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1266014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(const char[]); 1267d382aafbSBarry Smith 1268014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_LOCAL_WORLD; 1269014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIMerge(PetscMPIInt,PetscErrorCode (*)(void*),void*); 1270014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPISpawn(PetscMPIInt); 1271014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIFinalize(void); 1272014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIRun(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void *),void*); 1273014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIRunCtx(MPI_Comm,PetscErrorCode (*)(MPI_Comm,void*,void *),void*); 1274014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIFree(MPI_Comm,void*); 1275014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHMPIMalloc(MPI_Comm,size_t,void**); 1276d382aafbSBarry Smith 1277014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1278014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1279014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1280014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1281d382aafbSBarry Smith 1282d382aafbSBarry Smith /* 1283d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 12842981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1285d382aafbSBarry Smith */ 1286638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1287638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1288638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1289d382aafbSBarry Smith 1290d382aafbSBarry Smith /* 1291d382aafbSBarry Smith Functions that can act on any PETSc object. 1292d382aafbSBarry Smith */ 1293014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1294014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1295014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1296014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1297014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1298014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 1299014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1300014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1301014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1302014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1303014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1304014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1305014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1306014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1307014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1308014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1309014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1310014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1311014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 131200de8ff0SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],const char[],void (*)(void)); 131300de8ff0SBarry Smith #define PetscObjectComposeFunction(a,b,c,d) PetscObjectComposeFunction_Private(a,b,c,(PetscVoidFunction)(d)) 1314014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1315014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 1316014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1317014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAddOptionsHandler(PetscObject,PetscErrorCode (*)(PetscObject,void*),PetscErrorCode (*)(PetscObject,void*),void*); 1318014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectProcessOptionsHandlers(PetscObject); 1319014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroyOptionsHandlers(PetscObject); 1320014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 1321d382aafbSBarry Smith 1322665c2dedSJed Brown #include <petscviewertypes.h> 1323639ff905SBarry Smith #include <petscoptions.h> 1324639ff905SBarry Smith 1325639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1326639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer,const char[]); 1327639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 1328639ff905SBarry Smith 1329d382aafbSBarry Smith /*MC 1330d382aafbSBarry Smith PetscObjectComposeFunctionDynamic - Associates a function with a given PETSc object. 1331d382aafbSBarry Smith 1332eca87e8dSBarry Smith Synopsis: 1333f2ba6396SBarry Smith #include "petscsys.h" 1334eca87e8dSBarry Smith PetscErrorCode PetscObjectComposeFunctionDynamic(PetscObject obj,const char name[],const char fname[],void *ptr) 1335eca87e8dSBarry Smith 1336ad4df100SBarry Smith Logically Collective on PetscObject 1337d382aafbSBarry Smith 1338d382aafbSBarry Smith Input Parameters: 1339d382aafbSBarry Smith + obj - the PETSc object; this must be cast with a (PetscObject), for example, 1340d382aafbSBarry Smith PetscObjectCompose((PetscObject)mat,...); 1341d382aafbSBarry Smith . name - name associated with the child function 1342d382aafbSBarry Smith . fname - name of the function 13430298fd71SBarry Smith - ptr - function pointer (or NULL if using dynamic libraries) 1344d382aafbSBarry Smith 1345d382aafbSBarry Smith Level: advanced 1346d382aafbSBarry Smith 1347d382aafbSBarry Smith 1348d382aafbSBarry Smith Notes: 13490298fd71SBarry Smith To remove a registered routine, pass in a NULL rname and fnc(). 1350d382aafbSBarry Smith 1351d382aafbSBarry Smith PetscObjectComposeFunctionDynamic() can be used with any PETSc object (such as 1352d382aafbSBarry Smith Mat, Vec, KSP, SNES, etc.) or any user-provided object. 1353d382aafbSBarry Smith 1354d382aafbSBarry Smith The composed function must be wrapped in a EXTERN_C_BEGIN/END for this to 135520de1f94SBarry Smith work in C++/complex with dynamic link libraries (./configure options --with-shared-libraries --with-dynamic-loading) 1356d382aafbSBarry Smith enabled. 1357d382aafbSBarry Smith 1358d382aafbSBarry Smith Concepts: objects^composing functions 1359d382aafbSBarry Smith Concepts: composing functions 1360d382aafbSBarry Smith Concepts: functions^querying 1361d382aafbSBarry Smith Concepts: objects^querying 1362d382aafbSBarry Smith Concepts: querying objects 1363d382aafbSBarry Smith 1364d382aafbSBarry Smith .seealso: PetscObjectQueryFunction() 1365d382aafbSBarry Smith M*/ 1366d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1367d382aafbSBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,0) 1368d382aafbSBarry Smith #else 136900de8ff0SBarry Smith #define PetscObjectComposeFunctionDynamic(a,b,c,d) PetscObjectComposeFunction(a,b,c,d) 1370d382aafbSBarry Smith #endif 1371d382aafbSBarry Smith 1372014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction(PetscObject,const char[],void (**)(void)); 1373014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1374014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1375014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1376014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1377014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1378014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1379014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1380014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1381014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1382014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1383014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1384014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1385d382aafbSBarry Smith 1386ec7429eaSBarry Smith #if defined(PETSC_HAVE_AMS) 1387f05ece33SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectAMSViewOff(PetscObject); 1388b90c6cbeSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectAMSSetBlock(PetscObject,PetscBool); 1389b90c6cbeSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectAMSBlock(PetscObject); 1390ec7429eaSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectAMSGrantAccess(PetscObject); 1391ec7429eaSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectAMSTakeAccess(PetscObject); 1392ec7429eaSBarry Smith #else 1393f05ece33SBarry Smith #define PetscObjectAMSViewOff(obj) 0 1394ec7429eaSBarry Smith #define PetscObjectAMSSetBlock(obj,flg) 0 1395ec7429eaSBarry Smith #define PetscObjectAMSBlock(obj) 0 1396ec7429eaSBarry Smith #define PetscObjectAMSGrantAccess(obj) 0 1397ec7429eaSBarry Smith #define PetscObjectAMSTakeAccess(obj) 0 1398ec7429eaSBarry Smith #endif 1399b90c6cbeSBarry Smith 14007d5d4d99SBarry Smith typedef void* PetscDLHandle; 1401e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 1402e4d177b5SBarry Smith extern PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 14037d5d4d99SBarry Smith extern PetscErrorCode PetscDLClose(PetscDLHandle *); 14047d5d4d99SBarry Smith extern PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 14057d5d4d99SBarry Smith 1406d382aafbSBarry Smith 14075fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1408a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 14095fe58b6fSBarry Smith #endif 14107eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1411a64a8e02SBarry Smith 1412d382aafbSBarry Smith /*S 1413140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1414d382aafbSBarry Smith 14151d0fab5eSBarry Smith Level: developer 1416d382aafbSBarry Smith 14171d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 14181d0fab5eSBarry Smith 1419140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1420d382aafbSBarry Smith S*/ 1421140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1422d382aafbSBarry Smith 1423140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1424140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1425140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1426140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1427140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1428140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1429d382aafbSBarry Smith 1430d382aafbSBarry Smith /* 1431503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1432d382aafbSBarry Smith link libraries that will be loaded as needed. 1433d382aafbSBarry Smith */ 1434140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListAdd(MPI_Comm,PetscFunctionList*,const char[],const char[],void (*)(void)); 1435140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 1436140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListFind(MPI_Comm,PetscFunctionList,const char[],PetscBool,void (**)(void)); 1437140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1438d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 1439140e18c1SBarry Smith #define PetscFunctionListAddDynamic(mc,a,b,p,c) PetscFunctionListAdd(mc,a,b,p,0) 1440d382aafbSBarry Smith #else 1441140e18c1SBarry Smith #define PetscFunctionListAddDynamic(mc,a,b,p,c) PetscFunctionListAdd(mc,a,b,p,(void (*)(void))c) 1442d382aafbSBarry Smith #endif 1443140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1444140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1445140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListConcat(const char [],const char [],char []); 1446140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1447d382aafbSBarry Smith 1448d382aafbSBarry Smith /*S 1449d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1450d382aafbSBarry Smith 1451d382aafbSBarry Smith Level: advanced 1452d382aafbSBarry Smith 145320de1f94SBarry Smith --with-shared-libraries --with-dynamic-loading must be used with ./configure to use dynamic libraries 1454d382aafbSBarry Smith 1455d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1456d382aafbSBarry Smith S*/ 1457d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1458014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1459014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1460014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1461014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1462014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1463014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1464014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1465014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1466d382aafbSBarry Smith 1467d382aafbSBarry Smith /* 1468d382aafbSBarry Smith Useful utility routines 1469d382aafbSBarry Smith */ 1470014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1471014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1472014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1473014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1474014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1475014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1476d382aafbSBarry Smith 1477503cfb0cSBarry Smith /* 1478ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1479503cfb0cSBarry Smith 1480503cfb0cSBarry Smith Notes: This is useful in cases like 1481503cfb0cSBarry Smith $ int *a; 1482ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 1483ace3abfcSBarry Smith where !a does not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1484503cfb0cSBarry Smith */ 1485d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1486503cfb0cSBarry Smith 1487cae2f346SBarry Smith #if defined(PETSC_HAVE_VALGRIND) 1488cae2f346SBarry Smith # include <valgrind/valgrind.h> 1489cae2f346SBarry Smith # define PETSC_RUNNING_ON_VALGRIND RUNNING_ON_VALGRIND 1490cae2f346SBarry Smith #else 1491cae2f346SBarry Smith # define PETSC_RUNNING_ON_VALGRIND PETSC_FALSE 1492cae2f346SBarry Smith #endif 1493cae2f346SBarry Smith 1494238ccf28SShri Abhyankar 1495d382aafbSBarry Smith /*MC 1496d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1497d382aafbSBarry Smith 1498d382aafbSBarry Smith Synopsis: 1499f2ba6396SBarry Smith #include "petscsys.h" 1500d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1501d382aafbSBarry Smith 1502eca87e8dSBarry Smith Not Collective 1503eca87e8dSBarry Smith 1504d382aafbSBarry Smith Input Parameters: 1505d382aafbSBarry Smith . format - the usual printf() format string 1506d382aafbSBarry Smith 1507d382aafbSBarry Smith Level: developer 1508d382aafbSBarry Smith 1509d382aafbSBarry Smith Fortran Note: 1510d382aafbSBarry Smith This routine is not supported in Fortran. 1511d382aafbSBarry Smith 1512d382aafbSBarry Smith Concepts: help messages^printing 1513d382aafbSBarry Smith Concepts: printing^help messages 1514d382aafbSBarry Smith 1515d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1516d382aafbSBarry Smith M*/ 1517014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1518d382aafbSBarry Smith 1519fcfd50ebSBarry Smith /* 1520fcfd50ebSBarry Smith Defines PETSc profiling. 1521fcfd50ebSBarry Smith */ 15222c8e378dSBarry Smith #include <petsclog.h> 1523fcfd50ebSBarry Smith 1524b90c6cbeSBarry Smith 1525fcfd50ebSBarry Smith 1526fcfd50ebSBarry Smith /* 1527fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1528fcfd50ebSBarry Smith */ 1529014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1530014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1531014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1532014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1533014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1534014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1535014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1536fcfd50ebSBarry Smith 1537fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1538fcfd50ebSBarry Smith #include <stdarg.h> 1539014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1540014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1541014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1542fcfd50ebSBarry Smith 1543fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1544014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1545fcfd50ebSBarry Smith #endif 1546fcfd50ebSBarry Smith 1547014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1548014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1549014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1550d382aafbSBarry Smith 1551d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1552014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 1553784ad74dSJed Brown PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,PetscInt*); 1554d382aafbSBarry Smith #endif 1555d382aafbSBarry Smith 1556014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1557014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 1558014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm); 1559014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1560014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1561014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1562014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1563d382aafbSBarry Smith 1564014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1565d382aafbSBarry Smith 1566d382aafbSBarry Smith /*S 1567d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1568d382aafbSBarry Smith 1569d382aafbSBarry Smith Level: advanced 1570d382aafbSBarry Smith 1571d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1572d382aafbSBarry Smith S*/ 1573014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1574d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1575014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1576014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1577014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1578014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1579014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1580d382aafbSBarry Smith 1581d382aafbSBarry Smith /* 1582d382aafbSBarry Smith For use in debuggers 1583d382aafbSBarry Smith */ 1584014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1585014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1586014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1587014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1588014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1589d382aafbSBarry Smith 1590a663daf8SBarry Smith #include <stddef.h> 1591d382aafbSBarry Smith #if defined(PETSC_HAVE_MEMORY_H) 1592d382aafbSBarry Smith #include <memory.h> 1593d382aafbSBarry Smith #endif 1594d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1595d382aafbSBarry Smith #include <stdlib.h> 1596d382aafbSBarry Smith #endif 15976c7e564aSBarry Smith 15984a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1599d382aafbSBarry Smith #include <xmmintrin.h> 1600d382aafbSBarry Smith #endif 1601d382aafbSBarry Smith #if defined(PETSC_HAVE_STDINT_H) 1602d382aafbSBarry Smith #include <stdint.h> 1603d382aafbSBarry Smith #endif 1604d382aafbSBarry Smith 1605fcfd50ebSBarry Smith #undef __FUNCT__ 1606fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1607d382aafbSBarry Smith /*@C 1608d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1609d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1610d382aafbSBarry Smith PetscMemmove() in that case. 1611d382aafbSBarry Smith 1612d382aafbSBarry Smith Not Collective 1613d382aafbSBarry Smith 1614d382aafbSBarry Smith Input Parameters: 1615d382aafbSBarry Smith + b - pointer to initial memory space 1616d382aafbSBarry Smith - n - length (in bytes) of space to copy 1617d382aafbSBarry Smith 1618d382aafbSBarry Smith Output Parameter: 1619d382aafbSBarry Smith . a - pointer to copy space 1620d382aafbSBarry Smith 1621d382aafbSBarry Smith Level: intermediate 1622d382aafbSBarry Smith 1623d382aafbSBarry Smith Compile Option: 1624d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1625d382aafbSBarry Smith for memory copies on double precision values. 1626d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1627d382aafbSBarry Smith for memory copies on double precision values. 1628d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1629d382aafbSBarry Smith for memory copies on double precision values. 1630d382aafbSBarry Smith 1631d382aafbSBarry Smith Note: 1632d382aafbSBarry Smith This routine is analogous to memcpy(). 1633d382aafbSBarry Smith 1634503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1635503cfb0cSBarry Smith 1636d382aafbSBarry Smith Concepts: memory^copying 1637d382aafbSBarry Smith Concepts: copying^memory 1638d382aafbSBarry Smith 1639d382aafbSBarry Smith .seealso: PetscMemmove() 1640d382aafbSBarry Smith 1641d382aafbSBarry Smith @*/ 16427087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1643d382aafbSBarry Smith { 1644d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1645d382aafbSBarry Smith unsigned long al = (unsigned long) a,bl = (unsigned long) b; 1646d382aafbSBarry Smith unsigned long nl = (unsigned long) n; 1647a7e36092SMatthew G Knepley PetscFunctionBegin; 1648e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1649e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1650a7e36092SMatthew G Knepley #else 1651d382aafbSBarry Smith PetscFunctionBegin; 1652a7e36092SMatthew G Knepley #endif 1653d382aafbSBarry Smith if (a != b) { 1654d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1655e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1656d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1657d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1658d382aafbSBarry Smith #endif 1659d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1660d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1661d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1662d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1663c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1664c5df96a5SBarry Smith PetscErrorCode ierr; 1665c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 1666a83cb05cSBarry Smith PetscStackCall("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1667d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1668d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1669d382aafbSBarry Smith #else 1670d382aafbSBarry Smith size_t i; 1671d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1672d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1673d382aafbSBarry Smith #endif 1674d382aafbSBarry Smith } else { 1675d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1676d382aafbSBarry Smith } 1677d382aafbSBarry Smith #else 1678d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1679d382aafbSBarry Smith #endif 1680d382aafbSBarry Smith } 1681d382aafbSBarry Smith PetscFunctionReturn(0); 1682d382aafbSBarry Smith } 1683d382aafbSBarry Smith 1684d382aafbSBarry Smith /*@C 1685d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1686d382aafbSBarry Smith 1687d382aafbSBarry Smith Not Collective 1688d382aafbSBarry Smith 1689d382aafbSBarry Smith Input Parameters: 1690d382aafbSBarry Smith + a - pointer to beginning memory location 1691d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1692d382aafbSBarry Smith 1693d382aafbSBarry Smith Level: intermediate 1694d382aafbSBarry Smith 1695d382aafbSBarry Smith Compile Option: 1696d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1697d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1698d382aafbSBarry Smith 1699503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1700503cfb0cSBarry Smith 1701d382aafbSBarry Smith Concepts: memory^zeroing 1702d382aafbSBarry Smith Concepts: zeroing^memory 1703d382aafbSBarry Smith 1704d382aafbSBarry Smith .seealso: PetscMemcpy() 1705d382aafbSBarry Smith @*/ 17067087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 1707d382aafbSBarry Smith { 1708d382aafbSBarry Smith if (n > 0) { 1709d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1710e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 1711d382aafbSBarry Smith #endif 1712d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 1713d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1714d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 1715d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 1716d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 1717d382aafbSBarry Smith } else { 1718d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1719d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1720d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 1721d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 1722d382aafbSBarry Smith } else { 1723d382aafbSBarry Smith #endif 1724d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 1725d382aafbSBarry Smith bzero((char *)a,n); 1726d382aafbSBarry Smith #else 1727d382aafbSBarry Smith memset((char*)a,0,n); 1728d382aafbSBarry Smith #endif 1729d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 1730d382aafbSBarry Smith } 1731d382aafbSBarry Smith #endif 1732d382aafbSBarry Smith } 1733d382aafbSBarry Smith return 0; 1734d382aafbSBarry Smith } 1735d382aafbSBarry Smith 1736d382aafbSBarry Smith /*MC 1737d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 1738d382aafbSBarry Smith 1739eca87e8dSBarry Smith Synopsis: 1740f2ba6396SBarry Smith #include "petscsys.h" 1741eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 1742eca87e8dSBarry Smith 1743d382aafbSBarry Smith Not Collective 1744d382aafbSBarry Smith 1745d382aafbSBarry Smith Input Parameters: 1746d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 1747d382aafbSBarry Smith . n - number of elements to fetch 1748d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 174950d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 1750d382aafbSBarry Smith 1751d382aafbSBarry Smith Level: developer 1752d382aafbSBarry Smith 1753d382aafbSBarry Smith Notes: 1754d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 1755d382aafbSBarry Smith 175650d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 175750d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 175850d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 175963cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 176063cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 176163cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 1762d382aafbSBarry Smith 1763d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 1764d382aafbSBarry Smith address). 1765d382aafbSBarry Smith 1766d382aafbSBarry Smith Concepts: memory 1767d382aafbSBarry Smith M*/ 1768d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 1769d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 1770d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 1771d382aafbSBarry Smith } while (0) 1772d382aafbSBarry Smith 1773d382aafbSBarry Smith /* 1774d382aafbSBarry Smith Determine if some of the kernel computation routines use 1775d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 1776d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 1777d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 1778e2e64c6bSBarry Smith should be used with ./configure to turn these on. 1779d382aafbSBarry Smith */ 1780d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 1781d382aafbSBarry Smith 1782d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 1783d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 1784d382aafbSBarry Smith #endif 1785d382aafbSBarry Smith 17865a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 17875a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 1788d382aafbSBarry Smith #endif 1789d382aafbSBarry Smith 1790d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 1791d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 1792d382aafbSBarry Smith #endif 1793d382aafbSBarry Smith 1794d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 1795d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 1796d382aafbSBarry Smith #endif 1797d382aafbSBarry Smith 1798d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 1799d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 1800d382aafbSBarry Smith #endif 1801d382aafbSBarry Smith 1802d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 1803d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 1804d382aafbSBarry Smith #endif 1805d382aafbSBarry Smith 1806d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 1807d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 1808d382aafbSBarry Smith #endif 1809d382aafbSBarry Smith 1810d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 1811d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 1812d382aafbSBarry Smith #endif 1813d382aafbSBarry Smith 1814d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 1815d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 1816d382aafbSBarry Smith #endif 1817d382aafbSBarry Smith 1818d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 1819d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 1820d382aafbSBarry Smith #endif 1821d382aafbSBarry Smith 1822d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 1823d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 1824d382aafbSBarry Smith #endif 1825d382aafbSBarry Smith 1826d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 1827d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 1828d382aafbSBarry Smith #endif 1829d382aafbSBarry Smith 1830d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 1831d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 1832d382aafbSBarry Smith #endif 1833d382aafbSBarry Smith 1834d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 1835d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 1836d382aafbSBarry Smith #endif 1837d382aafbSBarry Smith 1838d382aafbSBarry Smith #endif 1839d382aafbSBarry Smith 1840d382aafbSBarry Smith /* 1841d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 1842d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 1843d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 1844d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 1845d382aafbSBarry Smith ugly extern "C" {} wrappers. 1846d382aafbSBarry Smith */ 1847d382aafbSBarry Smith #if defined(__cplusplus) 1848d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 1849d382aafbSBarry Smith #define EXTERN_C_END } 1850d382aafbSBarry Smith #else 1851d382aafbSBarry Smith #define EXTERN_C_BEGIN 1852d382aafbSBarry Smith #define EXTERN_C_END 1853d382aafbSBarry Smith #endif 1854d382aafbSBarry Smith 1855d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 1856d382aafbSBarry Smith 1857d382aafbSBarry Smith /*MC 1858d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 1859d382aafbSBarry Smith communication 1860d382aafbSBarry Smith 1861d382aafbSBarry Smith Level: beginner 1862d382aafbSBarry Smith 1863d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 1864d382aafbSBarry Smith 1865d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 1866d382aafbSBarry Smith M*/ 1867d382aafbSBarry Smith 1868d382aafbSBarry Smith /*MC 1869d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 1870d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 1871d382aafbSBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,longdouble,int,matsingle 1872d382aafbSBarry Smith 1873d382aafbSBarry Smith 1874d382aafbSBarry Smith Level: beginner 1875d382aafbSBarry Smith 1876d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, MPIU_SCALAR, PetscInt 1877d382aafbSBarry Smith M*/ 1878d382aafbSBarry Smith 1879d382aafbSBarry Smith /*MC 18808619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 18818619c96cSJed Brown 18828619c96cSJed Brown Synopsis: 18838619c96cSJed Brown #define PETSC_DESIRE_COMPLEX 18848619c96cSJed Brown #include <petscsys.h> 18858619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 18868619c96cSJed Brown 18878619c96cSJed Brown Level: beginner 18888619c96cSJed Brown 18898619c96cSJed Brown Note: 18908619c96cSJed Brown Complex numbers are automatically available if PETSc was configured --with-scalar-type=complex (in which case 18918619c96cSJed Brown PetscComplex will match PetscScalar), otherwise the macro PETSC_DESIRE_COMPLEX must be defined before including any 18928619c96cSJed Brown PETSc headers. If the compiler supports complex numbers, PetscComplex and associated variables and functions will be 18938619c96cSJed Brown defined and PETSC_HAVE_COMPLEX will be set. 18948619c96cSJed Brown 18958619c96cSJed Brown .seealso: PetscReal, PetscComplex, MPIU_COMPLEX, PetscInt, PETSC_i 18968619c96cSJed Brown M*/ 18978619c96cSJed Brown 18988619c96cSJed Brown /*MC 1899d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 1900d382aafbSBarry Smith 1901d382aafbSBarry Smith Level: beginner 1902d382aafbSBarry Smith 1903d382aafbSBarry Smith .seealso: PetscScalar, PassiveReal, PassiveScalar 1904d382aafbSBarry Smith M*/ 1905d382aafbSBarry Smith 1906d382aafbSBarry Smith /*MC 1907d382aafbSBarry Smith PassiveScalar - PETSc type that represents a PetscScalar 1908d382aafbSBarry Smith Level: beginner 1909d382aafbSBarry Smith 1910d382aafbSBarry Smith This is the same as a PetscScalar except in code that is automatically differentiated it is 1911d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 1912d382aafbSBarry Smith 1913d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PetscScalar 1914d382aafbSBarry Smith M*/ 1915d382aafbSBarry Smith 1916d382aafbSBarry Smith /*MC 1917d382aafbSBarry Smith PassiveReal - PETSc type that represents a PetscReal 1918d382aafbSBarry Smith 1919d382aafbSBarry Smith Level: beginner 1920d382aafbSBarry Smith 1921d382aafbSBarry Smith This is the same as a PetscReal except in code that is automatically differentiated it is 1922d382aafbSBarry Smith treated as a constant (not an indendent or dependent variable) 1923d382aafbSBarry Smith 1924d382aafbSBarry Smith .seealso: PetscScalar, PetscReal, PassiveScalar 1925d382aafbSBarry Smith M*/ 1926d382aafbSBarry Smith 1927d382aafbSBarry Smith /*MC 1928d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 1929d382aafbSBarry Smith 1930d382aafbSBarry Smith Level: beginner 1931d382aafbSBarry Smith 1932d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 1933d382aafbSBarry Smith pass this value 1934d382aafbSBarry Smith 1935d382aafbSBarry Smith .seealso: PetscReal, PassiveReal, PassiveScalar, PetscScalar, MPIU_INT 1936d382aafbSBarry Smith M*/ 1937d382aafbSBarry Smith 1938d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 1939d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 1940014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 1941014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 1942d382aafbSBarry Smith #else 1943d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 1944d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 1945d382aafbSBarry Smith #endif 1946d382aafbSBarry Smith #endif 1947d382aafbSBarry Smith 1948d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 1949d382aafbSBarry Smith 1950d382aafbSBarry Smith /* Limit MPI to 32-bits */ 1951d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 1952d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 1953d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 1954d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 1955d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 1956d382aafbSBarry Smith 1957c5df96a5SBarry Smith #undef __FUNCT__ 1958c5df96a5SBarry Smith #define __FUNCT__ "PetscBLASIntCast" 1959c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 1960c5df96a5SBarry Smith { 1961c5df96a5SBarry Smith PetscFunctionBegin; 1962c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 1963c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 1964c5df96a5SBarry Smith #endif 1965c5df96a5SBarry Smith *b = (PetscBLASInt)(a); 1966c5df96a5SBarry Smith PetscFunctionReturn(0); 1967c5df96a5SBarry Smith } 1968c5df96a5SBarry Smith 19694dc2109aSBarry Smith #undef __FUNCT__ 19704dc2109aSBarry Smith #define __FUNCT__ "PetscMPIIntCast" 19714dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 19724dc2109aSBarry Smith { 19734dc2109aSBarry Smith PetscFunctionBegin; 19744dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 19754dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 19764dc2109aSBarry Smith #endif 19774dc2109aSBarry Smith *b = (PetscMPIInt)(a); 19784dc2109aSBarry Smith PetscFunctionReturn(0); 19794dc2109aSBarry Smith } 19804dc2109aSBarry Smith 1981c5df96a5SBarry Smith 1982d382aafbSBarry Smith /* 19832981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 1984d382aafbSBarry Smith */ 1985d382aafbSBarry Smith #if defined(hz) 1986d382aafbSBarry Smith #undef hz 1987d382aafbSBarry Smith #endif 1988d382aafbSBarry Smith 1989d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 1990d382aafbSBarry Smith 1991d382aafbSBarry Smith 1992d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 1993d382aafbSBarry Smith #include <limits.h> 1994d382aafbSBarry Smith #endif 1995d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 1996d382aafbSBarry Smith #include <sys/param.h> 1997d382aafbSBarry Smith #endif 1998d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 1999d382aafbSBarry Smith #include <sys/types.h> 2000d382aafbSBarry Smith #endif 2001d382aafbSBarry Smith #if defined(MAXPATHLEN) 2002d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2003d382aafbSBarry Smith #elif defined(MAX_PATH) 2004d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2005d382aafbSBarry Smith #elif defined(_MAX_PATH) 2006d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2007d382aafbSBarry Smith #else 2008d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2009d382aafbSBarry Smith #endif 2010d382aafbSBarry Smith 2011d382aafbSBarry Smith /* Special support for C++ */ 20122c280183SJed Brown #if defined(PETSC_CLANGUAGE_CXX) && defined(__cplusplus) 20132c8e378dSBarry Smith #include <petscsys.hh> 20142c8e378dSBarry Smith #endif 20156c7e564aSBarry Smith 2016d382aafbSBarry Smith /*MC 2017d382aafbSBarry Smith 2018d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2019d382aafbSBarry Smith 2020d382aafbSBarry Smith $ 1) classic Fortran 77 style 2021d1716517SSatish Balay $#include "finclude/petscXXX.h" to work with material from the XXX component of PETSc 2022d382aafbSBarry Smith $ XXX variablename 2023d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2024d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2025d382aafbSBarry Smith $ 2026d382aafbSBarry Smith $ 2) classic Fortran 90 style 2027d1716517SSatish Balay $#include "finclude/petscXXX.h" 2028d1716517SSatish Balay $#include "finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2029d382aafbSBarry Smith $ XXX variablename 2030d382aafbSBarry Smith $ 2031d382aafbSBarry Smith $ 3) Using Fortran modules 2032d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2033d382aafbSBarry Smith $ use petscXXXX 2034d382aafbSBarry Smith $ XXX variablename 2035d382aafbSBarry Smith $ 2036d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2037d1716517SSatish Balay $#include "finclude/petscXXXdef.h" 2038d382aafbSBarry Smith $ use petscXXXX 2039d382aafbSBarry Smith $ type(XXX) variablename 2040e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2041d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2042d382aafbSBarry Smith 2043d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2044d382aafbSBarry Smith 2045d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2046d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2047d382aafbSBarry Smith $ integer variablename 2048d382aafbSBarry Smith $ 2049d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2050d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2051d382aafbSBarry Smith 2052d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2053d382aafbSBarry Smith for only a few PETSc functions. 2054d382aafbSBarry Smith 2055d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2056d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2057d382aafbSBarry Smith you cannot have something like 2058d382aafbSBarry Smith $ PetscInt row,col 2059d382aafbSBarry Smith $ PetscScalar val 2060d382aafbSBarry Smith $ ... 2061d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2062d382aafbSBarry Smith You must instead have 2063d382aafbSBarry Smith $ PetscInt row(1),col(1) 2064d382aafbSBarry Smith $ PetscScalar val(1) 2065d382aafbSBarry Smith $ ... 2066d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2067d382aafbSBarry Smith 2068d382aafbSBarry Smith 2069d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2070d382aafbSBarry Smith 2071d382aafbSBarry Smith Developer Notes: The finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2072d382aafbSBarry Smith automatically include their predecessors; for example finclude/petscvecdef.h includes finclude/petscisdef.h 2073d382aafbSBarry Smith 2074d382aafbSBarry Smith The finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2075d382aafbSBarry Smith their finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2076d382aafbSBarry Smith finclude/petscvec.h does NOT automatically include finclude/petscis.h 2077d382aafbSBarry Smith 2078d382aafbSBarry Smith The finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2079e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2080d382aafbSBarry Smith 2081d382aafbSBarry Smith The finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2082d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2083d382aafbSBarry Smith 2084d382aafbSBarry Smith The finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2085d382aafbSBarry Smith automatically by "make allfortranstubs". 2086d382aafbSBarry Smith 2087e2e64c6bSBarry Smith The finclude/petscXXX.h90 includes the custom finclude/ftn-custom/petscXXX.h90 and if ./configure 2088d382aafbSBarry Smith was run with --with-fortran-interfaces it also includes the finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2089d382aafbSBarry Smith include their predecessors 2090d382aafbSBarry Smith 2091d382aafbSBarry Smith Level: beginner 2092d382aafbSBarry Smith 2093d382aafbSBarry Smith M*/ 2094d382aafbSBarry Smith 2095014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2096014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2097014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2098014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2099014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2100014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 210127710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 2102d382aafbSBarry Smith 2103014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2104014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 210560e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2106014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2107014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2108014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2109014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 211017d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 211117d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2112014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2113014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 2114014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2115014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2116014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2117014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2118014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 2119014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 2120d382aafbSBarry Smith 2121014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2122014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2123d382aafbSBarry Smith 212476bdecfbSBarry Smith /*J 2125d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2126d382aafbSBarry Smith with an optional dynamic library name, for example 2127d382aafbSBarry Smith http://www.mcs.anl.gov/petsc/lib.a:myrandcreate() 2128d382aafbSBarry Smith 2129d382aafbSBarry Smith Level: beginner 2130d382aafbSBarry Smith 2131e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2132d382aafbSBarry Smith with the option --download-sprng 2133d382aafbSBarry Smith 2134d382aafbSBarry Smith .seealso: PetscRandomSetType(), PetscRandom 213576bdecfbSBarry Smith J*/ 213619fd82e9SBarry Smith typedef const char* PetscRandomType; 2137d382aafbSBarry Smith #define PETSCRAND "rand" 2138d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2139d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2140d382aafbSBarry Smith 2141d382aafbSBarry Smith /* Logging support */ 2142014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2143d382aafbSBarry Smith 2144014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(const char[]); 2145d382aafbSBarry Smith 2146d382aafbSBarry Smith /*S 2147d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2148d382aafbSBarry Smith 2149d382aafbSBarry Smith Level: intermediate 2150d382aafbSBarry Smith 2151d382aafbSBarry Smith Concepts: random numbers 2152d382aafbSBarry Smith 2153d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2154d382aafbSBarry Smith S*/ 2155d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2156d382aafbSBarry Smith 2157d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2158140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2159014dd563SJed Brown PETSC_EXTERN PetscBool PetscRandomRegisterAllCalled; 2160d382aafbSBarry Smith 2161014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomRegisterAll(const char []); 2162014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],const char[],const char[],PetscErrorCode (*)(PetscRandom)); 2163014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomRegisterDestroy(void); 216419fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2165014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 216619fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 21676d187b91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomViewFromOptions(PetscRandom,const char[]); 2168014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2169d382aafbSBarry Smith 2170d382aafbSBarry Smith /*MC 2171d382aafbSBarry Smith PetscRandomRegisterDynamic - Adds a new PetscRandom component implementation 2172d382aafbSBarry Smith 2173d382aafbSBarry Smith Synopsis: 2174f2ba6396SBarry Smith #include "petscsys.h" 21751890ba74SBarry Smith PetscErrorCode PetscRandomRegisterDynamic(const char *name, const char *path, const char *func_name, PetscErrorCode (*create_func)(PetscRandom)) 2176d382aafbSBarry Smith 2177d382aafbSBarry Smith Not Collective 2178d382aafbSBarry Smith 2179d382aafbSBarry Smith Input Parameters: 2180d382aafbSBarry Smith + name - The name of a new user-defined creation routine 2181d382aafbSBarry Smith . path - The path (either absolute or relative) of the library containing this routine 2182d382aafbSBarry Smith . func_name - The name of routine to create method context 2183d382aafbSBarry Smith - create_func - The creation routine itself 2184d382aafbSBarry Smith 2185d382aafbSBarry Smith Notes: 2186d382aafbSBarry Smith PetscRandomRegisterDynamic() may be called multiple times to add several user-defined randome number generators 2187d382aafbSBarry Smith 2188d382aafbSBarry Smith If dynamic libraries are used, then the fourth input argument (routine_create) is ignored. 2189d382aafbSBarry Smith 2190d382aafbSBarry Smith Sample usage: 2191d382aafbSBarry Smith .vb 2192d382aafbSBarry Smith PetscRandomRegisterDynamic("my_rand","/home/username/my_lib/lib/libO/solaris/libmy.a", "MyPetscRandomtorCreate", MyPetscRandomtorCreate); 2193d382aafbSBarry Smith .ve 2194d382aafbSBarry Smith 2195d382aafbSBarry Smith Then, your random type can be chosen with the procedural interface via 2196d382aafbSBarry Smith .vb 2197d382aafbSBarry Smith PetscRandomCreate(MPI_Comm, PetscRandom *); 2198d382aafbSBarry Smith PetscRandomSetType(PetscRandom,"my_random_name"); 2199d382aafbSBarry Smith .ve 2200d382aafbSBarry Smith or at runtime via the option 2201d382aafbSBarry Smith .vb 2202d382aafbSBarry Smith -random_type my_random_name 2203d382aafbSBarry Smith .ve 2204d382aafbSBarry Smith 2205d382aafbSBarry Smith Notes: $PETSC_ARCH occuring in pathname will be replaced with appropriate values. 2206d382aafbSBarry Smith 2207d382aafbSBarry Smith For an example of the code needed to interface your own random number generator see 2208d382aafbSBarry Smith src/sys/random/impls/rand/rand.c 2209d382aafbSBarry Smith 2210d382aafbSBarry Smith Level: advanced 2211d382aafbSBarry Smith 2212d382aafbSBarry Smith .keywords: PetscRandom, register 2213d382aafbSBarry Smith .seealso: PetscRandomRegisterAll(), PetscRandomRegisterDestroy(), PetscRandomRegister() 2214d382aafbSBarry Smith M*/ 2215d382aafbSBarry Smith #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 2216d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,0) 2217d382aafbSBarry Smith #else 2218d382aafbSBarry Smith #define PetscRandomRegisterDynamic(a,b,c,d) PetscRandomRegister(a,b,c,d) 2219d382aafbSBarry Smith #endif 2220d382aafbSBarry Smith 2221014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2222014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2223014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2224014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2225014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2226014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2227014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2228014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2229014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2230d382aafbSBarry Smith 2231014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2232014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2233014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2234014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2235014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2236014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2237014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 2238d382aafbSBarry Smith 2239014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2240014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2241014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2242014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2243014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2244014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2245014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2246014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2247014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2248014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2249014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2250014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscOpenSocket(char*,int,int*); 2251014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscWebServe(MPI_Comm,int); 2252d382aafbSBarry Smith 2253d382aafbSBarry Smith /* 2254d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2255d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2256d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2257d382aafbSBarry Smith PetscBinarySeek(). 2258d382aafbSBarry Smith */ 2259d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2260d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2261d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2262d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2263d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2264d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2265d382aafbSBarry Smith 2266d382aafbSBarry Smith /*E 2267d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2268d382aafbSBarry Smith 2269d382aafbSBarry Smith Level: advanced 2270d382aafbSBarry Smith 2271d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2272d382aafbSBarry Smith E*/ 2273d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2274014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2275014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2276014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2277d382aafbSBarry Smith 2278014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2279014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2280014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2281014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2282014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2283014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2284d382aafbSBarry Smith 2285014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2286014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2287014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2288014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2289014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2290f6ced4a3SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscInt,const PetscMPIInt*,const void*,PetscInt*,PetscMPIInt**,void*) PetscAttrMPIPointerWithType(6,3); 2291d382aafbSBarry Smith 22926145cd65SJed Brown /*E 22936145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 22946145cd65SJed Brown 22956145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 22966145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 22976145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 22986145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 22996145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 23006145cd65SJed Brown 23016145cd65SJed Brown Level: developer 23026145cd65SJed Brown 23036145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 23046145cd65SJed Brown E*/ 23056145cd65SJed Brown typedef enum { 23066145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 23076145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 23086145cd65SJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1 23096145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 23106145cd65SJed Brown } PetscBuildTwoSidedType; 23116145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 23126145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 23136145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 23146145cd65SJed Brown 2315014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2316d382aafbSBarry Smith 2317d382aafbSBarry Smith /*E 2318d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2319d382aafbSBarry Smith 2320d382aafbSBarry Smith Level: beginner 2321d382aafbSBarry Smith 2322d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2323d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2324d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2325d382aafbSBarry Smith E*/ 23266fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2327d382aafbSBarry Smith 2328d382aafbSBarry Smith /*MC 2329d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2330d382aafbSBarry Smith 2331d382aafbSBarry Smith Level: beginner 2332d382aafbSBarry Smith 2333d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2334eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2335eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2336d382aafbSBarry Smith 2337d382aafbSBarry Smith M*/ 2338d382aafbSBarry Smith 2339d382aafbSBarry Smith /*MC 2340d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2341d382aafbSBarry Smith value into that location 2342d382aafbSBarry Smith 2343d382aafbSBarry Smith Level: beginner 2344d382aafbSBarry Smith 2345d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2346eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2347eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2348d382aafbSBarry Smith 2349d382aafbSBarry Smith M*/ 2350d382aafbSBarry Smith 2351d382aafbSBarry Smith /*MC 2352d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2353d382aafbSBarry Smith 2354d382aafbSBarry Smith Level: beginner 2355d382aafbSBarry Smith 2356d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2357d382aafbSBarry Smith 2358d382aafbSBarry Smith M*/ 2359d382aafbSBarry Smith 2360ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2361ce94432eSBarry Smith 2362d382aafbSBarry Smith /*S 2363d382aafbSBarry Smith PetscSubcomm - Context of MPI subcommunicators, used by PCREDUNDANT 2364d382aafbSBarry Smith 2365d382aafbSBarry Smith Level: advanced 2366d382aafbSBarry Smith 2367d382aafbSBarry Smith Concepts: communicator, create 2368d382aafbSBarry Smith S*/ 2369d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2370d382aafbSBarry Smith 2371d382aafbSBarry Smith struct _n_PetscSubcomm { 2372d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2373d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2374d382aafbSBarry Smith MPI_Comm comm; /* this communicator */ 2375d382aafbSBarry Smith PetscInt n; /* num of subcommunicators under the parent communicator */ 2376d382aafbSBarry Smith PetscInt color; /* color of processors belong to this communicator */ 2377d382aafbSBarry Smith }; 2378d382aafbSBarry Smith 2379638faf0bSHong Zhang typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 23806a6fc655SJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 2381638faf0bSHong Zhang 2382014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2383014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2384014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2385014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 2386014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt,PetscMPIInt); 2387d382aafbSBarry Smith 23889e03d832SJed Brown /* Reset __FUNCT__ in case the user does not define it themselves */ 23899e03d832SJed Brown #undef __FUNCT__ 23909e03d832SJed Brown #define __FUNCT__ "User provided function" 23919e03d832SJed Brown 2392d382aafbSBarry Smith #endif 2393