1d382aafbSBarry Smith /* 2d382aafbSBarry Smith This is the main PETSc include file (for C and C++). It is included by all 3d382aafbSBarry Smith other PETSc include files, so it almost never has to be specifically included. 4d382aafbSBarry Smith */ 56c7e564aSBarry Smith #if !defined(__PETSCSYS_H) 66c7e564aSBarry Smith #define __PETSCSYS_H 7d382aafbSBarry Smith /* ========================================================================== */ 8d382aafbSBarry Smith /* 9d382aafbSBarry Smith petscconf.h is contained in ${PETSC_ARCH}/include/petscconf.h it is 101cc8b206SBarry Smith found automatically by the compiler due to the -I${PETSC_DIR}/${PETSC_ARCH}/include. 111cc8b206SBarry Smith For --prefix installs the ${PETSC_ARCH}/ does not exist and petscconf.h is in the same 121cc8b206SBarry Smith directory as the other PETSc include files. 13d382aafbSBarry Smith */ 142c8e378dSBarry Smith #include <petscconf.h> 152c8e378dSBarry Smith #include <petscfix.h> 16d382aafbSBarry Smith 1773fca5a0SBarry Smith #if defined(PETSC_DESIRE_FEATURE_TEST_MACROS) 1873fca5a0SBarry Smith /* 1973fca5a0SBarry Smith Feature test macros must be included before headers defined by IEEE Std 1003.1-2001 2073fca5a0SBarry Smith We only turn these in PETSc source files that require them by setting PETSC_DESIRE_FEATURE_TEST_MACROS 2173fca5a0SBarry Smith */ 22216f1ae6SBarry Smith #if defined(PETSC__POSIX_C_SOURCE_200112L) && !defined(_POSIX_C_SOURCE) 2373fca5a0SBarry Smith #define _POSIX_C_SOURCE 200112L 2473fca5a0SBarry Smith #endif 25216f1ae6SBarry Smith #if defined(PETSC__BSD_SOURCE) && !defined(_BSD_SOURCE) 2673fca5a0SBarry Smith #define _BSD_SOURCE 2773fca5a0SBarry Smith #endif 2807f00807SSatish Balay #if defined(PETSC__DEFAULT_SOURCE) && !defined(_DEFAULT_SOURCE) 2907f00807SSatish Balay #define _DEFAULT_SOURCE 3007f00807SSatish Balay #endif 31ea0fecefSShri Abhyankar #if defined(PETSC__GNU_SOURCE) && !defined(_GNU_SOURCE) 32ea0fecefSShri Abhyankar #define _GNU_SOURCE 33ea0fecefSShri Abhyankar #endif 3473fca5a0SBarry Smith #endif 3573fca5a0SBarry Smith 36d382aafbSBarry Smith /* ========================================================================== */ 37d382aafbSBarry Smith /* 382c280183SJed Brown This facilitates using the C version of PETSc from C++ and the C++ version from C. 39d382aafbSBarry Smith */ 401ec50b02SJed Brown #if defined(__cplusplus) 411ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_CXX 421ec50b02SJed Brown #else 431ec50b02SJed Brown # define PETSC_FUNCTION_NAME PETSC_FUNCTION_NAME_C 441ec50b02SJed Brown #endif 45d382aafbSBarry Smith 46c5e4d11fSDmitry Karpeev /* ========================================================================== */ 47c5e4d11fSDmitry Karpeev /* 48c5e4d11fSDmitry Karpeev Since PETSc manages its own extern "C" handling users should never include PETSc include 491cc8b206SBarry Smith files within extern "C". This will generate a compiler error if a user does put the include 501cc8b206SBarry Smith file within an extern "C". 51c5e4d11fSDmitry Karpeev */ 52c5e4d11fSDmitry Karpeev #if defined(__cplusplus) 53c5e4d11fSDmitry Karpeev void assert_never_put_petsc_headers_inside_an_extern_c(int); void assert_never_put_petsc_headers_inside_an_extern_c(double); 54c5e4d11fSDmitry Karpeev #endif 55c5e4d11fSDmitry Karpeev 56ed938b00SJed Brown #if defined(__cplusplus) 57ed938b00SJed Brown # define PETSC_RESTRICT PETSC_CXX_RESTRICT 58ed938b00SJed Brown #else 59ed938b00SJed Brown # define PETSC_RESTRICT PETSC_C_RESTRICT 60ed938b00SJed Brown #endif 61ed938b00SJed Brown 62ed938b00SJed Brown #if defined(__cplusplus) 63ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_CXX_STATIC_INLINE 64ed938b00SJed Brown #else 65ed938b00SJed Brown # define PETSC_STATIC_INLINE PETSC_C_STATIC_INLINE 66ed938b00SJed Brown #endif 67ed938b00SJed Brown 68ab699e31SSatish Balay #if defined(_WIN32) && defined(PETSC_USE_SHARED_LIBRARIES) /* For Win32 shared libraries */ 69014dd563SJed Brown # define PETSC_DLLEXPORT __declspec(dllexport) 70014dd563SJed Brown # define PETSC_DLLIMPORT __declspec(dllimport) 7121f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 7226703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_CXX) && defined(__cplusplus) 7326703958SBarry Smith # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 7426703958SBarry Smith # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7526703958SBarry Smith # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 7626703958SBarry Smith #elif defined(PETSC_USE_VISIBILITY_C) && !defined(__cplusplus) 77014dd563SJed Brown # define PETSC_DLLEXPORT __attribute__((visibility ("default"))) 78014dd563SJed Brown # define PETSC_DLLIMPORT __attribute__((visibility ("default"))) 7921f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL __attribute__((visibility ("hidden"))) 80d382aafbSBarry Smith #else 81014dd563SJed Brown # define PETSC_DLLEXPORT 82014dd563SJed Brown # define PETSC_DLLIMPORT 8321f66b81SJed Brown # define PETSC_VISIBILITY_INTERNAL 84014dd563SJed Brown #endif 85014dd563SJed Brown 86014dd563SJed Brown #if defined(petsc_EXPORTS) /* CMake defines this when building the shared library */ 87014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLEXPORT 88014dd563SJed Brown #else /* Win32 users need this to import symbols from petsc.dll */ 89014dd563SJed Brown # define PETSC_VISIBILITY_PUBLIC PETSC_DLLIMPORT 90014dd563SJed Brown #endif 91014dd563SJed Brown 921cc8b206SBarry Smith /* 931cc8b206SBarry Smith Functions tagged with PETSC_EXTERN in the header files are 941cc8b206SBarry Smith always defined as extern "C" when compiled with C++ so they may be 951cc8b206SBarry Smith used from C and are always visible in the shared libraries 961cc8b206SBarry Smith */ 972c280183SJed Brown #if defined(__cplusplus) 98014dd563SJed Brown #define PETSC_EXTERN extern "C" PETSC_VISIBILITY_PUBLIC 99638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF extern "C" 10021f66b81SJed Brown #define PETSC_INTERN extern "C" PETSC_VISIBILITY_INTERNAL 101014dd563SJed Brown #else 102014dd563SJed Brown #define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC 103638cfed1SJed Brown #define PETSC_EXTERN_TYPEDEF 1046258c452SJed Brown #define PETSC_INTERN extern PETSC_VISIBILITY_INTERNAL 105d382aafbSBarry Smith #endif 10627710113SBarry Smith 1072c8e378dSBarry Smith #include <petscversion.h> 108301d30feSBarry Smith #define PETSC_AUTHOR_INFO " The PETSc Team\n petsc-maint@mcs.anl.gov\n http://www.mcs.anl.gov/petsc/\n" 109d382aafbSBarry Smith 110d382aafbSBarry Smith /* ========================================================================== */ 111d382aafbSBarry Smith 112d382aafbSBarry Smith /* 113d382aafbSBarry Smith Defines the interface to MPI allowing the use of all MPI functions. 114d382aafbSBarry Smith 115d382aafbSBarry Smith PETSc does not use the C++ binding of MPI at ALL. The following flag 116d382aafbSBarry Smith makes sure the C++ bindings are not included. The C++ bindings REQUIRE 117d382aafbSBarry Smith putting mpi.h before ANY C++ include files, we cannot control this 118d382aafbSBarry Smith with all PETSc users. Users who want to use the MPI C++ bindings can include 119d382aafbSBarry Smith mpicxx.h directly in their code 120d382aafbSBarry Smith */ 121fa9e63e2SJed Brown #if !defined(MPICH_SKIP_MPICXX) 122d382aafbSBarry Smith # define MPICH_SKIP_MPICXX 1 123fa9e63e2SJed Brown #endif 124fa9e63e2SJed Brown #if !defined(OMPI_SKIP_MPICXX) 125d382aafbSBarry Smith # define OMPI_SKIP_MPICXX 1 126fa9e63e2SJed Brown #endif 127076e11b5SSatish Balay #if !defined(OMPI_WANT_MPI_INTERFACE_WARNING) 128076e11b5SSatish Balay # define OMPI_WANT_MPI_INTERFACE_WARNING 0 129076e11b5SSatish Balay #endif 1302c8e378dSBarry Smith #include <mpi.h> 13165013866SBarry Smith 132d382aafbSBarry Smith /* 133a7886beaSBarry Smith Perform various sanity checks that the correct mpi.h is being included at compile time. 134a7886beaSBarry Smith This usually happens because 135a7886beaSBarry Smith * either an unexpected mpi.h is in the default compiler path (i.e. in /usr/include) or 136a7886beaSBarry Smith * an extra include path -I/something (which contains the unexpected mpi.h) is being passed to the compiler 137a7886beaSBarry Smith */ 138a7886beaSBarry Smith #if defined(PETSC_HAVE_MPIUNI) 139a7886beaSBarry Smith # if !defined(__MPIUNI_H) 140a7886beaSBarry Smith # error "PETSc was configured with --with-mpi=0 but now appears to be compiling using a different mpi.h" 141a7886beaSBarry Smith # endif 142a7886beaSBarry Smith #elif defined(PETSC_HAVE_MPICH_NUMVERSION) 143a7886beaSBarry Smith # if !defined(MPICH_NUMVERSION) 144a7886beaSBarry Smith # error "PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h" 145a7886beaSBarry Smith # elif MPICH_NUMVERSION != PETSC_HAVE_MPICH_NUMVERSION 146a7886beaSBarry Smith # error "PETSc was configured with one MPICH mpi.h version but now appears to be compiling using a different MPICH mpi.h version" 147a7886beaSBarry Smith # endif 148a7886beaSBarry Smith #elif defined(PETSC_HAVE_OMPI_MAJOR_VERSION) 149a7886beaSBarry Smith # if !defined(OMPI_MAJOR_VERSION) 150a7886beaSBarry Smith # error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h" 151c3ac57cfSSatish Balay # elif (OMPI_MAJOR_VERSION != PETSC_HAVE_OMPI_MAJOR_VERSION) || (OMPI_MINOR_VERSION != PETSC_HAVE_OMPI_MINOR_VERSION) || (OMPI_RELEASE_VERSION != PETSC_HAVE_OMPI_RELEASE_VERSION) 152c3ac57cfSSatish Balay # error "PETSc was configured with one OpenMPI mpi.h version but now appears to be compiling using a different OpenMPI mpi.h version" 153a7886beaSBarry Smith # endif 154a7886beaSBarry Smith #endif 155a7886beaSBarry Smith 156a7886beaSBarry Smith /* 1572981ebdbSBarry Smith Need to put stdio.h AFTER mpi.h for MPICH2 with C++ compiler 158d382aafbSBarry Smith see the top of mpicxx.h in the MPICH2 distribution. 159d382aafbSBarry Smith */ 160d382aafbSBarry Smith #include <stdio.h> 161d382aafbSBarry Smith 162d382aafbSBarry Smith /* MSMPI on 32bit windows requires this yukky hack - that breaks MPI standard compliance */ 163d382aafbSBarry Smith #if !defined(MPIAPI) 164d382aafbSBarry Smith #define MPIAPI 165d382aafbSBarry Smith #endif 166d382aafbSBarry Smith 1671cc8b206SBarry Smith /* 1681cc8b206SBarry Smith Support for Clang (>=3.2) matching type tag arguments with void* buffer types. 1691cc8b206SBarry Smith This allows the compiler to detect cases where the MPI datatype argument passed to a MPI routine 1701cc8b206SBarry Smith does not match the actual type of the argument being passed in 1711cc8b206SBarry Smith */ 172c5e4d11fSDmitry Karpeev #if defined(__has_attribute) && defined(works_with_const_which_is_not_true) 173894dd566SJed Brown # if __has_attribute(argument_with_type_tag) && __has_attribute(pointer_with_type_tag) && __has_attribute(type_tag_for_datatype) 174894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) __attribute__((pointer_with_type_tag(MPI,bufno,typeno))) 1758ad47952SJed Brown # define PetscAttrMPITypeTag(type) __attribute__((type_tag_for_datatype(MPI,type))) 1768ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) __attribute__((type_tag_for_datatype(MPI,type,layout_compatible))) 177894dd566SJed Brown # endif 178894dd566SJed Brown #endif 179894dd566SJed Brown #if !defined(PetscAttrMPIPointerWithType) 180894dd566SJed Brown # define PetscAttrMPIPointerWithType(bufno,typeno) 1818ad47952SJed Brown # define PetscAttrMPITypeTag(type) 1828ad47952SJed Brown # define PetscAttrMPITypeTagLayoutCompatible(type) 183894dd566SJed Brown #endif 184b3506946SBarry Smith 185d382aafbSBarry Smith /*MC 1861957e957SBarry Smith PetscErrorCode - datatype used for return error code from almost all PETSc functions 187d382aafbSBarry Smith 188d382aafbSBarry Smith Level: beginner 189d382aafbSBarry Smith 190d382aafbSBarry Smith .seealso: CHKERRQ, SETERRQ 191d382aafbSBarry Smith M*/ 192d382aafbSBarry Smith typedef int PetscErrorCode; 193d382aafbSBarry Smith 194d382aafbSBarry Smith /*MC 195d382aafbSBarry Smith 196503cfb0cSBarry Smith PetscClassId - A unique id used to identify each PETSc class. 197d382aafbSBarry Smith 1981957e957SBarry Smith Notes: Use PetscClassIdRegister() to obtain a new value for a new class being created. Usually 1991957e957SBarry Smith XXXInitializePackage() calls it for each class it defines. 2001957e957SBarry Smith 2011957e957SBarry Smith Developer Notes: Internal integer stored in the _p_PetscObject data structure. 2021957e957SBarry Smith These are all computed by an offset from the lowest one, PETSC_SMALLEST_CLASSID. 2031957e957SBarry Smith 2041957e957SBarry Smith Level: developer 205d382aafbSBarry Smith 2060700a824SBarry Smith .seealso: PetscClassIdRegister(), PetscLogEventRegister(), PetscHeaderCreate() 207d382aafbSBarry Smith M*/ 2080700a824SBarry Smith typedef int PetscClassId; 209d382aafbSBarry Smith 210d382aafbSBarry Smith 211d382aafbSBarry Smith /*MC 212d382aafbSBarry Smith PetscMPIInt - datatype used to represent 'int' parameters to MPI functions. 213d382aafbSBarry Smith 214d382aafbSBarry Smith Level: intermediate 215d382aafbSBarry Smith 216d382aafbSBarry Smith Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 2173b2a8c54SBarry Smith standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 218d382aafbSBarry Smith 2194dc2109aSBarry Smith PetscMPIIntCast(a,&b) checks if the given PetscInt a will fit in a PetscMPIInt, if not it 2202981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error. 221d382aafbSBarry Smith 2221cc8b206SBarry Smith .seealso: PetscBLASInt, PetscInt, PetscMPIIntCast() 223d382aafbSBarry Smith 224d382aafbSBarry Smith M*/ 225d382aafbSBarry Smith typedef int PetscMPIInt; 226d382aafbSBarry Smith 227d382aafbSBarry Smith /*MC 228d382aafbSBarry Smith PetscEnum - datatype used to pass enum types within PETSc functions. 229d382aafbSBarry Smith 230d382aafbSBarry Smith Level: intermediate 231d382aafbSBarry Smith 232d382aafbSBarry Smith .seealso: PetscOptionsGetEnum(), PetscOptionsEnum(), PetscBagRegisterEnum() 233d382aafbSBarry Smith M*/ 234d382aafbSBarry Smith typedef enum { ENUM_DUMMY } PetscEnum; 2355a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_ENUM PetscAttrMPITypeTag(PetscEnum); 236d382aafbSBarry Smith 237fab38c73SJed Brown #if defined(PETSC_HAVE_STDINT_H) 238fab38c73SJed Brown #include <stdint.h> 239fab38c73SJed Brown #endif 240a05e1a72SSatish Balay #if defined (PETSC_HAVE_INTTYPES_H) 241*13e758fdSSatish Balay #define __STDC_FORMAT_MACROS /* required for using PRId64 from c++ */ 242a05e1a72SSatish Balay #include <inttypes.h> 24337354ed4SSatish Balay # if !defined(PRId64) 24437354ed4SSatish Balay # define PRId64 "ld" 24537354ed4SSatish Balay # endif 246a05e1a72SSatish Balay #endif 247fab38c73SJed Brown 248d382aafbSBarry Smith /*MC 249d382aafbSBarry Smith PetscInt - PETSc type that represents integer - used primarily to 2503b2a8c54SBarry Smith represent size of arrays and indexing into arrays. Its size can be configured with the option 251d382aafbSBarry Smith --with-64-bit-indices - to be either 32bit or 64bit [default 32 bit ints] 252d382aafbSBarry Smith 253d382aafbSBarry Smith Level: intermediate 254d382aafbSBarry Smith 255d382aafbSBarry Smith .seealso: PetscScalar, PetscBLASInt, PetscMPIInt 256d382aafbSBarry Smith M*/ 25737354ed4SSatish Balay #if defined(PETSC_HAVE_STDINT_H) && defined(PETSC_HAVE_INTTYPES_H) && defined(PETSC_HAVE_MPI_INT64_T) /* MPI_INT64_T is not guaranteed to be a macro */ 258fab38c73SJed Brown typedef int64_t Petsc64bitInt; 259bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 260a05e1a72SSatish Balay # define PetscInt64_FMT PRId64 261fab38c73SJed Brown #elif (PETSC_SIZEOF_LONG_LONG == 8) 262f505b413SSatish Balay typedef long long Petsc64bitInt; 263bd84f1cfSSatish Balay # define MPIU_INT64 MPI_LONG_LONG_INT 264a05e1a72SSatish Balay # define PetscInt64_FMT "lld" 265f505b413SSatish Balay #elif defined(PETSC_HAVE___INT64) 266236ed0a3SSatish Balay typedef __int64 Petsc64bitInt; 267bd84f1cfSSatish Balay # define MPIU_INT64 MPI_INT64_T 268a05e1a72SSatish Balay # define PetscInt64_FMT "ld" 269236ed0a3SSatish Balay #else 270bd84f1cfSSatish Balay #error "cannot determine Petsc64bitInt type" 271236ed0a3SSatish Balay #endif 272d382aafbSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 273236ed0a3SSatish Balay typedef Petsc64bitInt PetscInt; 274bd84f1cfSSatish Balay #define MPIU_INT MPIU_INT64 275a05e1a72SSatish Balay #define PetscInt_FMT PetscInt64_FMT 276d382aafbSBarry Smith #else 277d382aafbSBarry Smith typedef int PetscInt; 278d382aafbSBarry Smith #define MPIU_INT MPI_INT 279a05e1a72SSatish Balay #define PetscInt_FMT "d" 280d382aafbSBarry Smith #endif 281d382aafbSBarry Smith 282702bc34aSSatish Balay /*MC 283702bc34aSSatish Balay PetscBLASInt - datatype used to represent 'int' parameters to BLAS/LAPACK functions. 284702bc34aSSatish Balay 285702bc34aSSatish Balay Level: intermediate 286702bc34aSSatish Balay 287702bc34aSSatish Balay Notes: usually this is the same as PetscInt, but if PETSc was built with --with-64-bit-indices but 288702bc34aSSatish Balay standard C/Fortran integers are 32 bit then this is NOT the same as PetscInt it remains 32 bit 289702bc34aSSatish Balay (except on very rare BLAS/LAPACK implementations that support 64 bit integers see the note below). 290702bc34aSSatish Balay 291c5df96a5SBarry Smith PetscErrorCode PetscBLASIntCast(a,&b) checks if the given PetscInt a will fit in a PetscBLASInt, if not it 2922981ebdbSBarry Smith generates a PETSC_ERR_ARG_OUTOFRANGE error 293702bc34aSSatish Balay 2942981ebdbSBarry Smith Installation Notes: The 64bit versions of MATLAB ship with BLAS and LAPACK that use 64 bit integers for sizes etc, 295702bc34aSSatish Balay if you run ./configure with the option 296702bc34aSSatish Balay --with-blas-lapack-lib=[/Applications/MATLAB_R2010b.app/bin/maci64/libmwblas.dylib,/Applications/MATLAB_R2010b.app/bin/maci64/libmwlapack.dylib] 2972981ebdbSBarry Smith but you need to also use --known-64-bit-blas-indices. 2982981ebdbSBarry Smith 2992981ebdbSBarry Smith MKL also ships with 64 bit integer versions of the BLAS and LAPACK, if you select those you must also ./configure with --known-64-bit-blas-indices 3002981ebdbSBarry Smith 3012981ebdbSBarry Smith Developer Notes: Eventually ./configure should automatically determine the size of the integers used by BLAS/LAPACK. 302702bc34aSSatish Balay 303702bc34aSSatish Balay External packages such as hypre, ML, SuperLU etc do not provide any support for passing 64 bit integers to BLAS/LAPACK so cannot 304702bc34aSSatish Balay be used with PETSc if you have set PetscBLASInt to long int. 305702bc34aSSatish Balay 3061cc8b206SBarry Smith .seealso: PetscMPIInt, PetscInt, PetscBLASIntCast() 307702bc34aSSatish Balay 308702bc34aSSatish Balay M*/ 309702bc34aSSatish Balay #if defined(PETSC_HAVE_64BIT_BLAS_INDICES) 310702bc34aSSatish Balay typedef Petsc64bitInt PetscBLASInt; 311702bc34aSSatish Balay #else 312702bc34aSSatish Balay typedef int PetscBLASInt; 313702bc34aSSatish Balay #endif 314702bc34aSSatish Balay 31558b60935SBarry Smith /*EC 31658b60935SBarry Smith 3172981ebdbSBarry Smith PetscPrecision - indicates what precision the object is using. This is currently not used. 31858b60935SBarry Smith 31958b60935SBarry Smith Level: advanced 32058b60935SBarry Smith 32158b60935SBarry Smith .seealso: PetscObjectSetPrecision() 32258b60935SBarry Smith E*/ 32358b60935SBarry Smith typedef enum { PETSC_PRECISION_SINGLE=4,PETSC_PRECISION_DOUBLE=8 } PetscPrecision; 324014dd563SJed Brown PETSC_EXTERN const char *PetscPrecisions[]; 32558b60935SBarry Smith 326503cfb0cSBarry Smith /* 327503cfb0cSBarry Smith For the rare cases when one needs to send a size_t object with MPI 328503cfb0cSBarry Smith */ 329d382aafbSBarry Smith #if (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_INT) 330adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED 331d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG) 332adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG 333d382aafbSBarry Smith #elif (PETSC_SIZEOF_SIZE_T) == (PETSC_SIZEOF_LONG_LONG) 334adcec1e5SJed Brown #define MPIU_SIZE_T MPI_UNSIGNED_LONG_LONG 335d382aafbSBarry Smith #else 336d382aafbSBarry Smith #error "Unknown size for size_t! Send us a bugreport at petsc-maint@mcs.anl.gov" 337d382aafbSBarry Smith #endif 338d382aafbSBarry Smith 339d382aafbSBarry Smith /* 340d382aafbSBarry Smith You can use PETSC_STDOUT as a replacement of stdout. You can also change 341d382aafbSBarry Smith the value of PETSC_STDOUT to redirect all standard output elsewhere 342d382aafbSBarry Smith */ 343014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDOUT; 344d382aafbSBarry Smith 345d382aafbSBarry Smith /* 346d382aafbSBarry Smith You can use PETSC_STDERR as a replacement of stderr. You can also change 347d382aafbSBarry Smith the value of PETSC_STDERR to redirect all standard error elsewhere 348d382aafbSBarry Smith */ 349014dd563SJed Brown PETSC_EXTERN FILE* PETSC_STDERR; 350d382aafbSBarry Smith 351d382aafbSBarry Smith /*MC 352d382aafbSBarry Smith PetscUnlikely - hints the compiler that the given condition is usually FALSE 353d382aafbSBarry Smith 354d382aafbSBarry Smith Synopsis: 355aaa7dc30SBarry Smith #include <petscsys.h> 356ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 357d382aafbSBarry Smith 358eca87e8dSBarry Smith Not Collective 359eca87e8dSBarry Smith 360d382aafbSBarry Smith Input Parameters: 361d382aafbSBarry Smith . cond - condition or expression 362d382aafbSBarry Smith 363d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 364d382aafbSBarry Smith branch is unlikely. 365d382aafbSBarry Smith 366d382aafbSBarry Smith Level: advanced 367d382aafbSBarry Smith 368d382aafbSBarry Smith .seealso: PetscLikely(), CHKERRQ 369d382aafbSBarry Smith M*/ 370d382aafbSBarry Smith 371d382aafbSBarry Smith /*MC 372d382aafbSBarry Smith PetscLikely - hints the compiler that the given condition is usually TRUE 373d382aafbSBarry Smith 374d382aafbSBarry Smith Synopsis: 375aaa7dc30SBarry Smith #include <petscsys.h> 376ace3abfcSBarry Smith PetscBool PetscUnlikely(PetscBool cond) 377d382aafbSBarry Smith 378eca87e8dSBarry Smith Not Collective 379eca87e8dSBarry Smith 380d382aafbSBarry Smith Input Parameters: 381d382aafbSBarry Smith . cond - condition or expression 382d382aafbSBarry Smith 383d382aafbSBarry Smith Note: This returns the same truth value, it is only a hint to compilers that the resulting 384d382aafbSBarry Smith branch is likely. 385d382aafbSBarry Smith 386d382aafbSBarry Smith Level: advanced 387d382aafbSBarry Smith 388d382aafbSBarry Smith .seealso: PetscUnlikely() 389d382aafbSBarry Smith M*/ 390d382aafbSBarry Smith #if defined(PETSC_HAVE_BUILTIN_EXPECT) 391d382aafbSBarry Smith # define PetscUnlikely(cond) __builtin_expect(!!(cond),0) 392d382aafbSBarry Smith # define PetscLikely(cond) __builtin_expect(!!(cond),1) 393d382aafbSBarry Smith #else 394cd3f4ce9SJed Brown # define PetscUnlikely(cond) (cond) 395cd3f4ce9SJed Brown # define PetscLikely(cond) (cond) 396d382aafbSBarry Smith #endif 397d382aafbSBarry Smith 398d382aafbSBarry Smith /* 399d382aafbSBarry Smith Declare extern C stuff after including external header files 400d382aafbSBarry Smith */ 401d382aafbSBarry Smith 402d382aafbSBarry Smith 403d382aafbSBarry Smith /* 404d382aafbSBarry Smith Basic PETSc constants 405d382aafbSBarry Smith */ 406d382aafbSBarry Smith 407d382aafbSBarry Smith /*E 408ace3abfcSBarry Smith PetscBool - Logical variable. Actually an int in C and a logical in Fortran. 409d382aafbSBarry Smith 410d382aafbSBarry Smith Level: beginner 411d382aafbSBarry Smith 412ace3abfcSBarry Smith Developer Note: Why have PetscBool , why not use bool in C? The problem is that K and R C, C99 and C++ all have different mechanisms for 41334e82e7dSBarry Smith boolean values. It is not easy to have a simple macro that that will work properly in all circumstances with all three mechanisms. 41434e82e7dSBarry Smith 4151cc8b206SBarry Smith .seealso: PETSC_TRUE, PETSC_FALSE, PetscNot() 416d382aafbSBarry Smith E*/ 417ace3abfcSBarry Smith typedef enum { PETSC_FALSE,PETSC_TRUE } PetscBool; 4186a6fc655SJed Brown PETSC_EXTERN const char *const PetscBools[]; 4195a576424SJed Brown PETSC_EXTERN MPI_Datatype MPIU_BOOL PetscAttrMPITypeTag(PetscBool); 42070b3c8c7SBarry Smith 4218b49ba18SBarry Smith /* 4228b49ba18SBarry Smith Defines some elementary mathematics functions and constants. 4238b49ba18SBarry Smith */ 4248b49ba18SBarry Smith #include <petscmath.h> 4258b49ba18SBarry Smith 42670b3c8c7SBarry Smith /*E 42770b3c8c7SBarry Smith PetscCopyMode - Determines how an array passed to certain functions is copied or retained 42870b3c8c7SBarry Smith 42970b3c8c7SBarry Smith Level: beginner 43070b3c8c7SBarry Smith 43170b3c8c7SBarry Smith $ PETSC_COPY_VALUES - the array values are copied into new space, the user is free to reuse or delete the passed in array 43270b3c8c7SBarry Smith $ PETSC_OWN_POINTER - the array values are NOT copied, the object takes ownership of the array and will free it later, the user cannot change or 43370b3c8c7SBarry Smith $ delete the array. The array MUST have been obtained with PetscMalloc(). Hence this mode cannot be used in Fortran. 43470b3c8c7SBarry Smith $ PETSC_USE_POINTER - the array values are NOT copied, the object uses the array but does NOT take ownership of the array. The user cannot use 43570b3c8c7SBarry Smith the array but the user must delete the array after the object is destroyed. 43670b3c8c7SBarry Smith 43770b3c8c7SBarry Smith E*/ 43870b3c8c7SBarry Smith typedef enum { PETSC_COPY_VALUES, PETSC_OWN_POINTER, PETSC_USE_POINTER} PetscCopyMode; 4396a6fc655SJed Brown PETSC_EXTERN const char *const PetscCopyModes[]; 440d382aafbSBarry Smith 441d382aafbSBarry Smith /*MC 442ace3abfcSBarry Smith PETSC_FALSE - False value of PetscBool 443d382aafbSBarry Smith 444d382aafbSBarry Smith Level: beginner 445d382aafbSBarry Smith 446d382aafbSBarry Smith Note: Zero integer 447d382aafbSBarry Smith 448ace3abfcSBarry Smith .seealso: PetscBool, PETSC_TRUE 449d382aafbSBarry Smith M*/ 450d382aafbSBarry Smith 451d382aafbSBarry Smith /*MC 452ace3abfcSBarry Smith PETSC_TRUE - True value of PetscBool 453d382aafbSBarry Smith 454d382aafbSBarry Smith Level: beginner 455d382aafbSBarry Smith 456d382aafbSBarry Smith Note: Nonzero integer 457d382aafbSBarry Smith 458ace3abfcSBarry Smith .seealso: PetscBool, PETSC_FALSE 459d382aafbSBarry Smith M*/ 460d382aafbSBarry Smith 461d382aafbSBarry Smith /*MC 4620298fd71SBarry Smith PETSC_NULL - standard way of passing in a null or array or pointer. This is deprecated in C/C++ simply use NULL 463d382aafbSBarry Smith 464d382aafbSBarry Smith Level: beginner 465d382aafbSBarry Smith 466d382aafbSBarry Smith Notes: accepted by many PETSc functions to not set a parameter and instead use 467d382aafbSBarry Smith some default 468d382aafbSBarry Smith 469d382aafbSBarry Smith This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 470503cfb0cSBarry Smith PETSC_NULL_DOUBLE_PRECISION, PETSC_NULL_FUNCTION, PETSC_NULL_OBJECT etc 471d382aafbSBarry Smith 472d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 473d382aafbSBarry Smith 474d382aafbSBarry Smith M*/ 4753bcbec90SJed Brown #define PETSC_NULL NULL 476d382aafbSBarry Smith 477d382aafbSBarry Smith /*MC 4780298fd71SBarry Smith PETSC_IGNORE - same as NULL, means PETSc will ignore this argument 479d382aafbSBarry Smith 480d382aafbSBarry Smith Level: beginner 481d382aafbSBarry Smith 482d382aafbSBarry Smith Note: accepted by many PETSc functions to not set a parameter and instead use 483d382aafbSBarry Smith some default 484d382aafbSBarry Smith 485d382aafbSBarry Smith Fortran Notes: This macro does not exist in Fortran; you must use PETSC_NULL_INTEGER, 486d382aafbSBarry Smith PETSC_NULL_DOUBLE_PRECISION etc 487d382aafbSBarry Smith 488d382aafbSBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_NULL, PETSC_DETERMINE 489d382aafbSBarry Smith 490d382aafbSBarry Smith M*/ 4910298fd71SBarry Smith #define PETSC_IGNORE NULL 492d382aafbSBarry Smith 493d382aafbSBarry Smith /*MC 494557d4da8SBarry Smith PETSC_DECIDE - standard way of passing in integer or floating point parameter 495557d4da8SBarry Smith where you wish PETSc to use the default. 496557d4da8SBarry Smith 497557d4da8SBarry Smith Level: beginner 498557d4da8SBarry Smith 499557d4da8SBarry Smith .seealso: PETSC_NULL, PETSC_DEFAULT, PETSC_IGNORE, PETSC_DETERMINE 500557d4da8SBarry Smith 501557d4da8SBarry Smith M*/ 502557d4da8SBarry Smith #define PETSC_DECIDE -1 503557d4da8SBarry Smith 504557d4da8SBarry Smith /*MC 505d382aafbSBarry Smith PETSC_DETERMINE - standard way of passing in integer or floating point parameter 506d382aafbSBarry Smith where you wish PETSc to compute the required value. 507d382aafbSBarry Smith 508d382aafbSBarry Smith Level: beginner 509d382aafbSBarry Smith 510557d4da8SBarry Smith Developer Note: I would like to use const PetscInt PETSC_DETERMINE = PETSC_DECIDE; but for 511557d4da8SBarry Smith some reason this is not allowed by the standard even though PETSC_DECIDE is a constant value. 512557d4da8SBarry Smith 5130298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_DEFAULT, PETSC_IGNORE, VecSetSizes() 514d382aafbSBarry Smith 515d382aafbSBarry Smith M*/ 516d382aafbSBarry Smith #define PETSC_DETERMINE PETSC_DECIDE 517d382aafbSBarry Smith 518d382aafbSBarry Smith /*MC 519557d4da8SBarry Smith PETSC_DEFAULT - standard way of passing in integer or floating point parameter 520557d4da8SBarry Smith where you wish PETSc to use the default. 521557d4da8SBarry Smith 522557d4da8SBarry Smith Level: beginner 523557d4da8SBarry Smith 5242d80014bSBarry Smith Fortran Notes: You need to use PETSC_DEFAULT_INTEGER or PETSC_DEFAULT_REAL. 525557d4da8SBarry Smith 5260298fd71SBarry Smith .seealso: PETSC_DECIDE, PETSC_IGNORE, PETSC_DETERMINE 527557d4da8SBarry Smith 528557d4da8SBarry Smith M*/ 529557d4da8SBarry Smith #define PETSC_DEFAULT -2 530557d4da8SBarry Smith 531557d4da8SBarry Smith /*MC 532d382aafbSBarry Smith PETSC_COMM_WORLD - the equivalent of the MPI_COMM_WORLD communicator which represents 533d382aafbSBarry Smith all the processs that PETSc knows about. 534d382aafbSBarry Smith 535d382aafbSBarry Smith Level: beginner 536d382aafbSBarry Smith 537d382aafbSBarry Smith Notes: By default PETSC_COMM_WORLD and MPI_COMM_WORLD are identical unless you wish to 538d382aafbSBarry Smith run PETSc on ONLY a subset of MPI_COMM_WORLD. In that case create your new (smaller) 539d382aafbSBarry Smith communicator, call it, say comm, and set PETSC_COMM_WORLD = comm BEFORE calling 540a990b902SBarry Smith PetscInitialize(), but after MPI_Init() has been called. 541a990b902SBarry Smith 542a990b902SBarry Smith The value of PETSC_COMM_WORLD should never be USED/accessed before PetscInitialize() 543a990b902SBarry Smith is called because it may not have a valid value yet. 544d382aafbSBarry Smith 545d382aafbSBarry Smith .seealso: PETSC_COMM_SELF 546d382aafbSBarry Smith 547d382aafbSBarry Smith M*/ 548014dd563SJed Brown PETSC_EXTERN MPI_Comm PETSC_COMM_WORLD; 549d382aafbSBarry Smith 550d382aafbSBarry Smith /*MC 551503cfb0cSBarry Smith PETSC_COMM_SELF - This is always MPI_COMM_SELF 552d382aafbSBarry Smith 553d382aafbSBarry Smith Level: beginner 554d382aafbSBarry Smith 555a990b902SBarry Smith Notes: Do not USE/access or set this variable before PetscInitialize() has been called. 556a990b902SBarry Smith 557d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD 558d382aafbSBarry Smith 559d382aafbSBarry Smith M*/ 560d382aafbSBarry Smith #define PETSC_COMM_SELF MPI_COMM_SELF 561d382aafbSBarry Smith 562d6f2c3cbSBarry Smith PETSC_EXTERN PetscBool PetscBeganMPI; 563014dd563SJed Brown PETSC_EXTERN PetscBool PetscInitializeCalled; 564014dd563SJed Brown PETSC_EXTERN PetscBool PetscFinalizeCalled; 565014dd563SJed Brown PETSC_EXTERN PetscBool PetscCUSPSynchronize; 5664cf1874eSKarl Rupp PETSC_EXTERN PetscBool PetscViennaCLSynchronize; 56782f73ecaSAlejandro Lamas Daviña PETSC_EXTERN PetscBool PetscCUDASynchronize; 568d382aafbSBarry Smith 569014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetHelpVersionFunctions(PetscErrorCode (*)(MPI_Comm),PetscErrorCode (*)(MPI_Comm)); 570014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDuplicate(MPI_Comm,MPI_Comm*,int*); 571014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommDestroy(MPI_Comm*); 572d382aafbSBarry Smith 573d382aafbSBarry Smith /*MC 574854ce69bSBarry Smith PetscMalloc - Allocates memory, One should use PetscMalloc1() or PetscCalloc1() usually instead of this 575d382aafbSBarry Smith 576eca87e8dSBarry Smith Synopsis: 577aaa7dc30SBarry Smith #include <petscsys.h> 578eca87e8dSBarry Smith PetscErrorCode PetscMalloc(size_t m,void **result) 579eca87e8dSBarry Smith 580eca87e8dSBarry Smith Not Collective 581eca87e8dSBarry Smith 582d382aafbSBarry Smith Input Parameter: 583d382aafbSBarry Smith . m - number of bytes to allocate 584d382aafbSBarry Smith 585d382aafbSBarry Smith Output Parameter: 586d382aafbSBarry Smith . result - memory allocated 587d382aafbSBarry Smith 588d382aafbSBarry Smith Level: beginner 589d382aafbSBarry Smith 59049d7da52SJed Brown Notes: 59149d7da52SJed Brown Memory is always allocated at least double aligned 592d382aafbSBarry Smith 59349d7da52SJed Brown It is safe to allocate size 0 and pass the resulting pointer (which may or may not be NULL) to PetscFree(). 594d382aafbSBarry Smith 595d382aafbSBarry Smith .seealso: PetscFree(), PetscNew() 596d382aafbSBarry Smith 597d382aafbSBarry Smith Concepts: memory allocation 598d382aafbSBarry Smith 599d382aafbSBarry Smith M*/ 60049d7da52SJed Brown #define PetscMalloc(a,b) ((*PetscTrMalloc)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__,(void**)(b))) 601d382aafbSBarry Smith 602d382aafbSBarry Smith /*MC 603503cfb0cSBarry Smith PetscAddrAlign - Rounds up an address to PETSC_MEMALIGN alignment 604d382aafbSBarry Smith 605d382aafbSBarry Smith Synopsis: 606aaa7dc30SBarry Smith #include <petscsys.h> 607d382aafbSBarry Smith void *PetscAddrAlign(void *addr) 608d382aafbSBarry Smith 609eca87e8dSBarry Smith Not Collective 610eca87e8dSBarry Smith 611eca87e8dSBarry Smith Input Parameters: 612eca87e8dSBarry Smith . addr - address to align (any pointer type) 613eca87e8dSBarry Smith 614d382aafbSBarry Smith Level: developer 615d382aafbSBarry Smith 616d382aafbSBarry Smith .seealso: PetscMallocAlign() 617d382aafbSBarry Smith 618d382aafbSBarry Smith Concepts: memory allocation 619d382aafbSBarry Smith M*/ 620d382aafbSBarry Smith #define PetscAddrAlign(a) (void*)((((PETSC_UINTPTR_T)(a))+(PETSC_MEMALIGN-1)) & ~(PETSC_MEMALIGN-1)) 621d382aafbSBarry Smith 622d382aafbSBarry Smith /*MC 623785e854fSJed Brown PetscMalloc1 - Allocates an array of memory aligned to PETSC_MEMALIGN 624d382aafbSBarry Smith 625eca87e8dSBarry Smith Synopsis: 626aaa7dc30SBarry Smith #include <petscsys.h> 627785e854fSJed Brown PetscErrorCode PetscMalloc1(size_t m1,type **r1) 628785e854fSJed Brown 629785e854fSJed Brown Not Collective 630785e854fSJed Brown 631785e854fSJed Brown Input Parameter: 632785e854fSJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 633785e854fSJed Brown 634785e854fSJed Brown Output Parameter: 635785e854fSJed Brown . r1 - memory allocated in first chunk 636785e854fSJed Brown 637785e854fSJed Brown Level: developer 638785e854fSJed Brown 6391795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 640785e854fSJed Brown 641785e854fSJed Brown Concepts: memory allocation 642785e854fSJed Brown 643785e854fSJed Brown M*/ 644f0ba7cfcSLisandro Dalcin #define PetscMalloc1(m1,r1) PetscMalloc((m1)*sizeof(**(r1)),r1) 645785e854fSJed Brown 646785e854fSJed Brown /*MC 6471795a4d1SJed Brown PetscCalloc1 - Allocates a cleared (zeroed) array of memory aligned to PETSC_MEMALIGN 6481795a4d1SJed Brown 6491795a4d1SJed Brown Synopsis: 650aaa7dc30SBarry Smith #include <petscsys.h> 6511795a4d1SJed Brown PetscErrorCode PetscCalloc1(size_t m1,type **r1) 6521795a4d1SJed Brown 6531795a4d1SJed Brown Not Collective 6541795a4d1SJed Brown 6551795a4d1SJed Brown Input Parameter: 6561795a4d1SJed Brown . m1 - number of elements to allocate in 1st chunk (may be zero) 6571795a4d1SJed Brown 6581795a4d1SJed Brown Output Parameter: 6591795a4d1SJed Brown . r1 - memory allocated in first chunk 6601795a4d1SJed Brown 6611795a4d1SJed Brown Level: developer 6621795a4d1SJed Brown 6631795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 6641795a4d1SJed Brown 6651795a4d1SJed Brown Concepts: memory allocation 6661795a4d1SJed Brown 6671795a4d1SJed Brown M*/ 6681795a4d1SJed Brown #define PetscCalloc1(m1,r1) (PetscMalloc1((m1),r1) || PetscMemzero(*(r1),(m1)*sizeof(**(r1)))) 6691795a4d1SJed Brown 6701795a4d1SJed Brown /*MC 671dcca6d9dSJed Brown PetscMalloc2 - Allocates 2 arrays of memory both aligned to PETSC_MEMALIGN 672d382aafbSBarry Smith 673eca87e8dSBarry Smith Synopsis: 674aaa7dc30SBarry Smith #include <petscsys.h> 675dcca6d9dSJed Brown PetscErrorCode PetscMalloc2(size_t m1,type **r1,size_t m2,type **r2) 676eca87e8dSBarry Smith 677eca87e8dSBarry Smith Not Collective 678eca87e8dSBarry Smith 679d382aafbSBarry Smith Input Parameter: 680d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 681dcca6d9dSJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 682d382aafbSBarry Smith 683d382aafbSBarry Smith Output Parameter: 684d382aafbSBarry Smith + r1 - memory allocated in first chunk 685d382aafbSBarry Smith - r2 - memory allocated in second chunk 686d382aafbSBarry Smith 687d382aafbSBarry Smith Level: developer 688d382aafbSBarry Smith 6891795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc1(), PetscCalloc2() 690d382aafbSBarry Smith 691d382aafbSBarry Smith Concepts: memory allocation 692d382aafbSBarry Smith 693d382aafbSBarry Smith M*/ 69420a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 6951d2f33c5SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2))) 696d382aafbSBarry Smith #else 697ceba6b73SMatthew G. Knepley #define PetscMalloc2(m1,r1,m2,r2) ((((m1)+(m2)) ? (*(r2) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(PETSC_MEMALIGN-1),r1)) : 0) \ 698ceba6b73SMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),0) \ 6993589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0)) 700d382aafbSBarry Smith #endif 701d382aafbSBarry Smith 702d382aafbSBarry Smith /*MC 7031795a4d1SJed Brown PetscCalloc2 - Allocates 2 cleared (zeroed) arrays of memory both aligned to PETSC_MEMALIGN 704d382aafbSBarry Smith 705eca87e8dSBarry Smith Synopsis: 706aaa7dc30SBarry Smith #include <petscsys.h> 7071795a4d1SJed Brown PetscErrorCode PetscCalloc2(size_t m1,type **r1,size_t m2,type **r2) 708eca87e8dSBarry Smith 709eca87e8dSBarry Smith Not Collective 710eca87e8dSBarry Smith 711d382aafbSBarry Smith Input Parameter: 712d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 7131795a4d1SJed Brown - m2 - number of elements to allocate in 2nd chunk (may be zero) 7141795a4d1SJed Brown 7151795a4d1SJed Brown Output Parameter: 7161795a4d1SJed Brown + r1 - memory allocated in first chunk 7171795a4d1SJed Brown - r2 - memory allocated in second chunk 7181795a4d1SJed Brown 7191795a4d1SJed Brown Level: developer 7201795a4d1SJed Brown 7211795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc1(), PetscMalloc2() 7221795a4d1SJed Brown 7231795a4d1SJed Brown Concepts: memory allocation 7241795a4d1SJed Brown M*/ 7251795a4d1SJed Brown #define PetscCalloc2(m1,r1,m2,r2) (PetscMalloc2((m1),(r1),(m2),(r2)) || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2)))) 7261795a4d1SJed Brown 7271795a4d1SJed Brown /*MC 728dcca6d9dSJed Brown PetscMalloc3 - Allocates 3 arrays of memory, all aligned to PETSC_MEMALIGN 729d382aafbSBarry Smith 730d382aafbSBarry Smith Synopsis: 731aaa7dc30SBarry Smith #include <petscsys.h> 732dcca6d9dSJed Brown PetscErrorCode PetscMalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 733d382aafbSBarry Smith 734d382aafbSBarry Smith Not Collective 735d382aafbSBarry Smith 736d382aafbSBarry Smith Input Parameter: 737d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 738d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 739dcca6d9dSJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 740d382aafbSBarry Smith 741d382aafbSBarry Smith Output Parameter: 742d382aafbSBarry Smith + r1 - memory allocated in first chunk 743d382aafbSBarry Smith . r2 - memory allocated in second chunk 744d382aafbSBarry Smith - r3 - memory allocated in third chunk 745d382aafbSBarry Smith 746d382aafbSBarry Smith Level: developer 747d382aafbSBarry Smith 7481795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc3(), PetscFree3() 749d382aafbSBarry Smith 750d382aafbSBarry Smith Concepts: memory allocation 751d382aafbSBarry Smith 752d382aafbSBarry Smith M*/ 75320a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 7541d2f33c5SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3))) 755d382aafbSBarry Smith #else 756ceba6b73SMatthew G. Knepley #define PetscMalloc3(m1,r1,m2,r2,m3,r3) ((((m1)+(m2)+(m3)) ? (*(r2) = 0,*(r3) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+2*(PETSC_MEMALIGN-1),r1)) : 0) \ 757278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),0) \ 7583589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0)) 759d382aafbSBarry Smith #endif 760d382aafbSBarry Smith 761d382aafbSBarry Smith /*MC 7621795a4d1SJed Brown PetscCalloc3 - Allocates 3 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 763d382aafbSBarry Smith 764eca87e8dSBarry Smith Synopsis: 765aaa7dc30SBarry Smith #include <petscsys.h> 7661795a4d1SJed Brown PetscErrorCode PetscCalloc3(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3) 767eca87e8dSBarry Smith 768eca87e8dSBarry Smith Not Collective 769eca87e8dSBarry Smith 770d382aafbSBarry Smith Input Parameter: 771d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 772d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 7731795a4d1SJed Brown - m3 - number of elements to allocate in 3rd chunk (may be zero) 7741795a4d1SJed Brown 7751795a4d1SJed Brown Output Parameter: 7761795a4d1SJed Brown + r1 - memory allocated in first chunk 7771795a4d1SJed Brown . r2 - memory allocated in second chunk 7781795a4d1SJed Brown - r3 - memory allocated in third chunk 7791795a4d1SJed Brown 7801795a4d1SJed Brown Level: developer 7811795a4d1SJed Brown 7821795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscCalloc2(), PetscMalloc3(), PetscFree3() 7831795a4d1SJed Brown 7841795a4d1SJed Brown Concepts: memory allocation 7851795a4d1SJed Brown M*/ 7861795a4d1SJed Brown #define PetscCalloc3(m1,r1,m2,r2,m3,r3) \ 7871795a4d1SJed Brown (PetscMalloc3((m1),(r1),(m2),(r2),(m3),(r3)) \ 7881795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3)))) 7891795a4d1SJed Brown 7901795a4d1SJed Brown /*MC 791dcca6d9dSJed Brown PetscMalloc4 - Allocates 4 arrays of memory, all aligned to PETSC_MEMALIGN 792d382aafbSBarry Smith 793d382aafbSBarry Smith Synopsis: 794aaa7dc30SBarry Smith #include <petscsys.h> 795dcca6d9dSJed Brown PetscErrorCode PetscMalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 796d382aafbSBarry Smith 797d382aafbSBarry Smith Not Collective 798d382aafbSBarry Smith 799d382aafbSBarry Smith Input Parameter: 800d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 801d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 802d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 803dcca6d9dSJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 804d382aafbSBarry Smith 805d382aafbSBarry Smith Output Parameter: 806d382aafbSBarry Smith + r1 - memory allocated in first chunk 807d382aafbSBarry Smith . r2 - memory allocated in second chunk 808d382aafbSBarry Smith . r3 - memory allocated in third chunk 809d382aafbSBarry Smith - r4 - memory allocated in fourth chunk 810d382aafbSBarry Smith 811d382aafbSBarry Smith Level: developer 812d382aafbSBarry Smith 8131795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 814d382aafbSBarry Smith 815d382aafbSBarry Smith Concepts: memory allocation 816d382aafbSBarry Smith 817d382aafbSBarry Smith M*/ 81820a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 8191d2f33c5SMatthew G. Knepley #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4))) 820d382aafbSBarry Smith #else 821dcca6d9dSJed Brown #define PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 822ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+3*(PETSC_MEMALIGN-1),r1)) : 0) \ 823278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),0) \ 8243589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0)) 825d382aafbSBarry Smith #endif 826d382aafbSBarry Smith 827d382aafbSBarry Smith /*MC 8281795a4d1SJed Brown PetscCalloc4 - Allocates 4 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 829d382aafbSBarry Smith 830eca87e8dSBarry Smith Synopsis: 831aaa7dc30SBarry Smith #include <petscsys.h> 8321795a4d1SJed Brown PetscErrorCode PetscCalloc4(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4) 833eca87e8dSBarry Smith 834eca87e8dSBarry Smith Not Collective 835eca87e8dSBarry Smith 836d382aafbSBarry Smith Input Parameter: 837d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 838d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 839d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 8401795a4d1SJed Brown - m4 - number of elements to allocate in 4th chunk (may be zero) 8411795a4d1SJed Brown 8421795a4d1SJed Brown Output Parameter: 8431795a4d1SJed Brown + r1 - memory allocated in first chunk 8441795a4d1SJed Brown . r2 - memory allocated in second chunk 8451795a4d1SJed Brown . r3 - memory allocated in third chunk 8461795a4d1SJed Brown - r4 - memory allocated in fourth chunk 8471795a4d1SJed Brown 8481795a4d1SJed Brown Level: developer 8491795a4d1SJed Brown 8501795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc4(), PetscFree4() 8511795a4d1SJed Brown 8521795a4d1SJed Brown Concepts: memory allocation 8531795a4d1SJed Brown 8541795a4d1SJed Brown M*/ 8551795a4d1SJed Brown #define PetscCalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8561795a4d1SJed Brown (PetscMalloc4(m1,r1,m2,r2,m3,r3,m4,r4) \ 8571795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 8581795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4)))) 8591795a4d1SJed Brown 8601795a4d1SJed Brown /*MC 861dcca6d9dSJed Brown PetscMalloc5 - Allocates 5 arrays of memory, all aligned to PETSC_MEMALIGN 862d382aafbSBarry Smith 863d382aafbSBarry Smith Synopsis: 864aaa7dc30SBarry Smith #include <petscsys.h> 865dcca6d9dSJed Brown PetscErrorCode PetscMalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 866d382aafbSBarry Smith 867d382aafbSBarry Smith Not Collective 868d382aafbSBarry Smith 869d382aafbSBarry Smith Input Parameter: 870d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 871d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 872d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 873d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 874dcca6d9dSJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 875d382aafbSBarry Smith 876d382aafbSBarry Smith Output Parameter: 877d382aafbSBarry Smith + r1 - memory allocated in first chunk 878d382aafbSBarry Smith . r2 - memory allocated in second chunk 879d382aafbSBarry Smith . r3 - memory allocated in third chunk 880d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 881d382aafbSBarry Smith - r5 - memory allocated in fifth chunk 882d382aafbSBarry Smith 883d382aafbSBarry Smith Level: developer 884d382aafbSBarry Smith 8851795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc5(), PetscFree5() 886d382aafbSBarry Smith 887d382aafbSBarry Smith Concepts: memory allocation 888d382aafbSBarry Smith 889d382aafbSBarry Smith M*/ 89020a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 8911d2f33c5SMatthew G. Knepley #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5))) 892d382aafbSBarry Smith #else 893dcca6d9dSJed Brown #define PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 894ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+4*(PETSC_MEMALIGN-1),r1)) : 0) \ 895278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),0) \ 8963589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0)) 897d382aafbSBarry Smith #endif 898d382aafbSBarry Smith 899d382aafbSBarry Smith /*MC 9001795a4d1SJed Brown PetscCalloc5 - Allocates 5 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 901d382aafbSBarry Smith 902eca87e8dSBarry Smith Synopsis: 903aaa7dc30SBarry Smith #include <petscsys.h> 9041795a4d1SJed Brown PetscErrorCode PetscCalloc5(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5) 905eca87e8dSBarry Smith 906eca87e8dSBarry Smith Not Collective 907eca87e8dSBarry Smith 908d382aafbSBarry Smith Input Parameter: 909d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 910d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 911d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 912d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 9131795a4d1SJed Brown - m5 - number of elements to allocate in 5th chunk (may be zero) 9141795a4d1SJed Brown 9151795a4d1SJed Brown Output Parameter: 9161795a4d1SJed Brown + r1 - memory allocated in first chunk 9171795a4d1SJed Brown . r2 - memory allocated in second chunk 9181795a4d1SJed Brown . r3 - memory allocated in third chunk 9191795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9201795a4d1SJed Brown - r5 - memory allocated in fifth chunk 9211795a4d1SJed Brown 9221795a4d1SJed Brown Level: developer 9231795a4d1SJed Brown 9241795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc5(), PetscFree5() 9251795a4d1SJed Brown 9261795a4d1SJed Brown Concepts: memory allocation 9271795a4d1SJed Brown 9281795a4d1SJed Brown M*/ 9291795a4d1SJed Brown #define PetscCalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 9301795a4d1SJed Brown (PetscMalloc5(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5) \ 9311795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 9321795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5)))) 933d382aafbSBarry Smith 934d382aafbSBarry Smith /*MC 935dcca6d9dSJed Brown PetscMalloc6 - Allocates 6 arrays of memory, all aligned to PETSC_MEMALIGN 936d382aafbSBarry Smith 937d382aafbSBarry Smith Synopsis: 938aaa7dc30SBarry Smith #include <petscsys.h> 939dcca6d9dSJed Brown PetscErrorCode PetscMalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 940d382aafbSBarry Smith 941d382aafbSBarry Smith Not Collective 942d382aafbSBarry Smith 943d382aafbSBarry Smith Input Parameter: 944d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 945d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 946d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 947d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 948d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 949dcca6d9dSJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 950d382aafbSBarry Smith 951d382aafbSBarry Smith Output Parameter: 952d382aafbSBarry Smith + r1 - memory allocated in first chunk 953d382aafbSBarry Smith . r2 - memory allocated in second chunk 954d382aafbSBarry Smith . r3 - memory allocated in third chunk 955d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 956d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 957d382aafbSBarry Smith - r6 - memory allocated in sixth chunk 958d382aafbSBarry Smith 959d382aafbSBarry Smith Level: developer 960d382aafbSBarry Smith 9611795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc6(), PetscFree3(), PetscFree4(), PetscFree5(), PetscFree6() 962d382aafbSBarry Smith 963d382aafbSBarry Smith Concepts: memory allocation 964d382aafbSBarry Smith 965d382aafbSBarry Smith M*/ 96620a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 9671d2f33c5SMatthew G. Knepley #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6))) 968d382aafbSBarry Smith #else 969dcca6d9dSJed Brown #define PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 970ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+5*(PETSC_MEMALIGN-1),r1)) : 0) \ 971278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),0) \ 9723589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0)) 973d382aafbSBarry Smith #endif 974d382aafbSBarry Smith 975d382aafbSBarry Smith /*MC 9761795a4d1SJed Brown PetscCalloc6 - Allocates 6 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 977d382aafbSBarry Smith 978eca87e8dSBarry Smith Synopsis: 979aaa7dc30SBarry Smith #include <petscsys.h> 9801795a4d1SJed Brown PetscErrorCode PetscCalloc6(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6) 981eca87e8dSBarry Smith 982eca87e8dSBarry Smith Not Collective 983eca87e8dSBarry Smith 984d382aafbSBarry Smith Input Parameter: 985d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 986d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 987d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 988d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 989d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 9901795a4d1SJed Brown - m6 - number of elements to allocate in 6th chunk (may be zero) 9911795a4d1SJed Brown 9921795a4d1SJed Brown Output Parameter: 9931795a4d1SJed Brown + r1 - memory allocated in first chunk 9941795a4d1SJed Brown . r2 - memory allocated in second chunk 9951795a4d1SJed Brown . r3 - memory allocated in third chunk 9961795a4d1SJed Brown . r4 - memory allocated in fourth chunk 9971795a4d1SJed Brown . r5 - memory allocated in fifth chunk 9981795a4d1SJed Brown - r6 - memory allocated in sixth chunk 9991795a4d1SJed Brown 10001795a4d1SJed Brown Level: developer 10011795a4d1SJed Brown 10021795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc6(), PetscFree6() 10031795a4d1SJed Brown 10041795a4d1SJed Brown Concepts: memory allocation 10051795a4d1SJed Brown M*/ 10061795a4d1SJed Brown #define PetscCalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 10071795a4d1SJed Brown (PetscMalloc6(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6) \ 10081795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 10091795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6)))) 10101795a4d1SJed Brown 10111795a4d1SJed Brown /*MC 1012dcca6d9dSJed Brown PetscMalloc7 - Allocates 7 arrays of memory, all aligned to PETSC_MEMALIGN 1013d382aafbSBarry Smith 1014d382aafbSBarry Smith Synopsis: 1015aaa7dc30SBarry Smith #include <petscsys.h> 1016dcca6d9dSJed Brown PetscErrorCode PetscMalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 1017d382aafbSBarry Smith 1018d382aafbSBarry Smith Not Collective 1019d382aafbSBarry Smith 1020d382aafbSBarry Smith Input Parameter: 1021d382aafbSBarry Smith + m1 - number of elements to allocate in 1st chunk (may be zero) 1022d382aafbSBarry Smith . m2 - number of elements to allocate in 2nd chunk (may be zero) 1023d382aafbSBarry Smith . m3 - number of elements to allocate in 3rd chunk (may be zero) 1024d382aafbSBarry Smith . m4 - number of elements to allocate in 4th chunk (may be zero) 1025d382aafbSBarry Smith . m5 - number of elements to allocate in 5th chunk (may be zero) 1026d382aafbSBarry Smith . m6 - number of elements to allocate in 6th chunk (may be zero) 1027dcca6d9dSJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 1028d382aafbSBarry Smith 1029d382aafbSBarry Smith Output Parameter: 1030d382aafbSBarry Smith + r1 - memory allocated in first chunk 1031d382aafbSBarry Smith . r2 - memory allocated in second chunk 1032d382aafbSBarry Smith . r3 - memory allocated in third chunk 1033d382aafbSBarry Smith . r4 - memory allocated in fourth chunk 1034d382aafbSBarry Smith . r5 - memory allocated in fifth chunk 1035d382aafbSBarry Smith . r6 - memory allocated in sixth chunk 1036eca87e8dSBarry Smith - r7 - memory allocated in seventh chunk 1037d382aafbSBarry Smith 1038d382aafbSBarry Smith Level: developer 1039d382aafbSBarry Smith 10401795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscCalloc7(), PetscFree7() 1041d382aafbSBarry Smith 1042d382aafbSBarry Smith Concepts: memory allocation 1043d382aafbSBarry Smith 1044d382aafbSBarry Smith M*/ 104520a89254SJed Brown #if !defined(PETSC_USE_MALLOC_COALESCED) 10461d2f33c5SMatthew G. Knepley #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) (PetscMalloc1((m1),(r1)) || PetscMalloc1((m2),(r2)) || PetscMalloc1((m3),(r3)) || PetscMalloc1((m4),(r4)) || PetscMalloc1((m5),(r5)) || PetscMalloc1((m6),(r6)) || PetscMalloc1((m7),(r7))) 1047d382aafbSBarry Smith #else 1048dcca6d9dSJed Brown #define PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 1049ceba6b73SMatthew G. Knepley ((((m1)+(m2)+(m3)+(m4)+(m5)+(m6)+(m7)) ? (*(r2) = 0, *(r3) = 0, *(r4) = 0,*(r5) = 0,*(r6) = 0,*(r7) = 0,PetscMalloc((m1)*sizeof(**(r1))+(m2)*sizeof(**(r2))+(m3)*sizeof(**(r3))+(m4)*sizeof(**(r4))+(m5)*sizeof(**(r5))+(m6)*sizeof(**(r6))+(m7)*sizeof(**(r7))+6*(PETSC_MEMALIGN-1),r1)) : 0) \ 1050278791cbSMatthew G. Knepley || (*(void**)(r2) = PetscAddrAlign(*(r1)+(m1)),*(void**)(r3) = PetscAddrAlign(*(r2)+(m2)),*(void**)(r4) = PetscAddrAlign(*(r3)+(m3)),*(void**)(r5) = PetscAddrAlign(*(r4)+(m4)),*(void**)(r6) = PetscAddrAlign(*(r5)+(m5)),*(void**)(r7) = PetscAddrAlign(*(r6)+(m6)),0) \ 10513589d31bSMatthew G. Knepley || (!(m1) ? (*(r1) = 0,0) : 0) || (!(m2) ? (*(r2) = 0,0) : 0) || (!(m3) ? (*(r3) = 0,0) : 0) || (!(m4) ? (*(r4) = 0,0) : 0) || (!(m5) ? (*(r5) = 0,0) : 0) || (!(m6) ? (*(r6) = 0,0) : 0) || (!(m7) ? (*(r7) = 0,0) : 0)) 1052d382aafbSBarry Smith #endif 1053d382aafbSBarry Smith 1054d382aafbSBarry Smith /*MC 10551795a4d1SJed Brown PetscCalloc7 - Allocates 7 cleared (zeroed) arrays of memory, all aligned to PETSC_MEMALIGN 10561795a4d1SJed Brown 10571795a4d1SJed Brown Synopsis: 1058aaa7dc30SBarry Smith #include <petscsys.h> 10591795a4d1SJed Brown PetscErrorCode PetscCalloc7(size_t m1,type **r1,size_t m2,type **r2,size_t m3,type **r3,size_t m4,type **r4,size_t m5,type **r5,size_t m6,type **r6,size_t m7,type **r7) 10601795a4d1SJed Brown 10611795a4d1SJed Brown Not Collective 10621795a4d1SJed Brown 10631795a4d1SJed Brown Input Parameter: 10641795a4d1SJed Brown + m1 - number of elements to allocate in 1st chunk (may be zero) 10651795a4d1SJed Brown . m2 - number of elements to allocate in 2nd chunk (may be zero) 10661795a4d1SJed Brown . m3 - number of elements to allocate in 3rd chunk (may be zero) 10671795a4d1SJed Brown . m4 - number of elements to allocate in 4th chunk (may be zero) 10681795a4d1SJed Brown . m5 - number of elements to allocate in 5th chunk (may be zero) 10691795a4d1SJed Brown . m6 - number of elements to allocate in 6th chunk (may be zero) 10701795a4d1SJed Brown - m7 - number of elements to allocate in 7th chunk (may be zero) 10711795a4d1SJed Brown 10721795a4d1SJed Brown Output Parameter: 10731795a4d1SJed Brown + r1 - memory allocated in first chunk 10741795a4d1SJed Brown . r2 - memory allocated in second chunk 10751795a4d1SJed Brown . r3 - memory allocated in third chunk 10761795a4d1SJed Brown . r4 - memory allocated in fourth chunk 10771795a4d1SJed Brown . r5 - memory allocated in fifth chunk 10781795a4d1SJed Brown . r6 - memory allocated in sixth chunk 10791795a4d1SJed Brown - r7 - memory allocated in seventh chunk 10801795a4d1SJed Brown 10811795a4d1SJed Brown Level: developer 10821795a4d1SJed Brown 10831795a4d1SJed Brown .seealso: PetscFree(), PetscNew(), PetscMalloc(), PetscMalloc2(), PetscMalloc7(), PetscFree7() 10841795a4d1SJed Brown 10851795a4d1SJed Brown Concepts: memory allocation 10861795a4d1SJed Brown M*/ 10871795a4d1SJed Brown #define PetscCalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10887ba0cc92SJed Brown (PetscMalloc7(m1,r1,m2,r2,m3,r3,m4,r4,m5,r5,m6,r6,m7,r7) \ 10891795a4d1SJed Brown || PetscMemzero(*(r1),(m1)*sizeof(**(r1))) || PetscMemzero(*(r2),(m2)*sizeof(**(r2))) || PetscMemzero(*(r3),(m3)*sizeof(**(r3))) \ 10901795a4d1SJed Brown || PetscMemzero(*(r4),(m4)*sizeof(**(r4))) || PetscMemzero(*(r5),(m5)*sizeof(**(r5))) || PetscMemzero(*(r6),(m6)*sizeof(**(r6))) \ 10917ba0cc92SJed Brown || PetscMemzero(*(r7),(m7)*sizeof(**(r7)))) 10921795a4d1SJed Brown 10931795a4d1SJed Brown /*MC 1094503cfb0cSBarry Smith PetscNew - Allocates memory of a particular type, zeros the memory! Aligned to PETSC_MEMALIGN 1095d382aafbSBarry Smith 1096eca87e8dSBarry Smith Synopsis: 1097aaa7dc30SBarry Smith #include <petscsys.h> 1098b00a9115SJed Brown PetscErrorCode PetscNew(type **result) 1099eca87e8dSBarry Smith 1100eca87e8dSBarry Smith Not Collective 1101eca87e8dSBarry Smith 1102d382aafbSBarry Smith Output Parameter: 1103b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1104d382aafbSBarry Smith 1105d382aafbSBarry Smith Level: beginner 1106d382aafbSBarry Smith 1107ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNewLog() 1108d382aafbSBarry Smith 1109d382aafbSBarry Smith Concepts: memory allocation 1110d382aafbSBarry Smith 1111d382aafbSBarry Smith M*/ 1112b00a9115SJed Brown #define PetscNew(b) PetscCalloc1(1,(b)) 1113ad0619ddSBarry Smith 1114ad0619ddSBarry Smith /*MC 1115b00a9115SJed Brown PetscNewLog - Allocates memory of a type matching pointer, zeros the memory! Aligned to PETSC_MEMALIGN. Associates the memory allocated 1116ad0619ddSBarry Smith with the given object using PetscLogObjectMemory(). 1117ad0619ddSBarry Smith 1118ad0619ddSBarry Smith Synopsis: 1119aaa7dc30SBarry Smith #include <petscsys.h> 1120b00a9115SJed Brown PetscErrorCode PetscNewLog(PetscObject obj,type **result) 1121ad0619ddSBarry Smith 1122ad0619ddSBarry Smith Not Collective 1123ad0619ddSBarry Smith 1124ad0619ddSBarry Smith Input Parameter: 1125b00a9115SJed Brown . obj - object memory is logged to 1126ad0619ddSBarry Smith 1127ad0619ddSBarry Smith Output Parameter: 1128b00a9115SJed Brown . result - memory allocated, sized to match pointer type 1129ad0619ddSBarry Smith 1130ad0619ddSBarry Smith Level: developer 1131ad0619ddSBarry Smith 1132ad0619ddSBarry Smith .seealso: PetscFree(), PetscMalloc(), PetscNew(), PetscLogObjectMemory() 1133ad0619ddSBarry Smith 1134ad0619ddSBarry Smith Concepts: memory allocation 1135ad0619ddSBarry Smith 1136ad0619ddSBarry Smith M*/ 1137d12f57a0SLisandro Dalcin #define PetscNewLog(o,b) (PetscNew((b)) || PetscLogObjectMemory((PetscObject)o,sizeof(**(b)))) 1138d382aafbSBarry Smith 1139d382aafbSBarry Smith /*MC 1140d382aafbSBarry Smith PetscFree - Frees memory 1141d382aafbSBarry Smith 1142eca87e8dSBarry Smith Synopsis: 1143aaa7dc30SBarry Smith #include <petscsys.h> 1144eca87e8dSBarry Smith PetscErrorCode PetscFree(void *memory) 1145eca87e8dSBarry Smith 1146eca87e8dSBarry Smith Not Collective 1147eca87e8dSBarry Smith 1148d382aafbSBarry Smith Input Parameter: 1149d382aafbSBarry Smith . memory - memory to free (the pointer is ALWAYS set to 0 upon sucess) 1150d382aafbSBarry Smith 1151d382aafbSBarry Smith Level: beginner 1152d382aafbSBarry Smith 115349d7da52SJed Brown Notes: 115449d7da52SJed Brown Memory must have been obtained with PetscNew() or PetscMalloc(). 115549d7da52SJed Brown It is safe to call PetscFree() on a NULL pointer. 1156d382aafbSBarry Smith 1157d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscFreeVoid() 1158d382aafbSBarry Smith 1159d382aafbSBarry Smith Concepts: memory allocation 1160d382aafbSBarry Smith 1161d382aafbSBarry Smith M*/ 116249d7da52SJed Brown #define PetscFree(a) ((*PetscTrFree)((void*)(a),__LINE__,PETSC_FUNCTION_NAME,__FILE__) || ((a) = 0,0)) 1163d382aafbSBarry Smith 1164d382aafbSBarry Smith /*MC 1165d382aafbSBarry Smith PetscFreeVoid - Frees memory 1166d382aafbSBarry Smith 1167d382aafbSBarry Smith Synopsis: 1168aaa7dc30SBarry Smith #include <petscsys.h> 1169d382aafbSBarry Smith void PetscFreeVoid(void *memory) 1170d382aafbSBarry Smith 1171eca87e8dSBarry Smith Not Collective 1172eca87e8dSBarry Smith 1173eca87e8dSBarry Smith Input Parameter: 1174eca87e8dSBarry Smith . memory - memory to free 1175eca87e8dSBarry Smith 1176d382aafbSBarry Smith Level: beginner 1177d382aafbSBarry Smith 1178d382aafbSBarry Smith Notes: This is different from PetscFree() in that no error code is returned 1179d382aafbSBarry Smith 1180d382aafbSBarry Smith .seealso: PetscFree(), PetscNew(), PetscMalloc() 1181d382aafbSBarry Smith 1182d382aafbSBarry Smith Concepts: memory allocation 1183d382aafbSBarry Smith 1184d382aafbSBarry Smith M*/ 1185efca3c55SSatish Balay #define PetscFreeVoid(a) ((*PetscTrFree)((a),__LINE__,PETSC_FUNCTION_NAME,__FILE__),(a) = 0) 1186d382aafbSBarry Smith 1187d382aafbSBarry Smith 1188d382aafbSBarry Smith /*MC 1189d382aafbSBarry Smith PetscFree2 - Frees 2 chunks of memory obtained with PetscMalloc2() 1190d382aafbSBarry Smith 1191eca87e8dSBarry Smith Synopsis: 1192aaa7dc30SBarry Smith #include <petscsys.h> 1193eca87e8dSBarry Smith PetscErrorCode PetscFree2(void *memory1,void *memory2) 1194eca87e8dSBarry Smith 1195eca87e8dSBarry Smith Not Collective 1196eca87e8dSBarry Smith 1197d382aafbSBarry Smith Input Parameter: 1198d382aafbSBarry Smith + memory1 - memory to free 1199d382aafbSBarry Smith - memory2 - 2nd memory to free 1200d382aafbSBarry Smith 1201d382aafbSBarry Smith Level: developer 1202d382aafbSBarry Smith 1203d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc2() 1204d382aafbSBarry Smith 1205d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree() 1206d382aafbSBarry Smith 1207d382aafbSBarry Smith Concepts: memory allocation 1208d382aafbSBarry Smith 1209d382aafbSBarry Smith M*/ 1210b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1211d382aafbSBarry Smith #define PetscFree2(m1,m2) (PetscFree(m2) || PetscFree(m1)) 1212d382aafbSBarry Smith #else 1213e38f91f2SMatthew G. Knepley #define PetscFree2(m1,m2) ((m1) ? ((m2)=0,PetscFree(m1)) : ((m1)=0,PetscFree(m2))) 1214d382aafbSBarry Smith #endif 1215d382aafbSBarry Smith 1216d382aafbSBarry Smith /*MC 1217d382aafbSBarry Smith PetscFree3 - Frees 3 chunks of memory obtained with PetscMalloc3() 1218d382aafbSBarry Smith 1219eca87e8dSBarry Smith Synopsis: 1220aaa7dc30SBarry Smith #include <petscsys.h> 1221eca87e8dSBarry Smith PetscErrorCode PetscFree3(void *memory1,void *memory2,void *memory3) 1222eca87e8dSBarry Smith 1223eca87e8dSBarry Smith Not Collective 1224eca87e8dSBarry Smith 1225d382aafbSBarry Smith Input Parameter: 1226d382aafbSBarry Smith + memory1 - memory to free 1227d382aafbSBarry Smith . memory2 - 2nd memory to free 1228d382aafbSBarry Smith - memory3 - 3rd memory to free 1229d382aafbSBarry Smith 1230d382aafbSBarry Smith Level: developer 1231d382aafbSBarry Smith 1232d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc3() 1233d382aafbSBarry Smith 1234d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3() 1235d382aafbSBarry Smith 1236d382aafbSBarry Smith Concepts: memory allocation 1237d382aafbSBarry Smith 1238d382aafbSBarry Smith M*/ 1239b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1240d382aafbSBarry Smith #define PetscFree3(m1,m2,m3) (PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1241d382aafbSBarry Smith #else 1242e38f91f2SMatthew G. Knepley #define PetscFree3(m1,m2,m3) ((m1) ? ((m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m3)=0,(m1)=0,PetscFree(m2)) : ((m2)=0,(m1)=0,PetscFree(m3)))) 1243d382aafbSBarry Smith #endif 1244d382aafbSBarry Smith 1245d382aafbSBarry Smith /*MC 1246d382aafbSBarry Smith PetscFree4 - Frees 4 chunks of memory obtained with PetscMalloc4() 1247d382aafbSBarry Smith 1248eca87e8dSBarry Smith Synopsis: 1249aaa7dc30SBarry Smith #include <petscsys.h> 1250eca87e8dSBarry Smith PetscErrorCode PetscFree4(void *m1,void *m2,void *m3,void *m4) 1251eca87e8dSBarry Smith 1252eca87e8dSBarry Smith Not Collective 1253eca87e8dSBarry Smith 1254d382aafbSBarry Smith Input Parameter: 1255d382aafbSBarry Smith + m1 - memory to free 1256d382aafbSBarry Smith . m2 - 2nd memory to free 1257d382aafbSBarry Smith . m3 - 3rd memory to free 1258d382aafbSBarry Smith - m4 - 4th memory to free 1259d382aafbSBarry Smith 1260d382aafbSBarry Smith Level: developer 1261d382aafbSBarry Smith 1262d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc4() 1263d382aafbSBarry Smith 1264d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4() 1265d382aafbSBarry Smith 1266d382aafbSBarry Smith Concepts: memory allocation 1267d382aafbSBarry Smith 1268d382aafbSBarry Smith M*/ 1269b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1270d382aafbSBarry Smith #define PetscFree4(m1,m2,m3,m4) (PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1271d382aafbSBarry Smith #else 1272e38f91f2SMatthew G. Knepley #define PetscFree4(m1,m2,m3,m4) ((m1) ? ((m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m3)=0,(m2)=0,(m1)=0,PetscFree(m4))))) 1273d382aafbSBarry Smith #endif 1274d382aafbSBarry Smith 1275d382aafbSBarry Smith /*MC 1276d382aafbSBarry Smith PetscFree5 - Frees 5 chunks of memory obtained with PetscMalloc5() 1277d382aafbSBarry Smith 1278eca87e8dSBarry Smith Synopsis: 1279aaa7dc30SBarry Smith #include <petscsys.h> 1280eca87e8dSBarry Smith PetscErrorCode PetscFree5(void *m1,void *m2,void *m3,void *m4,void *m5) 1281eca87e8dSBarry Smith 1282eca87e8dSBarry Smith Not Collective 1283eca87e8dSBarry Smith 1284d382aafbSBarry Smith Input Parameter: 1285d382aafbSBarry Smith + m1 - memory to free 1286d382aafbSBarry Smith . m2 - 2nd memory to free 1287d382aafbSBarry Smith . m3 - 3rd memory to free 1288d382aafbSBarry Smith . m4 - 4th memory to free 1289d382aafbSBarry Smith - m5 - 5th memory to free 1290d382aafbSBarry Smith 1291d382aafbSBarry Smith Level: developer 1292d382aafbSBarry Smith 1293d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc5() 1294d382aafbSBarry Smith 1295d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5() 1296d382aafbSBarry Smith 1297d382aafbSBarry Smith Concepts: memory allocation 1298d382aafbSBarry Smith 1299d382aafbSBarry Smith M*/ 1300b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1301d382aafbSBarry Smith #define PetscFree5(m1,m2,m3,m4,m5) (PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1302d382aafbSBarry Smith #else 1303e38f91f2SMatthew G. Knepley #define PetscFree5(m1,m2,m3,m4,m5) ((m1) ? ((m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : ((m3) ? ((m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : \ 1304e38f91f2SMatthew G. Knepley ((m4) ? ((m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : ((m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)))))) 1305d382aafbSBarry Smith #endif 1306d382aafbSBarry Smith 1307d382aafbSBarry Smith 1308d382aafbSBarry Smith /*MC 1309d382aafbSBarry Smith PetscFree6 - Frees 6 chunks of memory obtained with PetscMalloc6() 1310d382aafbSBarry Smith 1311eca87e8dSBarry Smith Synopsis: 1312aaa7dc30SBarry Smith #include <petscsys.h> 1313eca87e8dSBarry Smith PetscErrorCode PetscFree6(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6) 1314eca87e8dSBarry Smith 1315eca87e8dSBarry Smith Not Collective 1316eca87e8dSBarry Smith 1317d382aafbSBarry Smith Input Parameter: 1318d382aafbSBarry Smith + m1 - memory to free 1319d382aafbSBarry Smith . m2 - 2nd memory to free 1320d382aafbSBarry Smith . m3 - 3rd memory to free 1321d382aafbSBarry Smith . m4 - 4th memory to free 1322d382aafbSBarry Smith . m5 - 5th memory to free 1323d382aafbSBarry Smith - m6 - 6th memory to free 1324d382aafbSBarry Smith 1325d382aafbSBarry Smith 1326d382aafbSBarry Smith Level: developer 1327d382aafbSBarry Smith 1328d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc6() 1329d382aafbSBarry Smith 1330d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6() 1331d382aafbSBarry Smith 1332d382aafbSBarry Smith Concepts: memory allocation 1333d382aafbSBarry Smith 1334d382aafbSBarry Smith M*/ 1335b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1336d382aafbSBarry Smith #define PetscFree6(m1,m2,m3,m4,m5,m6) (PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1337d382aafbSBarry Smith #else 1338e38f91f2SMatthew G. Knepley #define PetscFree6(m1,m2,m3,m4,m5,m6) ((m1) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1339e38f91f2SMatthew G. Knepley ((m3) ? ((m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 1340e38f91f2SMatthew G. Knepley ((m5) ? ((m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6))))))) 1341d382aafbSBarry Smith #endif 1342d382aafbSBarry Smith 1343d382aafbSBarry Smith /*MC 1344d382aafbSBarry Smith PetscFree7 - Frees 7 chunks of memory obtained with PetscMalloc7() 1345d382aafbSBarry Smith 1346eca87e8dSBarry Smith Synopsis: 1347aaa7dc30SBarry Smith #include <petscsys.h> 1348eca87e8dSBarry Smith PetscErrorCode PetscFree7(void *m1,void *m2,void *m3,void *m4,void *m5,void *m6,void *m7) 1349eca87e8dSBarry Smith 1350eca87e8dSBarry Smith Not Collective 1351eca87e8dSBarry Smith 1352d382aafbSBarry Smith Input Parameter: 1353d382aafbSBarry Smith + m1 - memory to free 1354d382aafbSBarry Smith . m2 - 2nd memory to free 1355d382aafbSBarry Smith . m3 - 3rd memory to free 1356d382aafbSBarry Smith . m4 - 4th memory to free 1357d382aafbSBarry Smith . m5 - 5th memory to free 1358d382aafbSBarry Smith . m6 - 6th memory to free 1359d382aafbSBarry Smith - m7 - 7th memory to free 1360d382aafbSBarry Smith 1361d382aafbSBarry Smith 1362d382aafbSBarry Smith Level: developer 1363d382aafbSBarry Smith 1364d382aafbSBarry Smith Notes: Memory must have been obtained with PetscMalloc7() 1365d382aafbSBarry Smith 1366d382aafbSBarry Smith .seealso: PetscNew(), PetscMalloc(), PetscMalloc2(), PetscFree(), PetscMalloc3(), PetscMalloc4(), PetscMalloc5(), PetscMalloc6(), 1367d382aafbSBarry Smith PetscMalloc7() 1368d382aafbSBarry Smith 1369d382aafbSBarry Smith Concepts: memory allocation 1370d382aafbSBarry Smith 1371d382aafbSBarry Smith M*/ 1372b4cc1d85SMatthew G. Knepley #if !defined(PETSC_USE_MALLOC_COALESCED) 1373d382aafbSBarry Smith #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) (PetscFree(m7) || PetscFree(m6) || PetscFree(m5) || PetscFree(m4) || PetscFree(m3) || PetscFree(m2) || PetscFree(m1)) 1374d382aafbSBarry Smith #else 1375e38f91f2SMatthew G. Knepley #define PetscFree7(m1,m2,m3,m4,m5,m6,m7) ((m1) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,PetscFree(m1)) : ((m2) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m3)=0,(m1)=0,PetscFree(m2)) : \ 1376e38f91f2SMatthew G. Knepley ((m3) ? ((m7)=0,(m6)=0,(m5)=0,(m4)=0,(m2)=0,(m1)=0,PetscFree(m3)) : ((m4) ? ((m7)=0,(m6)=0,(m5)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m4)) : \ 137706c0a5e5SMatthew G. Knepley ((m5) ? ((m7)=0,(m6)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m5)) : ((m6) ? ((m7)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m6)) : \ 1378e38f91f2SMatthew G. Knepley ((m6)=0,(m5)=0,(m4)=0,(m3)=0,(m2)=0,(m1)=0,PetscFree(m7)))))))) 1379d382aafbSBarry Smith #endif 1380d382aafbSBarry Smith 1381efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrMalloc)(size_t,int,const char[],const char[],void**); 1382efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode (*PetscTrFree)(void*,int,const char[],const char[]); 1383efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocSet(PetscErrorCode (*)(size_t,int,const char[],const char[],void**),PetscErrorCode (*)(void*,int,const char[],const char[])); 1384014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocClear(void); 1385d382aafbSBarry Smith 1386d382aafbSBarry Smith /* 1387a5057860SBarry Smith PetscLogDouble variables are used to contain double precision numbers 1388a5057860SBarry Smith that are not used in the numerical computations, but rather in logging, 1389a5057860SBarry Smith timing etc. 1390a5057860SBarry Smith */ 1391a5057860SBarry Smith typedef double PetscLogDouble; 1392a5057860SBarry Smith #define MPIU_PETSCLOGDOUBLE MPI_DOUBLE 1393a5057860SBarry Smith 1394a5057860SBarry Smith /* 139566d669d6SBarry Smith Routines for tracing memory corruption/bleeding with default PETSc memory allocation 1396d382aafbSBarry Smith */ 1397014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDump(FILE *); 1398014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDumpLog(FILE *); 1399014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetCurrentUsage(PetscLogDouble *); 1400014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetMaximumUsage(PetscLogDouble *); 1401014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocDebug(PetscBool); 14020acecf5bSBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetDebug(PetscBool*); 1403efca3c55SSatish Balay PETSC_EXTERN PetscErrorCode PetscMallocValidate(int,const char[],const char[]); 1404014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLog(void); 1405574034a9SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocSetDumpLogThreshold(PetscLogDouble); 1406014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMallocGetDumpLog(PetscBool*); 1407d382aafbSBarry Smith 1408d382aafbSBarry Smith /*E 1409d382aafbSBarry Smith PetscDataType - Used for handling different basic data types. 1410d382aafbSBarry Smith 1411d382aafbSBarry Smith Level: beginner 1412d382aafbSBarry Smith 1413d382aafbSBarry Smith Developer comment: It would be nice if we could always just use MPI Datatypes, why can we not? 1414d382aafbSBarry Smith 1415d382aafbSBarry Smith .seealso: PetscBinaryRead(), PetscBinaryWrite(), PetscDataTypeToMPIDataType(), 1416d382aafbSBarry Smith PetscDataTypeGetSize() 1417d382aafbSBarry Smith 1418d382aafbSBarry Smith E*/ 1419d382aafbSBarry Smith typedef enum {PETSC_INT = 0,PETSC_DOUBLE = 1,PETSC_COMPLEX = 2, PETSC_LONG = 3 ,PETSC_SHORT = 4,PETSC_FLOAT = 5, 14207e97c476SMatthew G. Knepley PETSC_CHAR = 6,PETSC_BIT_LOGICAL = 7,PETSC_ENUM = 8,PETSC_BOOL=9, PETSC___FLOAT128 = 10,PETSC_OBJECT = 11, PETSC_FUNCTION = 12, PETSC_STRING = 12} PetscDataType; 14216a6fc655SJed Brown PETSC_EXTERN const char *const PetscDataTypes[]; 1422d382aafbSBarry Smith 1423d382aafbSBarry Smith #if defined(PETSC_USE_COMPLEX) 1424d382aafbSBarry Smith #define PETSC_SCALAR PETSC_COMPLEX 1425d382aafbSBarry Smith #else 1426ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1427d382aafbSBarry Smith #define PETSC_SCALAR PETSC_FLOAT 142859a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 142959a34000SBarry Smith #define PETSC_SCALAR PETSC___FLOAT128 1430d382aafbSBarry Smith #else 1431d382aafbSBarry Smith #define PETSC_SCALAR PETSC_DOUBLE 1432d382aafbSBarry Smith #endif 1433d382aafbSBarry Smith #endif 1434ce63c4c1SBarry Smith #if defined(PETSC_USE_REAL_SINGLE) 1435d382aafbSBarry Smith #define PETSC_REAL PETSC_FLOAT 143659a34000SBarry Smith #elif defined(PETSC_USE_REAL___FLOAT128) 143759a34000SBarry Smith #define PETSC_REAL PETSC___FLOAT128 1438d382aafbSBarry Smith #else 1439d382aafbSBarry Smith #define PETSC_REAL PETSC_DOUBLE 1440d382aafbSBarry Smith #endif 1441d382aafbSBarry Smith #define PETSC_FORTRANADDR PETSC_LONG 1442d382aafbSBarry Smith 1443014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeToMPIDataType(PetscDataType,MPI_Datatype*); 1444014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDataTypeToPetscDataType(MPI_Datatype,PetscDataType*); 1445014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDataTypeGetSize(PetscDataType,size_t*); 14468e4b2d1dSBarry Smith PETSC_EXTERN PetscErrorCode PetscDataTypeFromString(const char*,PetscDataType*,PetscBool*); 1447d382aafbSBarry Smith 1448d382aafbSBarry Smith /* 1449d382aafbSBarry Smith Basic memory and string operations. These are usually simple wrappers 1450d382aafbSBarry Smith around the basic Unix system calls, but a few of them have additional 1451d382aafbSBarry Smith functionality and/or error checking. 1452d382aafbSBarry Smith */ 1453014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBitMemcpy(void*,PetscInt,const void*,PetscInt,PetscInt,PetscDataType); 1454014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemmove(void*,void *,size_t); 1455014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemcmp(const void*,const void*,size_t,PetscBool *); 1456014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrlen(const char[],size_t*); 1457d67fe73bSBarry Smith PETSC_EXTERN PetscErrorCode PetscStrToArray(const char[],char,int*,char ***); 1458014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrToArrayDestroy(int,char **); 1459014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcmp(const char[],const char[],PetscBool *); 1460014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrgrt(const char[],const char[],PetscBool *); 1461014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcasecmp(const char[],const char[],PetscBool *); 1462014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncmp(const char[],const char[],size_t,PetscBool *); 1463014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcpy(char[],const char[]); 1464014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrcat(char[],const char[]); 1465014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncat(char[],const char[],size_t); 1466014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrncpy(char[],const char[],size_t); 1467014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrchr(const char[],char,char *[]); 1468014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrtolower(char[]); 14692f234a98SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrtoupper(char[]); 1470014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrchr(const char[],char,char *[]); 1471014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrstr(const char[],const char[],char *[]); 1472014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrrstr(const char[],const char[],char *[]); 1473014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswith(const char[],const char[],PetscBool*); 14742c9581d2SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrbeginswith(const char[],const char[],PetscBool*); 1475014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrendswithwhich(const char[],const char *const*,PetscInt*); 1476014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrallocpy(const char[],char *[]); 147747340559SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrArrayallocpy(const char *const*,char***); 14786fed8037SJed Brown PETSC_EXTERN PetscErrorCode PetscStrArrayDestroy(char***); 14796991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayallocpy(PetscInt,const char *const*,char***); 14806991f827SBarry Smith PETSC_EXTERN PetscErrorCode PetscStrNArrayDestroy(PetscInt,char***); 1481014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStrreplace(MPI_Comm,const char[],char[],size_t); 1482d382aafbSBarry Smith 1483573b0fb4SBarry Smith PETSC_EXTERN void PetscStrcmpNoError(const char[],const char[],PetscBool *); 1484573b0fb4SBarry Smith 1485d382aafbSBarry Smith /*S 1486d382aafbSBarry Smith PetscToken - 'Token' used for managing tokenizing strings 1487d382aafbSBarry Smith 1488d382aafbSBarry Smith Level: intermediate 1489d382aafbSBarry Smith 1490d382aafbSBarry Smith .seealso: PetscTokenCreate(), PetscTokenFind(), PetscTokenDestroy() 1491d382aafbSBarry Smith S*/ 1492d382aafbSBarry Smith typedef struct _p_PetscToken* PetscToken; 1493d382aafbSBarry Smith 1494014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenCreate(const char[],const char,PetscToken*); 1495014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenFind(PetscToken,char *[]); 1496014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTokenDestroy(PetscToken*); 1497d382aafbSBarry Smith 1498a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEListFind(PetscInt,const char *const*,const char*,PetscInt*,PetscBool*); 1499a53986e1SJed Brown PETSC_EXTERN PetscErrorCode PetscEnumFind(const char *const*,const char*,PetscEnum*,PetscBool*); 1500a53986e1SJed Brown 1501d382aafbSBarry Smith /* 1502d382aafbSBarry Smith These are MPI operations for MPI_Allreduce() etc 1503d382aafbSBarry Smith */ 1504014dd563SJed Brown PETSC_EXTERN MPI_Op PetscMaxSum_Op; 15057c2de775SJed Brown #if (defined(PETSC_HAVE_COMPLEX) && !defined(PETSC_HAVE_MPI_C_DOUBLE_COMPLEX)) || defined(PETSC_USE_REAL___FLOAT128) 1506014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_SUM; 15072414b3c7SJed Brown #else 15082414b3c7SJed Brown #define MPIU_SUM MPI_SUM 15092414b3c7SJed Brown #endif 15102414b3c7SJed Brown #if defined(PETSC_USE_REAL___FLOAT128) 1511014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MAX; 1512014dd563SJed Brown PETSC_EXTERN MPI_Op MPIU_MIN; 1513d9822059SBarry Smith #else 1514d9822059SBarry Smith #define MPIU_MAX MPI_MAX 1515d9822059SBarry Smith #define MPIU_MIN MPI_MIN 1516d9822059SBarry Smith #endif 1517014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMaxSum(MPI_Comm,const PetscInt[],PetscInt*,PetscInt*); 1518d382aafbSBarry Smith 1519014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Send(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1520014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIULong_Recv(void*,PetscInt,MPI_Datatype,PetscMPIInt,PetscMPIInt,MPI_Comm); 1521eb3f98d2SBarry Smith 1522d382aafbSBarry Smith /*S 1523d382aafbSBarry Smith PetscObject - any PETSc object, PetscViewer, Mat, Vec, KSP etc 1524d382aafbSBarry Smith 1525d382aafbSBarry Smith Level: beginner 1526d382aafbSBarry Smith 15272981ebdbSBarry Smith Note: This is the base class from which all PETSc objects are derived from. 1528d382aafbSBarry Smith 15292b26979fSBarry Smith .seealso: PetscObjectDestroy(), PetscObjectView(), PetscObjectGetName(), PetscObjectSetName(), PetscObjectReference(), PetscObjectDereference() 1530d382aafbSBarry Smith S*/ 1531d382aafbSBarry Smith typedef struct _p_PetscObject* PetscObject; 1532d382aafbSBarry Smith 1533270bf2e7SJed Brown /*MC 1534127c8a3bSJed Brown PetscObjectId - unique integer Id for a PetscObject 1535127c8a3bSJed Brown 1536127c8a3bSJed Brown Level: developer 1537127c8a3bSJed Brown 1538127c8a3bSJed Brown Notes: Unlike pointer values, object ids are never reused. 1539127c8a3bSJed Brown 1540127c8a3bSJed Brown .seealso: PetscObjectState, PetscObjectGetId() 1541127c8a3bSJed Brown M*/ 1542127c8a3bSJed Brown typedef Petsc64bitInt PetscObjectId; 1543127c8a3bSJed Brown 1544127c8a3bSJed Brown /*MC 1545270bf2e7SJed Brown PetscObjectState - integer state for a PetscObject 1546270bf2e7SJed Brown 1547270bf2e7SJed Brown Level: developer 1548270bf2e7SJed Brown 1549270bf2e7SJed Brown Notes: 1550270bf2e7SJed Brown Object state is always-increasing and (for objects that track state) can be used to determine if an object has 1551270bf2e7SJed Brown changed since the last time you interacted with it. It is 64-bit so that it will not overflow for a very long time. 1552270bf2e7SJed Brown 15538dcff661SJed Brown .seealso: PetscObjectId, PetscObjectStateGet(), PetscObjectStateIncrease(), PetscObjectStateSet() 1554270bf2e7SJed Brown M*/ 1555270bf2e7SJed Brown typedef Petsc64bitInt PetscObjectState; 1556270bf2e7SJed Brown 1557d382aafbSBarry Smith /*S 1558140e18c1SBarry Smith PetscFunctionList - Linked list of functions, possibly stored in dynamic libraries, accessed 1559d382aafbSBarry Smith by string name 1560d382aafbSBarry Smith 1561d382aafbSBarry Smith Level: advanced 1562d382aafbSBarry Smith 1563140e18c1SBarry Smith .seealso: PetscFunctionListAdd(), PetscFunctionListDestroy(), PetscOpFlist 1564d382aafbSBarry Smith S*/ 1565140e18c1SBarry Smith typedef struct _n_PetscFunctionList *PetscFunctionList; 1566d382aafbSBarry Smith 1567d382aafbSBarry Smith /*E 1568d382aafbSBarry Smith PetscFileMode - Access mode for a file. 1569d382aafbSBarry Smith 1570d382aafbSBarry Smith Level: beginner 1571d382aafbSBarry Smith 15721cc8b206SBarry Smith $ FILE_MODE_READ - open a file at its beginning for reading 15731cc8b206SBarry Smith $ FILE_MODE_WRITE - open a file at its beginning for writing (will create if the file does not exist) 15741cc8b206SBarry Smith $ FILE_MODE_APPEND - open a file at end for writing 15751cc8b206SBarry Smith $ FILE_MODE_UPDATE - open a file for updating, meaning for reading and writing 15761cc8b206SBarry Smith $ FILE_MODE_APPEND_UPDATE - open a file for updating, meaning for reading and writing, at the end 1577d382aafbSBarry Smith 1578d382aafbSBarry Smith .seealso: PetscViewerFileSetMode() 1579d382aafbSBarry Smith E*/ 1580d382aafbSBarry Smith typedef enum {FILE_MODE_READ, FILE_MODE_WRITE, FILE_MODE_APPEND, FILE_MODE_UPDATE, FILE_MODE_APPEND_UPDATE} PetscFileMode; 1581d6a4318aSJed Brown extern const char *const PetscFileModes[]; 1582d6a4318aSJed Brown 1583639ff905SBarry Smith /* 1584639ff905SBarry Smith Defines PETSc error handling. 1585639ff905SBarry Smith */ 1586639ff905SBarry Smith #include <petscerror.h> 1587d382aafbSBarry Smith 15880700a824SBarry Smith #define PETSC_SMALLEST_CLASSID 1211211 1589014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_LARGEST_CLASSID; 1590014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_OBJECT_CLASSID; 1591014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscClassIdRegister(const char[],PetscClassId *); 1592d382aafbSBarry Smith 1593d382aafbSBarry Smith /* 1594d382aafbSBarry Smith Routines that get memory usage information from the OS 1595d382aafbSBarry Smith */ 1596014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetCurrentUsage(PetscLogDouble *); 1597014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemoryGetMaximumUsage(PetscLogDouble *); 1598014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMemorySetGetMaximumUsage(void); 1599b44d5720SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryTrace(const char[]); 1600d382aafbSBarry Smith 1601014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInfoAllow(PetscBool ,const char []); 1602014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSleep(PetscReal); 1603d382aafbSBarry Smith 1604d382aafbSBarry Smith /* 1605d382aafbSBarry Smith Initialization of PETSc 1606d382aafbSBarry Smith */ 1607014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialize(int*,char***,const char[],const char[]); 1608014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoPointers(int,char**,const char[],const char[]); 1609014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeNoArguments(void); 1610014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitialized(PetscBool *); 1611014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalized(PetscBool *); 1612014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFinalize(void); 1613014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscInitializeFortran(void); 1614014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArgs(int*,char ***); 1615014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArguments(char ***); 1616014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFreeArguments(char **); 1617d382aafbSBarry Smith 1618014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscEnd(void); 1619607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscSysInitializePackage(void); 1620d382aafbSBarry Smith 1621014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonInitialize(const char[],const char[]); 1622014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonFinalize(void); 1623014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonPrintError(void); 1624014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPythonMonitorSet(PetscObject,const char[]); 1625d382aafbSBarry Smith 1626d382aafbSBarry Smith /* 1627d382aafbSBarry Smith These are so that in extern C code we can caste function pointers to non-extern C 16282981ebdbSBarry Smith function pointers. Since the regular C++ code expects its function pointers to be C++ 1629d382aafbSBarry Smith */ 1630638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (**PetscVoidStarFunction)(void); 1631638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef void (*PetscVoidFunction)(void); 1632638cfed1SJed Brown PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*PetscErrorCodeFunction)(void); 1633d382aafbSBarry Smith 1634d382aafbSBarry Smith /* 1635d382aafbSBarry Smith Functions that can act on any PETSc object. 1636d382aafbSBarry Smith */ 1637014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDestroy(PetscObject*); 1638014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetComm(PetscObject,MPI_Comm *); 1639014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassId(PetscObject,PetscClassId *); 1640014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetClassName(PetscObject,const char *[]); 1641014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetType(PetscObject,const char []); 1642014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetPrecision(PetscObject,PetscPrecision); 1643014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetType(PetscObject,const char *[]); 1644014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetName(PetscObject,const char[]); 1645014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetName(PetscObject,const char*[]); 1646014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetTabLevel(PetscObject,PetscInt); 1647014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetTabLevel(PetscObject,PetscInt*); 1648014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectIncrementTabLevel(PetscObject,PetscObject,PetscInt); 1649014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectReference(PetscObject); 1650014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetReference(PetscObject,PetscInt*); 1651014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectDereference(PetscObject); 1652014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetNewTag(PetscObject,PetscMPIInt *); 1653014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectCompose(PetscObject,const char[],PetscObject); 1654014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRemoveReference(PetscObject,const char[]); 1655014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQuery(PetscObject,const char[],PetscObject *); 1656bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectComposeFunction_Private(PetscObject,const char[],void (*)(void)); 1657bdf89e91SBarry Smith #define PetscObjectComposeFunction(a,b,d) PetscObjectComposeFunction_Private(a,b,(PetscVoidFunction)(d)) 1658014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetFromOptions(PetscObject); 1659014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetUp(PetscObject); 16600eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSetPrintedOptions(PetscObject); 16610eb63584SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectInheritPrintedOptions(PetscObject,PetscObject); 1662014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscCommGetNewTag(MPI_Comm,PetscMPIInt *); 1663d382aafbSBarry Smith 1664665c2dedSJed Brown #include <petscviewertypes.h> 1665639ff905SBarry Smith #include <petscoptions.h> 1666639ff905SBarry Smith 16670633abcbSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectsListGetGlobalNumbering(MPI_Comm,PetscInt,PetscObject*,PetscInt*,PetscInt*); 16680633abcbSJed Brown 1669639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscMemoryShowUsage(PetscViewer,const char[]); 1670c5e4d11fSDmitry Karpeev PETSC_EXTERN PetscErrorCode PetscMemoryView(PetscViewer,const char[]); 1671dae58748SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectPrintClassNamePrefixType(PetscObject,PetscViewer); 1672639ff905SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectView(PetscObject,PetscViewer); 16730005d66cSJed Brown #define PetscObjectQueryFunction(obj,name,fptr) PetscObjectQueryFunction_Private((obj),(name),(PetscVoidFunction*)(fptr)) 16740005d66cSJed Brown PETSC_EXTERN PetscErrorCode PetscObjectQueryFunction_Private(PetscObject,const char[],void (**)(void)); 1675014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectSetOptionsPrefix(PetscObject,const char[]); 1676014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectAppendOptionsPrefix(PetscObject,const char[]); 1677014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectPrependOptionsPrefix(PetscObject,const char[]); 1678014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectGetOptionsPrefix(PetscObject,const char*[]); 1679014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectChangeTypeName(PetscObject,const char[]); 1680014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroy(PetscObject); 1681014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectRegisterDestroyAll(void); 1682685405a1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectViewFromOptions(PetscObject,PetscObject,const char[]); 1683014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectName(PetscObject); 1684014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompare(PetscObject,const char[],PetscBool *); 1685014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscObjectTypeCompareAny(PetscObject,PetscBool*,const char[],...); 1686014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalize(PetscErrorCode (*)(void)); 1687014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRegisterFinalizeAll(void); 1688d382aafbSBarry Smith 1689e04113cfSBarry Smith #if defined(PETSC_HAVE_SAWS) 16907aab2a10SBarry Smith PETSC_EXTERN PetscErrorCode PetscSAWsBlock(void); 1691e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsViewOff(PetscObject); 1692e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsSetBlock(PetscObject,PetscBool); 1693e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsBlock(PetscObject); 1694e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsGrantAccess(PetscObject); 1695e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectSAWsTakeAccess(PetscObject); 1696e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsGrantAccess(void); 1697e04113cfSBarry Smith PETSC_EXTERN void PetscStackSAWsTakeAccess(void); 1698e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackViewSAWs(void); 1699e04113cfSBarry Smith PETSC_EXTERN PetscErrorCode PetscStackSAWsViewOff(void); 170015681b3cSBarry Smith 1701ec7429eaSBarry Smith #else 17027aab2a10SBarry Smith #define PetscSAWsBlock() 0 1703e04113cfSBarry Smith #define PetscObjectSAWsViewOff(obj) 0 1704e04113cfSBarry Smith #define PetscObjectSAWsSetBlock(obj,flg) 0 1705e04113cfSBarry Smith #define PetscObjectSAWsBlock(obj) 0 1706e04113cfSBarry Smith #define PetscObjectSAWsGrantAccess(obj) 0 1707e04113cfSBarry Smith #define PetscObjectSAWsTakeAccess(obj) 0 1708e04113cfSBarry Smith #define PetscStackViewSAWs() 0 1709e04113cfSBarry Smith #define PetscStackSAWsViewOff() 0 1710e04113cfSBarry Smith #define PetscStackSAWsTakeAccess() 1711e04113cfSBarry Smith #define PetscStackSAWsGrantAccess() 171215681b3cSBarry Smith 1713ec7429eaSBarry Smith #endif 1714b90c6cbeSBarry Smith 17157d5d4d99SBarry Smith typedef void* PetscDLHandle; 1716e4d177b5SBarry Smith typedef enum {PETSC_DL_DECIDE=0,PETSC_DL_NOW=1,PETSC_DL_LOCAL=2} PetscDLMode; 171782b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLOpen(const char[],PetscDLMode,PetscDLHandle *); 171882b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLClose(PetscDLHandle *); 171982b97d80SJed Brown PETSC_EXTERN PetscErrorCode PetscDLSym(PetscDLHandle,const char[],void **); 17207d5d4d99SBarry Smith 17215fe58b6fSBarry Smith #if defined(PETSC_USE_DEBUG) 1722a64a8e02SBarry Smith PETSC_EXTERN PetscErrorCode PetscMallocGetStack(void*,PetscStack**); 17235fe58b6fSBarry Smith #endif 17247eb1d149SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectsDump(FILE*,PetscBool); 1725a64a8e02SBarry Smith 1726d382aafbSBarry Smith /*S 1727140e18c1SBarry Smith PetscObjectList - Linked list of PETSc objects, each accessable by string name 1728d382aafbSBarry Smith 17291d0fab5eSBarry Smith Level: developer 1730d382aafbSBarry Smith 17311d0fab5eSBarry Smith Notes: Used by PetscObjectCompose() and PetscObjectQuery() 17321d0fab5eSBarry Smith 1733140e18c1SBarry Smith .seealso: PetscObjectListAdd(), PetscObjectListDestroy(), PetscObjectListFind(), PetscObjectCompose(), PetscObjectQuery(), PetscFunctionList 1734d382aafbSBarry Smith S*/ 1735140e18c1SBarry Smith typedef struct _n_PetscObjectList *PetscObjectList; 1736d382aafbSBarry Smith 1737140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDestroy(PetscObjectList*); 1738140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListFind(PetscObjectList,const char[],PetscObject*); 1739140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListReverseFind(PetscObjectList,PetscObject,char**,PetscBool*); 1740140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListAdd(PetscObjectList *,const char[],PetscObject); 1741140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListRemoveReference(PetscObjectList *,const char[]); 1742140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscObjectListDuplicate(PetscObjectList,PetscObjectList *); 1743d382aafbSBarry Smith 1744d382aafbSBarry Smith /* 1745503cfb0cSBarry Smith Dynamic library lists. Lists of names of routines in objects or in dynamic 1746d382aafbSBarry Smith link libraries that will be loaded as needed. 1747d382aafbSBarry Smith */ 1748a240a19fSJed Brown 1749a240a19fSJed Brown #define PetscFunctionListAdd(list,name,fptr) PetscFunctionListAdd_Private((list),(name),(PetscVoidFunction)(fptr)) 1750a240a19fSJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListAdd_Private(PetscFunctionList*,const char[],void (*)(void)); 1751140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDestroy(PetscFunctionList*); 17521c9cd337SJed Brown #define PetscFunctionListFind(list,name,fptr) PetscFunctionListFind_Private((list),(name),(PetscVoidFunction*)(fptr)) 17531c9cd337SJed Brown PETSC_EXTERN PetscErrorCode PetscFunctionListFind_Private(PetscFunctionList,const char[],void (**)(void)); 1754140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListPrintTypes(MPI_Comm,FILE*,const char[],const char[],const char[],const char[],PetscFunctionList,const char[]); 1755140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListDuplicate(PetscFunctionList,PetscFunctionList *); 1756140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListView(PetscFunctionList,PetscViewer); 1757140e18c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscFunctionListGet(PetscFunctionList,const char ***,int*); 1758d382aafbSBarry Smith 1759d382aafbSBarry Smith /*S 1760d382aafbSBarry Smith PetscDLLibrary - Linked list of dynamics libraries to search for functions 1761d382aafbSBarry Smith 1762d382aafbSBarry Smith Level: advanced 1763d382aafbSBarry Smith 1764d382aafbSBarry Smith .seealso: PetscDLLibraryOpen() 1765d382aafbSBarry Smith S*/ 1766d382aafbSBarry Smith typedef struct _n_PetscDLLibrary *PetscDLLibrary; 1767014dd563SJed Brown PETSC_EXTERN PetscDLLibrary PetscDLLibrariesLoaded; 1768014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryAppend(MPI_Comm,PetscDLLibrary *,const char[]); 1769014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrepend(MPI_Comm,PetscDLLibrary *,const char[]); 1770014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibrarySym(MPI_Comm,PetscDLLibrary *,const char[],const char[],void **); 1771014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryPrintPath(PetscDLLibrary); 1772014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryRetrieve(MPI_Comm,const char[],char *,size_t,PetscBool *); 1773014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryOpen(MPI_Comm,const char[],PetscDLLibrary *); 1774014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscDLLibraryClose(PetscDLLibrary); 1775d382aafbSBarry Smith 1776d382aafbSBarry Smith /* 1777d382aafbSBarry Smith Useful utility routines 1778d382aafbSBarry Smith */ 1779014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnership(MPI_Comm,PetscInt*,PetscInt*); 1780014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSplitOwnershipBlock(MPI_Comm,PetscInt,PetscInt*,PetscInt*); 1781014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseBegin(MPI_Comm,PetscMPIInt); 1782014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSequentialPhaseEnd(MPI_Comm,PetscMPIInt); 1783014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBarrier(PetscObject); 1784014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMPIDump(FILE*); 1785d382aafbSBarry Smith 1786503cfb0cSBarry Smith /* 1787ace3abfcSBarry Smith PetscNot - negates a logical type value and returns result as a PetscBool 1788503cfb0cSBarry Smith 1789503cfb0cSBarry Smith Notes: This is useful in cases like 1790503cfb0cSBarry Smith $ int *a; 1791ace3abfcSBarry Smith $ PetscBool flag = PetscNot(a) 17921cc8b206SBarry Smith where !a would not return a PetscBool because we cannot provide a cast from int to PetscBool in C. 1793503cfb0cSBarry Smith */ 1794d382aafbSBarry Smith #define PetscNot(a) ((a) ? PETSC_FALSE : PETSC_TRUE) 1795503cfb0cSBarry Smith 1796d382aafbSBarry Smith /*MC 1797d382aafbSBarry Smith PetscHelpPrintf - Prints help messages. 1798d382aafbSBarry Smith 1799d382aafbSBarry Smith Synopsis: 1800aaa7dc30SBarry Smith #include <petscsys.h> 1801d382aafbSBarry Smith PetscErrorCode (*PetscHelpPrintf)(const char format[],...); 1802d382aafbSBarry Smith 1803eca87e8dSBarry Smith Not Collective 1804eca87e8dSBarry Smith 1805d382aafbSBarry Smith Input Parameters: 1806d382aafbSBarry Smith . format - the usual printf() format string 1807d382aafbSBarry Smith 1808d382aafbSBarry Smith Level: developer 1809d382aafbSBarry Smith 1810d382aafbSBarry Smith Fortran Note: 1811d382aafbSBarry Smith This routine is not supported in Fortran. 1812d382aafbSBarry Smith 1813d382aafbSBarry Smith Concepts: help messages^printing 1814d382aafbSBarry Smith Concepts: printing^help messages 1815d382aafbSBarry Smith 1816d382aafbSBarry Smith .seealso: PetscFPrintf(), PetscSynchronizedPrintf(), PetscErrorPrintf() 1817d382aafbSBarry Smith M*/ 1818014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscHelpPrintf)(MPI_Comm,const char[],...); 1819d382aafbSBarry Smith 1820fcfd50ebSBarry Smith /* 1821fcfd50ebSBarry Smith Defines PETSc profiling. 1822fcfd50ebSBarry Smith */ 18232c8e378dSBarry Smith #include <petsclog.h> 1824fcfd50ebSBarry Smith 1825fcfd50ebSBarry Smith /* 1826fcfd50ebSBarry Smith Simple PETSc parallel IO for ASCII printing 1827fcfd50ebSBarry Smith */ 1828014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFixFilename(const char[],char[]); 1829014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFOpen(MPI_Comm,const char[],const char[],FILE**); 1830014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFClose(MPI_Comm,FILE*); 1831014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFPrintf(MPI_Comm,FILE*,const char[],...); 1832014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPrintf(MPI_Comm,const char[],...); 1833014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintf(char*,size_t,const char [],...); 1834014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSNPrintfCount(char*,size_t,const char [],size_t*,...); 1835fcfd50ebSBarry Smith 1836fcfd50ebSBarry Smith /* These are used internally by PETSc ASCII IO routines*/ 1837fcfd50ebSBarry Smith #include <stdarg.h> 1838014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVSNPrintf(char*,size_t,const char[],size_t*,va_list); 1839014dd563SJed Brown PETSC_EXTERN PetscErrorCode (*PetscVFPrintf)(FILE*,const char[],va_list); 1840014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintfDefault(FILE*,const char[],va_list); 1841fcfd50ebSBarry Smith 1842fcfd50ebSBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 1843014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscVFPrintf_Matlab(FILE*,const char[],va_list); 1844fcfd50ebSBarry Smith #endif 1845fcfd50ebSBarry Smith 1846f1d7fe2eSBarry Smith #if defined(PETSC_HAVE_CLOSURES) 1847f1d7fe2eSBarry Smith PETSC_EXTERN PetscErrorCode PetscVFPrintfSetClosure(int (^)(const char*)); 1848f1d7fe2eSBarry Smith #endif 1849f1d7fe2eSBarry Smith 1850014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfDefault(const char [],...); 1851014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscErrorPrintfNone(const char [],...); 1852014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscHelpPrintfDefault(MPI_Comm,const char [],...); 1853d382aafbSBarry Smith 1854d382aafbSBarry Smith #if defined(PETSC_HAVE_POPEN) 1855014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPOpen(MPI_Comm,const char[],const char[],const char[],FILE **); 185696a8e8cbSBarry Smith PETSC_EXTERN PetscErrorCode PetscPClose(MPI_Comm,FILE*,int*); 185774ba8654SBarry Smith PETSC_EXTERN PetscErrorCode PetscPOpenSetMachine(const char[]); 1858d382aafbSBarry Smith #endif 1859d382aafbSBarry Smith 1860014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedPrintf(MPI_Comm,const char[],...); 1861014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFPrintf(MPI_Comm,FILE*,const char[],...); 18620ec8b6e3SBarry Smith PETSC_EXTERN PetscErrorCode PetscSynchronizedFlush(MPI_Comm,FILE*); 1863014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSynchronizedFGets(MPI_Comm,FILE*,size_t,char[]); 1864014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartMatlab(MPI_Comm,const char[],const char[],FILE**); 1865014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStartJava(MPI_Comm,const char[],const char[],FILE**); 1866014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetPetscDir(const char*[]); 1867d382aafbSBarry Smith 1868014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPopUpSelect(MPI_Comm,const char*,const char*,int,const char**,int*); 1869d382aafbSBarry Smith 1870d382aafbSBarry Smith /*S 1871d382aafbSBarry Smith PetscContainer - Simple PETSc object that contains a pointer to any required data 1872d382aafbSBarry Smith 1873d382aafbSBarry Smith Level: advanced 1874d382aafbSBarry Smith 1875d382aafbSBarry Smith .seealso: PetscObject, PetscContainerCreate() 1876d382aafbSBarry Smith S*/ 1877014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_CONTAINER_CLASSID; 1878d382aafbSBarry Smith typedef struct _p_PetscContainer* PetscContainer; 1879014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerGetPointer(PetscContainer,void **); 1880014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetPointer(PetscContainer,void *); 1881014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerDestroy(PetscContainer*); 1882014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerCreate(MPI_Comm,PetscContainer *); 1883014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscContainerSetUserDestroy(PetscContainer, PetscErrorCode (*)(void*)); 1884d382aafbSBarry Smith 1885d382aafbSBarry Smith /* 1886d382aafbSBarry Smith For use in debuggers 1887d382aafbSBarry Smith */ 1888014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalRank; 1889014dd563SJed Brown PETSC_EXTERN PetscMPIInt PetscGlobalSize; 1890014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscIntView(PetscInt,const PetscInt[],PetscViewer); 1891014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRealView(PetscInt,const PetscReal[],PetscViewer); 1892014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscScalarView(PetscInt,const PetscScalar[],PetscViewer); 1893d382aafbSBarry Smith 1894a663daf8SBarry Smith #include <stddef.h> 1895a3aaec0aSJed Brown #include <string.h> /* for memcpy, memset */ 1896d382aafbSBarry Smith #if defined(PETSC_HAVE_STDLIB_H) 1897d382aafbSBarry Smith #include <stdlib.h> 1898d382aafbSBarry Smith #endif 18996c7e564aSBarry Smith 19004a92a979SJed Brown #if defined(PETSC_HAVE_XMMINTRIN_H) && !defined(__CUDACC__) 1901d382aafbSBarry Smith #include <xmmintrin.h> 1902d382aafbSBarry Smith #endif 1903d382aafbSBarry Smith 1904fcfd50ebSBarry Smith #undef __FUNCT__ 1905fcfd50ebSBarry Smith #define __FUNCT__ "PetscMemcpy" 1906d382aafbSBarry Smith /*@C 1907d382aafbSBarry Smith PetscMemcpy - Copies n bytes, beginning at location b, to the space 1908d382aafbSBarry Smith beginning at location a. The two memory regions CANNOT overlap, use 1909d382aafbSBarry Smith PetscMemmove() in that case. 1910d382aafbSBarry Smith 1911d382aafbSBarry Smith Not Collective 1912d382aafbSBarry Smith 1913d382aafbSBarry Smith Input Parameters: 1914d382aafbSBarry Smith + b - pointer to initial memory space 1915d382aafbSBarry Smith - n - length (in bytes) of space to copy 1916d382aafbSBarry Smith 1917d382aafbSBarry Smith Output Parameter: 1918d382aafbSBarry Smith . a - pointer to copy space 1919d382aafbSBarry Smith 1920d382aafbSBarry Smith Level: intermediate 1921d382aafbSBarry Smith 1922d382aafbSBarry Smith Compile Option: 1923d382aafbSBarry Smith PETSC_PREFER_DCOPY_FOR_MEMCPY will cause the BLAS dcopy() routine to be used 1924d382aafbSBarry Smith for memory copies on double precision values. 1925d382aafbSBarry Smith PETSC_PREFER_COPY_FOR_MEMCPY will cause C code to be used 1926d382aafbSBarry Smith for memory copies on double precision values. 1927d382aafbSBarry Smith PETSC_PREFER_FORTRAN_FORMEMCPY will cause Fortran code to be used 1928d382aafbSBarry Smith for memory copies on double precision values. 1929d382aafbSBarry Smith 1930d382aafbSBarry Smith Note: 1931d382aafbSBarry Smith This routine is analogous to memcpy(). 1932d382aafbSBarry Smith 1933503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1934503cfb0cSBarry Smith 1935d382aafbSBarry Smith Concepts: memory^copying 1936d382aafbSBarry Smith Concepts: copying^memory 1937d382aafbSBarry Smith 1938d382aafbSBarry Smith .seealso: PetscMemmove() 1939d382aafbSBarry Smith 1940d382aafbSBarry Smith @*/ 19417087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemcpy(void *a,const void *b,size_t n) 1942d382aafbSBarry Smith { 1943d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1944c5e4d11fSDmitry Karpeev size_t al = (size_t) a,bl = (size_t) b; 1945c5e4d11fSDmitry Karpeev size_t nl = (size_t) n; 1946a7e36092SMatthew G Knepley PetscFunctionBegin; 1947e32f2f54SBarry Smith if (n > 0 && !b) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy from a null pointer"); 1948e32f2f54SBarry Smith if (n > 0 && !a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to copy to a null pointer"); 1949a7e36092SMatthew G Knepley #else 1950d382aafbSBarry Smith PetscFunctionBegin; 1951a7e36092SMatthew G Knepley #endif 1952a47a537aSLisandro Dalcin if (a != b && n > 0) { 1953d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 1954e47d2de2SBarry Smith if ((al > bl && (al - bl) < nl) || (bl - al) < nl) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Memory regions overlap: either use PetscMemmov()\n\ 1955d382aafbSBarry Smith or make sure your copy regions and lengths are correct. \n\ 1956d382aafbSBarry Smith Length (bytes) %ld first address %ld second address %ld",nl,al,bl); 1957d382aafbSBarry Smith #endif 1958d382aafbSBarry Smith #if (defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) || defined(PETSC_PREFER_COPY_FOR_MEMCPY) || defined(PETSC_PREFER_FORTRAN_FORMEMCPY)) 1959c5e4d11fSDmitry Karpeev if (!(a % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 1960d382aafbSBarry Smith size_t len = n/sizeof(PetscScalar); 1961d382aafbSBarry Smith #if defined(PETSC_PREFER_DCOPY_FOR_MEMCPY) 1962c5df96a5SBarry Smith PetscBLASInt one = 1,blen; 1963c5df96a5SBarry Smith PetscErrorCode ierr; 1964c5df96a5SBarry Smith ierr = PetscBLASIntCast(len,&blen);CHKERRQ(ierr); 19658b83055fSJed Brown PetscStackCallBLAS("BLAScopy",BLAScopy_(&blen,(PetscScalar *)b,&one,(PetscScalar *)a,&one)); 1966d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FORMEMCPY) 1967d382aafbSBarry Smith fortrancopy_(&len,(PetscScalar*)b,(PetscScalar*)a); 1968d382aafbSBarry Smith #else 1969d382aafbSBarry Smith size_t i; 1970d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)b, *y = (PetscScalar*)a; 1971d382aafbSBarry Smith for (i=0; i<len; i++) y[i] = x[i]; 1972d382aafbSBarry Smith #endif 1973d382aafbSBarry Smith } else { 1974d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1975d382aafbSBarry Smith } 1976d382aafbSBarry Smith #else 1977d382aafbSBarry Smith memcpy((char*)(a),(char*)(b),n); 1978d382aafbSBarry Smith #endif 1979d382aafbSBarry Smith } 1980d382aafbSBarry Smith PetscFunctionReturn(0); 1981d382aafbSBarry Smith } 1982d382aafbSBarry Smith 1983d382aafbSBarry Smith /*@C 1984d382aafbSBarry Smith PetscMemzero - Zeros the specified memory. 1985d382aafbSBarry Smith 1986d382aafbSBarry Smith Not Collective 1987d382aafbSBarry Smith 1988d382aafbSBarry Smith Input Parameters: 1989d382aafbSBarry Smith + a - pointer to beginning memory location 1990d382aafbSBarry Smith - n - length (in bytes) of memory to initialize 1991d382aafbSBarry Smith 1992d382aafbSBarry Smith Level: intermediate 1993d382aafbSBarry Smith 1994d382aafbSBarry Smith Compile Option: 1995d382aafbSBarry Smith PETSC_PREFER_BZERO - on certain machines (the IBM RS6000) the bzero() routine happens 1996d382aafbSBarry Smith to be faster than the memset() routine. This flag causes the bzero() routine to be used. 1997d382aafbSBarry Smith 1998503cfb0cSBarry Smith Developer Note: this is inlined for fastest performance 1999503cfb0cSBarry Smith 2000d382aafbSBarry Smith Concepts: memory^zeroing 2001d382aafbSBarry Smith Concepts: zeroing^memory 2002d382aafbSBarry Smith 2003d382aafbSBarry Smith .seealso: PetscMemcpy() 2004d382aafbSBarry Smith @*/ 20057087cfbeSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMemzero(void *a,size_t n) 2006d382aafbSBarry Smith { 2007d382aafbSBarry Smith if (n > 0) { 2008d382aafbSBarry Smith #if defined(PETSC_USE_DEBUG) 2009e32f2f54SBarry Smith if (!a) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NULL,"Trying to zero at a null pointer"); 2010d382aafbSBarry Smith #endif 2011d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) 2012d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2013d382aafbSBarry Smith size_t i,len = n/sizeof(PetscScalar); 2014d382aafbSBarry Smith PetscScalar *x = (PetscScalar*)a; 2015d382aafbSBarry Smith for (i=0; i<len; i++) x[i] = 0.0; 2016d382aafbSBarry Smith } else { 2017d382aafbSBarry Smith #elif defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2018d382aafbSBarry Smith if (!(((long) a) % sizeof(PetscScalar)) && !(n % sizeof(PetscScalar))) { 2019d382aafbSBarry Smith PetscInt len = n/sizeof(PetscScalar); 2020d382aafbSBarry Smith fortranzero_(&len,(PetscScalar*)a); 2021d382aafbSBarry Smith } else { 2022d382aafbSBarry Smith #endif 2023d382aafbSBarry Smith #if defined(PETSC_PREFER_BZERO) 2024d382aafbSBarry Smith bzero((char *)a,n); 2025d382aafbSBarry Smith #else 2026d382aafbSBarry Smith memset((char*)a,0,n); 2027d382aafbSBarry Smith #endif 2028d382aafbSBarry Smith #if defined(PETSC_PREFER_ZERO_FOR_MEMZERO) || defined(PETSC_PREFER_FORTRAN_FOR_MEMZERO) 2029d382aafbSBarry Smith } 2030d382aafbSBarry Smith #endif 2031d382aafbSBarry Smith } 2032d382aafbSBarry Smith return 0; 2033d382aafbSBarry Smith } 2034d382aafbSBarry Smith 2035d382aafbSBarry Smith /*MC 2036d382aafbSBarry Smith PetscPrefetchBlock - Prefetches a block of memory 2037d382aafbSBarry Smith 2038eca87e8dSBarry Smith Synopsis: 2039aaa7dc30SBarry Smith #include <petscsys.h> 2040eca87e8dSBarry Smith void PetscPrefetchBlock(const anytype *a,size_t n,int rw,int t) 2041eca87e8dSBarry Smith 2042d382aafbSBarry Smith Not Collective 2043d382aafbSBarry Smith 2044d382aafbSBarry Smith Input Parameters: 2045d382aafbSBarry Smith + a - pointer to first element to fetch (any type but usually PetscInt or PetscScalar) 2046d382aafbSBarry Smith . n - number of elements to fetch 2047d382aafbSBarry Smith . rw - 1 if the memory will be written to, otherwise 0 (ignored by many processors) 204850d8bf02SJed Brown - t - temporal locality (PETSC_PREFETCH_HINT_{NTA,T0,T1,T2}), see note 2049d382aafbSBarry Smith 2050d382aafbSBarry Smith Level: developer 2051d382aafbSBarry Smith 2052d382aafbSBarry Smith Notes: 2053d382aafbSBarry Smith The last two arguments (rw and t) must be compile-time constants. 2054d382aafbSBarry Smith 205550d8bf02SJed Brown Adopting Intel's x86/x86-64 conventions, there are four levels of temporal locality. Not all architectures offer 205650d8bf02SJed Brown equivalent locality hints, but the following macros are always defined to their closest analogue. 205750d8bf02SJed Brown + PETSC_PREFETCH_HINT_NTA - Non-temporal. Prefetches directly to L1, evicts to memory (skips higher level cache unless it was already there when prefetched). 205863cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T0 - Fetch to all levels of cache and evict to the closest level. Use this when the memory will be reused regularly despite necessary eviction from L1. 205963cf1ef0SJed Brown . PETSC_PREFETCH_HINT_T1 - Fetch to level 2 and higher (not L1). 206063cf1ef0SJed Brown - PETSC_PREFETCH_HINT_T2 - Fetch to high-level cache only. (On many systems, T0 and T1 are equivalent.) 2061d382aafbSBarry Smith 2062d382aafbSBarry Smith This function does nothing on architectures that do not support prefetch and never errors (even if passed an invalid 2063d382aafbSBarry Smith address). 2064d382aafbSBarry Smith 2065d382aafbSBarry Smith Concepts: memory 2066d382aafbSBarry Smith M*/ 2067d382aafbSBarry Smith #define PetscPrefetchBlock(a,n,rw,t) do { \ 2068d382aafbSBarry Smith const char *_p = (const char*)(a),*_end = (const char*)((a)+(n)); \ 2069d382aafbSBarry Smith for ( ; _p < _end; _p += PETSC_LEVEL1_DCACHE_LINESIZE) PETSC_Prefetch(_p,(rw),(t)); \ 2070d382aafbSBarry Smith } while (0) 2071d382aafbSBarry Smith 2072d382aafbSBarry Smith /* 2073d382aafbSBarry Smith Determine if some of the kernel computation routines use 2074d382aafbSBarry Smith Fortran (rather than C) for the numerical calculations. On some machines 2075d382aafbSBarry Smith and compilers (like complex numbers) the Fortran version of the routines 2076d382aafbSBarry Smith is faster than the C/C++ versions. The flag --with-fortran-kernels 2077e2e64c6bSBarry Smith should be used with ./configure to turn these on. 2078d382aafbSBarry Smith */ 2079d382aafbSBarry Smith #if defined(PETSC_USE_FORTRAN_KERNELS) 2080d382aafbSBarry Smith 2081d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTCRL) 2082d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTCRL 2083d382aafbSBarry Smith #endif 2084d382aafbSBarry Smith 20855a11e1b2SBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM) 20865a11e1b2SBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJPERM 2087d382aafbSBarry Smith #endif 2088d382aafbSBarry Smith 2089d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTAIJ) 2090d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTAIJ 2091d382aafbSBarry Smith #endif 2092d382aafbSBarry Smith 2093d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ) 2094d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTTRANSPOSEAIJ 2095d382aafbSBarry Smith #endif 2096d382aafbSBarry Smith 2097d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_NORM) 2098d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_NORM 2099d382aafbSBarry Smith #endif 2100d382aafbSBarry Smith 2101d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MAXPY) 2102d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MAXPY 2103d382aafbSBarry Smith #endif 2104d382aafbSBarry Smith 2105d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ) 2106d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEAIJ 2107d382aafbSBarry Smith #endif 2108d382aafbSBarry Smith 2109d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_RELAXAIJ) 2110d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_RELAXAIJ 2111d382aafbSBarry Smith #endif 2112d382aafbSBarry Smith 2113d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ) 2114d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_SOLVEBAIJ 2115d382aafbSBarry Smith #endif 2116d382aafbSBarry Smith 2117d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ) 2118d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MULTADDAIJ 2119d382aafbSBarry Smith #endif 2120d382aafbSBarry Smith 2121d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_MDOT) 2122d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_MDOT 2123d382aafbSBarry Smith #endif 2124d382aafbSBarry Smith 2125d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_XTIMESY) 2126d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_XTIMESY 2127d382aafbSBarry Smith #endif 2128d382aafbSBarry Smith 2129d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_AYPX) 2130d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_AYPX 2131d382aafbSBarry Smith #endif 2132d382aafbSBarry Smith 2133d382aafbSBarry Smith #if !defined(PETSC_USE_FORTRAN_KERNEL_WAXPY) 2134d382aafbSBarry Smith #define PETSC_USE_FORTRAN_KERNEL_WAXPY 2135d382aafbSBarry Smith #endif 2136d382aafbSBarry Smith 2137d382aafbSBarry Smith #endif 2138d382aafbSBarry Smith 2139d382aafbSBarry Smith /* 2140d382aafbSBarry Smith Macros for indicating code that should be compiled with a C interface, 2141d382aafbSBarry Smith rather than a C++ interface. Any routines that are dynamically loaded 2142d382aafbSBarry Smith (such as the PCCreate_XXX() routines) must be wrapped so that the name 2143d382aafbSBarry Smith mangler does not change the functions symbol name. This just hides the 2144d382aafbSBarry Smith ugly extern "C" {} wrappers. 2145d382aafbSBarry Smith */ 2146d382aafbSBarry Smith #if defined(__cplusplus) 2147d382aafbSBarry Smith #define EXTERN_C_BEGIN extern "C" { 2148d382aafbSBarry Smith #define EXTERN_C_END } 2149d382aafbSBarry Smith #else 2150d382aafbSBarry Smith #define EXTERN_C_BEGIN 2151d382aafbSBarry Smith #define EXTERN_C_END 2152d382aafbSBarry Smith #endif 2153d382aafbSBarry Smith 2154d382aafbSBarry Smith /* --------------------------------------------------------------------*/ 2155d382aafbSBarry Smith 2156d382aafbSBarry Smith /*MC 2157d382aafbSBarry Smith MPI_Comm - the basic object used by MPI to determine which processes are involved in a 2158d382aafbSBarry Smith communication 2159d382aafbSBarry Smith 2160d382aafbSBarry Smith Level: beginner 2161d382aafbSBarry Smith 2162d382aafbSBarry Smith Note: This manual page is a place-holder because MPICH does not have a manual page for MPI_Comm 2163d382aafbSBarry Smith 2164d382aafbSBarry Smith .seealso: PETSC_COMM_WORLD, PETSC_COMM_SELF 2165d382aafbSBarry Smith M*/ 2166d382aafbSBarry Smith 2167d382aafbSBarry Smith /*MC 2168d382aafbSBarry Smith PetscScalar - PETSc type that represents either a double precision real number, a double precision 2169d382aafbSBarry Smith complex number, a single precision real number, a long double or an int - if the code is configured 21701cc8b206SBarry Smith with --with-scalar-type=real,complex --with-precision=single,double,__float128 2171d382aafbSBarry Smith 2172d382aafbSBarry Smith Level: beginner 2173d382aafbSBarry Smith 21741cc8b206SBarry Smith .seealso: PetscReal, MPIU_SCALAR, PetscInt, MPIU_REAL 2175d382aafbSBarry Smith M*/ 2176d382aafbSBarry Smith 2177d382aafbSBarry Smith /*MC 21788619c96cSJed Brown PetscComplex - PETSc type that represents a complex number with precision matching that of PetscReal. 21798619c96cSJed Brown 21808619c96cSJed Brown Synopsis: 21818619c96cSJed Brown #include <petscsys.h> 21828619c96cSJed Brown PetscComplex number = 1. + 2.*PETSC_i; 21838619c96cSJed Brown 21848619c96cSJed Brown Level: beginner 21858619c96cSJed Brown 21868619c96cSJed Brown Note: 21878cd53115SBarry Smith Complex numbers are automatically available if PETSc was able to find a working complex implementation 21888619c96cSJed Brown 21898619c96cSJed Brown .seealso: PetscReal, PetscComplex, MPIU_COMPLEX, PetscInt, PETSC_i 21908619c96cSJed Brown M*/ 21918619c96cSJed Brown 21928619c96cSJed Brown /*MC 2193d382aafbSBarry Smith PetscReal - PETSc type that represents a real number version of PetscScalar 2194d382aafbSBarry Smith 2195d382aafbSBarry Smith Level: beginner 2196d382aafbSBarry Smith 21971cc8b206SBarry Smith .seealso: PetscScalar 2198d382aafbSBarry Smith M*/ 2199d382aafbSBarry Smith 2200d382aafbSBarry Smith /*MC 2201d382aafbSBarry Smith MPIU_SCALAR - MPI datatype corresponding to PetscScalar 2202d382aafbSBarry Smith 2203d382aafbSBarry Smith Level: beginner 2204d382aafbSBarry Smith 2205d382aafbSBarry Smith Note: In MPI calls that require an MPI datatype that matches a PetscScalar or array of PetscScalars 2206d382aafbSBarry Smith pass this value 2207d382aafbSBarry Smith 22081cc8b206SBarry Smith .seealso: PetscReal, PetscScalar, MPIU_INT 2209d382aafbSBarry Smith M*/ 2210d382aafbSBarry Smith 2211d382aafbSBarry Smith #if defined(PETSC_HAVE_MPIIO) 2212d382aafbSBarry Smith #if !defined(PETSC_WORDS_BIGENDIAN) 2213014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_write_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2214014dd563SJed Brown PETSC_EXTERN PetscErrorCode MPIU_File_read_all(MPI_File,void*,PetscMPIInt,MPI_Datatype,MPI_Status*); 2215d382aafbSBarry Smith #else 2216d382aafbSBarry Smith #define MPIU_File_write_all(a,b,c,d,e) MPI_File_write_all(a,b,c,d,e) 2217d382aafbSBarry Smith #define MPIU_File_read_all(a,b,c,d,e) MPI_File_read_all(a,b,c,d,e) 2218d382aafbSBarry Smith #endif 2219d382aafbSBarry Smith #endif 2220d382aafbSBarry Smith 2221d382aafbSBarry Smith /* the following petsc_static_inline require petscerror.h */ 2222d382aafbSBarry Smith 2223d382aafbSBarry Smith /* Limit MPI to 32-bits */ 2224d382aafbSBarry Smith #define PETSC_MPI_INT_MAX 2147483647 2225d382aafbSBarry Smith #define PETSC_MPI_INT_MIN -2147483647 2226d382aafbSBarry Smith /* Limit BLAS to 32-bits */ 2227d382aafbSBarry Smith #define PETSC_BLAS_INT_MAX 2147483647 2228d382aafbSBarry Smith #define PETSC_BLAS_INT_MIN -2147483647 2229d382aafbSBarry Smith 2230c5df96a5SBarry Smith #undef __FUNCT__ 2231c5df96a5SBarry Smith #define __FUNCT__ "PetscBLASIntCast" 223261b0d812SBarry Smith /*@C 223361b0d812SBarry Smith PetscBLASIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscBLASInt (which may be 32 bits in size), generates an 223461b0d812SBarry Smith error if the PetscBLASInt is not large enough to hold the number. 223561b0d812SBarry Smith 223661b0d812SBarry Smith Not Collective 223761b0d812SBarry Smith 223861b0d812SBarry Smith Input Parameter: 223961b0d812SBarry Smith . a - the PetscInt value 224061b0d812SBarry Smith 224161b0d812SBarry Smith Output Parameter: 224261b0d812SBarry Smith . b - the resulting PetscBLASInt value 224361b0d812SBarry Smith 224461b0d812SBarry Smith Level: advanced 224561b0d812SBarry Smith 224661b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscMPIIntCast() 224761b0d812SBarry Smith @*/ 2248c5df96a5SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscBLASIntCast(PetscInt a,PetscBLASInt *b) 2249c5df96a5SBarry Smith { 2250c5df96a5SBarry Smith PetscFunctionBegin; 2251ab7117d1SBarry Smith *b = (PetscBLASInt)(a); 2252c5df96a5SBarry Smith #if defined(PETSC_USE_64BIT_INDICES) && !defined(PETSC_HAVE_64BIT_BLAS_INDICES) 2253c5df96a5SBarry Smith if ((a) > PETSC_BLAS_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for BLAS/LAPACK"); 2254c5df96a5SBarry Smith #endif 2255c5df96a5SBarry Smith PetscFunctionReturn(0); 2256c5df96a5SBarry Smith } 2257c5df96a5SBarry Smith 22584dc2109aSBarry Smith #undef __FUNCT__ 22594dc2109aSBarry Smith #define __FUNCT__ "PetscMPIIntCast" 226061b0d812SBarry Smith /*@C 226161b0d812SBarry Smith PetscMPIIntCast - casts a PetscInt (which may be 64 bits in size) to a PetscMPIInt (which may be 32 bits in size), generates an 226261b0d812SBarry Smith error if the PetscMPIInt is not large enough to hold the number. 226361b0d812SBarry Smith 226461b0d812SBarry Smith Not Collective 226561b0d812SBarry Smith 226661b0d812SBarry Smith Input Parameter: 226761b0d812SBarry Smith . a - the PetscInt value 226861b0d812SBarry Smith 226961b0d812SBarry Smith Output Parameter: 227061b0d812SBarry Smith . b - the resulting PetscMPIInt value 227161b0d812SBarry Smith 227261b0d812SBarry Smith Level: advanced 227361b0d812SBarry Smith 227461b0d812SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast() 227561b0d812SBarry Smith @*/ 22764dc2109aSBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscMPIIntCast(PetscInt a,PetscMPIInt *b) 22774dc2109aSBarry Smith { 22784dc2109aSBarry Smith PetscFunctionBegin; 2279ab7117d1SBarry Smith *b = (PetscMPIInt)(a); 22804dc2109aSBarry Smith #if defined(PETSC_USE_64BIT_INDICES) 22814dc2109aSBarry Smith if ((a) > PETSC_MPI_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for MPI"); 22824dc2109aSBarry Smith #endif 22834dc2109aSBarry Smith PetscFunctionReturn(0); 22844dc2109aSBarry Smith } 22854dc2109aSBarry Smith 22862f18eb33SBarry Smith #define PetscIntMult64bit(a,b) ((Petsc64bitInt)(a))*((Petsc64bitInt)(b)) 22872f18eb33SBarry Smith 22882f18eb33SBarry Smith #undef __FUNCT__ 22892f18eb33SBarry Smith #define __FUNCT__ "PetscRealIntMultTruncate" 22902f18eb33SBarry Smith /*@C 22912f18eb33SBarry Smith 22922f18eb33SBarry Smith PetscRealIntMultTruncate - Computes the product of a positive PetscReal and a positive PetscInt and truncates the value to slightly less than the maximal possible value 22932f18eb33SBarry Smith 22942f18eb33SBarry Smith Not Collective 22952f18eb33SBarry Smith 22962f18eb33SBarry Smith Input Parameter: 22972f18eb33SBarry Smith + a - the PetscReal value 22982f18eb33SBarry Smith - b - the second value 22992f18eb33SBarry Smith 23002f18eb33SBarry Smith Output Parameter: 23012f18eb33SBarry Smith . c - the result as a PetscInt value 23022f18eb33SBarry Smith 23032f18eb33SBarry Smith Use PetscIntMult64bit() to compute the product of two PetscInt as a Petsc64bitInt 23042f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two positive PetscInt and truncate to fit a PetscInt 23052f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 23062f18eb33SBarry Smith 23072f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 23082f18eb33SBarry Smith 23092f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23102f18eb33SBarry Smith 23112f18eb33SBarry Smith Level: advanced 23122f18eb33SBarry Smith 23132f18eb33SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 23142f18eb33SBarry Smith @*/ 23152f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscRealIntMultTruncate(PetscReal a,PetscInt b) 23162f18eb33SBarry Smith { 23172f18eb33SBarry Smith Petsc64bitInt r; 23182f18eb33SBarry Smith 23192d4442ebSLisandro Dalcin r = (Petsc64bitInt) (a*(PetscReal)b); 23202f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23212f18eb33SBarry Smith return (PetscInt) r; 23222f18eb33SBarry Smith } 23232f18eb33SBarry Smith 23242f18eb33SBarry Smith #undef __FUNCT__ 23252f18eb33SBarry Smith #define __FUNCT__ "PetscIntMultTruncate" 23262f18eb33SBarry Smith /*@C 23272f18eb33SBarry Smith 23282f18eb33SBarry Smith PetscIntMultTruncate - Computes the product of two positive PetscInt and truncates the value to slightly less than the maximal possible value 23292f18eb33SBarry Smith 23302f18eb33SBarry Smith Not Collective 23312f18eb33SBarry Smith 23322f18eb33SBarry Smith Input Parameter: 23332f18eb33SBarry Smith + a - the PetscInt value 23342f18eb33SBarry Smith - b - the second value 23352f18eb33SBarry Smith 23362f18eb33SBarry Smith Output Parameter: 23372f18eb33SBarry Smith . c - the result as a PetscInt value 23382f18eb33SBarry Smith 23392f18eb33SBarry Smith Use PetscIntMult64bit() to compute the product of two PetscInt as a Petsc64bitInt 23402f18eb33SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 23412f18eb33SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 23422f18eb33SBarry Smith 23432f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 23442f18eb33SBarry Smith 23452f18eb33SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 23462f18eb33SBarry Smith 23472f18eb33SBarry Smith Level: advanced 23482f18eb33SBarry Smith 23492f18eb33SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 23502f18eb33SBarry Smith @*/ 23512f18eb33SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntMultTruncate(PetscInt a,PetscInt b) 23522f18eb33SBarry Smith { 23532f18eb33SBarry Smith Petsc64bitInt r; 23542f18eb33SBarry Smith 23552f18eb33SBarry Smith r = PetscIntMult64bit(a,b); 23562f18eb33SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 23572f18eb33SBarry Smith return (PetscInt) r; 23582f18eb33SBarry Smith } 23592f18eb33SBarry Smith 23602f18eb33SBarry Smith #undef __FUNCT__ 2361f91af8c7SBarry Smith #define __FUNCT__ "PetscIntSumTruncate" 2362f91af8c7SBarry Smith /*@C 2363f91af8c7SBarry Smith 2364f91af8c7SBarry Smith PetscIntSumTruncate - Computes the sum of two positive PetscInt and truncates the value to slightly less than the maximal possible value 2365f91af8c7SBarry Smith 2366f91af8c7SBarry Smith Not Collective 2367f91af8c7SBarry Smith 2368f91af8c7SBarry Smith Input Parameter: 2369f91af8c7SBarry Smith + a - the PetscInt value 2370f91af8c7SBarry Smith - b - the second value 2371f91af8c7SBarry Smith 2372f91af8c7SBarry Smith Output Parameter: 2373f91af8c7SBarry Smith . c - the result as a PetscInt value 2374f91af8c7SBarry Smith 2375f91af8c7SBarry Smith Use PetscIntMult64bit() to compute the product of two PetscInt as a Petsc64bitInt 2376f91af8c7SBarry Smith Use PetscRealIntMultTruncate() to compute the product of a PetscReal and a PetscInt and truncate to fit a PetscInt 2377f91af8c7SBarry Smith Use PetscIntMultError() to compute the product of two PetscInt if you wish to generate an error if the result will not fit in a PetscInt 2378f91af8c7SBarry Smith 2379f91af8c7SBarry Smith This is used where we compute approximate sizes for workspace and need to insure the workspace is index-able. 2380f91af8c7SBarry Smith 2381f91af8c7SBarry Smith Level: advanced 2382f91af8c7SBarry Smith 2383f91af8c7SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 2384f91af8c7SBarry Smith @*/ 2385f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscInt PetscIntSumTruncate(PetscInt a,PetscInt b) 2386f91af8c7SBarry Smith { 2387f91af8c7SBarry Smith Petsc64bitInt r; 2388f91af8c7SBarry Smith 2389f91af8c7SBarry Smith r = ((Petsc64bitInt)a) + ((Petsc64bitInt)b); 2390f91af8c7SBarry Smith if (r > PETSC_MAX_INT - 100) r = PETSC_MAX_INT - 100; 2391f91af8c7SBarry Smith return (PetscInt) r; 2392f91af8c7SBarry Smith } 2393f91af8c7SBarry Smith 2394f91af8c7SBarry Smith #undef __FUNCT__ 23952f18eb33SBarry Smith #define __FUNCT__ "PetscIntMultError" 23962f18eb33SBarry Smith /*@C 23972f18eb33SBarry Smith 23982f18eb33SBarry Smith PetscIntMultError - Computes the product of two positive PetscInt and generates an error with overflow. 23992f18eb33SBarry Smith 24002f18eb33SBarry Smith Not Collective 24012f18eb33SBarry Smith 24022f18eb33SBarry Smith Input Parameter: 24032f18eb33SBarry Smith + a - the PetscInt value 24042f18eb33SBarry Smith - b - the second value 24052f18eb33SBarry Smith 24062f18eb33SBarry Smith Output Parameter:ma 24072f18eb33SBarry Smith . c - the result as a PetscInt value 24082f18eb33SBarry Smith 24092f18eb33SBarry Smith Use PetscIntMult64bit() to compute the product of two 32 bit PetscInt and store in a Petsc64bitInt 24102f18eb33SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 24112f18eb33SBarry Smith 24122f18eb33SBarry Smith Developers Note: We currently assume that PetscInt addition can never overflow, this is obviously wrong but requires many more checks. 24132f18eb33SBarry Smith 24142f18eb33SBarry Smith Level: advanced 24152f18eb33SBarry Smith 24162f18eb33SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 24172f18eb33SBarry Smith @*/ 24182f18eb33SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntMultError(PetscInt a,PetscInt b,PetscInt *result) 24192f18eb33SBarry Smith { 24202f18eb33SBarry Smith Petsc64bitInt r; 24212f18eb33SBarry Smith 24222f18eb33SBarry Smith PetscFunctionBegin; 24232f18eb33SBarry Smith r = PetscIntMult64bit(a,b); 24242f18eb33SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 24252f18eb33SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Product of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 24262f18eb33SBarry Smith #endif 2427f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 2428f91af8c7SBarry Smith PetscFunctionReturn(0); 2429f91af8c7SBarry Smith } 2430f91af8c7SBarry Smith 2431f91af8c7SBarry Smith #undef __FUNCT__ 2432f91af8c7SBarry Smith #define __FUNCT__ "PetscIntSumError" 2433f91af8c7SBarry Smith /*@C 2434f91af8c7SBarry Smith 2435f91af8c7SBarry Smith PetscIntSumError - Computes the product of two positive PetscInt and generates an error with overflow. 2436f91af8c7SBarry Smith 2437f91af8c7SBarry Smith Not Collective 2438f91af8c7SBarry Smith 2439f91af8c7SBarry Smith Input Parameter: 2440f91af8c7SBarry Smith + a - the PetscInt value 2441f91af8c7SBarry Smith - b - the second value 2442f91af8c7SBarry Smith 2443f91af8c7SBarry Smith Output Parameter:ma 2444f91af8c7SBarry Smith . c - the result as a PetscInt value 2445f91af8c7SBarry Smith 2446f91af8c7SBarry Smith Use PetscIntMult64bit() to compute the product of two 32 bit PetscInt and store in a Petsc64bitInt 2447f91af8c7SBarry Smith Use PetscIntMultTruncate() to compute the product of two PetscInt and truncate it to fit in a PetscInt 2448f91af8c7SBarry Smith 2449f91af8c7SBarry Smith Level: advanced 2450f91af8c7SBarry Smith 2451f91af8c7SBarry Smith .seealso: PetscBLASInt, PetscMPIInt, PetscInt, PetscBLASIntCast(), PetscIntMult64() 2452f91af8c7SBarry Smith @*/ 2453f91af8c7SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscIntSumError(PetscInt a,PetscInt b,PetscInt *result) 2454f91af8c7SBarry Smith { 2455f91af8c7SBarry Smith Petsc64bitInt r; 2456f91af8c7SBarry Smith 2457f91af8c7SBarry Smith PetscFunctionBegin; 2458f91af8c7SBarry Smith r = ((Petsc64bitInt)a) + ((Petsc64bitInt)b); 2459f91af8c7SBarry Smith #if !defined(PETSC_USE_64BIT_INDICES) 2460f91af8c7SBarry Smith if (r > PETSC_MAX_INT) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sum of two integer %d %d overflow, you must ./configure PETSc with --with-64-bit-indices for the case you are running",a,b); 2461f91af8c7SBarry Smith #endif 2462f91af8c7SBarry Smith if (result) *result = (PetscInt) r; 24632f18eb33SBarry Smith PetscFunctionReturn(0); 24642f18eb33SBarry Smith } 2465c5df96a5SBarry Smith 2466d382aafbSBarry Smith /* 24672981ebdbSBarry Smith The IBM include files define hz, here we hide it so that it may be used as a regular user variable. 2468d382aafbSBarry Smith */ 2469d382aafbSBarry Smith #if defined(hz) 2470d382aafbSBarry Smith #undef hz 2471d382aafbSBarry Smith #endif 2472d382aafbSBarry Smith 2473d382aafbSBarry Smith /* For arrays that contain filenames or paths */ 2474d382aafbSBarry Smith 2475d382aafbSBarry Smith 2476d382aafbSBarry Smith #if defined(PETSC_HAVE_LIMITS_H) 2477d382aafbSBarry Smith #include <limits.h> 2478d382aafbSBarry Smith #endif 2479d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_PARAM_H) 2480d382aafbSBarry Smith #include <sys/param.h> 2481d382aafbSBarry Smith #endif 2482d382aafbSBarry Smith #if defined(PETSC_HAVE_SYS_TYPES_H) 2483d382aafbSBarry Smith #include <sys/types.h> 2484d382aafbSBarry Smith #endif 2485d382aafbSBarry Smith #if defined(MAXPATHLEN) 2486d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAXPATHLEN 2487d382aafbSBarry Smith #elif defined(MAX_PATH) 2488d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN MAX_PATH 2489d382aafbSBarry Smith #elif defined(_MAX_PATH) 2490d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN _MAX_PATH 2491d382aafbSBarry Smith #else 2492d382aafbSBarry Smith # define PETSC_MAX_PATH_LEN 4096 2493d382aafbSBarry Smith #endif 2494d382aafbSBarry Smith 2495d382aafbSBarry Smith /*MC 2496d382aafbSBarry Smith 2497d382aafbSBarry Smith UsingFortran - Fortran can be used with PETSc in four distinct approaches 2498d382aafbSBarry Smith 2499d382aafbSBarry Smith $ 1) classic Fortran 77 style 2500af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" to work with material from the XXX component of PETSc 2501d382aafbSBarry Smith $ XXX variablename 2502d382aafbSBarry Smith $ You cannot use this approach if you wish to use the Fortran 90 specific PETSc routines 2503d382aafbSBarry Smith $ which end in F90; such as VecGetArrayF90() 2504d382aafbSBarry Smith $ 2505d382aafbSBarry Smith $ 2) classic Fortran 90 style 2506af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h" 2507af0996ceSBarry Smith $#include "petsc/finclude/petscXXX.h90" to work with material from the XXX component of PETSc 2508d382aafbSBarry Smith $ XXX variablename 2509d382aafbSBarry Smith $ 2510d382aafbSBarry Smith $ 3) Using Fortran modules 2511af0996ceSBarry Smith $#include "petsc/finclude/petscXXXdef.h" 2512d382aafbSBarry Smith $ use petscXXXX 2513d382aafbSBarry Smith $ XXX variablename 2514d382aafbSBarry Smith $ 2515d382aafbSBarry Smith $ 4) Use Fortran modules and Fortran data types for PETSc types 2516af0996ceSBarry Smith $#include "petsc/finclude/petscXXXdef.h" 2517d382aafbSBarry Smith $ use petscXXXX 2518d382aafbSBarry Smith $ type(XXX) variablename 2519e2e64c6bSBarry Smith $ To use this approach you must ./configure PETSc with the additional 2520d382aafbSBarry Smith $ option --with-fortran-datatypes You cannot use the type(XXX) declaration approach without using Fortran modules 2521d382aafbSBarry Smith 2522d382aafbSBarry Smith Finally if you absolutely do not want to use any #include you can use either 2523d382aafbSBarry Smith 2524d382aafbSBarry Smith $ 3a) skip the #include BUT you cannot use any PETSc data type names like Vec, Mat, PetscInt, PetscErrorCode etc 2525d382aafbSBarry Smith $ and you must declare the variables as integer, for example 2526d382aafbSBarry Smith $ integer variablename 2527d382aafbSBarry Smith $ 2528d382aafbSBarry Smith $ 4a) skip the #include, you use the object types like type(Vec) type(Mat) but cannot use the data type 2529d382aafbSBarry Smith $ names like PetscErrorCode, PetscInt etc. again for those you must use integer 2530d382aafbSBarry Smith 2531d382aafbSBarry Smith We recommend either 2 or 3. Approaches 2 and 3 provide type checking for most PETSc function calls; 4 has type checking 2532d382aafbSBarry Smith for only a few PETSc functions. 2533d382aafbSBarry Smith 2534d382aafbSBarry Smith Fortran type checking with interfaces is strick, this means you cannot pass a scalar value when an array value 2535d382aafbSBarry Smith is expected (even though it is legal Fortran). For example when setting a single value in a matrix with MatSetValues() 2536d382aafbSBarry Smith you cannot have something like 2537d382aafbSBarry Smith $ PetscInt row,col 2538d382aafbSBarry Smith $ PetscScalar val 2539d382aafbSBarry Smith $ ... 2540d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2541d382aafbSBarry Smith You must instead have 2542d382aafbSBarry Smith $ PetscInt row(1),col(1) 2543d382aafbSBarry Smith $ PetscScalar val(1) 2544d382aafbSBarry Smith $ ... 2545d382aafbSBarry Smith $ call MatSetValues(mat,1,row,1,col,val,INSERT_VALUES,ierr) 2546d382aafbSBarry Smith 2547d382aafbSBarry Smith 2548d382aafbSBarry Smith See the example src/vec/vec/examples/tutorials/ex20f90.F90 for an example that can use all four approaches 2549d382aafbSBarry Smith 2550af0996ceSBarry Smith Developer Notes: The petsc/finclude/petscXXXdef.h contain all the #defines (would be typedefs in C code) these 2551af0996ceSBarry Smith automatically include their predecessors; for example petsc/finclude/petscvecdef.h includes petsc/finclude/petscisdef.h 2552d382aafbSBarry Smith 2553af0996ceSBarry Smith The petsc/finclude/petscXXXX.h contain all the parameter statements for that package. These automatically include 2554af0996ceSBarry Smith their petsc/finclude/petscXXXdef.h file but DO NOT automatically include their predecessors; for example 2555af0996ceSBarry Smith petsc/finclude/petscvec.h does NOT automatically include petsc/finclude/petscis.h 2556d382aafbSBarry Smith 2557af0996ceSBarry Smith The petsc/finclude/ftn-custom/petscXXXdef.h90 are not intended to be used directly in code, they define the 2558e2e64c6bSBarry Smith Fortran data type type(XXX) (for example type(Vec)) when PETSc is ./configure with the --with-fortran-datatypes option. 2559d382aafbSBarry Smith 2560af0996ceSBarry Smith The petsc/finclude/ftn-custom/petscXXX.h90 (not included directly by code) contain interface definitions for 2561d382aafbSBarry Smith the PETSc Fortran stubs that have different bindings then their C version (for example VecGetArrayF90). 2562d382aafbSBarry Smith 2563af0996ceSBarry Smith The petsc/finclude/ftn-auto/petscXXX.h90 (not included directly by code) contain interface definitions generated 2564d382aafbSBarry Smith automatically by "make allfortranstubs". 2565d382aafbSBarry Smith 2566af0996ceSBarry Smith The petsc/finclude/petscXXX.h90 includes the custom petsc/finclude/ftn-custom/petscXXX.h90 and if ./configure 2567af0996ceSBarry Smith was run with --with-fortran-interfaces it also includes the petsc/finclude/ftn-auto/petscXXX.h90 These DO NOT automatically 2568d382aafbSBarry Smith include their predecessors 2569d382aafbSBarry Smith 2570d382aafbSBarry Smith Level: beginner 2571d382aafbSBarry Smith 2572d382aafbSBarry Smith M*/ 2573d382aafbSBarry Smith 2574014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetArchType(char[],size_t); 2575014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHostName(char[],size_t); 2576014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetUserName(char[],size_t); 2577014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetProgramName(char[],size_t); 2578014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetProgramName(const char[]); 2579014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDate(char[],size_t); 258027710113SBarry Smith PETSC_EXTERN PetscErrorCode PetscGetVersion(char[], size_t); 2581d382aafbSBarry Smith 2582014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortInt(PetscInt,PetscInt[]); 2583014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsInt(PetscInt*,PetscInt[]); 258460e03357SMatthew G Knepley PETSC_EXTERN PetscErrorCode PetscFindInt(PetscInt, PetscInt, const PetscInt[], PetscInt*); 2585014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithPermutation(PetscInt,const PetscInt[],PetscInt[]); 2586014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortStrWithPermutation(PetscInt,const char*[],PetscInt[]); 2587014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArray(PetscInt,PetscInt[],PetscInt[]); 2588014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithArrayPair(PetscInt,PetscInt*,PetscInt*,PetscInt*); 258917d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortMPIInt(PetscInt,PetscMPIInt[]); 259017d7d925SStefano Zampini PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsMPIInt(PetscInt*,PetscMPIInt[]); 2591014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortMPIIntWithArray(PetscMPIInt,PetscMPIInt[],PetscMPIInt[]); 2592014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortIntWithScalarArray(PetscInt,PetscInt[],PetscScalar[]); 259317df18f2SToby Isaac PETSC_EXTERN PetscErrorCode PetscSortIntWithDataArray(PetscInt,PetscInt[],void*,size_t,void*); 2594014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortReal(PetscInt,PetscReal[]); 2595014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortRealWithPermutation(PetscInt,const PetscReal[],PetscInt[]); 2596745b41b2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscSortRemoveDupsReal(PetscInt*,PetscReal[]); 2597014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplit(PetscInt,PetscInt,PetscScalar[],PetscInt[]); 2598014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSortSplitReal(PetscInt,PetscInt,PetscReal[],PetscInt[]); 2599014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscProcessTree(PetscInt,const PetscBool [],const PetscInt[],PetscInt*,PetscInt**,PetscInt**,PetscInt**,PetscInt**); 2600014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeIntArrayPair(PetscInt,const PetscInt*,const PetscInt*,PetscInt,const PetscInt*,const PetscInt*,PetscInt*,PetscInt**,PetscInt**); 260121e72a00SBarry Smith PETSC_EXTERN PetscErrorCode PetscMergeIntArray(PetscInt,const PetscInt*,PetscInt,const PetscInt*,PetscInt*,PetscInt**); 2602e498c390SJed Brown PETSC_EXTERN PetscErrorCode PetscMergeMPIIntArray(PetscInt,const PetscMPIInt[],PetscInt,const PetscMPIInt[],PetscInt*,PetscMPIInt**); 2603d382aafbSBarry Smith 2604014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDisplay(void); 2605014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetDisplay(char[],size_t); 2606d382aafbSBarry Smith 260776bdecfbSBarry Smith /*J 2608d382aafbSBarry Smith PetscRandomType - String with the name of a PETSc randomizer 2609d382aafbSBarry Smith 2610d382aafbSBarry Smith Level: beginner 2611d382aafbSBarry Smith 2612e2e64c6bSBarry Smith Notes: to use the SPRNG you must have ./configure PETSc 2613d382aafbSBarry Smith with the option --download-sprng 2614d382aafbSBarry Smith 26158f6c3df8SBarry Smith .seealso: PetscRandomSetType(), PetscRandom, PetscRandomCreate() 261676bdecfbSBarry Smith J*/ 261719fd82e9SBarry Smith typedef const char* PetscRandomType; 2618d382aafbSBarry Smith #define PETSCRAND "rand" 2619d382aafbSBarry Smith #define PETSCRAND48 "rand48" 2620d382aafbSBarry Smith #define PETSCSPRNG "sprng" 2621c5e4d11fSDmitry Karpeev #define PETSCRANDER48 "rander48" 2622d382aafbSBarry Smith 2623d382aafbSBarry Smith /* Logging support */ 2624014dd563SJed Brown PETSC_EXTERN PetscClassId PETSC_RANDOM_CLASSID; 2625d382aafbSBarry Smith 2626607a6623SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomInitializePackage(void); 2627d382aafbSBarry Smith 2628d382aafbSBarry Smith /*S 2629d382aafbSBarry Smith PetscRandom - Abstract PETSc object that manages generating random numbers 2630d382aafbSBarry Smith 2631d382aafbSBarry Smith Level: intermediate 2632d382aafbSBarry Smith 2633d382aafbSBarry Smith Concepts: random numbers 2634d382aafbSBarry Smith 2635d382aafbSBarry Smith .seealso: PetscRandomCreate(), PetscRandomGetValue(), PetscRandomType 2636d382aafbSBarry Smith S*/ 2637d382aafbSBarry Smith typedef struct _p_PetscRandom* PetscRandom; 2638d382aafbSBarry Smith 2639d382aafbSBarry Smith /* Dynamic creation and loading functions */ 2640140e18c1SBarry Smith PETSC_EXTERN PetscFunctionList PetscRandomList; 2641d382aafbSBarry Smith 2642bdf89e91SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomRegister(const char[],PetscErrorCode (*)(PetscRandom)); 264319fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomSetType(PetscRandom, PetscRandomType); 2644014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetFromOptions(PetscRandom); 264519fd82e9SBarry Smith PETSC_EXTERN PetscErrorCode PetscRandomGetType(PetscRandom, PetscRandomType*); 2646685405a1SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscRandomViewFromOptions(PetscRandom A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);} 2647014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomView(PetscRandom,PetscViewer); 2648d382aafbSBarry Smith 2649014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomCreate(MPI_Comm,PetscRandom*); 2650014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValue(PetscRandom,PetscScalar*); 2651014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetValueReal(PetscRandom,PetscReal*); 2652014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetInterval(PetscRandom,PetscScalar*,PetscScalar*); 2653014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetInterval(PetscRandom,PetscScalar,PetscScalar); 2654014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSetSeed(PetscRandom,unsigned long); 2655014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomGetSeed(PetscRandom,unsigned long *); 2656014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomSeed(PetscRandom); 2657014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscRandomDestroy(PetscRandom*); 2658d382aafbSBarry Smith 2659014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetFullPath(const char[],char[],size_t); 2660014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRelativePath(const char[],char[],size_t); 2661014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetWorkingDirectory(char[],size_t); 2662014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetRealPath(const char[],char[]); 2663014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetHomeDirectory(char[],size_t); 2664014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestFile(const char[],char,PetscBool *); 2665014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscTestDirectory(const char[],char,PetscBool *); 266697540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscMkdir(const char[]); 266797540f07SSatish Balay PETSC_EXTERN PetscErrorCode PetscRMTree(const char[]); 2668d382aafbSBarry Smith 2669014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryRead(int,void*,PetscInt,PetscDataType); 2670014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedRead(MPI_Comm,int,void*,PetscInt,PetscDataType); 2671014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedWrite(MPI_Comm,int,void*,PetscInt,PetscDataType,PetscBool ); 2672014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryWrite(int,void*,PetscInt,PetscDataType,PetscBool ); 2673014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryOpen(const char[],PetscFileMode,int *); 2674014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinaryClose(int); 2675014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedTmp(MPI_Comm,PetscBool *); 2676014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSharedWorkingDirectory(MPI_Comm,PetscBool *); 2677014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGetTmp(MPI_Comm,char[],size_t); 2678014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscFileRetrieve(MPI_Comm,const char[],char[],size_t,PetscBool *); 2679014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscLs(MPI_Comm,const char[],char[],size_t,PetscBool *); 2680e2fc02c1SBarry Smith PETSC_EXTERN PetscErrorCode PetscOpenSocket(const char[],int,int*); 2681d382aafbSBarry Smith 2682d382aafbSBarry Smith /* 2683d382aafbSBarry Smith In binary files variables are stored using the following lengths, 2684d382aafbSBarry Smith regardless of how they are stored in memory on any one particular 2685d382aafbSBarry Smith machine. Use these rather then sizeof() in computing sizes for 2686d382aafbSBarry Smith PetscBinarySeek(). 2687d382aafbSBarry Smith */ 2688d382aafbSBarry Smith #define PETSC_BINARY_INT_SIZE (32/8) 2689d382aafbSBarry Smith #define PETSC_BINARY_FLOAT_SIZE (32/8) 2690d382aafbSBarry Smith #define PETSC_BINARY_CHAR_SIZE (8/8) 2691d382aafbSBarry Smith #define PETSC_BINARY_SHORT_SIZE (16/8) 2692d382aafbSBarry Smith #define PETSC_BINARY_DOUBLE_SIZE (64/8) 2693d382aafbSBarry Smith #define PETSC_BINARY_SCALAR_SIZE sizeof(PetscScalar) 2694d382aafbSBarry Smith 2695d382aafbSBarry Smith /*E 2696d382aafbSBarry Smith PetscBinarySeekType - argument to PetscBinarySeek() 2697d382aafbSBarry Smith 2698d382aafbSBarry Smith Level: advanced 2699d382aafbSBarry Smith 2700d382aafbSBarry Smith .seealso: PetscBinarySeek(), PetscBinarySynchronizedSeek() 2701d382aafbSBarry Smith E*/ 2702d382aafbSBarry Smith typedef enum {PETSC_BINARY_SEEK_SET = 0,PETSC_BINARY_SEEK_CUR = 1,PETSC_BINARY_SEEK_END = 2} PetscBinarySeekType; 2703014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySeek(int,off_t,PetscBinarySeekType,off_t*); 2704014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscBinarySynchronizedSeek(MPI_Comm,int,off_t,PetscBinarySeekType,off_t*); 2705014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscByteSwap(void *,PetscDataType,PetscInt); 2706d382aafbSBarry Smith 2707014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugTerminal(const char[]); 2708014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebugger(const char[],PetscBool ); 2709014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDefaultDebugger(void); 2710014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSetDebuggerFromString(const char*); 2711014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscAttachDebugger(void); 2712014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscStopForDebugger(void); 2713d382aafbSBarry Smith 2714014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherNumberOfMessages(MPI_Comm,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt*); 2715014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**); 2716014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscGatherMessageLengths2(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscMPIInt**,PetscMPIInt**,PetscMPIInt**); 2717014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvInt(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscInt***,MPI_Request**); 2718014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscPostIrecvScalar(MPI_Comm,PetscMPIInt,PetscMPIInt,const PetscMPIInt[],const PetscMPIInt[],PetscScalar***,MPI_Request**); 2719cf4b5b4fSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSided(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt*,const void*,PetscMPIInt*,PetscMPIInt**,void*) 2720cf4b5b4fSJed Brown PetscAttrMPIPointerWithType(6,3); 2721d815da10SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedF(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 2722d815da10SJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 2723d815da10SJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 2724d815da10SJed Brown PetscAttrMPIPointerWithType(6,3); 27256afbe7ddSJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedFReq(MPI_Comm,PetscMPIInt,MPI_Datatype,PetscMPIInt,const PetscMPIInt[],const void*,PetscMPIInt*,PetscMPIInt**,void*,PetscMPIInt, 27266afbe7ddSJed Brown MPI_Request**,MPI_Request**, 27276afbe7ddSJed Brown PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*), 27286afbe7ddSJed Brown PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx) 27296afbe7ddSJed Brown PetscAttrMPIPointerWithType(6,3); 2730d382aafbSBarry Smith 27316145cd65SJed Brown /*E 27326145cd65SJed Brown PetscBuildTwoSidedType - algorithm for setting up two-sided communication 27336145cd65SJed Brown 27346145cd65SJed Brown $ PETSC_BUILDTWOSIDED_ALLREDUCE - classical algorithm using an MPI_Allreduce with 27356145cd65SJed Brown $ a buffer of length equal to the communicator size. Not memory-scalable due to 27366145cd65SJed Brown $ the large reduction size. Requires only MPI-1. 27376145cd65SJed Brown $ PETSC_BUILDTWOSIDED_IBARRIER - nonblocking algorithm based on MPI_Issend and MPI_Ibarrier. 27386145cd65SJed Brown $ Proved communication-optimal in Hoefler, Siebert, and Lumsdaine (2010). Requires MPI-3. 27391654bf6bSJed Brown $ PETSC_BUILDTWOSIDED_REDSCATTER - similar to above, but use more optimized function 27401654bf6bSJed Brown $ that only communicates the part of the reduction that is necessary. Requires MPI-2. 27416145cd65SJed Brown 27426145cd65SJed Brown Level: developer 27436145cd65SJed Brown 27446145cd65SJed Brown .seealso: PetscCommBuildTwoSided(), PetscCommBuildTwoSidedSetType(), PetscCommBuildTwoSidedGetType() 27456145cd65SJed Brown E*/ 27466145cd65SJed Brown typedef enum { 27476145cd65SJed Brown PETSC_BUILDTWOSIDED_NOTSET = -1, 27486145cd65SJed Brown PETSC_BUILDTWOSIDED_ALLREDUCE = 0, 27491654bf6bSJed Brown PETSC_BUILDTWOSIDED_IBARRIER = 1, 275012af867fSJed Brown PETSC_BUILDTWOSIDED_REDSCATTER = 2 27516145cd65SJed Brown /* Updates here must be accompanied by updates in finclude/petscsys.h and the string array in mpits.c */ 27526145cd65SJed Brown } PetscBuildTwoSidedType; 27536145cd65SJed Brown PETSC_EXTERN const char *const PetscBuildTwoSidedTypes[]; 27546145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedSetType(MPI_Comm,PetscBuildTwoSidedType); 27556145cd65SJed Brown PETSC_EXTERN PetscErrorCode PetscCommBuildTwoSidedGetType(MPI_Comm,PetscBuildTwoSidedType*); 27566145cd65SJed Brown 2757014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSSEIsEnabled(MPI_Comm,PetscBool *,PetscBool *); 2758d382aafbSBarry Smith 2759d382aafbSBarry Smith /*E 2760d382aafbSBarry Smith InsertMode - Whether entries are inserted or added into vectors or matrices 2761d382aafbSBarry Smith 2762d382aafbSBarry Smith Level: beginner 2763d382aafbSBarry Smith 2764d382aafbSBarry Smith .seealso: VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2765d382aafbSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), 2766d382aafbSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd() 2767d382aafbSBarry Smith E*/ 27686fbadbe2SMatthew G Knepley typedef enum {NOT_SET_VALUES, INSERT_VALUES, ADD_VALUES, MAX_VALUES, INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_BC_VALUES, ADD_BC_VALUES} InsertMode; 2769d382aafbSBarry Smith 2770d382aafbSBarry Smith /*MC 2771d382aafbSBarry Smith INSERT_VALUES - Put a value into a vector or matrix, overwrites any previous value 2772d382aafbSBarry Smith 2773d382aafbSBarry Smith Level: beginner 2774d382aafbSBarry Smith 2775d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2776eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), ADD_VALUES, 2777eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2778d382aafbSBarry Smith 2779d382aafbSBarry Smith M*/ 2780d382aafbSBarry Smith 2781d382aafbSBarry Smith /*MC 2782d382aafbSBarry Smith ADD_VALUES - Adds a value into a vector or matrix, if there previously was no value, just puts the 2783d382aafbSBarry Smith value into that location 2784d382aafbSBarry Smith 2785d382aafbSBarry Smith Level: beginner 2786d382aafbSBarry Smith 2787d382aafbSBarry Smith .seealso: InsertMode, VecSetValues(), MatSetValues(), VecSetValue(), VecSetValuesBlocked(), 2788eca87e8dSBarry Smith VecSetValuesLocal(), VecSetValuesBlockedLocal(), MatSetValuesBlocked(), INSERT_VALUES, 2789eca87e8dSBarry Smith MatSetValuesBlockedLocal(), MatSetValuesLocal(), VecScatterBegin(), VecScatterEnd(), MAX_VALUES 2790d382aafbSBarry Smith 2791d382aafbSBarry Smith M*/ 2792d382aafbSBarry Smith 2793d382aafbSBarry Smith /*MC 2794d382aafbSBarry Smith MAX_VALUES - Puts the maximum of the scattered/gathered value and the current value into each location 2795d382aafbSBarry Smith 2796d382aafbSBarry Smith Level: beginner 2797d382aafbSBarry Smith 2798d382aafbSBarry Smith .seealso: InsertMode, VecScatterBegin(), VecScatterEnd(), ADD_VALUES, INSERT_VALUES 2799d382aafbSBarry Smith 2800d382aafbSBarry Smith M*/ 2801d382aafbSBarry Smith 2802ce94432eSBarry Smith PETSC_EXTERN MPI_Comm PetscObjectComm(PetscObject); 2803ce94432eSBarry Smith 280445487dadSJed Brown typedef enum {PETSC_SUBCOMM_GENERAL=0,PETSC_SUBCOMM_CONTIGUOUS=1,PETSC_SUBCOMM_INTERLACED=2} PetscSubcommType; 280545487dadSJed Brown PETSC_EXTERN const char *const PetscSubcommTypes[]; 280645487dadSJed Brown 2807d382aafbSBarry Smith /*S 2808306c2d5bSBarry Smith PetscSubcomm - A decomposition of an MPI communicator into subcommunicators 2809306c2d5bSBarry Smith 2810306c2d5bSBarry Smith Notes: After a call to PetscSubcommSetType(), PetscSubcommSetTypeGeneral(), or PetscSubcommSetFromOptions() one may call 2811306c2d5bSBarry Smith $ PetscSubcommChild() returns the associated subcommunicator on this process 281236be1a5eSBarry Smith $ PetscSubcommContiguousParent() returns a parent communitor but with all child of the same subcommunicator having contiquous rank 2813306c2d5bSBarry Smith 2814306c2d5bSBarry Smith Sample Usage: 2815306c2d5bSBarry Smith PetscSubcommCreate() 2816306c2d5bSBarry Smith PetscSubcommSetNumber() 2817306c2d5bSBarry Smith PetscSubcommSetType(PETSC_SUBCOMM_INTERLACED); 2818306c2d5bSBarry Smith ccomm = PetscSubcommChild() 2819306c2d5bSBarry Smith PetscSubcommDestroy() 2820d382aafbSBarry Smith 2821d382aafbSBarry Smith Level: advanced 2822d382aafbSBarry Smith 2823d382aafbSBarry Smith Concepts: communicator, create 2824306c2d5bSBarry Smith 2825306c2d5bSBarry Smith Notes: 2826306c2d5bSBarry Smith $ PETSC_SUBCOMM_GENERAL - similar to MPI_Comm_split() each process sets the new communicator (color) they will belong to and the order within that communicator 2827306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - each new communicator contains a set of process with contiquous ranks in the original MPI communicator 2828306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - each new communictor contains a set of processes equally far apart in rank from the others in that new communicator 2829306c2d5bSBarry Smith 2830306c2d5bSBarry Smith Examaple: Consider a communicator with six processes split into 3 subcommunicators. 2831306c2d5bSBarry Smith $ PETSC_SUBCOMM_CONTIGUOUS - the first communicator contains rank 0,1 the second rank 2,3 and the third rank 4,5 in the original ordering of the original communicator 2832306c2d5bSBarry Smith $ PETSC_SUBCOMM_INTERLACED - the first communicator contains rank 0,3, the second 1,4 and the third 2,5 2833306c2d5bSBarry Smith 2834306c2d5bSBarry Smith Developer Notes: This is used in objects such as PCREDUNDANT() to manage the subcommunicators on which the redundant computations 2835306c2d5bSBarry Smith are performed. 2836306c2d5bSBarry Smith 2837306c2d5bSBarry Smith 2838306c2d5bSBarry Smith .seealso: PetscSubcommCreate(), PetscSubcommSetNumber(), PetscSubcommSetType(), PetscSubcommView(), PetscSubcommSetFromOptions() 2839306c2d5bSBarry Smith 2840d382aafbSBarry Smith S*/ 2841d382aafbSBarry Smith typedef struct _n_PetscSubcomm* PetscSubcomm; 2842d382aafbSBarry Smith 2843d382aafbSBarry Smith struct _n_PetscSubcomm { 2844d382aafbSBarry Smith MPI_Comm parent; /* parent communicator */ 2845d382aafbSBarry Smith MPI_Comm dupparent; /* duplicate parent communicator, under which the processors of this subcomm have contiguous rank */ 2846306c2d5bSBarry Smith MPI_Comm child; /* the sub-communicator */ 284745487dadSJed Brown PetscMPIInt n; /* num of subcommunicators under the parent communicator */ 284845487dadSJed Brown PetscMPIInt color; /* color of processors belong to this communicator */ 2849708d824cSJed Brown PetscMPIInt *subsize; /* size of subcommunicator[color] */ 285045487dadSJed Brown PetscSubcommType type; 2851e5acf8a4SHong Zhang char *subcommprefix; 2852d382aafbSBarry Smith }; 2853d382aafbSBarry Smith 2854c5e4d11fSDmitry Karpeev PETSC_STATIC_INLINE MPI_Comm PetscSubcommParent(PetscSubcomm scomm) {return scomm->parent;} 2855306c2d5bSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommChild(PetscSubcomm scomm) {return scomm->child;} 285636be1a5eSBarry Smith PETSC_STATIC_INLINE MPI_Comm PetscSubcommContiguousParent(PetscSubcomm scomm) {return scomm->dupparent;} 2857014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommCreate(MPI_Comm,PetscSubcomm*); 2858014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommDestroy(PetscSubcomm*); 2859014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetNumber(PetscSubcomm,PetscInt); 2860014dd563SJed Brown PETSC_EXTERN PetscErrorCode PetscSubcommSetType(PetscSubcomm,PetscSubcommType); 286165d9b8f1SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetTypeGeneral(PetscSubcomm,PetscMPIInt,PetscMPIInt); 2862053d1c95SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommView(PetscSubcomm,PetscViewer); 2863f68be91cSHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetFromOptions(PetscSubcomm); 2864e5acf8a4SHong Zhang PETSC_EXTERN PetscErrorCode PetscSubcommSetOptionsPrefix(PetscSubcomm,const char[]); 2865d382aafbSBarry Smith 28660f453b92SJed Brown /*S 28670f453b92SJed Brown PetscSegBuffer - a segmented extendable buffer 28680f453b92SJed Brown 28690f453b92SJed Brown Level: developer 28700f453b92SJed Brown 28710f453b92SJed Brown .seealso: PetscSegBufferCreate(), PetscSegBufferGet(), PetscSegBufferExtract(), PetscSegBufferDestroy() 28720f453b92SJed Brown S*/ 28730f453b92SJed Brown typedef struct _n_PetscSegBuffer *PetscSegBuffer; 287413e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferCreate(size_t,size_t,PetscSegBuffer*); 28750f453b92SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferDestroy(PetscSegBuffer*); 287613e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGet(PetscSegBuffer,size_t,void*); 2877137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractAlloc(PetscSegBuffer,void*); 2878137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractTo(PetscSegBuffer,void*); 2879137cf7b6SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferExtractInPlace(PetscSegBuffer,void*); 288013e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferGetSize(PetscSegBuffer,size_t*); 288113e3f751SJed Brown PETSC_EXTERN PetscErrorCode PetscSegBufferUnuse(PetscSegBuffer,size_t); 28820f453b92SJed Brown 2883471ecdacSJed Brown /* Type-safe wrapper to encourage use of PETSC_RESTRICT. Does not use PetscFunctionBegin because the error handling 2884471ecdacSJed Brown * prevents the compiler from completely erasing the stub. This is called in inner loops so it has to be as fast as 2885471ecdacSJed Brown * possible. */ 288635005c2bSLisandro Dalcin PETSC_STATIC_INLINE PetscErrorCode PetscSegBufferGetInts(PetscSegBuffer seg,PetscInt count,PetscInt *PETSC_RESTRICT *slot) {return PetscSegBufferGet(seg,(size_t)count,(void**)slot);} 2887d382aafbSBarry Smith 28889de0f6ecSBarry Smith typedef struct _n_PetscOptionsHelpPrinted *PetscOptionsHelpPrinted; 28899de0f6ecSBarry Smith extern PetscOptionsHelpPrinted PetscOptionsHelpPrintedSingleton; 28909de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedDestroy(PetscOptionsHelpPrinted*); 28919de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCreate(PetscOptionsHelpPrinted*); 28929de0f6ecSBarry Smith PETSC_EXTERN PetscErrorCode PetscOptionsHelpPrintedCheck(PetscOptionsHelpPrinted,const char*,const char*,PetscBool*); 28939de0f6ecSBarry Smith 2894268b0dfdSSatish Balay PETSC_EXTERN PetscSegBuffer PetscCitationsList; 28951f817a21SBarry Smith #undef __FUNCT__ 28961f817a21SBarry Smith #define __FUNCT__ "PetscCitationsRegister" 28971f817a21SBarry Smith /*@C 28981f817a21SBarry Smith PetscCitationsRegister - Register a bibtex item to obtain credit for an implemented algorithm used in the code. 28991f817a21SBarry Smith 29001f817a21SBarry Smith Not Collective - only what is registered on rank 0 of PETSC_COMM_WORLD will be printed 29011f817a21SBarry Smith 29021f817a21SBarry Smith Input Parameters: 29031f817a21SBarry Smith + cite - the bibtex item, formated to displayed on multiple lines nicely 29041f817a21SBarry Smith - set - a boolean variable initially set to PETSC_FALSE; this is used to insure only a single registration of the citation 29051f817a21SBarry Smith 2906850545d0SSatish Balay Level: intermediate 2907850545d0SSatish Balay 29081f817a21SBarry Smith Options Database: 29091f817a21SBarry Smith . -citations [filenmae] - print out the bibtex entries for the given computation 29101f817a21SBarry Smith @*/ 2911dff31646SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscCitationsRegister(const char cit[],PetscBool *set) 2912dff31646SBarry Smith { 2913dff31646SBarry Smith size_t len; 2914dff31646SBarry Smith char *vstring; 2915dff31646SBarry Smith PetscErrorCode ierr; 2916dff31646SBarry Smith 29171f817a21SBarry Smith PetscFunctionBegin; 29188d3683fcSBarry Smith if (set && *set) PetscFunctionReturn(0); 2919dff31646SBarry Smith ierr = PetscStrlen(cit,&len);CHKERRQ(ierr); 292035005c2bSLisandro Dalcin ierr = PetscSegBufferGet(PetscCitationsList,len,&vstring);CHKERRQ(ierr); 2921dff31646SBarry Smith ierr = PetscMemcpy(vstring,cit,len);CHKERRQ(ierr); 2922dff31646SBarry Smith if (set) *set = PETSC_TRUE; 29231f817a21SBarry Smith PetscFunctionReturn(0); 2924dff31646SBarry Smith } 2925dff31646SBarry Smith 2926b967cddfSBarry Smith PETSC_EXTERN PetscErrorCode PetscURLShorten(const char[],char[],size_t); 2927fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveAuthorize(MPI_Comm,char[],char[],size_t); 2928fe278a28SBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveRefresh(MPI_Comm,const char[],char[],size_t); 2929f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscGoogleDriveUpload(MPI_Comm,const char[],const char []); 2930fe278a28SBarry Smith 2931f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxAuthorize(MPI_Comm,char[],char[],size_t); 2932f044a08eSBarry Smith PETSC_EXTERN PetscErrorCode PetscBoxRefresh(MPI_Comm,const char[],char[],char[],size_t); 2933b967cddfSBarry Smith 293404102261SBarry Smith PETSC_EXTERN PetscErrorCode PetscTextBelt(MPI_Comm,const char[],const char[],PetscBool*); 2935dff31646SBarry Smith 293668e69593SBarry Smith PETSC_EXTERN PetscErrorCode PetscPullJSONValue(const char[],const char[],char[],size_t,PetscBool*); 29375dc0f0a4SBarry Smith PETSC_EXTERN PetscErrorCode PetscPushJSONValue(char[],const char[],const char[],size_t); 2938d382aafbSBarry Smith 2939b2566f29SBarry Smith 2940b2566f29SBarry Smith #if defined(PETSC_USE_DEBUG) 2941b2566f29SBarry Smith /* 2942b2566f29SBarry Smith Verify that all processes in the communicator have called this from the same line of code 2943b2566f29SBarry Smith */ 29448f5db7efSBarry Smith PETSC_EXTERN PetscErrorCode PetscAllreduceBarrierCheck(MPI_Comm,PetscMPIInt,int,const char*,const char *); 2945b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) (PetscAllreduceBarrierCheck(fcomm,c,__LINE__,__FUNCT__,__FILE__) || MPI_Allreduce(a,b,c,d,e,fcomm)) 2946b2566f29SBarry Smith #else 2947b2566f29SBarry Smith #define MPIU_Allreduce(a,b,c,d,e,fcomm) MPI_Allreduce(a,b,c,d,e,fcomm) 2948b2566f29SBarry Smith #endif 2949b2566f29SBarry Smith 2950d382aafbSBarry Smith /* Reset __FUNCT__ in case the user does not define it themselves */ 2951d382aafbSBarry Smith #undef __FUNCT__ 2952d382aafbSBarry Smith #define __FUNCT__ "User provided function" 2953d382aafbSBarry Smith 2954d382aafbSBarry Smith #endif 2955